10 Jan 2021 10:36:02,498 INFO : Copying experiment "Tracking Gluten throughout Brewing Using N-Terminal Labeling Mass Spectrometry" from folder /Nebraska U - FARRP/Tracking Gluten throughout Brewing Using N-Terminal Labeling Mass Spectrometry to /Panorama Public/2021/Nebraska U FARRP - Tracking Gluten throughout Brewing Using N-Terminal Labeling Mass Spectrometry
10 Jan 2021 10:36:02,498 INFO : =======================================
10 Jan 2021 10:36:02,666 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
10 Jan 2021 10:36:02,666 INFO :
10 Jan 2021 10:36:02,666 INFO : Exporting experiment.
10 Jan 2021 11:09:11,552 INFO :
10 Jan 2021 11:09:11,610 INFO : Experiment export completed successfully.
10 Jan 2021 11:09:11,610 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
10 Jan 2021 11:09:11,764 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
10 Jan 2021 11:09:11,764 INFO :
10 Jan 2021 11:09:11,764 INFO : Importing experiment.
10 Jan 2021 11:09:11,821 INFO : Loading folder properties (folder type, settings and active modules)
10 Jan 2021 11:09:12,198 INFO : Done importing folder properties (folder type, settings and active modules)
10 Jan 2021 11:09:12,205 INFO : Loading etl definitions
10 Jan 2021 11:09:12,211 INFO : Loading wikis
10 Jan 2021 11:09:12,343 INFO : 1 wiki imported
10 Jan 2021 11:09:12,343 INFO : Done importing wikis
10 Jan 2021 11:09:12,343 INFO : Starting to copy files
10 Jan 2021 11:11:14,100 INFO : 45 files copied, now copying 20190427_Mashing_Below.sky
10 Jan 2021 11:11:14,956 INFO : 46 files copied, now copying 20190427_Fermentation_Above_Chymotryptic.redundant.blib
10 Jan 2021 11:11:20,467 INFO : 51 files copied, now copying 20190428_Aging_Above_Chymotryptic.sky.view
10 Jan 2021 11:11:27,812 INFO : 56 files copied, now copying 20190427_Boiling_Above_Unspecific.skyd
10 Jan 2021 11:11:36,192 INFO : 61 files copied, now copying 20190428_Aging_Above_Unspecific.blib
10 Jan 2021 11:11:45,122 INFO : 66 files copied, now copying 20190427_Fermentation_Above_Unspecific.skyd
10 Jan 2021 11:11:52,293 INFO : 71 files copied, now copying 20190426_Barley_Malting_Above_Unspecific.sky
10 Jan 2021 11:11:58,189 INFO : 76 files copied, now copying 20190427_Boiling_Above_Chymotryptic.sky.view
10 Jan 2021 11:12:04,702 INFO : 81 files copied, now copying 20190426_Barley_Malting_Above_Chymotryptic.redundant.blib
10 Jan 2021 11:12:10,398 INFO : 86 files copied, now copying 20190427_Wheat_Malting_Above_Unspecific.redundant.blib
10 Jan 2021 11:12:19,492 INFO : 91 files copied, now copying 20190426_Barley_Malting_Below.redundant.blib
10 Jan 2021 11:12:22,192 INFO : 96 files copied, now copying 20190427_Boiling_Below.blib
10 Jan 2021 11:12:33,176 INFO : 101 files copied, now copying 20190428_Aging_Below.redundant.blib
10 Jan 2021 11:12:46,017 INFO : 106 files copied, now copying 20190427_Wheat_Malting_Above_Chymotryptic.blib
10 Jan 2021 11:12:51,951 INFO : 111 files copied, now copying 20190427_Mashing_Above_Unspecific.skyd
10 Jan 2021 11:13:00,048 INFO : 116 files copied, now copying 20190427_Mashing_Above_Chymotryptic.blib
10 Jan 2021 11:13:06,371 INFO : 121 files copied, now copying 20190323_VC_Wheat_Malting_A6c.raw
10 Jan 2021 11:15:07,106 INFO : 150 files copied, now copying 20190311_VC_Fermentation_A5b.raw
10 Jan 2021 11:17:07,297 INFO : 180 files copied, now copying 20190323_VC_Wheat_Malting_A5c.raw
10 Jan 2021 11:19:08,008 INFO : 212 files copied, now copying 20190422_VC_Aging_B9a.raw
10 Jan 2021 11:21:10,528 INFO : 244 files copied, now copying 20190227_VC_Barley_Malting_B6b.raw
10 Jan 2021 11:23:12,458 INFO : 278 files copied, now copying 20190326_VC_Wheat_Malting_B6b.raw
10 Jan 2021 11:25:15,240 INFO : 310 files copied, now copying 20190401_VC_Mashing_A9a.raw
10 Jan 2021 11:27:18,968 INFO : 342 files copied, now copying 20190422_VC_Aging_B7c.raw
10 Jan 2021 11:29:20,131 INFO : 375 files copied, now copying 20190225_VC_Barley_Malting_A8a.raw
10 Jan 2021 11:31:20,803 INFO : 406 files copied, now copying 20190323_VC_Wheat_Malting_A9c.raw
10 Jan 2021 11:33:22,588 INFO : 436 files copied, now copying 20190403_VC_Mashing_B1a.raw
10 Jan 2021 11:33:58,477 INFO : 445 files copied, now copying 20190427_Wheat_Malting_Below.redundant.blib
10 Jan 2021 11:34:10,267 INFO : Copied 450 files
10 Jan 2021 11:34:10,267 INFO : Ensuring exp.data rows exist for imported files
10 Jan 2021 11:34:18,269 INFO : Loading xar
10 Jan 2021 11:36:48,212 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip'
10 Jan 2021 11:36:48,215 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip.Core'
10 Jan 2021 11:36:48,218 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip.Output'
10 Jan 2021 11:36:48,218 DEBUG: Protocol import complete
10 Jan 2021 11:36:48,269 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-8022:N-terminal+Labeling+of+Bench-Scale+Brewing+Samples'
10 Jan 2021 11:36:48,269 DEBUG: Experiment/Run group import complete
10 Jan 2021 11:36:48,316 DEBUG: Protocol action set import complete
10 Jan 2021 11:36:48,333 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip'
10 Jan 2021 11:36:48,394 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8022:035a6235-1e45-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:48,398 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8022:0c10c572-1e37-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:48,398 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip.Core'
10 Jan 2021 11:36:48,402 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip.Output'
10 Jan 2021 11:36:48,403 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8022:1bf65f20-1e48-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:48,411 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip'
10 Jan 2021 11:36:48,432 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8022:367d522b-1e42-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:48,436 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8022:0c10a8a7-1e37-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:48,437 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip.Core'
10 Jan 2021 11:36:48,439 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip.Output'
10 Jan 2021 11:36:48,439 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8022:035a5eec-1e45-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:48,455 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip'
10 Jan 2021 11:36:48,468 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8022:87f134be-1e3d-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:48,479 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8022:73665a31-1e35-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:48,479 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip.Core'
10 Jan 2021 11:36:48,485 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip.Output'
10 Jan 2021 11:36:48,486 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8022:367d4f8b-1e42-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:48,505 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip'
10 Jan 2021 11:36:48,519 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8022:f07a0d97-1e3a-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:48,557 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8022:4310af68-1e33-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:48,557 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip.Core'
10 Jan 2021 11:36:48,563 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip.Output'
10 Jan 2021 11:36:48,564 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8022:87f132e4-1e3d-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:48,583 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip'
10 Jan 2021 11:36:48,596 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8022:d1c7edf1-1e37-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:48,606 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8022:4310ac4c-1e33-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:48,607 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip.Core'
10 Jan 2021 11:36:48,612 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip.Output'
10 Jan 2021 11:36:48,613 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8022:f07a0adf-1e3a-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:48,632 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip'
10 Jan 2021 11:36:48,645 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8022:4310a382-1e33-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:48,655 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8022:4310a2b0-1e33-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:48,656 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip.Core'
10 Jan 2021 11:36:48,661 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip.Output'
10 Jan 2021 11:36:48,662 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8022:d1c7e9d7-1e37-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:48,682 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip'
10 Jan 2021 11:36:48,696 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8022:43109604-1e33-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:48,706 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8022:43109545-1e33-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:48,707 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip.Core'
10 Jan 2021 11:36:48,712 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip.Output'
10 Jan 2021 11:36:48,713 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8022:43109974-1e33-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:48,732 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip'
10 Jan 2021 11:36:48,745 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8022:43108d84-1e33-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:48,755 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8022:43108b4f-1e33-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:48,756 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip.Core'
10 Jan 2021 11:36:48,761 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip.Output'
10 Jan 2021 11:36:48,762 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8022:431092ba-1e33-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:48,797 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip'
10 Jan 2021 11:36:48,824 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8022:23bbf9e5-1e31-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:48,834 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8022:23bbf61f-1e31-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:48,835 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip.Core'
10 Jan 2021 11:36:48,840 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip.Output'
10 Jan 2021 11:36:48,841 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8022:43108ca9-1e33-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:48,860 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip'
10 Jan 2021 11:36:48,873 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8022:23bbf4a0-1e31-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:48,884 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8022:23bbf369-1e31-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:48,884 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip.Core'
10 Jan 2021 11:36:48,889 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip.Output'
10 Jan 2021 11:36:48,891 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8022:23bbf90e-1e31-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:48,910 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip'
10 Jan 2021 11:36:48,922 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8022:23bbf088-1e31-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:48,933 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8022:23bbec00-1e31-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:48,933 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip.Core'
10 Jan 2021 11:36:48,938 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip.Output'
10 Jan 2021 11:36:48,940 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8022:23bbf29f-1e31-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:48,959 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip'
10 Jan 2021 11:36:48,971 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8022:23bbebe6-1e31-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:48,982 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8022:23bbeb30-1e31-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:48,982 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip.Core'
10 Jan 2021 11:36:48,987 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip.Output'
10 Jan 2021 11:36:48,989 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8022:23bbefd3-1e31-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:49,008 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip'
10 Jan 2021 11:36:49,021 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8022:23bbe8fb-1e31-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:49,031 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8022:23bbe7c7-1e31-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:49,031 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip.Core'
10 Jan 2021 11:36:49,036 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip.Output'
10 Jan 2021 11:36:49,038 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8022:23bbea48-1e31-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:49,057 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip'
10 Jan 2021 11:36:49,099 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8022:23bbe690-1e31-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:49,122 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8022:23bbe604-1e31-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:49,122 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip.Core'
10 Jan 2021 11:36:49,127 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip.Output'
10 Jan 2021 11:36:49,129 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8022:23bbe88f-1e31-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:49,173 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip'
10 Jan 2021 11:36:49,185 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8022:23bbdc57-1e31-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:49,196 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8022:23bbdbb3-1e31-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:49,196 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip.Core'
10 Jan 2021 11:36:49,201 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip.Output'
10 Jan 2021 11:36:49,203 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8022:23bbde8e-1e31-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:49,222 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip'
10 Jan 2021 11:36:49,235 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8022:2b49e234-1e2f-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:49,245 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8022:04b0b8a9-1e2d-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:49,245 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip.Core'
10 Jan 2021 11:36:49,251 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip.Output'
10 Jan 2021 11:36:49,252 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8022:2b49e417-1e2f-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:49,271 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip'
10 Jan 2021 11:36:49,303 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8022:2b49e08e-1e2f-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:49,314 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8022:04b0a15e-1e2d-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:49,314 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip.Core'
10 Jan 2021 11:36:49,319 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip.Output'
10 Jan 2021 11:36:49,321 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8022:2b49e1dc-1e2f-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:49,340 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip'
10 Jan 2021 11:36:49,353 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8022:2b49dc25-1e2f-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:49,364 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8022:513d914e-1e2a-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:49,364 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip.Core'
10 Jan 2021 11:36:49,369 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8022:TargetedMS.ImportSkyZip.Output'
10 Jan 2021 11:36:49,370 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8022:2b49de1b-1e2f-1039-927b-3013bb9ba7ed'
10 Jan 2021 11:36:49,375 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96235/20190428_Aging_Below_2020-12-11_16-48-28/20190428_Aging_Below.skyd into the system
10 Jan 2021 11:36:49,377 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96235/20190428_Aging_Below_2020-12-11_16-48-28/20190428_Aging_Below.skyd into the system
10 Jan 2021 11:36:49,378 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96235/20190428_Aging_Below_2020-12-11_16-48-28.sky.zip into the system
10 Jan 2021 11:36:49,381 INFO : Starting import from 20190428_Aging_Below_2020-12-11_16-48-28.sky.zip
10 Jan 2021 11:36:49,390 INFO : Starting to import Skyline document from 20190428_Aging_Below_2020-12-11_16-48-28.sky.zip
10 Jan 2021 11:36:49,672 INFO : Expanding 20190428_Aging_Below.blib
10 Jan 2021 11:36:51,510 INFO : Expanding 20190428_Aging_Below.redundant.blib
10 Jan 2021 11:36:53,772 INFO : Expanding 20190428_Aging_Below.skyd
10 Jan 2021 11:37:00,511 INFO : Expanding 20190428_Aging_Below.sky.view
10 Jan 2021 11:37:00,512 INFO : Expanding 20190428_Aging_Below.sky
10 Jan 2021 11:37:07,665 DEBUG: Starting to load chromatogram headers
10 Jan 2021 11:37:07,752 DEBUG: Done loading chromatogram headers
10 Jan 2021 11:37:08,291 INFO : Inserting Gamma gliadin
10 Jan 2021 11:37:08,430 DEBUG: Total peptides inserted: 1
10 Jan 2021 11:37:08,512 INFO : Inserting Gamma gliadin
10 Jan 2021 11:37:08,650 DEBUG: Total peptides inserted: 2
10 Jan 2021 11:37:08,706 INFO : Inserting Gamma gliadin
10 Jan 2021 11:37:08,766 DEBUG: Total peptides inserted: 1
10 Jan 2021 11:37:08,798 INFO : Inserting Gamma gliadin
10 Jan 2021 11:37:08,823 DEBUG: Total peptides inserted: 1
10 Jan 2021 11:37:08,850 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 11:37:08,968 DEBUG: Total peptides inserted: 2
10 Jan 2021 11:37:08,986 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 11:37:09,185 DEBUG: Total peptides inserted: 7
10 Jan 2021 11:37:09,219 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 11:37:09,256 DEBUG: Total peptides inserted: 2
10 Jan 2021 11:37:09,274 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 11:37:09,406 DEBUG: Total peptides inserted: 7
10 Jan 2021 11:37:09,423 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 11:37:09,551 DEBUG: Total peptides inserted: 3
10 Jan 2021 11:37:09,552 INFO : Inserting Library Peptides
10 Jan 2021 11:37:10,407 INFO : 1% Done
10 Jan 2021 11:37:15,082 INFO : 2% Done
10 Jan 2021 11:37:22,491 INFO : 3% Done
10 Jan 2021 11:37:26,539 INFO : 4% Done
10 Jan 2021 11:37:27,002 DEBUG: Inserted 50 peptides
10 Jan 2021 11:37:30,494 INFO : 5% Done
10 Jan 2021 11:37:34,692 INFO : 6% Done
10 Jan 2021 11:37:42,584 INFO : 7% Done
10 Jan 2021 11:37:42,584 DEBUG: Inserted 100 peptides
10 Jan 2021 11:37:46,505 INFO : 8% Done
10 Jan 2021 11:37:50,254 INFO : 9% Done
10 Jan 2021 11:37:53,877 INFO : 10% Done
10 Jan 2021 11:37:57,791 DEBUG: Inserted 150 peptides
10 Jan 2021 11:38:01,477 INFO : 11% Done
10 Jan 2021 11:38:05,399 INFO : 12% Done
10 Jan 2021 11:38:08,225 INFO : 13% Done
10 Jan 2021 11:38:12,533 INFO : 14% Done
10 Jan 2021 11:38:13,625 DEBUG: Inserted 200 peptides
10 Jan 2021 11:38:20,739 INFO : 15% Done
10 Jan 2021 11:38:24,891 INFO : 16% Done
10 Jan 2021 11:38:28,644 INFO : 17% Done
10 Jan 2021 11:38:30,146 DEBUG: Inserted 250 peptides
10 Jan 2021 11:38:31,911 INFO : 18% Done
10 Jan 2021 11:38:36,167 INFO : 19% Done
10 Jan 2021 11:38:38,422 INFO : 20% Done
10 Jan 2021 11:38:39,050 DEBUG: Inserted 300 peptides
10 Jan 2021 11:38:41,543 INFO : 21% Done
10 Jan 2021 11:38:45,530 INFO : 22% Done
10 Jan 2021 11:38:53,365 INFO : 23% Done
10 Jan 2021 11:38:55,289 DEBUG: Inserted 350 peptides
10 Jan 2021 11:38:57,713 INFO : 24% Done
10 Jan 2021 11:39:01,500 INFO : 25% Done
10 Jan 2021 11:39:05,216 INFO : 26% Done
10 Jan 2021 11:39:11,641 DEBUG: Inserted 400 peptides
10 Jan 2021 11:39:12,219 INFO : 27% Done
10 Jan 2021 11:39:14,228 INFO : 28% Done
10 Jan 2021 11:39:16,297 INFO : 29% Done
10 Jan 2021 11:39:18,361 INFO : 30% Done
10 Jan 2021 11:39:21,153 DEBUG: Inserted 450 peptides
10 Jan 2021 11:39:22,877 INFO : 31% Done
10 Jan 2021 11:39:24,833 INFO : 32% Done
10 Jan 2021 11:39:27,132 INFO : 33% Done
10 Jan 2021 11:39:28,818 INFO : 34% Done
10 Jan 2021 11:39:29,253 DEBUG: Inserted 500 peptides
10 Jan 2021 11:39:30,239 INFO : 35% Done
10 Jan 2021 11:39:31,047 INFO : 36% Done
10 Jan 2021 11:39:31,906 INFO : 37% Done
10 Jan 2021 11:39:32,403 DEBUG: Inserted 550 peptides
10 Jan 2021 11:39:32,655 INFO : 38% Done
10 Jan 2021 11:39:34,646 INFO : 39% Done
10 Jan 2021 11:39:35,492 INFO : 40% Done
10 Jan 2021 11:39:36,105 DEBUG: Inserted 600 peptides
10 Jan 2021 11:39:36,205 INFO : 41% Done
10 Jan 2021 11:39:37,081 INFO : 42% Done
10 Jan 2021 11:39:38,571 INFO : 43% Done
10 Jan 2021 11:39:39,243 INFO : 44% Done
10 Jan 2021 11:39:39,244 DEBUG: Inserted 650 peptides
10 Jan 2021 11:39:39,970 INFO : 45% Done
10 Jan 2021 11:39:40,748 INFO : 46% Done
10 Jan 2021 11:39:42,161 INFO : 47% Done
10 Jan 2021 11:39:42,605 DEBUG: Inserted 700 peptides
10 Jan 2021 11:39:43,035 INFO : 48% Done
10 Jan 2021 11:39:43,815 INFO : 49% Done
10 Jan 2021 11:39:44,642 INFO : 50% Done
10 Jan 2021 11:39:45,877 DEBUG: Inserted 750 peptides
10 Jan 2021 11:39:46,133 INFO : 51% Done
10 Jan 2021 11:39:46,780 INFO : 52% Done
10 Jan 2021 11:39:47,679 INFO : 53% Done
10 Jan 2021 11:39:48,509 INFO : 54% Done
10 Jan 2021 11:39:49,421 DEBUG: Inserted 800 peptides
10 Jan 2021 11:39:50,185 INFO : 55% Done
10 Jan 2021 11:39:51,003 INFO : 56% Done
10 Jan 2021 11:39:51,694 INFO : 57% Done
10 Jan 2021 11:39:52,347 INFO : 58% Done
10 Jan 2021 11:39:52,598 DEBUG: Inserted 850 peptides
10 Jan 2021 11:39:53,772 INFO : 59% Done
10 Jan 2021 11:39:54,482 INFO : 60% Done
10 Jan 2021 11:39:55,254 INFO : 61% Done
10 Jan 2021 11:39:55,556 DEBUG: Inserted 900 peptides
10 Jan 2021 11:39:56,025 INFO : 62% Done
10 Jan 2021 11:39:57,552 INFO : 63% Done
10 Jan 2021 11:39:58,277 INFO : 64% Done
10 Jan 2021 11:39:58,634 DEBUG: Inserted 950 peptides
10 Jan 2021 11:39:58,985 INFO : 65% Done
10 Jan 2021 11:39:59,754 INFO : 66% Done
10 Jan 2021 11:40:01,220 INFO : 67% Done
10 Jan 2021 11:40:01,735 DEBUG: Inserted 1000 peptides
10 Jan 2021 11:40:02,033 INFO : 68% Done
10 Jan 2021 11:40:02,928 INFO : 69% Done
10 Jan 2021 11:40:04,051 INFO : 70% Done
10 Jan 2021 11:40:06,105 DEBUG: Inserted 1050 peptides
10 Jan 2021 11:40:06,721 INFO : 71% Done
10 Jan 2021 11:40:07,841 INFO : 72% Done
10 Jan 2021 11:40:09,151 INFO : 73% Done
10 Jan 2021 11:40:10,468 INFO : 74% Done
10 Jan 2021 11:40:11,036 DEBUG: Inserted 1100 peptides
10 Jan 2021 11:40:12,680 INFO : 75% Done
10 Jan 2021 11:40:13,700 INFO : 76% Done
10 Jan 2021 11:40:14,419 INFO : 77% Done
10 Jan 2021 11:40:15,026 DEBUG: Inserted 1150 peptides
10 Jan 2021 11:40:15,077 INFO : 78% Done
10 Jan 2021 11:40:16,616 INFO : 79% Done
10 Jan 2021 11:40:17,411 INFO : 80% Done
10 Jan 2021 11:40:17,841 DEBUG: Total peptides inserted: 1192
10 Jan 2021 11:40:17,842 INFO : None of the 245268 TransitionChromInfos in the file were imported because they exceed the limit of 100000
10 Jan 2021 11:48:37,230 INFO : Updated 81756 PrecursorChromInfos with transition chromatogram index information
10 Jan 2021 11:48:37,232 INFO : Done parsing Skyline document.
10 Jan 2021 11:48:37,235 INFO : Calculating fold changes
10 Jan 2021 11:48:37,235 DEBUG: Calculating fold change for group comparison volcano, 1 of 1
10 Jan 2021 11:49:07,335 INFO : 98% Done
10 Jan 2021 11:49:07,336 INFO : Done calculating fold changes.
10 Jan 2021 11:49:07,399 INFO : Creating and populating temp tables for Proportion values
10 Jan 2021 11:49:08,708 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
10 Jan 2021 11:49:24,800 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
10 Jan 2021 11:49:27,183 INFO : Cleaning up temp tables
10 Jan 2021 11:49:27,533 INFO : Completed import of Skyline document from 20190428_Aging_Below_2020-12-11_16-48-28.sky.zip
10 Jan 2021 11:49:27,552 INFO : 100% Done
10 Jan 2021 11:49:27,560 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96235/20190428_Aging_Below_2020-12-11_16-48-28.sky.zip into the system
10 Jan 2021 11:49:27,616 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96234/20190427_Fermentation_Below_2020-12-11_16-44-38/20190427_Fermentation_Below.skyd into the system
10 Jan 2021 11:49:27,618 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96234/20190427_Fermentation_Below_2020-12-11_16-44-38/20190427_Fermentation_Below.skyd into the system
10 Jan 2021 11:49:27,618 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96234/20190427_Fermentation_Below_2020-12-11_16-44-38.sky.zip into the system
10 Jan 2021 11:49:27,620 INFO : Starting import from 20190427_Fermentation_Below_2020-12-11_16-44-38.sky.zip
10 Jan 2021 11:49:27,625 INFO : Starting to import Skyline document from 20190427_Fermentation_Below_2020-12-11_16-44-38.sky.zip
10 Jan 2021 11:49:27,753 INFO : Expanding 20190427_Fermentation_Below.blib
10 Jan 2021 11:49:29,148 INFO : Expanding 20190427_Fermentation_Below.redundant.blib
10 Jan 2021 11:49:30,983 INFO : Expanding 20190427_Fermentation_Below.skyd
10 Jan 2021 11:49:40,051 INFO : Expanding 20190427_Fermentation_Below.sky.view
10 Jan 2021 11:49:40,052 INFO : Expanding 20190427_Fermentation_Below.sky
10 Jan 2021 11:49:47,553 DEBUG: Starting to load chromatogram headers
10 Jan 2021 11:49:47,686 DEBUG: Done loading chromatogram headers
10 Jan 2021 11:49:47,852 INFO : Inserting Gamma gliadin
10 Jan 2021 11:49:47,912 DEBUG: Total peptides inserted: 4
10 Jan 2021 11:49:47,915 INFO : Inserting Gamma gliadin
10 Jan 2021 11:49:47,918 INFO : Inserting Gamma gliadin
10 Jan 2021 11:49:47,927 DEBUG: Total peptides inserted: 1
10 Jan 2021 11:49:47,930 INFO : Inserting Gamma gliadin
10 Jan 2021 11:49:47,932 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 11:49:48,406 DEBUG: Total peptides inserted: 5
10 Jan 2021 11:49:48,413 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 11:49:48,861 DEBUG: Total peptides inserted: 8
10 Jan 2021 11:49:48,866 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 11:49:49,153 INFO : 1% Done
10 Jan 2021 11:49:49,171 DEBUG: Total peptides inserted: 4
10 Jan 2021 11:49:49,176 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 11:49:49,549 DEBUG: Total peptides inserted: 7
10 Jan 2021 11:49:49,553 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 11:49:49,715 DEBUG: Total peptides inserted: 6
10 Jan 2021 11:49:49,715 INFO : Inserting Library Peptides
10 Jan 2021 11:49:52,278 INFO : 2% Done
10 Jan 2021 11:49:55,676 INFO : 3% Done
10 Jan 2021 11:49:59,063 INFO : 4% Done
10 Jan 2021 11:50:00,658 DEBUG: Inserted 50 peptides
10 Jan 2021 11:50:02,344 INFO : 5% Done
10 Jan 2021 11:50:05,407 INFO : 6% Done
10 Jan 2021 11:50:12,775 INFO : 7% Done
10 Jan 2021 11:50:13,335 DEBUG: Inserted 100 peptides
10 Jan 2021 11:50:16,824 INFO : 8% Done
10 Jan 2021 11:50:20,501 INFO : 9% Done
10 Jan 2021 11:50:23,883 INFO : 10% Done
10 Jan 2021 11:50:27,923 DEBUG: Inserted 150 peptides
10 Jan 2021 11:50:30,429 INFO : 11% Done
10 Jan 2021 11:50:33,943 INFO : 12% Done
10 Jan 2021 11:50:37,889 INFO : 13% Done
10 Jan 2021 11:50:42,525 INFO : 14% Done
10 Jan 2021 11:50:43,996 DEBUG: Inserted 200 peptides
10 Jan 2021 11:50:50,012 INFO : 15% Done
10 Jan 2021 11:50:55,184 INFO : 16% Done
10 Jan 2021 11:50:59,342 INFO : 17% Done
10 Jan 2021 11:51:00,464 DEBUG: Inserted 250 peptides
10 Jan 2021 11:51:03,258 INFO : 18% Done
10 Jan 2021 11:51:10,397 INFO : 19% Done
10 Jan 2021 11:51:14,256 INFO : 20% Done
10 Jan 2021 11:51:15,578 DEBUG: Inserted 300 peptides
10 Jan 2021 11:51:18,290 INFO : 21% Done
10 Jan 2021 11:51:21,917 INFO : 22% Done
10 Jan 2021 11:51:29,722 INFO : 23% Done
10 Jan 2021 11:51:31,370 DEBUG: Inserted 350 peptides
10 Jan 2021 11:51:33,621 INFO : 24% Done
10 Jan 2021 11:51:37,594 INFO : 25% Done
10 Jan 2021 11:51:41,421 INFO : 26% Done
10 Jan 2021 11:51:46,186 INFO : 27% Done
10 Jan 2021 11:51:46,186 DEBUG: Inserted 400 peptides
10 Jan 2021 11:51:48,643 INFO : 28% Done
10 Jan 2021 11:51:51,326 INFO : 29% Done
10 Jan 2021 11:51:53,081 INFO : 30% Done
10 Jan 2021 11:51:54,962 DEBUG: Inserted 450 peptides
10 Jan 2021 11:51:56,274 INFO : 31% Done
10 Jan 2021 11:51:57,792 INFO : 32% Done
10 Jan 2021 11:51:59,108 INFO : 33% Done
10 Jan 2021 11:52:00,837 INFO : 34% Done
10 Jan 2021 11:52:01,697 DEBUG: Inserted 500 peptides
10 Jan 2021 11:52:02,884 INFO : 35% Done
10 Jan 2021 11:52:04,033 INFO : 36% Done
10 Jan 2021 11:52:04,629 INFO : 37% Done
10 Jan 2021 11:52:04,979 DEBUG: Inserted 550 peptides
10 Jan 2021 11:52:05,421 INFO : 38% Done
10 Jan 2021 11:52:06,804 INFO : 39% Done
10 Jan 2021 11:52:07,576 INFO : 40% Done
10 Jan 2021 11:52:08,169 DEBUG: Inserted 600 peptides
10 Jan 2021 11:52:08,327 INFO : 41% Done
10 Jan 2021 11:52:09,134 INFO : 42% Done
10 Jan 2021 11:52:10,571 INFO : 43% Done
10 Jan 2021 11:52:11,597 INFO : 44% Done
10 Jan 2021 11:52:11,708 DEBUG: Inserted 650 peptides
10 Jan 2021 11:52:12,461 INFO : 45% Done
10 Jan 2021 11:52:13,305 INFO : 46% Done
10 Jan 2021 11:52:14,874 INFO : 47% Done
10 Jan 2021 11:52:15,222 DEBUG: Inserted 700 peptides
10 Jan 2021 11:52:15,687 INFO : 48% Done
10 Jan 2021 11:52:16,466 INFO : 49% Done
10 Jan 2021 11:52:17,235 INFO : 50% Done
10 Jan 2021 11:52:18,942 INFO : 51% Done
10 Jan 2021 11:52:19,000 DEBUG: Inserted 750 peptides
10 Jan 2021 11:52:19,980 INFO : 52% Done
10 Jan 2021 11:52:21,045 INFO : 53% Done
10 Jan 2021 11:52:21,897 INFO : 54% Done
10 Jan 2021 11:52:22,748 DEBUG: Inserted 800 peptides
10 Jan 2021 11:52:23,746 INFO : 55% Done
10 Jan 2021 11:52:24,887 INFO : 56% Done
10 Jan 2021 11:52:25,828 INFO : 57% Done
10 Jan 2021 11:52:26,635 DEBUG: Inserted 850 peptides
10 Jan 2021 11:52:26,743 INFO : 58% Done
10 Jan 2021 11:52:28,455 INFO : 59% Done
10 Jan 2021 11:52:29,255 INFO : 60% Done
10 Jan 2021 11:52:30,370 INFO : 61% Done
10 Jan 2021 11:52:30,488 DEBUG: Inserted 900 peptides
10 Jan 2021 11:52:31,339 INFO : 62% Done
10 Jan 2021 11:52:33,123 INFO : 63% Done
10 Jan 2021 11:52:34,030 INFO : 64% Done
10 Jan 2021 11:52:34,255 DEBUG: Inserted 950 peptides
10 Jan 2021 11:52:35,070 INFO : 65% Done
10 Jan 2021 11:52:35,977 INFO : 66% Done
10 Jan 2021 11:52:38,013 INFO : 67% Done
10 Jan 2021 11:52:38,857 DEBUG: Inserted 1000 peptides
10 Jan 2021 11:52:38,978 INFO : 68% Done
10 Jan 2021 11:52:39,842 INFO : 69% Done
10 Jan 2021 11:52:40,790 INFO : 70% Done
10 Jan 2021 11:52:42,595 DEBUG: Inserted 1050 peptides
10 Jan 2021 11:52:42,678 INFO : 71% Done
10 Jan 2021 11:52:43,515 INFO : 72% Done
10 Jan 2021 11:52:44,541 INFO : 73% Done
10 Jan 2021 11:52:45,435 INFO : 74% Done
10 Jan 2021 11:52:46,478 DEBUG: Inserted 1100 peptides
10 Jan 2021 11:52:47,137 INFO : 75% Done
10 Jan 2021 11:52:47,861 INFO : 76% Done
10 Jan 2021 11:52:48,706 INFO : 77% Done
10 Jan 2021 11:52:49,472 INFO : 78% Done
10 Jan 2021 11:52:49,573 DEBUG: Inserted 1150 peptides
10 Jan 2021 11:52:51,181 INFO : 79% Done
10 Jan 2021 11:52:52,076 INFO : 80% Done
10 Jan 2021 11:52:52,535 DEBUG: Total peptides inserted: 1189
10 Jan 2021 11:52:52,536 INFO : None of the 237654 TransitionChromInfos in the file were imported because they exceed the limit of 100000
10 Jan 2021 12:00:52,158 INFO : Updated 79218 PrecursorChromInfos with transition chromatogram index information
10 Jan 2021 12:00:52,168 INFO : Done parsing Skyline document.
10 Jan 2021 12:00:52,172 INFO : Calculating fold changes
10 Jan 2021 12:00:52,172 DEBUG: Calculating fold change for group comparison volcano, 1 of 1
10 Jan 2021 12:01:20,072 INFO : 98% Done
10 Jan 2021 12:01:20,073 INFO : Done calculating fold changes.
10 Jan 2021 12:01:20,089 INFO : Creating and populating temp tables for Proportion values
10 Jan 2021 12:01:21,599 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
10 Jan 2021 12:01:34,771 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
10 Jan 2021 12:01:36,935 INFO : Cleaning up temp tables
10 Jan 2021 12:01:37,224 INFO : Completed import of Skyline document from 20190427_Fermentation_Below_2020-12-11_16-44-38.sky.zip
10 Jan 2021 12:01:37,228 INFO : 100% Done
10 Jan 2021 12:01:37,234 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96234/20190427_Fermentation_Below_2020-12-11_16-44-38.sky.zip into the system
10 Jan 2021 12:01:37,294 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96233/20190427_Mashing_Below_2020-12-11_16-38-57/20190427_Mashing_Below.skyd into the system
10 Jan 2021 12:01:37,296 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96233/20190427_Mashing_Below_2020-12-11_16-38-57/20190427_Mashing_Below.skyd into the system
10 Jan 2021 12:01:37,296 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96233/20190427_Mashing_Below_2020-12-11_16-38-57.sky.zip into the system
10 Jan 2021 12:01:37,298 INFO : Starting import from 20190427_Mashing_Below_2020-12-11_16-38-57.sky.zip
10 Jan 2021 12:01:37,303 INFO : Starting to import Skyline document from 20190427_Mashing_Below_2020-12-11_16-38-57.sky.zip
10 Jan 2021 12:01:37,407 INFO : Expanding 20190427_Mashing_Below.blib
10 Jan 2021 12:01:38,409 INFO : Expanding 20190427_Mashing_Below.redundant.blib
10 Jan 2021 12:01:42,008 INFO : Expanding 20190427_Mashing_Below.skyd
10 Jan 2021 12:01:49,552 INFO : Expanding 20190427_Mashing_Below.sky.view
10 Jan 2021 12:01:49,553 INFO : Expanding 20190427_Mashing_Below.sky
10 Jan 2021 12:01:57,444 DEBUG: Starting to load chromatogram headers
10 Jan 2021 12:01:57,530 DEBUG: Done loading chromatogram headers
10 Jan 2021 12:01:57,934 INFO : Inserting Gamma gliadin
10 Jan 2021 12:01:58,333 DEBUG: Total peptides inserted: 17
10 Jan 2021 12:01:58,337 INFO : Inserting Gamma gliadin
10 Jan 2021 12:01:58,566 DEBUG: Total peptides inserted: 13
10 Jan 2021 12:01:58,571 INFO : Inserting Gamma gliadin
10 Jan 2021 12:01:59,980 INFO : 1% Done
10 Jan 2021 12:02:01,882 DEBUG: Total peptides inserted: 17
10 Jan 2021 12:02:01,885 INFO : Inserting Gamma gliadin
10 Jan 2021 12:02:01,986 DEBUG: Total peptides inserted: 13
10 Jan 2021 12:02:01,988 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:02:02,306 INFO : 2% Done
10 Jan 2021 12:02:02,919 DEBUG: Total peptides inserted: 19
10 Jan 2021 12:02:02,922 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:02:03,360 DEBUG: Total peptides inserted: 17
10 Jan 2021 12:02:03,363 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:02:03,962 DEBUG: Total peptides inserted: 19
10 Jan 2021 12:02:03,965 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:02:04,368 DEBUG: Total peptides inserted: 18
10 Jan 2021 12:02:04,370 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:02:04,987 DEBUG: Total peptides inserted: 15
10 Jan 2021 12:02:04,988 INFO : Inserting Library Peptides
10 Jan 2021 12:02:06,773 INFO : 3% Done
10 Jan 2021 12:02:09,055 INFO : 4% Done
10 Jan 2021 12:02:10,473 INFO : 5% Done
10 Jan 2021 12:02:12,070 INFO : 6% Done
10 Jan 2021 12:02:13,642 DEBUG: Inserted 50 peptides
10 Jan 2021 12:02:19,721 INFO : 7% Done
10 Jan 2021 12:02:23,406 INFO : 8% Done
10 Jan 2021 12:02:26,965 INFO : 9% Done
10 Jan 2021 12:02:29,751 DEBUG: Inserted 100 peptides
10 Jan 2021 12:02:30,478 INFO : 10% Done
10 Jan 2021 12:02:37,291 INFO : 11% Done
10 Jan 2021 12:02:39,067 INFO : 12% Done
10 Jan 2021 12:02:42,747 INFO : 13% Done
10 Jan 2021 12:02:43,582 DEBUG: Inserted 150 peptides
10 Jan 2021 12:02:46,436 INFO : 14% Done
10 Jan 2021 12:02:51,219 INFO : 15% Done
10 Jan 2021 12:02:53,520 INFO : 16% Done
10 Jan 2021 12:02:54,439 DEBUG: Inserted 200 peptides
10 Jan 2021 12:02:55,741 INFO : 17% Done
10 Jan 2021 12:02:57,883 INFO : 18% Done
10 Jan 2021 12:03:02,248 INFO : 19% Done
10 Jan 2021 12:03:02,398 DEBUG: Inserted 250 peptides
10 Jan 2021 12:03:04,502 INFO : 20% Done
10 Jan 2021 12:03:06,569 INFO : 21% Done
10 Jan 2021 12:03:08,657 INFO : 22% Done
10 Jan 2021 12:03:11,610 DEBUG: Inserted 300 peptides
10 Jan 2021 12:03:12,663 INFO : 23% Done
10 Jan 2021 12:03:14,512 INFO : 24% Done
10 Jan 2021 12:03:17,021 INFO : 25% Done
10 Jan 2021 12:03:19,730 INFO : 26% Done
10 Jan 2021 12:03:22,065 DEBUG: Inserted 350 peptides
10 Jan 2021 12:03:24,548 INFO : 27% Done
10 Jan 2021 12:03:27,809 INFO : 28% Done
10 Jan 2021 12:03:31,365 INFO : 29% Done
10 Jan 2021 12:03:34,633 INFO : 30% Done
10 Jan 2021 12:03:34,633 DEBUG: Inserted 400 peptides
10 Jan 2021 12:03:38,884 INFO : 31% Done
10 Jan 2021 12:03:40,886 INFO : 32% Done
10 Jan 2021 12:03:42,533 DEBUG: Inserted 450 peptides
10 Jan 2021 12:03:43,330 INFO : 33% Done
10 Jan 2021 12:03:45,866 INFO : 34% Done
10 Jan 2021 12:03:48,304 INFO : 35% Done
10 Jan 2021 12:03:49,459 INFO : 36% Done
10 Jan 2021 12:03:49,633 DEBUG: Inserted 500 peptides
10 Jan 2021 12:03:50,732 INFO : 37% Done
10 Jan 2021 12:03:51,984 INFO : 38% Done
10 Jan 2021 12:03:54,439 INFO : 39% Done
10 Jan 2021 12:03:55,397 DEBUG: Inserted 550 peptides
10 Jan 2021 12:03:55,668 INFO : 40% Done
10 Jan 2021 12:03:57,040 INFO : 41% Done
10 Jan 2021 12:03:58,250 INFO : 42% Done
10 Jan 2021 12:04:00,233 DEBUG: Inserted 600 peptides
10 Jan 2021 12:04:00,541 INFO : 43% Done
10 Jan 2021 12:04:01,728 INFO : 44% Done
10 Jan 2021 12:04:02,885 INFO : 45% Done
10 Jan 2021 12:04:04,038 INFO : 46% Done
10 Jan 2021 12:04:05,185 DEBUG: Inserted 650 peptides
10 Jan 2021 12:04:06,404 INFO : 47% Done
10 Jan 2021 12:04:07,608 INFO : 48% Done
10 Jan 2021 12:04:08,795 INFO : 49% Done
10 Jan 2021 12:04:09,803 DEBUG: Inserted 700 peptides
10 Jan 2021 12:04:09,965 INFO : 50% Done
10 Jan 2021 12:04:12,296 INFO : 51% Done
10 Jan 2021 12:04:13,419 INFO : 52% Done
10 Jan 2021 12:04:14,307 DEBUG: Inserted 750 peptides
10 Jan 2021 12:04:14,646 INFO : 53% Done
10 Jan 2021 12:04:15,766 INFO : 54% Done
10 Jan 2021 12:04:17,838 INFO : 55% Done
10 Jan 2021 12:04:18,883 INFO : 56% Done
10 Jan 2021 12:04:19,348 DEBUG: Inserted 800 peptides
10 Jan 2021 12:04:20,068 INFO : 57% Done
10 Jan 2021 12:04:21,163 INFO : 58% Done
10 Jan 2021 12:04:23,488 INFO : 59% Done
10 Jan 2021 12:04:24,259 DEBUG: Inserted 850 peptides
10 Jan 2021 12:04:24,750 INFO : 60% Done
10 Jan 2021 12:04:25,863 INFO : 61% Done
10 Jan 2021 12:04:26,723 INFO : 62% Done
10 Jan 2021 12:04:27,855 INFO : 63% Done
10 Jan 2021 12:04:28,047 DEBUG: Inserted 900 peptides
10 Jan 2021 12:04:28,573 INFO : 64% Done
10 Jan 2021 12:04:29,297 INFO : 65% Done
10 Jan 2021 12:04:29,979 INFO : 66% Done
10 Jan 2021 12:04:30,786 DEBUG: Inserted 950 peptides
10 Jan 2021 12:04:31,503 INFO : 67% Done
10 Jan 2021 12:04:32,233 INFO : 68% Done
10 Jan 2021 12:04:32,986 INFO : 69% Done
10 Jan 2021 12:04:33,683 INFO : 70% Done
10 Jan 2021 12:04:33,736 DEBUG: Inserted 1000 peptides
10 Jan 2021 12:04:35,095 INFO : 71% Done
10 Jan 2021 12:04:35,787 INFO : 72% Done
10 Jan 2021 12:04:36,490 INFO : 73% Done
10 Jan 2021 12:04:36,539 DEBUG: Inserted 1050 peptides
10 Jan 2021 12:04:37,244 INFO : 74% Done
10 Jan 2021 12:04:38,597 INFO : 75% Done
10 Jan 2021 12:04:39,217 INFO : 76% Done
10 Jan 2021 12:04:40,142 INFO : 77% Done
10 Jan 2021 12:04:40,194 DEBUG: Inserted 1100 peptides
10 Jan 2021 12:04:40,869 INFO : 78% Done
10 Jan 2021 12:04:42,225 INFO : 79% Done
10 Jan 2021 12:04:42,921 INFO : 80% Done
10 Jan 2021 12:04:43,315 DEBUG: Total peptides inserted: 1149
10 Jan 2021 12:04:43,315 INFO : None of the 245430 TransitionChromInfos in the file were imported because they exceed the limit of 100000
10 Jan 2021 12:12:40,287 INFO : Updated 81810 PrecursorChromInfos with transition chromatogram index information
10 Jan 2021 12:12:40,289 INFO : Done parsing Skyline document.
10 Jan 2021 12:12:40,293 INFO : Calculating fold changes
10 Jan 2021 12:12:40,293 DEBUG: Calculating fold change for group comparison volcano, 1 of 1
10 Jan 2021 12:13:07,878 INFO : 98% Done
10 Jan 2021 12:13:07,878 INFO : Done calculating fold changes.
10 Jan 2021 12:13:07,880 INFO : Creating and populating temp tables for Proportion values
10 Jan 2021 12:13:09,281 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
10 Jan 2021 12:13:22,514 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
10 Jan 2021 12:13:25,635 INFO : Cleaning up temp tables
10 Jan 2021 12:13:25,981 INFO : Completed import of Skyline document from 20190427_Mashing_Below_2020-12-11_16-38-57.sky.zip
10 Jan 2021 12:13:25,986 INFO : 100% Done
10 Jan 2021 12:13:25,994 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96233/20190427_Mashing_Below_2020-12-11_16-38-57.sky.zip into the system
10 Jan 2021 12:13:26,051 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96232/20190427_Wheat_Malting_Below_2020-12-11_16-36-19/20190427_Wheat_Malting_Below.skyd into the system
10 Jan 2021 12:13:26,053 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96232/20190427_Wheat_Malting_Below_2020-12-11_16-36-19/20190427_Wheat_Malting_Below.skyd into the system
10 Jan 2021 12:13:26,053 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96232/20190427_Wheat_Malting_Below_2020-12-11_16-36-19.sky.zip into the system
10 Jan 2021 12:13:26,055 INFO : Starting import from 20190427_Wheat_Malting_Below_2020-12-11_16-36-19.sky.zip
10 Jan 2021 12:13:26,059 INFO : Starting to import Skyline document from 20190427_Wheat_Malting_Below_2020-12-11_16-36-19.sky.zip
10 Jan 2021 12:13:26,159 INFO : Expanding 20190427_Wheat_Malting_Below.blib
10 Jan 2021 12:13:26,856 INFO : Expanding 20190427_Wheat_Malting_Below.redundant.blib
10 Jan 2021 12:13:28,599 INFO : Expanding 20190427_Wheat_Malting_Below.skyd
10 Jan 2021 12:13:37,053 INFO : Expanding 20190427_Wheat_Malting_Below.sky.view
10 Jan 2021 12:13:37,054 INFO : Expanding 20190427_Wheat_Malting_Below.sky
10 Jan 2021 12:13:45,246 DEBUG: Starting to load chromatogram headers
10 Jan 2021 12:13:45,328 DEBUG: Done loading chromatogram headers
10 Jan 2021 12:13:45,440 INFO : Inserting Gamma gliadin
10 Jan 2021 12:13:45,729 INFO : 1% Done
10 Jan 2021 12:13:48,198 INFO : 2% Done
10 Jan 2021 12:13:49,141 DEBUG: Total peptides inserted: 24
10 Jan 2021 12:13:49,144 INFO : Inserting Gamma gliadin
10 Jan 2021 12:13:49,393 DEBUG: Total peptides inserted: 13
10 Jan 2021 12:13:49,397 INFO : Inserting Gamma gliadin
10 Jan 2021 12:13:50,098 DEBUG: Total peptides inserted: 9
10 Jan 2021 12:13:50,102 INFO : Inserting Gamma gliadin
10 Jan 2021 12:13:50,270 DEBUG: Total peptides inserted: 10
10 Jan 2021 12:13:50,273 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:13:51,125 DEBUG: Total peptides inserted: 5
10 Jan 2021 12:13:51,130 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:13:52,238 DEBUG: Total peptides inserted: 10
10 Jan 2021 12:13:52,242 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:13:52,518 INFO : 3% Done
10 Jan 2021 12:13:53,043 DEBUG: Total peptides inserted: 5
10 Jan 2021 12:13:53,046 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:13:54,188 DEBUG: Total peptides inserted: 12
10 Jan 2021 12:13:54,191 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:13:54,476 DEBUG: Total peptides inserted: 2
10 Jan 2021 12:13:54,476 INFO : Inserting Library Peptides
10 Jan 2021 12:13:54,485 INFO : 4% Done
10 Jan 2021 12:13:57,868 INFO : 5% Done
10 Jan 2021 12:14:01,484 INFO : 6% Done
10 Jan 2021 12:14:06,582 DEBUG: Inserted 50 peptides
10 Jan 2021 12:14:08,045 INFO : 7% Done
10 Jan 2021 12:14:11,469 INFO : 8% Done
10 Jan 2021 12:14:14,736 INFO : 9% Done
10 Jan 2021 12:14:17,782 INFO : 10% Done
10 Jan 2021 12:14:21,473 DEBUG: Inserted 100 peptides
10 Jan 2021 12:14:25,386 INFO : 11% Done
10 Jan 2021 12:14:29,148 INFO : 12% Done
10 Jan 2021 12:14:32,620 INFO : 13% Done
10 Jan 2021 12:14:35,354 INFO : 14% Done
10 Jan 2021 12:14:35,500 DEBUG: Inserted 150 peptides
10 Jan 2021 12:14:39,321 INFO : 15% Done
10 Jan 2021 12:14:41,387 INFO : 16% Done
10 Jan 2021 12:14:43,391 INFO : 17% Done
10 Jan 2021 12:14:44,913 DEBUG: Inserted 200 peptides
10 Jan 2021 12:14:45,399 INFO : 18% Done
10 Jan 2021 12:14:49,284 INFO : 19% Done
10 Jan 2021 12:14:50,668 INFO : 20% Done
10 Jan 2021 12:14:52,539 INFO : 21% Done
10 Jan 2021 12:14:53,589 DEBUG: Inserted 250 peptides
10 Jan 2021 12:14:54,570 INFO : 22% Done
10 Jan 2021 12:14:58,396 INFO : 23% Done
10 Jan 2021 12:15:00,417 INFO : 24% Done
10 Jan 2021 12:15:02,284 INFO : 25% Done
10 Jan 2021 12:15:02,732 DEBUG: Inserted 300 peptides
10 Jan 2021 12:15:03,991 INFO : 26% Done
10 Jan 2021 12:15:07,530 INFO : 27% Done
10 Jan 2021 12:15:10,779 INFO : 28% Done
10 Jan 2021 12:15:14,262 INFO : 29% Done
10 Jan 2021 12:15:14,263 DEBUG: Inserted 350 peptides
10 Jan 2021 12:15:17,626 INFO : 30% Done
10 Jan 2021 12:15:24,239 INFO : 31% Done
10 Jan 2021 12:15:27,590 INFO : 32% Done
10 Jan 2021 12:15:29,721 DEBUG: Inserted 400 peptides
10 Jan 2021 12:15:30,924 INFO : 33% Done
10 Jan 2021 12:15:33,880 INFO : 34% Done
10 Jan 2021 12:15:37,836 INFO : 35% Done
10 Jan 2021 12:15:39,364 INFO : 36% Done
10 Jan 2021 12:15:40,474 INFO : 37% Done
10 Jan 2021 12:15:40,723 DEBUG: Inserted 450 peptides
10 Jan 2021 12:15:41,076 INFO : 38% Done
10 Jan 2021 12:15:42,370 INFO : 39% Done
10 Jan 2021 12:15:42,946 INFO : 40% Done
10 Jan 2021 12:15:43,577 INFO : 41% Done
10 Jan 2021 12:15:44,075 DEBUG: Inserted 500 peptides
10 Jan 2021 12:15:44,254 INFO : 42% Done
10 Jan 2021 12:15:45,507 INFO : 43% Done
10 Jan 2021 12:15:46,171 INFO : 44% Done
10 Jan 2021 12:15:46,637 DEBUG: Inserted 550 peptides
10 Jan 2021 12:15:46,816 INFO : 45% Done
10 Jan 2021 12:15:47,515 INFO : 46% Done
10 Jan 2021 12:15:48,738 INFO : 47% Done
10 Jan 2021 12:15:49,202 DEBUG: Inserted 600 peptides
10 Jan 2021 12:15:49,379 INFO : 48% Done
10 Jan 2021 12:15:50,044 INFO : 49% Done
10 Jan 2021 12:15:50,733 INFO : 50% Done
10 Jan 2021 12:15:52,417 DEBUG: Inserted 650 peptides
10 Jan 2021 12:15:52,490 INFO : 51% Done
10 Jan 2021 12:15:53,291 INFO : 52% Done
10 Jan 2021 12:15:54,286 INFO : 53% Done
10 Jan 2021 12:15:55,412 INFO : 54% Done
10 Jan 2021 12:15:57,033 DEBUG: Inserted 700 peptides
10 Jan 2021 12:15:57,599 INFO : 55% Done
10 Jan 2021 12:15:58,563 INFO : 56% Done
10 Jan 2021 12:15:59,566 INFO : 57% Done
10 Jan 2021 12:16:00,595 INFO : 58% Done
10 Jan 2021 12:16:01,030 DEBUG: Inserted 750 peptides
10 Jan 2021 12:16:02,661 INFO : 59% Done
10 Jan 2021 12:16:03,675 INFO : 60% Done
10 Jan 2021 12:16:04,763 INFO : 61% Done
10 Jan 2021 12:16:05,763 INFO : 62% Done
10 Jan 2021 12:16:06,061 DEBUG: Inserted 800 peptides
10 Jan 2021 12:16:07,823 INFO : 63% Done
10 Jan 2021 12:16:08,746 INFO : 64% Done
10 Jan 2021 12:16:09,549 INFO : 65% Done
10 Jan 2021 12:16:10,287 INFO : 66% Done
10 Jan 2021 12:16:10,533 DEBUG: Inserted 850 peptides
10 Jan 2021 12:16:11,690 INFO : 67% Done
10 Jan 2021 12:16:12,381 INFO : 68% Done
10 Jan 2021 12:16:13,190 INFO : 69% Done
10 Jan 2021 12:16:13,883 INFO : 70% Done
10 Jan 2021 12:16:14,483 DEBUG: Inserted 900 peptides
10 Jan 2021 12:16:15,495 INFO : 71% Done
10 Jan 2021 12:16:16,301 INFO : 72% Done
10 Jan 2021 12:16:17,031 INFO : 73% Done
10 Jan 2021 12:16:17,795 INFO : 74% Done
10 Jan 2021 12:16:17,986 DEBUG: Inserted 950 peptides
10 Jan 2021 12:16:19,565 INFO : 75% Done
10 Jan 2021 12:16:20,442 INFO : 76% Done
10 Jan 2021 12:16:21,204 INFO : 77% Done
10 Jan 2021 12:16:21,836 DEBUG: Inserted 1000 peptides
10 Jan 2021 12:16:22,071 INFO : 78% Done
10 Jan 2021 12:16:23,589 INFO : 79% Done
10 Jan 2021 12:16:24,356 INFO : 80% Done
10 Jan 2021 12:16:24,790 DEBUG: Total peptides inserted: 1036
10 Jan 2021 12:16:24,790 INFO : None of the 225018 TransitionChromInfos in the file were imported because they exceed the limit of 100000
10 Jan 2021 12:24:02,503 INFO : Updated 75006 PrecursorChromInfos with transition chromatogram index information
10 Jan 2021 12:24:02,513 INFO : Done parsing Skyline document.
10 Jan 2021 12:24:02,516 INFO : Calculating fold changes
10 Jan 2021 12:24:02,516 DEBUG: Calculating fold change for group comparison volcano, 1 of 1
10 Jan 2021 12:24:23,253 INFO : 98% Done
10 Jan 2021 12:24:23,254 INFO : Done calculating fold changes.
10 Jan 2021 12:24:23,255 INFO : Creating and populating temp tables for Proportion values
10 Jan 2021 12:24:24,304 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
10 Jan 2021 12:24:33,257 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
10 Jan 2021 12:24:35,569 INFO : Cleaning up temp tables
10 Jan 2021 12:24:35,578 INFO : Completed import of Skyline document from 20190427_Wheat_Malting_Below_2020-12-11_16-36-19.sky.zip
10 Jan 2021 12:24:35,583 INFO : 100% Done
10 Jan 2021 12:24:35,616 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96232/20190427_Wheat_Malting_Below_2020-12-11_16-36-19.sky.zip into the system
10 Jan 2021 12:24:35,629 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96231/20190427_Boiling_Below_2020-12-11_16-41-39/20190427_Boiling_Below.skyd into the system
10 Jan 2021 12:24:35,629 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96231/20190427_Boiling_Below_2020-12-11_16-41-39/20190427_Boiling_Below.skyd into the system
10 Jan 2021 12:24:35,629 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96231/20190427_Boiling_Below_2020-12-11_16-41-39.sky.zip into the system
10 Jan 2021 12:24:35,631 INFO : Starting import from 20190427_Boiling_Below_2020-12-11_16-41-39.sky.zip
10 Jan 2021 12:24:35,635 INFO : Starting to import Skyline document from 20190427_Boiling_Below_2020-12-11_16-41-39.sky.zip
10 Jan 2021 12:24:35,681 INFO : Expanding 20190427_Boiling_Below.blib
10 Jan 2021 12:24:36,452 INFO : Expanding 20190427_Boiling_Below.redundant.blib
10 Jan 2021 12:24:37,893 INFO : Expanding 20190427_Boiling_Below.skyd
10 Jan 2021 12:24:46,175 INFO : Expanding 20190427_Boiling_Below.sky.view
10 Jan 2021 12:24:46,175 INFO : Expanding 20190427_Boiling_Below.sky
10 Jan 2021 12:24:51,062 DEBUG: Starting to load chromatogram headers
10 Jan 2021 12:24:51,118 DEBUG: Done loading chromatogram headers
10 Jan 2021 12:24:51,729 INFO : Inserting Gamma gliadin
10 Jan 2021 12:24:51,793 DEBUG: Total peptides inserted: 3
10 Jan 2021 12:24:51,798 INFO : Inserting Gamma gliadin
10 Jan 2021 12:24:52,034 DEBUG: Total peptides inserted: 13
10 Jan 2021 12:24:52,040 INFO : Inserting Gamma gliadin
10 Jan 2021 12:24:52,106 INFO : 1% Done
10 Jan 2021 12:24:54,493 INFO : 2% Done
10 Jan 2021 12:24:55,867 DEBUG: Total peptides inserted: 12
10 Jan 2021 12:24:55,873 INFO : Inserting Gamma gliadin
10 Jan 2021 12:24:56,128 DEBUG: Total peptides inserted: 13
10 Jan 2021 12:24:56,133 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:24:56,732 DEBUG: Total peptides inserted: 5
10 Jan 2021 12:24:56,739 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:24:57,346 DEBUG: Total peptides inserted: 7
10 Jan 2021 12:24:57,352 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:24:57,997 DEBUG: Total peptides inserted: 5
10 Jan 2021 12:24:58,002 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:24:58,765 DEBUG: Total peptides inserted: 7
10 Jan 2021 12:24:58,770 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:24:58,881 DEBUG: Total peptides inserted: 6
10 Jan 2021 12:24:58,881 INFO : Inserting Library Peptides
10 Jan 2021 12:24:59,908 INFO : 3% Done
10 Jan 2021 12:25:02,117 INFO : 4% Done
10 Jan 2021 12:25:03,934 INFO : 5% Done
10 Jan 2021 12:25:05,716 INFO : 6% Done
10 Jan 2021 12:25:07,842 INFO : 7% Done
10 Jan 2021 12:25:08,899 INFO : 8% Done
10 Jan 2021 12:25:09,013 DEBUG: Inserted 50 peptides
10 Jan 2021 12:25:10,051 INFO : 9% Done
10 Jan 2021 12:25:11,044 INFO : 10% Done
10 Jan 2021 12:25:13,148 INFO : 11% Done
10 Jan 2021 12:25:14,396 INFO : 12% Done
10 Jan 2021 12:25:15,875 INFO : 13% Done
10 Jan 2021 12:25:16,951 INFO : 14% Done
10 Jan 2021 12:25:17,299 DEBUG: Inserted 100 peptides
10 Jan 2021 12:25:18,910 INFO : 15% Done
10 Jan 2021 12:25:20,316 INFO : 16% Done
10 Jan 2021 12:25:21,975 INFO : 17% Done
10 Jan 2021 12:25:23,691 INFO : 18% Done
10 Jan 2021 12:25:27,608 INFO : 19% Done
10 Jan 2021 12:25:27,865 DEBUG: Inserted 150 peptides
10 Jan 2021 12:25:29,808 INFO : 20% Done
10 Jan 2021 12:25:31,500 INFO : 21% Done
10 Jan 2021 12:25:32,886 INFO : 22% Done
10 Jan 2021 12:25:36,536 INFO : 23% Done
10 Jan 2021 12:25:38,049 INFO : 24% Done
10 Jan 2021 12:25:39,617 INFO : 25% Done
10 Jan 2021 12:25:40,671 DEBUG: Inserted 200 peptides
10 Jan 2021 12:25:41,576 INFO : 26% Done
10 Jan 2021 12:25:43,790 INFO : 27% Done
10 Jan 2021 12:25:44,766 INFO : 28% Done
10 Jan 2021 12:25:45,808 INFO : 29% Done
10 Jan 2021 12:25:48,038 INFO : 30% Done
10 Jan 2021 12:25:48,526 DEBUG: Inserted 250 peptides
10 Jan 2021 12:25:52,785 INFO : 31% Done
10 Jan 2021 12:25:55,365 INFO : 32% Done
10 Jan 2021 12:25:57,278 INFO : 33% Done
10 Jan 2021 12:25:59,698 INFO : 34% Done
10 Jan 2021 12:26:04,159 INFO : 35% Done
10 Jan 2021 12:26:06,220 INFO : 36% Done
10 Jan 2021 12:26:06,220 DEBUG: Inserted 300 peptides
10 Jan 2021 12:26:08,451 INFO : 37% Done
10 Jan 2021 12:26:09,901 INFO : 38% Done
10 Jan 2021 12:26:13,127 INFO : 39% Done
10 Jan 2021 12:26:15,169 INFO : 40% Done
10 Jan 2021 12:26:17,103 INFO : 41% Done
10 Jan 2021 12:26:17,490 DEBUG: Inserted 350 peptides
10 Jan 2021 12:26:18,504 INFO : 42% Done
10 Jan 2021 12:26:21,334 INFO : 43% Done
10 Jan 2021 12:26:22,565 INFO : 44% Done
10 Jan 2021 12:26:23,564 INFO : 45% Done
10 Jan 2021 12:26:25,339 INFO : 46% Done
10 Jan 2021 12:26:28,719 DEBUG: Inserted 400 peptides
10 Jan 2021 12:26:29,632 INFO : 47% Done
10 Jan 2021 12:26:31,786 INFO : 48% Done
10 Jan 2021 12:26:33,935 INFO : 49% Done
10 Jan 2021 12:26:35,823 INFO : 50% Done
10 Jan 2021 12:26:40,319 INFO : 51% Done
10 Jan 2021 12:26:42,737 INFO : 52% Done
10 Jan 2021 12:26:42,737 DEBUG: Inserted 450 peptides
10 Jan 2021 12:26:45,154 INFO : 53% Done
10 Jan 2021 12:26:47,541 INFO : 54% Done
10 Jan 2021 12:26:50,321 INFO : 55% Done
10 Jan 2021 12:26:51,117 INFO : 56% Done
10 Jan 2021 12:26:51,951 INFO : 57% Done
10 Jan 2021 12:26:52,262 DEBUG: Inserted 500 peptides
10 Jan 2021 12:26:52,702 INFO : 58% Done
10 Jan 2021 12:26:54,029 INFO : 59% Done
10 Jan 2021 12:26:54,782 INFO : 60% Done
10 Jan 2021 12:26:55,602 INFO : 61% Done
10 Jan 2021 12:26:56,372 INFO : 62% Done
10 Jan 2021 12:26:56,772 DEBUG: Inserted 550 peptides
10 Jan 2021 12:26:57,738 INFO : 63% Done
10 Jan 2021 12:26:58,511 INFO : 64% Done
10 Jan 2021 12:26:59,104 INFO : 65% Done
10 Jan 2021 12:26:59,925 INFO : 66% Done
10 Jan 2021 12:27:01,091 DEBUG: Inserted 600 peptides
10 Jan 2021 12:27:01,321 INFO : 67% Done
10 Jan 2021 12:27:01,900 INFO : 68% Done
10 Jan 2021 12:27:02,600 INFO : 69% Done
10 Jan 2021 12:27:03,241 INFO : 70% Done
10 Jan 2021 12:27:04,291 INFO : 71% Done
10 Jan 2021 12:27:04,795 INFO : 72% Done
10 Jan 2021 12:27:05,419 INFO : 73% Done
10 Jan 2021 12:27:05,419 DEBUG: Inserted 650 peptides
10 Jan 2021 12:27:06,004 INFO : 74% Done
10 Jan 2021 12:27:07,178 INFO : 75% Done
10 Jan 2021 12:27:07,744 INFO : 76% Done
10 Jan 2021 12:27:08,345 INFO : 77% Done
10 Jan 2021 12:27:08,831 INFO : 78% Done
10 Jan 2021 12:27:08,831 DEBUG: Inserted 700 peptides
10 Jan 2021 12:27:09,973 INFO : 79% Done
10 Jan 2021 12:27:10,620 INFO : 80% Done
10 Jan 2021 12:27:10,953 DEBUG: Total peptides inserted: 725
10 Jan 2021 12:27:10,953 INFO : None of the 149364 TransitionChromInfos in the file were imported because they exceed the limit of 100000
10 Jan 2021 12:34:49,355 INFO : Updated 49788 PrecursorChromInfos with transition chromatogram index information
10 Jan 2021 12:34:49,356 INFO : Done parsing Skyline document.
10 Jan 2021 12:34:49,360 INFO : Calculating fold changes
10 Jan 2021 12:34:49,360 DEBUG: Calculating fold change for group comparison volcano, 1 of 1
10 Jan 2021 12:35:12,769 INFO : 98% Done
10 Jan 2021 12:35:12,769 INFO : Done calculating fold changes.
10 Jan 2021 12:35:12,827 INFO : Creating and populating temp tables for Proportion values
10 Jan 2021 12:35:13,550 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
10 Jan 2021 12:35:18,924 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
10 Jan 2021 12:35:20,512 INFO : Cleaning up temp tables
10 Jan 2021 12:35:21,166 INFO : Completed import of Skyline document from 20190427_Boiling_Below_2020-12-11_16-41-39.sky.zip
10 Jan 2021 12:35:21,175 INFO : 100% Done
10 Jan 2021 12:35:21,184 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96231/20190427_Boiling_Below_2020-12-11_16-41-39.sky.zip into the system
10 Jan 2021 12:35:21,240 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96230/20190428_Aging_Above_Unspecific_2020-12-11_16-47-27/20190428_Aging_Above_Unspecific.skyd into the system
10 Jan 2021 12:35:21,241 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96230/20190428_Aging_Above_Unspecific_2020-12-11_16-47-27/20190428_Aging_Above_Unspecific.skyd into the system
10 Jan 2021 12:35:21,241 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96230/20190428_Aging_Above_Unspecific_2020-12-11_16-47-27.sky.zip into the system
10 Jan 2021 12:35:21,244 INFO : Starting import from 20190428_Aging_Above_Unspecific_2020-12-11_16-47-27.sky.zip
10 Jan 2021 12:35:21,249 INFO : Starting to import Skyline document from 20190428_Aging_Above_Unspecific_2020-12-11_16-47-27.sky.zip
10 Jan 2021 12:35:21,385 INFO : Expanding 20190428_Aging_Above_Unspecific.blib
10 Jan 2021 12:35:23,049 INFO : Expanding 20190428_Aging_Above_Unspecific.redundant.blib
10 Jan 2021 12:35:27,444 INFO : Expanding 20190428_Aging_Above_Unspecific.skyd
10 Jan 2021 12:35:29,481 INFO : Expanding 20190428_Aging_Above_Unspecific.sky.view
10 Jan 2021 12:35:29,482 INFO : Expanding 20190428_Aging_Above_Unspecific.sky
10 Jan 2021 12:35:32,280 DEBUG: Starting to load chromatogram headers
10 Jan 2021 12:35:32,316 DEBUG: Done loading chromatogram headers
10 Jan 2021 12:35:32,447 INFO : Inserting Gamma gliadin
10 Jan 2021 12:35:32,455 INFO : 1% Done
10 Jan 2021 12:35:33,348 INFO : 2% Done
10 Jan 2021 12:35:33,661 DEBUG: Total peptides inserted: 13
10 Jan 2021 12:35:33,666 INFO : Inserting Gamma gliadin
10 Jan 2021 12:35:34,552 DEBUG: Total peptides inserted: 6
10 Jan 2021 12:35:34,559 INFO : Inserting Gamma gliadin
10 Jan 2021 12:35:35,583 DEBUG: Total peptides inserted: 9
10 Jan 2021 12:35:35,589 INFO : Inserting Gamma gliadin
10 Jan 2021 12:35:36,543 DEBUG: Total peptides inserted: 6
10 Jan 2021 12:35:36,548 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:35:37,181 INFO : 3% Done
10 Jan 2021 12:35:38,527 DEBUG: Total peptides inserted: 13
10 Jan 2021 12:35:38,533 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:35:39,428 INFO : 4% Done
10 Jan 2021 12:35:39,758 DEBUG: Total peptides inserted: 14
10 Jan 2021 12:35:39,761 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:35:40,109 INFO : 5% Done
10 Jan 2021 12:35:40,453 DEBUG: Total peptides inserted: 13
10 Jan 2021 12:35:40,456 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:35:40,847 INFO : 6% Done
10 Jan 2021 12:35:41,072 DEBUG: Total peptides inserted: 14
10 Jan 2021 12:35:41,075 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:35:41,594 DEBUG: Total peptides inserted: 12
10 Jan 2021 12:35:41,594 INFO : Inserting Library Peptides
10 Jan 2021 12:35:42,142 INFO : 7% Done
10 Jan 2021 12:35:43,016 INFO : 8% Done
10 Jan 2021 12:35:43,527 INFO : 9% Done
10 Jan 2021 12:35:44,341 INFO : 10% Done
10 Jan 2021 12:35:45,875 INFO : 11% Done
10 Jan 2021 12:35:46,487 INFO : 12% Done
10 Jan 2021 12:35:47,249 INFO : 13% Done
10 Jan 2021 12:35:48,014 INFO : 14% Done
10 Jan 2021 12:35:48,119 DEBUG: Inserted 50 peptides
10 Jan 2021 12:35:49,324 INFO : 15% Done
10 Jan 2021 12:35:50,091 INFO : 16% Done
10 Jan 2021 12:35:50,797 INFO : 17% Done
10 Jan 2021 12:35:51,715 INFO : 18% Done
10 Jan 2021 12:35:53,576 INFO : 19% Done
10 Jan 2021 12:35:54,389 INFO : 20% Done
10 Jan 2021 12:35:55,024 INFO : 21% Done
10 Jan 2021 12:35:55,156 DEBUG: Inserted 100 peptides
10 Jan 2021 12:35:55,849 INFO : 22% Done
10 Jan 2021 12:35:57,262 INFO : 23% Done
10 Jan 2021 12:35:57,904 INFO : 24% Done
10 Jan 2021 12:35:58,703 INFO : 25% Done
10 Jan 2021 12:35:59,257 INFO : 26% Done
10 Jan 2021 12:36:00,681 INFO : 27% Done
10 Jan 2021 12:36:01,434 INFO : 28% Done
10 Jan 2021 12:36:01,764 DEBUG: Inserted 150 peptides
10 Jan 2021 12:36:02,108 INFO : 29% Done
10 Jan 2021 12:36:02,745 INFO : 30% Done
10 Jan 2021 12:36:04,041 INFO : 31% Done
10 Jan 2021 12:36:04,717 INFO : 32% Done
10 Jan 2021 12:36:05,773 INFO : 33% Done
10 Jan 2021 12:36:07,261 INFO : 34% Done
10 Jan 2021 12:36:08,678 INFO : 35% Done
10 Jan 2021 12:36:09,432 INFO : 36% Done
10 Jan 2021 12:36:09,645 DEBUG: Inserted 200 peptides
10 Jan 2021 12:36:10,217 INFO : 37% Done
10 Jan 2021 12:36:10,951 INFO : 38% Done
10 Jan 2021 12:36:12,403 INFO : 39% Done
10 Jan 2021 12:36:13,107 INFO : 40% Done
10 Jan 2021 12:36:13,894 INFO : 41% Done
10 Jan 2021 12:36:14,555 INFO : 42% Done
10 Jan 2021 12:36:15,952 INFO : 43% Done
10 Jan 2021 12:36:16,576 INFO : 44% Done
10 Jan 2021 12:36:16,796 DEBUG: Inserted 250 peptides
10 Jan 2021 12:36:17,352 INFO : 45% Done
10 Jan 2021 12:36:18,061 INFO : 46% Done
10 Jan 2021 12:36:19,644 INFO : 47% Done
10 Jan 2021 12:36:20,451 INFO : 48% Done
10 Jan 2021 12:36:21,284 INFO : 49% Done
10 Jan 2021 12:36:21,933 INFO : 50% Done
10 Jan 2021 12:36:23,140 DEBUG: Inserted 300 peptides
10 Jan 2021 12:36:23,383 INFO : 51% Done
10 Jan 2021 12:36:24,076 INFO : 52% Done
10 Jan 2021 12:36:24,868 INFO : 53% Done
10 Jan 2021 12:36:25,574 INFO : 54% Done
10 Jan 2021 12:36:27,160 INFO : 55% Done
10 Jan 2021 12:36:28,010 INFO : 56% Done
10 Jan 2021 12:36:28,557 INFO : 57% Done
10 Jan 2021 12:36:29,247 DEBUG: Inserted 350 peptides
10 Jan 2021 12:36:29,374 INFO : 58% Done
10 Jan 2021 12:36:30,963 INFO : 59% Done
10 Jan 2021 12:36:31,688 INFO : 60% Done
10 Jan 2021 12:36:32,511 INFO : 61% Done
10 Jan 2021 12:36:33,224 INFO : 62% Done
10 Jan 2021 12:36:36,148 INFO : 63% Done
10 Jan 2021 12:36:37,673 INFO : 64% Done
10 Jan 2021 12:36:38,625 DEBUG: Inserted 400 peptides
10 Jan 2021 12:36:38,884 INFO : 65% Done
10 Jan 2021 12:36:40,320 INFO : 66% Done
10 Jan 2021 12:36:43,718 INFO : 67% Done
10 Jan 2021 12:36:45,156 INFO : 68% Done
10 Jan 2021 12:36:46,645 INFO : 69% Done
10 Jan 2021 12:36:47,906 INFO : 70% Done
10 Jan 2021 12:36:49,639 INFO : 71% Done
10 Jan 2021 12:36:50,442 INFO : 72% Done
10 Jan 2021 12:36:50,442 DEBUG: Inserted 450 peptides
10 Jan 2021 12:36:51,055 INFO : 73% Done
10 Jan 2021 12:36:51,759 INFO : 74% Done
10 Jan 2021 12:36:53,186 INFO : 75% Done
10 Jan 2021 12:36:53,833 INFO : 76% Done
10 Jan 2021 12:36:54,507 INFO : 77% Done
10 Jan 2021 12:36:55,021 INFO : 78% Done
10 Jan 2021 12:36:55,590 INFO : 79% Done
10 Jan 2021 12:36:55,793 INFO : 80% Done
10 Jan 2021 12:36:55,793 DEBUG: Inserted 500 peptides
10 Jan 2021 12:36:55,975 DEBUG: Total peptides inserted: 503
10 Jan 2021 12:36:55,975 INFO : None of the 104328 TransitionChromInfos in the file were imported because they exceed the limit of 100000
10 Jan 2021 12:44:31,918 INFO : Updated 34776 PrecursorChromInfos with transition chromatogram index information
10 Jan 2021 12:44:31,919 INFO : Done parsing Skyline document.
10 Jan 2021 12:44:31,923 INFO : Calculating fold changes
10 Jan 2021 12:44:31,923 DEBUG: Calculating fold change for group comparison volcano, 1 of 1
10 Jan 2021 12:44:50,514 INFO : 98% Done
10 Jan 2021 12:44:50,514 INFO : Done calculating fold changes.
10 Jan 2021 12:44:50,567 INFO : Creating and populating temp tables for Proportion values
10 Jan 2021 12:44:51,278 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
10 Jan 2021 12:44:58,147 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
10 Jan 2021 12:44:59,589 INFO : Cleaning up temp tables
10 Jan 2021 12:45:00,081 INFO : Completed import of Skyline document from 20190428_Aging_Above_Unspecific_2020-12-11_16-47-27.sky.zip
10 Jan 2021 12:45:00,087 INFO : 100% Done
10 Jan 2021 12:45:00,093 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96230/20190428_Aging_Above_Unspecific_2020-12-11_16-47-27.sky.zip into the system
10 Jan 2021 12:45:00,106 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96229/20190428_Aging_Above_Chymotryptic_2020-12-11_16-46-20/20190428_Aging_Above_Chymotryptic.skyd into the system
10 Jan 2021 12:45:00,106 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96229/20190428_Aging_Above_Chymotryptic_2020-12-11_16-46-20/20190428_Aging_Above_Chymotryptic.skyd into the system
10 Jan 2021 12:45:00,106 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96229/20190428_Aging_Above_Chymotryptic_2020-12-11_16-46-20.sky.zip into the system
10 Jan 2021 12:45:00,108 INFO : Starting import from 20190428_Aging_Above_Chymotryptic_2020-12-11_16-46-20.sky.zip
10 Jan 2021 12:45:00,111 INFO : Starting to import Skyline document from 20190428_Aging_Above_Chymotryptic_2020-12-11_16-46-20.sky.zip
10 Jan 2021 12:45:00,126 INFO : Expanding 20190428_Aging_Above_Chymotryptic.blib
10 Jan 2021 12:45:01,198 INFO : Expanding 20190428_Aging_Above_Chymotryptic.redundant.blib
10 Jan 2021 12:45:05,325 INFO : Expanding 20190428_Aging_Above_Chymotryptic.skyd
10 Jan 2021 12:45:07,667 INFO : Expanding 20190428_Aging_Above_Chymotryptic.sky.view
10 Jan 2021 12:45:07,667 INFO : Expanding 20190428_Aging_Above_Chymotryptic.sky
10 Jan 2021 12:45:07,756 INFO : 1% Done
10 Jan 2021 12:45:08,979 DEBUG: Starting to load chromatogram headers
10 Jan 2021 12:45:08,999 DEBUG: Done loading chromatogram headers
10 Jan 2021 12:45:09,114 INFO : Inserting Gamma gliadin
10 Jan 2021 12:45:09,314 INFO : 2% Done
10 Jan 2021 12:45:11,530 DEBUG: Total peptides inserted: 19
10 Jan 2021 12:45:11,535 INFO : Inserting Gamma gliadin
10 Jan 2021 12:45:11,547 INFO : 3% Done
10 Jan 2021 12:45:12,484 DEBUG: Total peptides inserted: 12
10 Jan 2021 12:45:12,491 INFO : Inserting Gamma gliadin
10 Jan 2021 12:45:12,532 INFO : 4% Done
10 Jan 2021 12:45:13,213 DEBUG: Total peptides inserted: 11
10 Jan 2021 12:45:13,218 INFO : Inserting Gamma gliadin
10 Jan 2021 12:45:13,472 INFO : 5% Done
10 Jan 2021 12:45:14,098 DEBUG: Total peptides inserted: 11
10 Jan 2021 12:45:14,103 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:45:14,116 INFO : 6% Done
10 Jan 2021 12:45:15,185 DEBUG: Total peptides inserted: 18
10 Jan 2021 12:45:15,191 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:45:17,096 DEBUG: Total peptides inserted: 16
10 Jan 2021 12:45:17,101 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:45:17,116 INFO : 7% Done
10 Jan 2021 12:45:18,069 DEBUG: Total peptides inserted: 17
10 Jan 2021 12:45:18,075 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:45:18,116 INFO : 8% Done
10 Jan 2021 12:45:19,239 DEBUG: Total peptides inserted: 15
10 Jan 2021 12:45:19,244 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:45:19,257 INFO : 9% Done
10 Jan 2021 12:45:20,277 DEBUG: Total peptides inserted: 18
10 Jan 2021 12:45:20,277 INFO : Inserting Library Peptides
10 Jan 2021 12:45:20,287 INFO : 10% Done
10 Jan 2021 12:45:22,117 INFO : 11% Done
10 Jan 2021 12:45:23,341 INFO : 12% Done
10 Jan 2021 12:45:24,335 INFO : 13% Done
10 Jan 2021 12:45:25,047 INFO : 14% Done
10 Jan 2021 12:45:27,051 INFO : 15% Done
10 Jan 2021 12:45:27,912 INFO : 16% Done
10 Jan 2021 12:45:28,729 INFO : 17% Done
10 Jan 2021 12:45:29,522 INFO : 18% Done
10 Jan 2021 12:45:31,869 INFO : 19% Done
10 Jan 2021 12:45:32,471 INFO : 20% Done
10 Jan 2021 12:45:32,939 INFO : 21% Done
10 Jan 2021 12:45:33,633 INFO : 22% Done
10 Jan 2021 12:45:33,634 DEBUG: Inserted 50 peptides
10 Jan 2021 12:45:34,430 INFO : 23% Done
10 Jan 2021 12:45:34,806 INFO : 24% Done
10 Jan 2021 12:45:35,213 INFO : 25% Done
10 Jan 2021 12:45:35,526 INFO : 26% Done
10 Jan 2021 12:45:36,273 INFO : 27% Done
10 Jan 2021 12:45:36,744 INFO : 28% Done
10 Jan 2021 12:45:37,123 INFO : 29% Done
10 Jan 2021 12:45:37,307 INFO : 30% Done
10 Jan 2021 12:45:38,192 INFO : 31% Done
10 Jan 2021 12:45:38,668 INFO : 32% Done
10 Jan 2021 12:45:38,967 INFO : 33% Done
10 Jan 2021 12:45:39,586 INFO : 34% Done
10 Jan 2021 12:45:40,410 DEBUG: Inserted 100 peptides
10 Jan 2021 12:45:40,564 INFO : 35% Done
10 Jan 2021 12:45:41,124 INFO : 36% Done
10 Jan 2021 12:45:41,675 INFO : 37% Done
10 Jan 2021 12:45:42,214 INFO : 38% Done
10 Jan 2021 12:45:43,156 INFO : 39% Done
10 Jan 2021 12:45:43,724 INFO : 40% Done
10 Jan 2021 12:45:44,145 INFO : 41% Done
10 Jan 2021 12:45:44,733 INFO : 42% Done
10 Jan 2021 12:45:45,911 INFO : 43% Done
10 Jan 2021 12:45:46,827 INFO : 44% Done
10 Jan 2021 12:45:47,912 INFO : 45% Done
10 Jan 2021 12:45:48,663 INFO : 46% Done
10 Jan 2021 12:45:50,539 INFO : 47% Done
10 Jan 2021 12:45:51,062 DEBUG: Inserted 150 peptides
10 Jan 2021 12:45:51,562 INFO : 48% Done
10 Jan 2021 12:45:52,568 INFO : 49% Done
10 Jan 2021 12:45:53,579 INFO : 50% Done
10 Jan 2021 12:45:55,481 INFO : 51% Done
10 Jan 2021 12:45:56,077 INFO : 52% Done
10 Jan 2021 12:45:56,609 INFO : 53% Done
10 Jan 2021 12:45:57,025 INFO : 54% Done
10 Jan 2021 12:45:58,207 INFO : 55% Done
10 Jan 2021 12:45:58,643 INFO : 56% Done
10 Jan 2021 12:45:59,330 INFO : 57% Done
10 Jan 2021 12:45:59,943 INFO : 58% Done
10 Jan 2021 12:46:00,784 DEBUG: Inserted 200 peptides
10 Jan 2021 12:46:00,943 INFO : 59% Done
10 Jan 2021 12:46:01,370 INFO : 60% Done
10 Jan 2021 12:46:02,044 INFO : 61% Done
10 Jan 2021 12:46:02,598 INFO : 62% Done
10 Jan 2021 12:46:03,565 INFO : 63% Done
10 Jan 2021 12:46:04,100 INFO : 64% Done
10 Jan 2021 12:46:04,383 INFO : 65% Done
10 Jan 2021 12:46:05,078 INFO : 66% Done
10 Jan 2021 12:46:06,188 INFO : 67% Done
10 Jan 2021 12:46:06,623 INFO : 68% Done
10 Jan 2021 12:46:07,182 INFO : 69% Done
10 Jan 2021 12:46:07,882 INFO : 70% Done
10 Jan 2021 12:46:09,790 INFO : 71% Done
10 Jan 2021 12:46:10,504 INFO : 72% Done
10 Jan 2021 12:46:10,951 DEBUG: Inserted 250 peptides
10 Jan 2021 12:46:11,699 INFO : 73% Done
10 Jan 2021 12:46:12,656 INFO : 74% Done
10 Jan 2021 12:46:13,926 INFO : 75% Done
10 Jan 2021 12:46:14,534 INFO : 76% Done
10 Jan 2021 12:46:15,150 INFO : 77% Done
10 Jan 2021 12:46:15,747 INFO : 78% Done
10 Jan 2021 12:46:17,348 INFO : 79% Done
10 Jan 2021 12:46:18,169 INFO : 80% Done
10 Jan 2021 12:46:18,607 DEBUG: Total peptides inserted: 284
10 Jan 2021 12:46:18,609 INFO : Done parsing Skyline document.
10 Jan 2021 12:46:18,614 INFO : Calculating fold changes
10 Jan 2021 12:46:18,614 DEBUG: Calculating fold change for group comparison volcano, 1 of 1
10 Jan 2021 12:46:30,102 INFO : 98% Done
10 Jan 2021 12:46:30,102 INFO : Done calculating fold changes.
10 Jan 2021 12:46:30,105 INFO : Creating and populating temp tables for Proportion values
10 Jan 2021 12:46:30,609 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
10 Jan 2021 12:46:33,011 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
10 Jan 2021 12:46:33,943 INFO : Cleaning up temp tables
10 Jan 2021 12:46:34,220 INFO : Completed import of Skyline document from 20190428_Aging_Above_Chymotryptic_2020-12-11_16-46-20.sky.zip
10 Jan 2021 12:46:34,225 INFO : 100% Done
10 Jan 2021 12:46:34,231 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96229/20190428_Aging_Above_Chymotryptic_2020-12-11_16-46-20.sky.zip into the system
10 Jan 2021 12:46:34,254 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96228/20190427_Boiling_Above_Unspecific_2020-12-11_16-40-22/20190427_Boiling_Above_Unspecific.skyd into the system
10 Jan 2021 12:46:34,255 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96228/20190427_Boiling_Above_Unspecific_2020-12-11_16-40-22/20190427_Boiling_Above_Unspecific.skyd into the system
10 Jan 2021 12:46:34,255 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96228/20190427_Boiling_Above_Unspecific_2020-12-11_16-40-22.sky.zip into the system
10 Jan 2021 12:46:34,256 INFO : Starting import from 20190427_Boiling_Above_Unspecific_2020-12-11_16-40-22.sky.zip
10 Jan 2021 12:46:34,259 INFO : Starting to import Skyline document from 20190427_Boiling_Above_Unspecific_2020-12-11_16-40-22.sky.zip
10 Jan 2021 12:46:34,288 INFO : Expanding 20190427_Boiling_Above_Unspecific.blib
10 Jan 2021 12:46:35,324 INFO : Expanding 20190427_Boiling_Above_Unspecific.redundant.blib
10 Jan 2021 12:46:39,794 INFO : Expanding 20190427_Boiling_Above_Unspecific.skyd
10 Jan 2021 12:46:43,504 INFO : Expanding 20190427_Boiling_Above_Unspecific.sky.view
10 Jan 2021 12:46:43,505 INFO : Expanding 20190427_Boiling_Above_Unspecific.sky
10 Jan 2021 12:46:43,639 INFO : 1% Done
10 Jan 2021 12:46:45,556 DEBUG: Starting to load chromatogram headers
10 Jan 2021 12:46:45,588 DEBUG: Done loading chromatogram headers
10 Jan 2021 12:46:45,767 INFO : Inserting Gamma gliadin
10 Jan 2021 12:46:46,944 INFO : 2% Done
10 Jan 2021 12:46:47,221 DEBUG: Total peptides inserted: 12
10 Jan 2021 12:46:47,226 INFO : Inserting Gamma gliadin
10 Jan 2021 12:46:47,545 DEBUG: Total peptides inserted: 6
10 Jan 2021 12:46:47,547 INFO : Inserting Gamma gliadin
10 Jan 2021 12:46:47,814 DEBUG: Total peptides inserted: 6
10 Jan 2021 12:46:47,817 INFO : Inserting Gamma gliadin
10 Jan 2021 12:46:48,084 DEBUG: Total peptides inserted: 6
10 Jan 2021 12:46:48,086 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:46:48,493 INFO : 3% Done
10 Jan 2021 12:46:48,637 DEBUG: Total peptides inserted: 14
10 Jan 2021 12:46:48,640 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:46:49,118 DEBUG: Total peptides inserted: 15
10 Jan 2021 12:46:49,121 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:46:49,266 INFO : 4% Done
10 Jan 2021 12:46:49,668 DEBUG: Total peptides inserted: 14
10 Jan 2021 12:46:49,670 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:46:50,117 INFO : 5% Done
10 Jan 2021 12:46:50,378 DEBUG: Total peptides inserted: 15
10 Jan 2021 12:46:50,382 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:46:50,702 DEBUG: Total peptides inserted: 12
10 Jan 2021 12:46:50,702 INFO : Inserting Library Peptides
10 Jan 2021 12:46:51,314 INFO : 6% Done
10 Jan 2021 12:46:53,241 INFO : 7% Done
10 Jan 2021 12:46:54,417 INFO : 8% Done
10 Jan 2021 12:46:55,276 INFO : 9% Done
10 Jan 2021 12:46:55,986 INFO : 10% Done
10 Jan 2021 12:46:57,636 INFO : 11% Done
10 Jan 2021 12:46:58,561 INFO : 12% Done
10 Jan 2021 12:46:59,266 INFO : 13% Done
10 Jan 2021 12:46:59,556 DEBUG: Inserted 50 peptides
10 Jan 2021 12:47:00,144 INFO : 14% Done
10 Jan 2021 12:47:01,638 INFO : 15% Done
10 Jan 2021 12:47:02,732 INFO : 16% Done
10 Jan 2021 12:47:03,593 INFO : 17% Done
10 Jan 2021 12:47:04,799 INFO : 18% Done
10 Jan 2021 12:47:06,773 INFO : 19% Done
10 Jan 2021 12:47:07,914 INFO : 20% Done
10 Jan 2021 12:47:08,753 INFO : 21% Done
10 Jan 2021 12:47:09,309 DEBUG: Inserted 100 peptides
10 Jan 2021 12:47:10,090 INFO : 22% Done
10 Jan 2021 12:47:13,334 INFO : 23% Done
10 Jan 2021 12:47:14,323 INFO : 24% Done
10 Jan 2021 12:47:15,577 INFO : 25% Done
10 Jan 2021 12:47:16,754 INFO : 26% Done
10 Jan 2021 12:47:18,577 INFO : 27% Done
10 Jan 2021 12:47:19,682 INFO : 28% Done
10 Jan 2021 12:47:20,580 INFO : 29% Done
10 Jan 2021 12:47:20,844 DEBUG: Inserted 150 peptides
10 Jan 2021 12:47:21,482 INFO : 30% Done
10 Jan 2021 12:47:23,760 INFO : 31% Done
10 Jan 2021 12:47:24,699 INFO : 32% Done
10 Jan 2021 12:47:25,300 INFO : 33% Done
10 Jan 2021 12:47:26,231 INFO : 34% Done
10 Jan 2021 12:47:27,711 INFO : 35% Done
10 Jan 2021 12:47:28,510 INFO : 36% Done
10 Jan 2021 12:47:29,109 INFO : 37% Done
10 Jan 2021 12:47:30,191 INFO : 38% Done
10 Jan 2021 12:47:30,372 DEBUG: Inserted 200 peptides
10 Jan 2021 12:47:32,318 INFO : 39% Done
10 Jan 2021 12:47:33,278 INFO : 40% Done
10 Jan 2021 12:47:34,153 INFO : 41% Done
10 Jan 2021 12:47:34,856 INFO : 42% Done
10 Jan 2021 12:47:37,052 INFO : 43% Done
10 Jan 2021 12:47:37,711 INFO : 44% Done
10 Jan 2021 12:47:38,985 INFO : 45% Done
10 Jan 2021 12:47:38,985 DEBUG: Inserted 250 peptides
10 Jan 2021 12:47:39,925 INFO : 46% Done
10 Jan 2021 12:47:42,211 INFO : 47% Done
10 Jan 2021 12:47:43,351 INFO : 48% Done
10 Jan 2021 12:47:44,520 INFO : 49% Done
10 Jan 2021 12:47:45,730 INFO : 50% Done
10 Jan 2021 12:47:47,524 INFO : 51% Done
10 Jan 2021 12:47:48,382 INFO : 52% Done
10 Jan 2021 12:47:48,652 DEBUG: Inserted 300 peptides
10 Jan 2021 12:47:49,219 INFO : 53% Done
10 Jan 2021 12:47:49,941 INFO : 54% Done
10 Jan 2021 12:47:51,603 INFO : 55% Done
10 Jan 2021 12:47:52,462 INFO : 56% Done
10 Jan 2021 12:47:53,196 INFO : 57% Done
10 Jan 2021 12:47:54,125 INFO : 58% Done
10 Jan 2021 12:47:55,710 INFO : 59% Done
10 Jan 2021 12:47:56,278 DEBUG: Inserted 350 peptides
10 Jan 2021 12:47:56,571 INFO : 60% Done
10 Jan 2021 12:47:57,363 INFO : 61% Done
10 Jan 2021 12:47:58,199 INFO : 62% Done
10 Jan 2021 12:47:59,737 INFO : 63% Done
10 Jan 2021 12:48:00,531 INFO : 64% Done
10 Jan 2021 12:48:01,383 INFO : 65% Done
10 Jan 2021 12:48:02,150 INFO : 66% Done
10 Jan 2021 12:48:03,744 INFO : 67% Done
10 Jan 2021 12:48:04,590 INFO : 68% Done
10 Jan 2021 12:48:05,147 INFO : 69% Done
10 Jan 2021 12:48:05,147 DEBUG: Inserted 400 peptides
10 Jan 2021 12:48:05,900 INFO : 70% Done
10 Jan 2021 12:48:07,168 INFO : 71% Done
10 Jan 2021 12:48:08,079 INFO : 72% Done
10 Jan 2021 12:48:09,401 INFO : 73% Done
10 Jan 2021 12:48:10,558 INFO : 74% Done
10 Jan 2021 12:48:13,306 INFO : 75% Done
10 Jan 2021 12:48:14,788 INFO : 76% Done
10 Jan 2021 12:48:16,188 INFO : 77% Done
10 Jan 2021 12:48:17,155 DEBUG: Inserted 450 peptides
10 Jan 2021 12:48:17,401 INFO : 78% Done
10 Jan 2021 12:48:19,744 INFO : 79% Done
10 Jan 2021 12:48:20,710 INFO : 80% Done
10 Jan 2021 12:48:21,140 DEBUG: Total peptides inserted: 467
10 Jan 2021 12:48:21,141 INFO : Done parsing Skyline document.
10 Jan 2021 12:48:21,147 INFO : Calculating fold changes
10 Jan 2021 12:48:21,147 DEBUG: Calculating fold change for group comparison volcano, 1 of 1
10 Jan 2021 12:48:45,134 INFO : 98% Done
10 Jan 2021 12:48:45,134 INFO : Done calculating fold changes.
10 Jan 2021 12:48:45,137 INFO : Creating and populating temp tables for Proportion values
10 Jan 2021 12:48:45,952 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
10 Jan 2021 12:48:50,349 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
10 Jan 2021 12:48:51,196 INFO : Cleaning up temp tables
10 Jan 2021 12:48:51,480 INFO : Completed import of Skyline document from 20190427_Boiling_Above_Unspecific_2020-12-11_16-40-22.sky.zip
10 Jan 2021 12:48:51,489 INFO : 100% Done
10 Jan 2021 12:48:51,501 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96228/20190427_Boiling_Above_Unspecific_2020-12-11_16-40-22.sky.zip into the system
10 Jan 2021 12:48:51,517 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96227/20190427_Fermentation_Above_Unspecific_2020-12-11_16-43-40/20190427_Fermentation_Above_Unspecific.skyd into the system
10 Jan 2021 12:48:51,518 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96227/20190427_Fermentation_Above_Unspecific_2020-12-11_16-43-40/20190427_Fermentation_Above_Unspecific.skyd into the system
10 Jan 2021 12:48:51,518 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96227/20190427_Fermentation_Above_Unspecific_2020-12-11_16-43-40.sky.zip into the system
10 Jan 2021 12:48:51,522 INFO : Starting import from 20190427_Fermentation_Above_Unspecific_2020-12-11_16-43-40.sky.zip
10 Jan 2021 12:48:51,529 INFO : Starting to import Skyline document from 20190427_Fermentation_Above_Unspecific_2020-12-11_16-43-40.sky.zip
10 Jan 2021 12:48:51,543 INFO : Expanding 20190427_Fermentation_Above_Unspecific.blib
10 Jan 2021 12:48:52,944 INFO : Expanding 20190427_Fermentation_Above_Unspecific.redundant.blib
10 Jan 2021 12:48:55,589 INFO : Expanding 20190427_Fermentation_Above_Unspecific.skyd
10 Jan 2021 12:48:59,733 INFO : Expanding 20190427_Fermentation_Above_Unspecific.sky.view
10 Jan 2021 12:48:59,734 INFO : Expanding 20190427_Fermentation_Above_Unspecific.sky
10 Jan 2021 12:48:59,947 INFO : 1% Done
10 Jan 2021 12:49:01,381 DEBUG: Starting to load chromatogram headers
10 Jan 2021 12:49:01,405 DEBUG: Done loading chromatogram headers
10 Jan 2021 12:49:01,554 INFO : Inserting Gamma gliadin
10 Jan 2021 12:49:01,709 DEBUG: Total peptides inserted: 7
10 Jan 2021 12:49:01,712 INFO : Inserting Gamma gliadin
10 Jan 2021 12:49:01,855 DEBUG: Total peptides inserted: 4
10 Jan 2021 12:49:01,858 INFO : Inserting Gamma gliadin
10 Jan 2021 12:49:01,871 INFO : 2% Done
10 Jan 2021 12:49:02,420 DEBUG: Total peptides inserted: 6
10 Jan 2021 12:49:02,426 INFO : Inserting Gamma gliadin
10 Jan 2021 12:49:02,947 DEBUG: Total peptides inserted: 4
10 Jan 2021 12:49:02,950 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:49:03,422 DEBUG: Total peptides inserted: 10
10 Jan 2021 12:49:03,425 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:49:03,786 DEBUG: Total peptides inserted: 11
10 Jan 2021 12:49:03,789 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:49:03,818 INFO : 3% Done
10 Jan 2021 12:49:04,172 DEBUG: Total peptides inserted: 10
10 Jan 2021 12:49:04,175 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:49:04,331 INFO : 4% Done
10 Jan 2021 12:49:04,464 DEBUG: Total peptides inserted: 10
10 Jan 2021 12:49:04,467 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:49:04,630 DEBUG: Total peptides inserted: 8
10 Jan 2021 12:49:04,630 INFO : Inserting Library Peptides
10 Jan 2021 12:49:04,867 INFO : 5% Done
10 Jan 2021 12:49:05,278 INFO : 6% Done
10 Jan 2021 12:49:06,451 INFO : 7% Done
10 Jan 2021 12:49:07,102 INFO : 8% Done
10 Jan 2021 12:49:07,673 INFO : 9% Done
10 Jan 2021 12:49:08,353 INFO : 10% Done
10 Jan 2021 12:49:09,529 INFO : 11% Done
10 Jan 2021 12:49:10,256 INFO : 12% Done
10 Jan 2021 12:49:10,819 INFO : 13% Done
10 Jan 2021 12:49:11,384 INFO : 14% Done
10 Jan 2021 12:49:12,194 DEBUG: Inserted 50 peptides
10 Jan 2021 12:49:12,594 INFO : 15% Done
10 Jan 2021 12:49:13,153 INFO : 16% Done
10 Jan 2021 12:49:13,706 INFO : 17% Done
10 Jan 2021 12:49:14,539 INFO : 18% Done
10 Jan 2021 12:49:15,682 INFO : 19% Done
10 Jan 2021 12:49:16,085 INFO : 20% Done
10 Jan 2021 12:49:16,668 INFO : 21% Done
10 Jan 2021 12:49:17,014 INFO : 22% Done
10 Jan 2021 12:49:18,017 INFO : 23% Done
10 Jan 2021 12:49:18,423 INFO : 24% Done
10 Jan 2021 12:49:18,975 INFO : 25% Done
10 Jan 2021 12:49:19,412 INFO : 26% Done
10 Jan 2021 12:49:19,412 DEBUG: Inserted 100 peptides
10 Jan 2021 12:49:20,314 INFO : 27% Done
10 Jan 2021 12:49:20,846 INFO : 28% Done
10 Jan 2021 12:49:21,277 INFO : 29% Done
10 Jan 2021 12:49:21,707 INFO : 30% Done
10 Jan 2021 12:49:22,686 INFO : 31% Done
10 Jan 2021 12:49:23,098 INFO : 32% Done
10 Jan 2021 12:49:23,600 INFO : 33% Done
10 Jan 2021 12:49:24,007 INFO : 34% Done
10 Jan 2021 12:49:24,823 INFO : 35% Done
10 Jan 2021 12:49:25,398 INFO : 36% Done
10 Jan 2021 12:49:25,803 INFO : 37% Done
10 Jan 2021 12:49:25,913 DEBUG: Inserted 150 peptides
10 Jan 2021 12:49:26,317 INFO : 38% Done
10 Jan 2021 12:49:27,189 INFO : 39% Done
10 Jan 2021 12:49:27,732 INFO : 40% Done
10 Jan 2021 12:49:28,158 INFO : 41% Done
10 Jan 2021 12:49:28,546 INFO : 42% Done
10 Jan 2021 12:49:29,533 INFO : 43% Done
10 Jan 2021 12:49:29,944 INFO : 44% Done
10 Jan 2021 12:49:30,362 INFO : 45% Done
10 Jan 2021 12:49:30,907 INFO : 46% Done
10 Jan 2021 12:49:31,995 INFO : 47% Done
10 Jan 2021 12:49:32,207 DEBUG: Inserted 200 peptides
10 Jan 2021 12:49:32,514 INFO : 48% Done
10 Jan 2021 12:49:32,948 INFO : 49% Done
10 Jan 2021 12:49:33,414 INFO : 50% Done
10 Jan 2021 12:49:34,802 INFO : 51% Done
10 Jan 2021 12:49:35,393 INFO : 52% Done
10 Jan 2021 12:49:36,093 INFO : 53% Done
10 Jan 2021 12:49:36,771 INFO : 54% Done
10 Jan 2021 12:49:37,893 INFO : 55% Done
10 Jan 2021 12:49:38,659 INFO : 56% Done
10 Jan 2021 12:49:39,216 INFO : 57% Done
10 Jan 2021 12:49:39,357 DEBUG: Inserted 250 peptides
10 Jan 2021 12:49:39,777 INFO : 58% Done
10 Jan 2021 12:49:41,014 INFO : 59% Done
10 Jan 2021 12:49:41,554 INFO : 60% Done
10 Jan 2021 12:49:42,243 INFO : 61% Done
10 Jan 2021 12:49:42,897 INFO : 62% Done
10 Jan 2021 12:49:44,011 INFO : 63% Done
10 Jan 2021 12:49:44,671 INFO : 64% Done
10 Jan 2021 12:49:45,462 INFO : 65% Done
10 Jan 2021 12:49:46,022 INFO : 66% Done
10 Jan 2021 12:49:47,222 INFO : 67% Done
10 Jan 2021 12:49:47,764 INFO : 68% Done
10 Jan 2021 12:49:47,764 DEBUG: Inserted 300 peptides
10 Jan 2021 12:49:48,406 INFO : 69% Done
10 Jan 2021 12:49:48,806 INFO : 70% Done
10 Jan 2021 12:49:50,147 INFO : 71% Done
10 Jan 2021 12:49:50,816 INFO : 72% Done
10 Jan 2021 12:49:51,389 INFO : 73% Done
10 Jan 2021 12:49:52,062 INFO : 74% Done
10 Jan 2021 12:49:53,293 INFO : 75% Done
10 Jan 2021 12:49:53,718 INFO : 76% Done
10 Jan 2021 12:49:54,394 INFO : 77% Done
10 Jan 2021 12:49:55,069 INFO : 78% Done
10 Jan 2021 12:49:56,282 INFO : 79% Done
10 Jan 2021 12:49:56,425 DEBUG: Inserted 350 peptides
10 Jan 2021 12:49:56,825 INFO : 80% Done
10 Jan 2021 12:49:57,242 DEBUG: Total peptides inserted: 354
10 Jan 2021 12:49:57,243 INFO : Done parsing Skyline document.
10 Jan 2021 12:49:57,248 INFO : Calculating fold changes
10 Jan 2021 12:49:57,248 DEBUG: Calculating fold change for group comparison volcano, 1 of 1
10 Jan 2021 12:50:12,627 INFO : 98% Done
10 Jan 2021 12:50:12,627 INFO : Done calculating fold changes.
10 Jan 2021 12:50:12,629 INFO : Creating and populating temp tables for Proportion values
10 Jan 2021 12:50:13,233 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
10 Jan 2021 12:50:17,581 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
10 Jan 2021 12:50:19,173 INFO : Cleaning up temp tables
10 Jan 2021 12:50:19,495 INFO : Completed import of Skyline document from 20190427_Fermentation_Above_Unspecific_2020-12-11_16-43-40.sky.zip
10 Jan 2021 12:50:19,503 INFO : 100% Done
10 Jan 2021 12:50:19,515 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96227/20190427_Fermentation_Above_Unspecific_2020-12-11_16-43-40.sky.zip into the system
10 Jan 2021 12:50:19,562 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96226/20190427_Mashing_Above_Unspecific_2020-12-11_16-37-56/20190427_Mashing_Above_Unspecific.skyd into the system
10 Jan 2021 12:50:19,564 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96226/20190427_Mashing_Above_Unspecific_2020-12-11_16-37-56/20190427_Mashing_Above_Unspecific.skyd into the system
10 Jan 2021 12:50:19,564 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96226/20190427_Mashing_Above_Unspecific_2020-12-11_16-37-56.sky.zip into the system
10 Jan 2021 12:50:19,566 INFO : Starting import from 20190427_Mashing_Above_Unspecific_2020-12-11_16-37-56.sky.zip
10 Jan 2021 12:50:19,571 INFO : Starting to import Skyline document from 20190427_Mashing_Above_Unspecific_2020-12-11_16-37-56.sky.zip
10 Jan 2021 12:50:19,646 INFO : Expanding 20190427_Mashing_Above_Unspecific.blib
10 Jan 2021 12:50:21,273 INFO : Expanding 20190427_Mashing_Above_Unspecific.redundant.blib
10 Jan 2021 12:50:26,208 INFO : Expanding 20190427_Mashing_Above_Unspecific.skyd
10 Jan 2021 12:50:29,130 INFO : Expanding 20190427_Mashing_Above_Unspecific.sky.view
10 Jan 2021 12:50:29,130 INFO : Expanding 20190427_Mashing_Above_Unspecific.sky
10 Jan 2021 12:50:29,303 INFO : 1% Done
10 Jan 2021 12:50:31,001 DEBUG: Starting to load chromatogram headers
10 Jan 2021 12:50:31,027 DEBUG: Done loading chromatogram headers
10 Jan 2021 12:50:31,279 INFO : Inserting Gamma gliadin
10 Jan 2021 12:50:32,080 DEBUG: Total peptides inserted: 11
10 Jan 2021 12:50:32,084 INFO : Inserting Gamma gliadin
10 Jan 2021 12:50:32,092 INFO : 2% Done
10 Jan 2021 12:50:33,067 DEBUG: Total peptides inserted: 7
10 Jan 2021 12:50:33,074 INFO : Inserting Gamma gliadin
10 Jan 2021 12:50:33,611 DEBUG: Total peptides inserted: 6
10 Jan 2021 12:50:33,615 INFO : Inserting Gamma gliadin
10 Jan 2021 12:50:34,053 INFO : 3% Done
10 Jan 2021 12:50:34,476 DEBUG: Total peptides inserted: 7
10 Jan 2021 12:50:34,480 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:50:35,136 DEBUG: Total peptides inserted: 11
10 Jan 2021 12:50:35,141 INFO : 4% Done
10 Jan 2021 12:50:35,146 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:50:35,760 DEBUG: Total peptides inserted: 13
10 Jan 2021 12:50:35,763 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:50:35,968 INFO : 5% Done
10 Jan 2021 12:50:36,376 DEBUG: Total peptides inserted: 10
10 Jan 2021 12:50:36,379 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:50:36,675 INFO : 6% Done
10 Jan 2021 12:50:36,821 DEBUG: Total peptides inserted: 13
10 Jan 2021 12:50:36,823 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:50:36,919 DEBUG: Total peptides inserted: 10
10 Jan 2021 12:50:36,919 INFO : Inserting Library Peptides
10 Jan 2021 12:50:37,686 INFO : 7% Done
10 Jan 2021 12:50:38,239 INFO : 8% Done
10 Jan 2021 12:50:38,833 INFO : 9% Done
10 Jan 2021 12:50:39,373 INFO : 10% Done
10 Jan 2021 12:50:40,870 INFO : 11% Done
10 Jan 2021 12:50:42,126 INFO : 12% Done
10 Jan 2021 12:50:43,085 INFO : 13% Done
10 Jan 2021 12:50:44,359 INFO : 14% Done
10 Jan 2021 12:50:46,653 INFO : 15% Done
10 Jan 2021 12:50:47,197 DEBUG: Inserted 50 peptides
10 Jan 2021 12:50:48,043 INFO : 16% Done
10 Jan 2021 12:50:48,709 INFO : 17% Done
10 Jan 2021 12:50:49,474 INFO : 18% Done
10 Jan 2021 12:50:50,705 INFO : 19% Done
10 Jan 2021 12:50:51,283 INFO : 20% Done
10 Jan 2021 12:50:51,854 INFO : 21% Done
10 Jan 2021 12:50:52,678 INFO : 22% Done
10 Jan 2021 12:50:53,933 INFO : 23% Done
10 Jan 2021 12:50:54,644 INFO : 24% Done
10 Jan 2021 12:50:55,449 INFO : 25% Done
10 Jan 2021 12:50:55,606 DEBUG: Inserted 100 peptides
10 Jan 2021 12:50:56,034 INFO : 26% Done
10 Jan 2021 12:50:57,288 INFO : 27% Done
10 Jan 2021 12:50:57,973 INFO : 28% Done
10 Jan 2021 12:50:58,700 INFO : 29% Done
10 Jan 2021 12:50:59,924 INFO : 30% Done
10 Jan 2021 12:51:02,213 INFO : 31% Done
10 Jan 2021 12:51:03,008 INFO : 32% Done
10 Jan 2021 12:51:03,953 INFO : 33% Done
10 Jan 2021 12:51:04,933 INFO : 34% Done
10 Jan 2021 12:51:07,132 INFO : 35% Done
10 Jan 2021 12:51:07,725 DEBUG: Inserted 150 peptides
10 Jan 2021 12:51:07,925 INFO : 36% Done
10 Jan 2021 12:51:08,959 INFO : 37% Done
10 Jan 2021 12:51:09,704 INFO : 38% Done
10 Jan 2021 12:51:11,756 INFO : 39% Done
10 Jan 2021 12:51:12,806 INFO : 40% Done
10 Jan 2021 12:51:13,942 INFO : 41% Done
10 Jan 2021 12:51:14,666 INFO : 42% Done
10 Jan 2021 12:51:16,656 INFO : 43% Done
10 Jan 2021 12:51:17,308 INFO : 44% Done
10 Jan 2021 12:51:18,040 INFO : 45% Done
10 Jan 2021 12:51:18,566 INFO : 46% Done
10 Jan 2021 12:51:18,842 DEBUG: Inserted 200 peptides
10 Jan 2021 12:51:19,909 INFO : 47% Done
10 Jan 2021 12:51:20,462 INFO : 48% Done
10 Jan 2021 12:51:20,946 INFO : 49% Done
10 Jan 2021 12:51:21,734 INFO : 50% Done
10 Jan 2021 12:51:22,889 INFO : 51% Done
10 Jan 2021 12:51:23,518 INFO : 52% Done
10 Jan 2021 12:51:24,165 INFO : 53% Done
10 Jan 2021 12:51:24,674 INFO : 54% Done
10 Jan 2021 12:51:25,794 INFO : 55% Done
10 Jan 2021 12:51:26,042 DEBUG: Inserted 250 peptides
10 Jan 2021 12:51:26,419 INFO : 56% Done
10 Jan 2021 12:51:26,921 INFO : 57% Done
10 Jan 2021 12:51:27,863 INFO : 58% Done
10 Jan 2021 12:51:29,615 INFO : 59% Done
10 Jan 2021 12:51:30,191 INFO : 60% Done
10 Jan 2021 12:51:30,860 INFO : 61% Done
10 Jan 2021 12:51:31,406 INFO : 62% Done
10 Jan 2021 12:51:32,927 INFO : 63% Done
10 Jan 2021 12:51:33,667 INFO : 64% Done
10 Jan 2021 12:51:34,516 INFO : 65% Done
10 Jan 2021 12:51:35,025 DEBUG: Inserted 300 peptides
10 Jan 2021 12:51:35,350 INFO : 66% Done
10 Jan 2021 12:51:36,650 INFO : 67% Done
10 Jan 2021 12:51:37,309 INFO : 68% Done
10 Jan 2021 12:51:38,030 INFO : 69% Done
10 Jan 2021 12:51:38,978 INFO : 70% Done
10 Jan 2021 12:51:40,881 INFO : 71% Done
10 Jan 2021 12:51:41,988 INFO : 72% Done
10 Jan 2021 12:51:42,701 INFO : 73% Done
10 Jan 2021 12:51:43,566 INFO : 74% Done
10 Jan 2021 12:51:44,931 INFO : 75% Done
10 Jan 2021 12:51:45,140 DEBUG: Inserted 350 peptides
10 Jan 2021 12:51:45,766 INFO : 76% Done
10 Jan 2021 12:51:46,703 INFO : 77% Done
10 Jan 2021 12:51:47,442 INFO : 78% Done
10 Jan 2021 12:51:49,086 INFO : 79% Done
10 Jan 2021 12:51:50,310 INFO : 80% Done
10 Jan 2021 12:51:50,844 DEBUG: Total peptides inserted: 373
10 Jan 2021 12:51:50,846 INFO : Done parsing Skyline document.
10 Jan 2021 12:51:50,850 INFO : Calculating fold changes
10 Jan 2021 12:51:50,850 DEBUG: Calculating fold change for group comparison volcano, 1 of 1
10 Jan 2021 12:52:09,135 INFO : 98% Done
10 Jan 2021 12:52:09,135 INFO : Done calculating fold changes.
10 Jan 2021 12:52:09,138 INFO : Creating and populating temp tables for Proportion values
10 Jan 2021 12:52:09,801 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
10 Jan 2021 12:52:14,172 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
10 Jan 2021 12:52:15,552 INFO : Cleaning up temp tables
10 Jan 2021 12:52:15,928 INFO : Completed import of Skyline document from 20190427_Mashing_Above_Unspecific_2020-12-11_16-37-56.sky.zip
10 Jan 2021 12:52:15,937 INFO : 100% Done
10 Jan 2021 12:52:15,950 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96226/20190427_Mashing_Above_Unspecific_2020-12-11_16-37-56.sky.zip into the system
10 Jan 2021 12:52:16,028 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96225/20190427_Boiling_Above_Chymotryptic_2020-12-11_16-39-41/20190427_Boiling_Above_Chymotryptic.skyd into the system
10 Jan 2021 12:52:16,030 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96225/20190427_Boiling_Above_Chymotryptic_2020-12-11_16-39-41/20190427_Boiling_Above_Chymotryptic.skyd into the system
10 Jan 2021 12:52:16,030 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96225/20190427_Boiling_Above_Chymotryptic_2020-12-11_16-39-41.sky.zip into the system
10 Jan 2021 12:52:16,035 INFO : Starting import from 20190427_Boiling_Above_Chymotryptic_2020-12-11_16-39-41.sky.zip
10 Jan 2021 12:52:16,042 INFO : Starting to import Skyline document from 20190427_Boiling_Above_Chymotryptic_2020-12-11_16-39-41.sky.zip
10 Jan 2021 12:52:16,167 INFO : Expanding 20190427_Boiling_Above_Chymotryptic.blib
10 Jan 2021 12:52:17,614 INFO : Expanding 20190427_Boiling_Above_Chymotryptic.redundant.blib
10 Jan 2021 12:52:23,526 INFO : Expanding 20190427_Boiling_Above_Chymotryptic.skyd
10 Jan 2021 12:52:25,640 INFO : Expanding 20190427_Boiling_Above_Chymotryptic.sky.view
10 Jan 2021 12:52:25,640 INFO : Expanding 20190427_Boiling_Above_Chymotryptic.sky
10 Jan 2021 12:52:25,710 INFO : 1% Done
10 Jan 2021 12:52:26,604 DEBUG: Starting to load chromatogram headers
10 Jan 2021 12:52:26,620 DEBUG: Done loading chromatogram headers
10 Jan 2021 12:52:26,723 INFO : Inserting Gamma gliadin
10 Jan 2021 12:52:26,795 INFO : 2% Done
10 Jan 2021 12:52:28,382 DEBUG: Total peptides inserted: 17
10 Jan 2021 12:52:28,392 INFO : 3% Done
10 Jan 2021 12:52:28,396 INFO : Inserting Gamma gliadin
10 Jan 2021 12:52:28,926 INFO : 4% Done
10 Jan 2021 12:52:29,340 DEBUG: Total peptides inserted: 12
10 Jan 2021 12:52:29,347 INFO : Inserting Gamma gliadin
10 Jan 2021 12:52:29,965 INFO : 5% Done
10 Jan 2021 12:52:30,129 DEBUG: Total peptides inserted: 14
10 Jan 2021 12:52:30,135 INFO : Inserting Gamma gliadin
10 Jan 2021 12:52:30,735 INFO : 6% Done
10 Jan 2021 12:52:31,083 DEBUG: Total peptides inserted: 11
10 Jan 2021 12:52:31,088 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:52:31,813 DEBUG: Total peptides inserted: 17
10 Jan 2021 12:52:31,820 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:52:32,175 INFO : 7% Done
10 Jan 2021 12:52:32,598 DEBUG: Total peptides inserted: 15
10 Jan 2021 12:52:32,603 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:52:33,200 INFO : 8% Done
10 Jan 2021 12:52:33,365 DEBUG: Total peptides inserted: 16
10 Jan 2021 12:52:33,371 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:52:33,724 INFO : 9% Done
10 Jan 2021 12:52:33,770 DEBUG: Total peptides inserted: 15
10 Jan 2021 12:52:33,773 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:52:34,052 INFO : 10% Done
10 Jan 2021 12:52:34,233 DEBUG: Total peptides inserted: 20
10 Jan 2021 12:52:34,233 INFO : Inserting Library Peptides
10 Jan 2021 12:52:34,671 INFO : 11% Done
10 Jan 2021 12:52:34,899 INFO : 12% Done
10 Jan 2021 12:52:35,396 INFO : 13% Done
10 Jan 2021 12:52:35,693 INFO : 14% Done
10 Jan 2021 12:52:36,622 INFO : 15% Done
10 Jan 2021 12:52:37,142 INFO : 16% Done
10 Jan 2021 12:52:37,513 INFO : 17% Done
10 Jan 2021 12:52:38,201 INFO : 18% Done
10 Jan 2021 12:52:39,600 INFO : 19% Done
10 Jan 2021 12:52:40,282 INFO : 20% Done
10 Jan 2021 12:52:41,061 INFO : 21% Done
10 Jan 2021 12:52:41,803 INFO : 22% Done
10 Jan 2021 12:52:43,126 INFO : 23% Done
10 Jan 2021 12:52:43,881 INFO : 24% Done
10 Jan 2021 12:52:44,654 INFO : 25% Done
10 Jan 2021 12:52:45,410 INFO : 26% Done
10 Jan 2021 12:52:45,410 DEBUG: Inserted 50 peptides
10 Jan 2021 12:52:47,045 INFO : 27% Done
10 Jan 2021 12:52:47,568 INFO : 28% Done
10 Jan 2021 12:52:48,521 INFO : 29% Done
10 Jan 2021 12:52:49,298 INFO : 30% Done
10 Jan 2021 12:52:50,575 INFO : 31% Done
10 Jan 2021 12:52:51,347 INFO : 32% Done
10 Jan 2021 12:52:51,900 INFO : 33% Done
10 Jan 2021 12:52:52,853 INFO : 34% Done
10 Jan 2021 12:52:54,274 INFO : 35% Done
10 Jan 2021 12:52:54,902 INFO : 36% Done
10 Jan 2021 12:52:55,607 INFO : 37% Done
10 Jan 2021 12:52:56,593 INFO : 38% Done
10 Jan 2021 12:52:57,927 INFO : 39% Done
10 Jan 2021 12:52:58,702 INFO : 40% Done
10 Jan 2021 12:52:59,495 INFO : 41% Done
10 Jan 2021 12:53:00,182 INFO : 42% Done
10 Jan 2021 12:53:01,290 DEBUG: Inserted 100 peptides
10 Jan 2021 12:53:01,540 INFO : 43% Done
10 Jan 2021 12:53:02,403 INFO : 44% Done
10 Jan 2021 12:53:03,226 INFO : 45% Done
10 Jan 2021 12:53:03,790 INFO : 46% Done
10 Jan 2021 12:53:05,668 INFO : 47% Done
10 Jan 2021 12:53:06,159 INFO : 48% Done
10 Jan 2021 12:53:06,953 INFO : 49% Done
10 Jan 2021 12:53:07,692 INFO : 50% Done
10 Jan 2021 12:53:09,092 INFO : 51% Done
10 Jan 2021 12:53:09,820 INFO : 52% Done
10 Jan 2021 12:53:10,323 INFO : 53% Done
10 Jan 2021 12:53:11,040 INFO : 54% Done
10 Jan 2021 12:53:12,489 INFO : 55% Done
10 Jan 2021 12:53:13,267 INFO : 56% Done
10 Jan 2021 12:53:14,121 INFO : 57% Done
10 Jan 2021 12:53:14,675 INFO : 58% Done
10 Jan 2021 12:53:14,676 DEBUG: Inserted 150 peptides
10 Jan 2021 12:53:16,351 INFO : 59% Done
10 Jan 2021 12:53:17,075 INFO : 60% Done
10 Jan 2021 12:53:17,857 INFO : 61% Done
10 Jan 2021 12:53:18,118 INFO : 62% Done
10 Jan 2021 12:53:19,516 INFO : 63% Done
10 Jan 2021 12:53:20,106 INFO : 64% Done
10 Jan 2021 12:53:20,555 INFO : 65% Done
10 Jan 2021 12:53:21,358 INFO : 66% Done
10 Jan 2021 12:53:22,568 INFO : 67% Done
10 Jan 2021 12:53:23,132 INFO : 68% Done
10 Jan 2021 12:53:23,754 INFO : 69% Done
10 Jan 2021 12:53:24,137 INFO : 70% Done
10 Jan 2021 12:53:25,191 INFO : 71% Done
10 Jan 2021 12:53:25,666 INFO : 72% Done
10 Jan 2021 12:53:26,128 INFO : 73% Done
10 Jan 2021 12:53:26,582 INFO : 74% Done
10 Jan 2021 12:53:27,149 DEBUG: Inserted 200 peptides
10 Jan 2021 12:53:27,299 INFO : 75% Done
10 Jan 2021 12:53:27,704 INFO : 76% Done
10 Jan 2021 12:53:28,102 INFO : 77% Done
10 Jan 2021 12:53:28,487 INFO : 78% Done
10 Jan 2021 12:53:29,241 INFO : 79% Done
10 Jan 2021 12:53:29,642 INFO : 80% Done
10 Jan 2021 12:53:29,915 DEBUG: Total peptides inserted: 215
10 Jan 2021 12:53:29,916 INFO : Done parsing Skyline document.
10 Jan 2021 12:53:29,920 INFO : Calculating fold changes
10 Jan 2021 12:53:29,920 DEBUG: Calculating fold change for group comparison volcano, 1 of 1
10 Jan 2021 12:53:41,144 INFO : 98% Done
10 Jan 2021 12:53:41,144 INFO : Done calculating fold changes.
10 Jan 2021 12:53:41,146 INFO : Creating and populating temp tables for Proportion values
10 Jan 2021 12:53:41,548 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
10 Jan 2021 12:53:44,646 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
10 Jan 2021 12:53:45,138 INFO : Cleaning up temp tables
10 Jan 2021 12:53:45,505 INFO : Completed import of Skyline document from 20190427_Boiling_Above_Chymotryptic_2020-12-11_16-39-41.sky.zip
10 Jan 2021 12:53:45,510 INFO : 100% Done
10 Jan 2021 12:53:45,516 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96225/20190427_Boiling_Above_Chymotryptic_2020-12-11_16-39-41.sky.zip into the system
10 Jan 2021 12:53:45,542 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96224/20190427_Wheat_Malting_Above_Unspecific_2020-12-11_16-35-24/20190427_Wheat_Malting_Above_Unspecific.skyd into the system
10 Jan 2021 12:53:45,543 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96224/20190427_Wheat_Malting_Above_Unspecific_2020-12-11_16-35-24/20190427_Wheat_Malting_Above_Unspecific.skyd into the system
10 Jan 2021 12:53:45,543 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96224/20190427_Wheat_Malting_Above_Unspecific_2020-12-11_16-35-24.sky.zip into the system
10 Jan 2021 12:53:45,547 INFO : Starting import from 20190427_Wheat_Malting_Above_Unspecific_2020-12-11_16-35-24.sky.zip
10 Jan 2021 12:53:45,552 INFO : Starting to import Skyline document from 20190427_Wheat_Malting_Above_Unspecific_2020-12-11_16-35-24.sky.zip
10 Jan 2021 12:53:45,582 INFO : Expanding 20190427_Wheat_Malting_Above_Unspecific.blib
10 Jan 2021 12:53:46,854 INFO : Expanding 20190427_Wheat_Malting_Above_Unspecific.redundant.blib
10 Jan 2021 12:53:51,877 INFO : Expanding 20190427_Wheat_Malting_Above_Unspecific.skyd
10 Jan 2021 12:53:53,266 INFO : Expanding 20190427_Wheat_Malting_Above_Unspecific.sky.view
10 Jan 2021 12:53:53,266 INFO : Expanding 20190427_Wheat_Malting_Above_Unspecific.sky
10 Jan 2021 12:53:53,400 INFO : 1% Done
10 Jan 2021 12:53:55,438 DEBUG: Starting to load chromatogram headers
10 Jan 2021 12:53:55,467 DEBUG: Done loading chromatogram headers
10 Jan 2021 12:53:55,607 INFO : Inserting Gamma gliadin
10 Jan 2021 12:53:56,266 INFO : 2% Done
10 Jan 2021 12:53:57,887 INFO : 3% Done
10 Jan 2021 12:53:58,751 DEBUG: Total peptides inserted: 25
10 Jan 2021 12:53:58,754 INFO : Inserting Gamma gliadin
10 Jan 2021 12:53:58,765 INFO : 4% Done
10 Jan 2021 12:53:59,655 INFO : 5% Done
10 Jan 2021 12:53:59,955 DEBUG: Total peptides inserted: 18
10 Jan 2021 12:53:59,959 INFO : Inserting Gamma gliadin
10 Jan 2021 12:54:00,693 INFO : 6% Done
10 Jan 2021 12:54:00,974 DEBUG: Total peptides inserted: 21
10 Jan 2021 12:54:00,978 INFO : Inserting Gamma gliadin
10 Jan 2021 12:54:02,596 DEBUG: Total peptides inserted: 17
10 Jan 2021 12:54:02,601 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:54:03,208 INFO : 7% Done
10 Jan 2021 12:54:04,241 DEBUG: Total peptides inserted: 22
10 Jan 2021 12:54:04,247 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:54:04,985 INFO : 8% Done
10 Jan 2021 12:54:06,408 INFO : 9% Done
10 Jan 2021 12:54:07,398 DEBUG: Total peptides inserted: 30
10 Jan 2021 12:54:07,404 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:54:07,788 INFO : 10% Done
10 Jan 2021 12:54:09,617 DEBUG: Total peptides inserted: 23
10 Jan 2021 12:54:09,622 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:54:11,118 INFO : 11% Done
10 Jan 2021 12:54:11,544 DEBUG: Total peptides inserted: 28
10 Jan 2021 12:54:11,549 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:54:12,688 DEBUG: Total peptides inserted: 21
10 Jan 2021 12:54:12,689 INFO : Inserting Library Peptides
10 Jan 2021 12:54:12,700 INFO : 12% Done
10 Jan 2021 12:54:13,960 INFO : 13% Done
10 Jan 2021 12:54:15,649 INFO : 14% Done
10 Jan 2021 12:54:16,922 INFO : 15% Done
10 Jan 2021 12:54:17,500 INFO : 16% Done
10 Jan 2021 12:54:18,179 INFO : 17% Done
10 Jan 2021 12:54:18,704 INFO : 18% Done
10 Jan 2021 12:54:19,997 INFO : 19% Done
10 Jan 2021 12:54:20,561 INFO : 20% Done
10 Jan 2021 12:54:21,327 INFO : 21% Done
10 Jan 2021 12:54:21,327 DEBUG: Inserted 50 peptides
10 Jan 2021 12:54:22,208 INFO : 22% Done
10 Jan 2021 12:54:23,785 INFO : 23% Done
10 Jan 2021 12:54:25,059 INFO : 24% Done
10 Jan 2021 12:54:26,239 INFO : 25% Done
10 Jan 2021 12:54:27,461 INFO : 26% Done
10 Jan 2021 12:54:29,713 INFO : 27% Done
10 Jan 2021 12:54:30,565 INFO : 28% Done
10 Jan 2021 12:54:32,025 INFO : 29% Done
10 Jan 2021 12:54:33,197 INFO : 30% Done
10 Jan 2021 12:54:33,399 DEBUG: Inserted 100 peptides
10 Jan 2021 12:54:35,440 INFO : 31% Done
10 Jan 2021 12:54:36,396 INFO : 32% Done
10 Jan 2021 12:54:37,809 INFO : 33% Done
10 Jan 2021 12:54:38,719 INFO : 34% Done
10 Jan 2021 12:54:40,925 INFO : 35% Done
10 Jan 2021 12:54:41,657 INFO : 36% Done
10 Jan 2021 12:54:42,510 INFO : 37% Done
10 Jan 2021 12:54:43,384 INFO : 38% Done
10 Jan 2021 12:54:44,766 DEBUG: Inserted 150 peptides
10 Jan 2021 12:54:45,796 INFO : 39% Done
10 Jan 2021 12:54:47,056 INFO : 40% Done
10 Jan 2021 12:54:47,989 INFO : 41% Done
10 Jan 2021 12:54:48,811 INFO : 42% Done
10 Jan 2021 12:54:50,597 INFO : 43% Done
10 Jan 2021 12:54:51,640 INFO : 44% Done
10 Jan 2021 12:54:52,744 INFO : 45% Done
10 Jan 2021 12:54:53,947 INFO : 46% Done
10 Jan 2021 12:54:54,666 DEBUG: Inserted 200 peptides
10 Jan 2021 12:54:55,221 INFO : 47% Done
10 Jan 2021 12:54:55,680 INFO : 48% Done
10 Jan 2021 12:54:56,549 INFO : 49% Done
10 Jan 2021 12:54:57,745 INFO : 50% Done
10 Jan 2021 12:54:59,987 INFO : 51% Done
10 Jan 2021 12:55:01,038 INFO : 52% Done
10 Jan 2021 12:55:02,311 INFO : 53% Done
10 Jan 2021 12:55:03,480 INFO : 54% Done
10 Jan 2021 12:55:04,309 DEBUG: Inserted 250 peptides
10 Jan 2021 12:55:05,368 INFO : 55% Done
10 Jan 2021 12:55:06,367 INFO : 56% Done
10 Jan 2021 12:55:07,679 INFO : 57% Done
10 Jan 2021 12:55:08,717 INFO : 58% Done
10 Jan 2021 12:55:11,180 INFO : 59% Done
10 Jan 2021 12:55:11,999 INFO : 60% Done
10 Jan 2021 12:55:13,396 INFO : 61% Done
10 Jan 2021 12:55:14,980 INFO : 62% Done
10 Jan 2021 12:55:16,070 DEBUG: Inserted 300 peptides
10 Jan 2021 12:55:16,922 INFO : 63% Done
10 Jan 2021 12:55:18,076 INFO : 64% Done
10 Jan 2021 12:55:19,069 INFO : 65% Done
10 Jan 2021 12:55:20,319 INFO : 66% Done
10 Jan 2021 12:55:22,515 INFO : 67% Done
10 Jan 2021 12:55:23,783 INFO : 68% Done
10 Jan 2021 12:55:25,048 INFO : 69% Done
10 Jan 2021 12:55:26,018 INFO : 70% Done
10 Jan 2021 12:55:27,079 INFO : 71% Done
10 Jan 2021 12:55:27,182 DEBUG: Inserted 350 peptides
10 Jan 2021 12:55:27,677 INFO : 72% Done
10 Jan 2021 12:55:28,082 INFO : 73% Done
10 Jan 2021 12:55:28,788 INFO : 74% Done
10 Jan 2021 12:55:29,941 INFO : 75% Done
10 Jan 2021 12:55:30,559 INFO : 76% Done
10 Jan 2021 12:55:30,968 INFO : 77% Done
10 Jan 2021 12:55:31,690 INFO : 78% Done
10 Jan 2021 12:55:32,752 INFO : 79% Done
10 Jan 2021 12:55:33,036 DEBUG: Inserted 400 peptides
10 Jan 2021 12:55:33,359 INFO : 80% Done
10 Jan 2021 12:55:33,673 DEBUG: Total peptides inserted: 405
10 Jan 2021 12:55:33,674 INFO : Done parsing Skyline document.
10 Jan 2021 12:55:33,678 INFO : Calculating fold changes
10 Jan 2021 12:55:33,678 DEBUG: Calculating fold change for group comparison volcano, 1 of 1
10 Jan 2021 12:56:00,317 INFO : 98% Done
10 Jan 2021 12:56:00,317 INFO : Done calculating fold changes.
10 Jan 2021 12:56:00,319 INFO : Creating and populating temp tables for Proportion values
10 Jan 2021 12:56:01,003 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
10 Jan 2021 12:56:05,498 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
10 Jan 2021 12:56:06,295 INFO : Cleaning up temp tables
10 Jan 2021 12:56:06,743 INFO : Completed import of Skyline document from 20190427_Wheat_Malting_Above_Unspecific_2020-12-11_16-35-24.sky.zip
10 Jan 2021 12:56:06,748 INFO : 100% Done
10 Jan 2021 12:56:06,754 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96224/20190427_Wheat_Malting_Above_Unspecific_2020-12-11_16-35-24.sky.zip into the system
10 Jan 2021 12:56:06,765 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96223/20190427_Fermentation_Above_Chymotryptic_2020-12-11_16-43-04/20190427_Fermentation_Above_Chymotryptic.skyd into the system
10 Jan 2021 12:56:06,766 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96223/20190427_Fermentation_Above_Chymotryptic_2020-12-11_16-43-04/20190427_Fermentation_Above_Chymotryptic.skyd into the system
10 Jan 2021 12:56:06,766 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96223/20190427_Fermentation_Above_Chymotryptic_2020-12-11_16-43-04.sky.zip into the system
10 Jan 2021 12:56:06,767 INFO : Starting import from 20190427_Fermentation_Above_Chymotryptic_2020-12-11_16-43-04.sky.zip
10 Jan 2021 12:56:06,770 INFO : Starting to import Skyline document from 20190427_Fermentation_Above_Chymotryptic_2020-12-11_16-43-04.sky.zip
10 Jan 2021 12:56:06,800 INFO : Expanding 20190427_Fermentation_Above_Chymotryptic.blib
10 Jan 2021 12:56:07,803 INFO : Expanding 20190427_Fermentation_Above_Chymotryptic.redundant.blib
10 Jan 2021 12:56:12,021 INFO : Expanding 20190427_Fermentation_Above_Chymotryptic.skyd
10 Jan 2021 12:56:14,394 INFO : Expanding 20190427_Fermentation_Above_Chymotryptic.sky.view
10 Jan 2021 12:56:14,395 INFO : Expanding 20190427_Fermentation_Above_Chymotryptic.sky
10 Jan 2021 12:56:14,467 INFO : 2% Done
10 Jan 2021 12:56:15,100 DEBUG: Starting to load chromatogram headers
10 Jan 2021 12:56:15,111 DEBUG: Done loading chromatogram headers
10 Jan 2021 12:56:15,272 INFO : Inserting Gamma gliadin
10 Jan 2021 12:56:15,674 DEBUG: Total peptides inserted: 7
10 Jan 2021 12:56:15,679 INFO : Inserting Gamma gliadin
10 Jan 2021 12:56:16,113 INFO : 3% Done
10 Jan 2021 12:56:16,626 DEBUG: Total peptides inserted: 20
10 Jan 2021 12:56:16,633 INFO : Inserting Gamma gliadin
10 Jan 2021 12:56:16,660 INFO : 4% Done
10 Jan 2021 12:56:17,413 DEBUG: Total peptides inserted: 17
10 Jan 2021 12:56:17,418 INFO : Inserting Gamma gliadin
10 Jan 2021 12:56:17,445 INFO : 5% Done
10 Jan 2021 12:56:18,104 INFO : 6% Done
10 Jan 2021 12:56:18,153 DEBUG: Total peptides inserted: 16
10 Jan 2021 12:56:18,157 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:56:18,598 DEBUG: Total peptides inserted: 14
10 Jan 2021 12:56:18,604 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:56:19,482 DEBUG: Total peptides inserted: 19
10 Jan 2021 12:56:19,487 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:56:19,647 INFO : 7% Done
10 Jan 2021 12:56:19,926 DEBUG: Total peptides inserted: 12
10 Jan 2021 12:56:19,931 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:56:20,091 INFO : 8% Done
10 Jan 2021 12:56:20,507 DEBUG: Total peptides inserted: 19
10 Jan 2021 12:56:20,512 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:56:20,897 DEBUG: Total peptides inserted: 22
10 Jan 2021 12:56:20,897 INFO : Inserting Library Peptides
10 Jan 2021 12:56:20,907 INFO : 9% Done
10 Jan 2021 12:56:21,393 INFO : 10% Done
10 Jan 2021 12:56:22,387 INFO : 11% Done
10 Jan 2021 12:56:22,921 INFO : 12% Done
10 Jan 2021 12:56:23,469 INFO : 13% Done
10 Jan 2021 12:56:24,032 INFO : 14% Done
10 Jan 2021 12:56:25,436 INFO : 15% Done
10 Jan 2021 12:56:26,010 INFO : 16% Done
10 Jan 2021 12:56:26,546 INFO : 17% Done
10 Jan 2021 12:56:27,022 INFO : 18% Done
10 Jan 2021 12:56:28,105 INFO : 19% Done
10 Jan 2021 12:56:28,678 INFO : 20% Done
10 Jan 2021 12:56:29,257 INFO : 21% Done
10 Jan 2021 12:56:30,086 INFO : 22% Done
10 Jan 2021 12:56:31,201 INFO : 23% Done
10 Jan 2021 12:56:31,715 INFO : 24% Done
10 Jan 2021 12:56:32,228 INFO : 25% Done
10 Jan 2021 12:56:32,803 INFO : 26% Done
10 Jan 2021 12:56:33,973 INFO : 27% Done
10 Jan 2021 12:56:34,198 DEBUG: Inserted 50 peptides
10 Jan 2021 12:56:34,491 INFO : 28% Done
10 Jan 2021 12:56:35,016 INFO : 29% Done
10 Jan 2021 12:56:35,491 INFO : 30% Done
10 Jan 2021 12:56:36,488 INFO : 31% Done
10 Jan 2021 12:56:36,998 INFO : 32% Done
10 Jan 2021 12:56:37,554 INFO : 33% Done
10 Jan 2021 12:56:38,018 INFO : 34% Done
10 Jan 2021 12:56:39,176 INFO : 35% Done
10 Jan 2021 12:56:39,679 INFO : 36% Done
10 Jan 2021 12:56:40,203 INFO : 37% Done
10 Jan 2021 12:56:40,713 INFO : 38% Done
10 Jan 2021 12:56:41,683 INFO : 39% Done
10 Jan 2021 12:56:42,182 INFO : 40% Done
10 Jan 2021 12:56:42,689 INFO : 41% Done
10 Jan 2021 12:56:43,328 INFO : 42% Done
10 Jan 2021 12:56:44,297 INFO : 43% Done
10 Jan 2021 12:56:44,805 INFO : 44% Done
10 Jan 2021 12:56:45,313 INFO : 45% Done
10 Jan 2021 12:56:45,789 INFO : 46% Done
10 Jan 2021 12:56:46,859 INFO : 47% Done
10 Jan 2021 12:56:47,124 DEBUG: Inserted 100 peptides
10 Jan 2021 12:56:47,417 INFO : 48% Done
10 Jan 2021 12:56:48,254 INFO : 49% Done
10 Jan 2021 12:56:48,762 INFO : 50% Done
10 Jan 2021 12:56:49,821 INFO : 51% Done
10 Jan 2021 12:56:50,384 INFO : 52% Done
10 Jan 2021 12:56:50,921 INFO : 53% Done
10 Jan 2021 12:56:51,451 INFO : 54% Done
10 Jan 2021 12:56:52,375 INFO : 55% Done
10 Jan 2021 12:56:53,089 INFO : 56% Done
10 Jan 2021 12:56:53,612 INFO : 57% Done
10 Jan 2021 12:56:54,076 INFO : 58% Done
10 Jan 2021 12:56:54,528 INFO : 59% Done
10 Jan 2021 12:56:55,305 INFO : 60% Done
10 Jan 2021 12:56:55,790 INFO : 61% Done
10 Jan 2021 12:56:56,521 INFO : 62% Done
10 Jan 2021 12:56:57,608 INFO : 63% Done
10 Jan 2021 12:56:58,103 INFO : 64% Done
10 Jan 2021 12:56:58,591 INFO : 65% Done
10 Jan 2021 12:56:59,350 INFO : 66% Done
10 Jan 2021 12:57:00,396 INFO : 67% Done
10 Jan 2021 12:57:00,841 INFO : 68% Done
10 Jan 2021 12:57:01,358 INFO : 69% Done
10 Jan 2021 12:57:01,358 DEBUG: Inserted 150 peptides
10 Jan 2021 12:57:01,619 INFO : 70% Done
10 Jan 2021 12:57:02,356 INFO : 71% Done
10 Jan 2021 12:57:02,795 INFO : 72% Done
10 Jan 2021 12:57:03,394 INFO : 73% Done
10 Jan 2021 12:57:03,902 INFO : 74% Done
10 Jan 2021 12:57:04,727 INFO : 75% Done
10 Jan 2021 12:57:05,416 INFO : 76% Done
10 Jan 2021 12:57:06,095 INFO : 77% Done
10 Jan 2021 12:57:06,274 INFO : 78% Done
10 Jan 2021 12:57:07,544 INFO : 79% Done
10 Jan 2021 12:57:08,152 INFO : 80% Done
10 Jan 2021 12:57:08,704 DEBUG: Total peptides inserted: 175
10 Jan 2021 12:57:08,706 INFO : Done parsing Skyline document.
10 Jan 2021 12:57:08,714 INFO : Calculating fold changes
10 Jan 2021 12:57:08,714 DEBUG: Calculating fold change for group comparison volcano, 1 of 1
10 Jan 2021 12:57:20,843 INFO : 98% Done
10 Jan 2021 12:57:20,843 INFO : Done calculating fold changes.
10 Jan 2021 12:57:20,845 INFO : Creating and populating temp tables for Proportion values
10 Jan 2021 12:57:21,197 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
10 Jan 2021 12:57:23,550 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
10 Jan 2021 12:57:23,867 INFO : Cleaning up temp tables
10 Jan 2021 12:57:24,153 INFO : Completed import of Skyline document from 20190427_Fermentation_Above_Chymotryptic_2020-12-11_16-43-04.sky.zip
10 Jan 2021 12:57:24,164 INFO : 100% Done
10 Jan 2021 12:57:24,174 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96223/20190427_Fermentation_Above_Chymotryptic_2020-12-11_16-43-04.sky.zip into the system
10 Jan 2021 12:57:24,186 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96222/20190427_Mashing_Above_Chymotryptic_2020-12-11_16-37-18/20190427_Mashing_Above_Chymotryptic.skyd into the system
10 Jan 2021 12:57:24,186 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96222/20190427_Mashing_Above_Chymotryptic_2020-12-11_16-37-18/20190427_Mashing_Above_Chymotryptic.skyd into the system
10 Jan 2021 12:57:24,186 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96222/20190427_Mashing_Above_Chymotryptic_2020-12-11_16-37-18.sky.zip into the system
10 Jan 2021 12:57:24,190 INFO : Starting import from 20190427_Mashing_Above_Chymotryptic_2020-12-11_16-37-18.sky.zip
10 Jan 2021 12:57:24,195 INFO : Starting to import Skyline document from 20190427_Mashing_Above_Chymotryptic_2020-12-11_16-37-18.sky.zip
10 Jan 2021 12:57:24,210 INFO : Expanding 20190427_Mashing_Above_Chymotryptic.blib
10 Jan 2021 12:57:25,040 INFO : Expanding 20190427_Mashing_Above_Chymotryptic.redundant.blib
10 Jan 2021 12:57:29,378 INFO : Expanding 20190427_Mashing_Above_Chymotryptic.skyd
10 Jan 2021 12:57:30,396 INFO : Expanding 20190427_Mashing_Above_Chymotryptic.sky.view
10 Jan 2021 12:57:30,397 INFO : Expanding 20190427_Mashing_Above_Chymotryptic.sky
10 Jan 2021 12:57:30,492 INFO : 2% Done
10 Jan 2021 12:57:31,471 DEBUG: Starting to load chromatogram headers
10 Jan 2021 12:57:31,482 DEBUG: Done loading chromatogram headers
10 Jan 2021 12:57:31,583 INFO : Inserting Gamma gliadin
10 Jan 2021 12:57:32,234 INFO : 3% Done
10 Jan 2021 12:57:32,584 DEBUG: Total peptides inserted: 14
10 Jan 2021 12:57:32,588 INFO : Inserting Gamma gliadin
10 Jan 2021 12:57:32,813 INFO : 4% Done
10 Jan 2021 12:57:33,377 INFO : 5% Done
10 Jan 2021 12:57:33,892 DEBUG: Total peptides inserted: 11
10 Jan 2021 12:57:33,899 INFO : Inserting Gamma gliadin
10 Jan 2021 12:57:33,953 INFO : 6% Done
10 Jan 2021 12:57:34,085 DEBUG: Total peptides inserted: 11
10 Jan 2021 12:57:34,091 INFO : Inserting Gamma gliadin
10 Jan 2021 12:57:34,893 INFO : 7% Done
10 Jan 2021 12:57:35,398 DEBUG: Total peptides inserted: 10
10 Jan 2021 12:57:35,403 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:57:35,478 INFO : 8% Done
10 Jan 2021 12:57:35,887 DEBUG: Total peptides inserted: 9
10 Jan 2021 12:57:35,894 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:57:36,318 INFO : 9% Done
10 Jan 2021 12:57:36,699 DEBUG: Total peptides inserted: 13
10 Jan 2021 12:57:36,705 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:57:37,087 DEBUG: Total peptides inserted: 9
10 Jan 2021 12:57:37,091 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:57:37,099 INFO : 10% Done
10 Jan 2021 12:57:37,606 DEBUG: Total peptides inserted: 14
10 Jan 2021 12:57:37,611 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:57:37,827 DEBUG: Total peptides inserted: 12
10 Jan 2021 12:57:37,827 INFO : Inserting Library Peptides
10 Jan 2021 12:57:38,103 INFO : 11% Done
10 Jan 2021 12:57:38,582 INFO : 12% Done
10 Jan 2021 12:57:38,856 INFO : 13% Done
10 Jan 2021 12:57:39,355 INFO : 14% Done
10 Jan 2021 12:57:39,902 INFO : 15% Done
10 Jan 2021 12:57:40,211 INFO : 16% Done
10 Jan 2021 12:57:40,492 INFO : 17% Done
10 Jan 2021 12:57:40,638 INFO : 18% Done
10 Jan 2021 12:57:41,343 INFO : 19% Done
10 Jan 2021 12:57:41,632 INFO : 20% Done
10 Jan 2021 12:57:41,780 INFO : 21% Done
10 Jan 2021 12:57:42,176 INFO : 22% Done
10 Jan 2021 12:57:42,746 INFO : 23% Done
10 Jan 2021 12:57:42,893 INFO : 24% Done
10 Jan 2021 12:57:43,287 INFO : 25% Done
10 Jan 2021 12:57:43,599 INFO : 26% Done
10 Jan 2021 12:57:44,159 INFO : 27% Done
10 Jan 2021 12:57:44,442 INFO : 28% Done
10 Jan 2021 12:57:44,854 INFO : 29% Done
10 Jan 2021 12:57:45,127 INFO : 30% Done
10 Jan 2021 12:57:45,686 INFO : 31% Done
10 Jan 2021 12:57:45,994 INFO : 32% Done
10 Jan 2021 12:57:45,995 DEBUG: Inserted 50 peptides
10 Jan 2021 12:57:46,219 INFO : 33% Done
10 Jan 2021 12:57:46,411 INFO : 34% Done
10 Jan 2021 12:57:46,736 INFO : 35% Done
10 Jan 2021 12:57:46,925 INFO : 36% Done
10 Jan 2021 12:57:47,240 INFO : 37% Done
10 Jan 2021 12:57:47,358 INFO : 38% Done
10 Jan 2021 12:57:47,746 INFO : 39% Done
10 Jan 2021 12:57:48,179 INFO : 40% Done
10 Jan 2021 12:57:48,658 INFO : 41% Done
10 Jan 2021 12:57:49,155 INFO : 42% Done
10 Jan 2021 12:57:50,407 INFO : 43% Done
10 Jan 2021 12:57:50,561 INFO : 44% Done
10 Jan 2021 12:57:50,827 INFO : 45% Done
10 Jan 2021 12:57:51,215 INFO : 46% Done
10 Jan 2021 12:57:51,794 INFO : 47% Done
10 Jan 2021 12:57:52,083 INFO : 48% Done
10 Jan 2021 12:57:52,374 INFO : 49% Done
10 Jan 2021 12:57:52,674 INFO : 50% Done
10 Jan 2021 12:57:53,115 INFO : 51% Done
10 Jan 2021 12:57:53,521 INFO : 52% Done
10 Jan 2021 12:57:53,811 INFO : 53% Done
10 Jan 2021 12:57:54,258 INFO : 54% Done
10 Jan 2021 12:57:54,854 DEBUG: Inserted 100 peptides
10 Jan 2021 12:57:55,028 INFO : 55% Done
10 Jan 2021 12:57:55,317 INFO : 56% Done
10 Jan 2021 12:57:55,637 INFO : 57% Done
10 Jan 2021 12:57:56,134 INFO : 58% Done
10 Jan 2021 12:57:57,121 INFO : 59% Done
10 Jan 2021 12:57:57,580 INFO : 60% Done
10 Jan 2021 12:57:57,829 INFO : 61% Done
10 Jan 2021 12:57:58,540 INFO : 62% Done
10 Jan 2021 12:57:59,558 INFO : 63% Done
10 Jan 2021 12:57:59,835 INFO : 64% Done
10 Jan 2021 12:58:00,527 INFO : 65% Done
10 Jan 2021 12:58:01,009 INFO : 66% Done
10 Jan 2021 12:58:01,953 INFO : 67% Done
10 Jan 2021 12:58:02,654 INFO : 68% Done
10 Jan 2021 12:58:03,128 INFO : 69% Done
10 Jan 2021 12:58:03,600 INFO : 70% Done
10 Jan 2021 12:58:04,550 INFO : 71% Done
10 Jan 2021 12:58:04,987 INFO : 72% Done
10 Jan 2021 12:58:05,424 INFO : 73% Done
10 Jan 2021 12:58:05,675 INFO : 74% Done
10 Jan 2021 12:58:06,843 INFO : 75% Done
10 Jan 2021 12:58:07,327 INFO : 76% Done
10 Jan 2021 12:58:07,618 INFO : 77% Done
10 Jan 2021 12:58:07,619 DEBUG: Inserted 150 peptides
10 Jan 2021 12:58:07,879 INFO : 78% Done
10 Jan 2021 12:58:08,409 INFO : 79% Done
10 Jan 2021 12:58:08,716 INFO : 80% Done
10 Jan 2021 12:58:08,996 DEBUG: Total peptides inserted: 157
10 Jan 2021 12:58:08,997 INFO : Done parsing Skyline document.
10 Jan 2021 12:58:09,003 INFO : Calculating fold changes
10 Jan 2021 12:58:09,003 DEBUG: Calculating fold change for group comparison volcano, 1 of 1
10 Jan 2021 12:58:18,126 INFO : 98% Done
10 Jan 2021 12:58:18,126 INFO : Done calculating fold changes.
10 Jan 2021 12:58:18,129 INFO : Creating and populating temp tables for Proportion values
10 Jan 2021 12:58:18,474 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
10 Jan 2021 12:58:20,009 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
10 Jan 2021 12:58:20,283 INFO : Cleaning up temp tables
10 Jan 2021 12:58:20,575 INFO : Completed import of Skyline document from 20190427_Mashing_Above_Chymotryptic_2020-12-11_16-37-18.sky.zip
10 Jan 2021 12:58:20,588 INFO : 100% Done
10 Jan 2021 12:58:20,593 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96222/20190427_Mashing_Above_Chymotryptic_2020-12-11_16-37-18.sky.zip into the system
10 Jan 2021 12:58:20,635 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96221/20190427_Wheat_Malting_Above_Chymotryptic_2020-12-11_16-34-44/20190427_Wheat_Malting_Above_Chymotryptic.skyd into the system
10 Jan 2021 12:58:20,636 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96221/20190427_Wheat_Malting_Above_Chymotryptic_2020-12-11_16-34-44/20190427_Wheat_Malting_Above_Chymotryptic.skyd into the system
10 Jan 2021 12:58:20,636 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96221/20190427_Wheat_Malting_Above_Chymotryptic_2020-12-11_16-34-44.sky.zip into the system
10 Jan 2021 12:58:20,637 INFO : Starting import from 20190427_Wheat_Malting_Above_Chymotryptic_2020-12-11_16-34-44.sky.zip
10 Jan 2021 12:58:20,640 INFO : Starting to import Skyline document from 20190427_Wheat_Malting_Above_Chymotryptic_2020-12-11_16-34-44.sky.zip
10 Jan 2021 12:58:20,665 INFO : Expanding 20190427_Wheat_Malting_Above_Chymotryptic.blib
10 Jan 2021 12:58:21,804 INFO : Expanding 20190427_Wheat_Malting_Above_Chymotryptic.redundant.blib
10 Jan 2021 12:58:25,729 INFO : Expanding 20190427_Wheat_Malting_Above_Chymotryptic.skyd
10 Jan 2021 12:58:26,251 INFO : Expanding 20190427_Wheat_Malting_Above_Chymotryptic.sky.view
10 Jan 2021 12:58:26,251 INFO : Expanding 20190427_Wheat_Malting_Above_Chymotryptic.sky
10 Jan 2021 12:58:26,304 INFO : 2% Done
10 Jan 2021 12:58:27,067 DEBUG: Starting to load chromatogram headers
10 Jan 2021 12:58:27,075 DEBUG: Done loading chromatogram headers
10 Jan 2021 12:58:27,184 INFO : Inserting Gamma gliadin
10 Jan 2021 12:58:27,549 INFO : 3% Done
10 Jan 2021 12:58:27,855 INFO : 4% Done
10 Jan 2021 12:58:28,335 INFO : 5% Done
10 Jan 2021 12:58:28,892 INFO : 6% Done
10 Jan 2021 12:58:29,828 INFO : 7% Done
10 Jan 2021 12:58:30,559 INFO : 8% Done
10 Jan 2021 12:58:30,884 INFO : 9% Done
10 Jan 2021 12:58:31,373 INFO : 10% Done
10 Jan 2021 12:58:31,679 DEBUG: Total peptides inserted: 28
10 Jan 2021 12:58:31,684 INFO : Inserting Gamma gliadin
10 Jan 2021 12:58:32,552 INFO : 11% Done
10 Jan 2021 12:58:33,172 INFO : 12% Done
10 Jan 2021 12:58:33,479 INFO : 13% Done
10 Jan 2021 12:58:33,743 DEBUG: Total peptides inserted: 25
10 Jan 2021 12:58:33,749 INFO : Inserting Gamma gliadin
10 Jan 2021 12:58:34,279 INFO : 14% Done
10 Jan 2021 12:58:34,728 DEBUG: Total peptides inserted: 16
10 Jan 2021 12:58:34,734 INFO : Inserting Gamma gliadin
10 Jan 2021 12:58:35,293 INFO : 15% Done
10 Jan 2021 12:58:35,569 INFO : 16% Done
10 Jan 2021 12:58:36,208 INFO : 17% Done
10 Jan 2021 12:58:36,480 DEBUG: Total peptides inserted: 22
10 Jan 2021 12:58:36,485 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:58:36,859 INFO : 18% Done
10 Jan 2021 12:58:37,187 DEBUG: Total peptides inserted: 14
10 Jan 2021 12:58:37,193 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:58:37,759 INFO : 19% Done
10 Jan 2021 12:58:38,321 INFO : 20% Done
10 Jan 2021 12:58:38,884 DEBUG: Total peptides inserted: 20
10 Jan 2021 12:58:38,889 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:58:38,924 INFO : 21% Done
10 Jan 2021 12:58:39,304 INFO : 22% Done
10 Jan 2021 12:58:39,573 DEBUG: Total peptides inserted: 13
10 Jan 2021 12:58:39,578 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:58:40,361 INFO : 23% Done
10 Jan 2021 12:58:40,936 INFO : 24% Done
10 Jan 2021 12:58:41,254 DEBUG: Total peptides inserted: 21
10 Jan 2021 12:58:41,258 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:58:41,447 INFO : 25% Done
10 Jan 2021 12:58:41,927 DEBUG: Total peptides inserted: 12
10 Jan 2021 12:58:41,928 INFO : Inserting Library Peptides
10 Jan 2021 12:58:41,939 INFO : 26% Done
10 Jan 2021 12:58:42,636 INFO : 27% Done
10 Jan 2021 12:58:42,753 INFO : 28% Done
10 Jan 2021 12:58:42,947 INFO : 29% Done
10 Jan 2021 12:58:43,243 INFO : 30% Done
10 Jan 2021 12:58:43,626 INFO : 31% Done
10 Jan 2021 12:58:43,833 INFO : 32% Done
10 Jan 2021 12:58:44,029 INFO : 33% Done
10 Jan 2021 12:58:44,238 INFO : 34% Done
10 Jan 2021 12:58:45,279 INFO : 35% Done
10 Jan 2021 12:58:45,858 INFO : 36% Done
10 Jan 2021 12:58:46,196 INFO : 37% Done
10 Jan 2021 12:58:46,737 INFO : 38% Done
10 Jan 2021 12:58:47,970 INFO : 39% Done
10 Jan 2021 12:58:48,367 INFO : 40% Done
10 Jan 2021 12:58:48,712 INFO : 41% Done
10 Jan 2021 12:58:49,174 INFO : 42% Done
10 Jan 2021 12:58:50,146 INFO : 43% Done
10 Jan 2021 12:58:50,708 INFO : 44% Done
10 Jan 2021 12:58:51,280 INFO : 45% Done
10 Jan 2021 12:58:51,695 INFO : 46% Done
10 Jan 2021 12:58:52,572 INFO : 47% Done
10 Jan 2021 12:58:52,793 INFO : 48% Done
10 Jan 2021 12:58:53,201 INFO : 49% Done
10 Jan 2021 12:58:53,830 INFO : 50% Done
10 Jan 2021 12:58:54,144 DEBUG: Inserted 50 peptides
10 Jan 2021 12:58:54,506 INFO : 51% Done
10 Jan 2021 12:58:54,875 INFO : 52% Done
10 Jan 2021 12:58:55,629 INFO : 53% Done
10 Jan 2021 12:58:56,570 INFO : 54% Done
10 Jan 2021 12:58:57,810 INFO : 55% Done
10 Jan 2021 12:58:58,374 INFO : 56% Done
10 Jan 2021 12:58:59,022 INFO : 57% Done
10 Jan 2021 12:58:59,486 INFO : 58% Done
10 Jan 2021 12:59:00,099 INFO : 59% Done
10 Jan 2021 12:59:00,342 INFO : 60% Done
10 Jan 2021 12:59:00,571 INFO : 61% Done
10 Jan 2021 12:59:00,805 INFO : 62% Done
10 Jan 2021 12:59:01,149 INFO : 63% Done
10 Jan 2021 12:59:01,474 INFO : 64% Done
10 Jan 2021 12:59:01,597 INFO : 65% Done
10 Jan 2021 12:59:01,952 INFO : 66% Done
10 Jan 2021 12:59:03,000 INFO : 67% Done
10 Jan 2021 12:59:03,369 INFO : 68% Done
10 Jan 2021 12:59:03,772 INFO : 69% Done
10 Jan 2021 12:59:04,160 INFO : 70% Done
10 Jan 2021 12:59:04,939 INFO : 71% Done
10 Jan 2021 12:59:05,337 INFO : 72% Done
10 Jan 2021 12:59:05,722 INFO : 73% Done
10 Jan 2021 12:59:05,722 DEBUG: Inserted 100 peptides
10 Jan 2021 12:59:06,184 INFO : 74% Done
10 Jan 2021 12:59:07,096 INFO : 75% Done
10 Jan 2021 12:59:07,308 INFO : 76% Done
10 Jan 2021 12:59:07,857 INFO : 77% Done
10 Jan 2021 12:59:08,291 INFO : 78% Done
10 Jan 2021 12:59:09,120 INFO : 79% Done
10 Jan 2021 12:59:09,548 INFO : 80% Done
10 Jan 2021 12:59:09,976 DEBUG: Total peptides inserted: 116
10 Jan 2021 12:59:09,978 INFO : Done parsing Skyline document.
10 Jan 2021 12:59:09,983 INFO : Calculating fold changes
10 Jan 2021 12:59:09,983 DEBUG: Calculating fold change for group comparison volcano, 1 of 1
10 Jan 2021 12:59:20,193 INFO : 98% Done
10 Jan 2021 12:59:20,193 INFO : Done calculating fold changes.
10 Jan 2021 12:59:20,195 INFO : Creating and populating temp tables for Proportion values
10 Jan 2021 12:59:20,405 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
10 Jan 2021 12:59:21,718 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
10 Jan 2021 12:59:22,006 INFO : Cleaning up temp tables
10 Jan 2021 12:59:22,283 INFO : Completed import of Skyline document from 20190427_Wheat_Malting_Above_Chymotryptic_2020-12-11_16-34-44.sky.zip
10 Jan 2021 12:59:22,291 INFO : 100% Done
10 Jan 2021 12:59:22,296 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96221/20190427_Wheat_Malting_Above_Chymotryptic_2020-12-11_16-34-44.sky.zip into the system
10 Jan 2021 12:59:22,351 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96220/20190426_Barley_Malting_Above_Unspecific_2020-12-11_16-18-56/20190426_Barley_Malting_Above_Unspecific.skyd into the system
10 Jan 2021 12:59:22,351 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96220/20190426_Barley_Malting_Above_Unspecific_2020-12-11_16-18-56/20190426_Barley_Malting_Above_Unspecific.skyd into the system
10 Jan 2021 12:59:22,351 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96220/20190426_Barley_Malting_Above_Unspecific_2020-12-11_16-18-56.sky.zip into the system
10 Jan 2021 12:59:22,353 INFO : Starting import from 20190426_Barley_Malting_Above_Unspecific_2020-12-11_16-18-56.sky.zip
10 Jan 2021 12:59:22,357 INFO : Starting to import Skyline document from 20190426_Barley_Malting_Above_Unspecific_2020-12-11_16-18-56.sky.zip
10 Jan 2021 12:59:22,373 INFO : Expanding 20190426_Barley_Malting_Above_Unspecific.blib
10 Jan 2021 12:59:23,300 INFO : Expanding 20190426_Barley_Malting_Above_Unspecific.redundant.blib
10 Jan 2021 12:59:26,115 INFO : Expanding 20190426_Barley_Malting_Above_Unspecific.skyd
10 Jan 2021 12:59:29,114 INFO : Expanding 20190426_Barley_Malting_Above_Unspecific.sky.view
10 Jan 2021 12:59:29,115 INFO : Expanding 20190426_Barley_Malting_Above_Unspecific.sky
10 Jan 2021 12:59:29,279 INFO : 1% Done
10 Jan 2021 12:59:30,756 DEBUG: Starting to load chromatogram headers
10 Jan 2021 12:59:30,773 DEBUG: Done loading chromatogram headers
10 Jan 2021 12:59:31,002 INFO : Inserting Gamma gliadin
10 Jan 2021 12:59:31,195 DEBUG: Total peptides inserted: 5
10 Jan 2021 12:59:31,198 INFO : Inserting Gamma gliadin
10 Jan 2021 12:59:31,214 INFO : 2% Done
10 Jan 2021 12:59:31,517 DEBUG: Total peptides inserted: 3
10 Jan 2021 12:59:31,521 INFO : Inserting Gamma gliadin
10 Jan 2021 12:59:31,544 DEBUG: Total peptides inserted: 2
10 Jan 2021 12:59:31,547 INFO : Inserting Gamma gliadin
10 Jan 2021 12:59:31,832 DEBUG: Total peptides inserted: 3
10 Jan 2021 12:59:31,835 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:59:31,870 DEBUG: Total peptides inserted: 3
10 Jan 2021 12:59:31,873 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:59:31,893 DEBUG: Total peptides inserted: 1
10 Jan 2021 12:59:31,896 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:59:31,931 DEBUG: Total peptides inserted: 3
10 Jan 2021 12:59:31,934 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:59:31,937 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 12:59:31,950 DEBUG: Total peptides inserted: 1
10 Jan 2021 12:59:31,950 INFO : Inserting Library Peptides
10 Jan 2021 12:59:32,119 INFO : 3% Done
10 Jan 2021 12:59:32,531 INFO : 4% Done
10 Jan 2021 12:59:32,935 INFO : 5% Done
10 Jan 2021 12:59:33,247 INFO : 6% Done
10 Jan 2021 12:59:33,735 INFO : 7% Done
10 Jan 2021 12:59:34,051 INFO : 8% Done
10 Jan 2021 12:59:34,418 INFO : 9% Done
10 Jan 2021 12:59:34,652 INFO : 10% Done
10 Jan 2021 12:59:35,207 INFO : 11% Done
10 Jan 2021 12:59:35,556 INFO : 12% Done
10 Jan 2021 12:59:35,994 INFO : 13% Done
10 Jan 2021 12:59:36,360 INFO : 14% Done
10 Jan 2021 12:59:37,215 INFO : 15% Done
10 Jan 2021 12:59:37,798 INFO : 16% Done
10 Jan 2021 12:59:38,254 INFO : 17% Done
10 Jan 2021 12:59:38,936 INFO : 18% Done
10 Jan 2021 12:59:40,332 INFO : 19% Done
10 Jan 2021 12:59:40,767 INFO : 20% Done
10 Jan 2021 12:59:41,456 INFO : 21% Done
10 Jan 2021 12:59:42,344 INFO : 22% Done
10 Jan 2021 12:59:43,048 DEBUG: Inserted 50 peptides
10 Jan 2021 12:59:43,888 INFO : 23% Done
10 Jan 2021 12:59:44,570 INFO : 24% Done
10 Jan 2021 12:59:45,237 INFO : 25% Done
10 Jan 2021 12:59:45,673 INFO : 26% Done
10 Jan 2021 12:59:47,031 INFO : 27% Done
10 Jan 2021 12:59:47,700 INFO : 28% Done
10 Jan 2021 12:59:48,136 INFO : 29% Done
10 Jan 2021 12:59:49,023 INFO : 30% Done
10 Jan 2021 12:59:50,240 INFO : 31% Done
10 Jan 2021 12:59:51,147 INFO : 32% Done
10 Jan 2021 12:59:51,866 INFO : 33% Done
10 Jan 2021 12:59:52,616 INFO : 34% Done
10 Jan 2021 12:59:53,869 INFO : 35% Done
10 Jan 2021 12:59:54,360 INFO : 36% Done
10 Jan 2021 12:59:55,272 INFO : 37% Done
10 Jan 2021 12:59:55,978 INFO : 38% Done
10 Jan 2021 12:59:57,331 INFO : 39% Done
10 Jan 2021 12:59:58,062 INFO : 40% Done
10 Jan 2021 12:59:58,561 INFO : 41% Done
10 Jan 2021 12:59:58,561 DEBUG: Inserted 100 peptides
10 Jan 2021 12:59:59,010 INFO : 42% Done
10 Jan 2021 13:00:00,542 INFO : 43% Done
10 Jan 2021 13:00:01,024 INFO : 44% Done
10 Jan 2021 13:00:01,911 INFO : 45% Done
10 Jan 2021 13:00:02,600 INFO : 46% Done
10 Jan 2021 13:00:03,888 INFO : 47% Done
10 Jan 2021 13:00:04,333 INFO : 48% Done
10 Jan 2021 13:00:05,220 INFO : 49% Done
10 Jan 2021 13:00:05,683 INFO : 50% Done
10 Jan 2021 13:00:07,040 INFO : 51% Done
10 Jan 2021 13:00:07,476 INFO : 52% Done
10 Jan 2021 13:00:08,362 INFO : 53% Done
10 Jan 2021 13:00:09,075 INFO : 54% Done
10 Jan 2021 13:00:10,504 INFO : 55% Done
10 Jan 2021 13:00:11,138 INFO : 56% Done
10 Jan 2021 13:00:11,870 INFO : 57% Done
10 Jan 2021 13:00:12,620 INFO : 58% Done
10 Jan 2021 13:00:14,156 INFO : 59% Done
10 Jan 2021 13:00:14,715 INFO : 60% Done
10 Jan 2021 13:00:15,202 DEBUG: Inserted 150 peptides
10 Jan 2021 13:00:15,484 INFO : 61% Done
10 Jan 2021 13:00:16,470 INFO : 62% Done
10 Jan 2021 13:00:17,503 INFO : 63% Done
10 Jan 2021 13:00:18,487 INFO : 64% Done
10 Jan 2021 13:00:19,037 INFO : 65% Done
10 Jan 2021 13:00:20,052 INFO : 66% Done
10 Jan 2021 13:00:21,317 INFO : 67% Done
10 Jan 2021 13:00:22,309 INFO : 68% Done
10 Jan 2021 13:00:23,081 INFO : 69% Done
10 Jan 2021 13:00:23,577 INFO : 70% Done
10 Jan 2021 13:00:25,382 INFO : 71% Done
10 Jan 2021 13:00:26,197 INFO : 72% Done
10 Jan 2021 13:00:26,700 INFO : 73% Done
10 Jan 2021 13:00:27,195 INFO : 74% Done
10 Jan 2021 13:00:28,777 INFO : 75% Done
10 Jan 2021 13:00:29,763 INFO : 76% Done
10 Jan 2021 13:00:30,524 INFO : 77% Done
10 Jan 2021 13:00:31,313 INFO : 78% Done
10 Jan 2021 13:00:32,827 INFO : 79% Done
10 Jan 2021 13:00:33,604 INFO : 80% Done
10 Jan 2021 13:00:34,134 DEBUG: Total peptides inserted: 197
10 Jan 2021 13:00:34,136 INFO : Done parsing Skyline document.
10 Jan 2021 13:00:34,143 INFO : Calculating fold changes
10 Jan 2021 13:00:34,144 DEBUG: Calculating fold change for group comparison volcano, 1 of 1
10 Jan 2021 13:00:47,340 INFO : 98% Done
10 Jan 2021 13:00:47,340 INFO : Done calculating fold changes.
10 Jan 2021 13:00:47,343 INFO : Creating and populating temp tables for Proportion values
10 Jan 2021 13:00:47,751 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
10 Jan 2021 13:00:50,368 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
10 Jan 2021 13:00:50,719 INFO : Cleaning up temp tables
10 Jan 2021 13:00:50,995 INFO : Completed import of Skyline document from 20190426_Barley_Malting_Above_Unspecific_2020-12-11_16-18-56.sky.zip
10 Jan 2021 13:00:51,002 INFO : 100% Done
10 Jan 2021 13:00:51,008 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96220/20190426_Barley_Malting_Above_Unspecific_2020-12-11_16-18-56.sky.zip into the system
10 Jan 2021 13:00:51,021 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96219/20190426_Barley_Malting_Below_2020-12-11_16-19-25/20190426_Barley_Malting_Below.skyd into the system
10 Jan 2021 13:00:51,022 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96219/20190426_Barley_Malting_Below_2020-12-11_16-19-25/20190426_Barley_Malting_Below.skyd into the system
10 Jan 2021 13:00:51,022 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96219/20190426_Barley_Malting_Below_2020-12-11_16-19-25.sky.zip into the system
10 Jan 2021 13:00:51,024 INFO : Starting import from 20190426_Barley_Malting_Below_2020-12-11_16-19-25.sky.zip
10 Jan 2021 13:00:51,026 INFO : Starting to import Skyline document from 20190426_Barley_Malting_Below_2020-12-11_16-19-25.sky.zip
10 Jan 2021 13:00:51,045 INFO : Expanding 20190426_Barley_Malting_Below.blib
10 Jan 2021 13:00:51,185 INFO : Expanding 20190426_Barley_Malting_Below.redundant.blib
10 Jan 2021 13:00:51,450 INFO : Expanding 20190426_Barley_Malting_Below.skyd
10 Jan 2021 13:00:52,465 INFO : Expanding 20190426_Barley_Malting_Below.sky.view
10 Jan 2021 13:00:52,465 INFO : Expanding 20190426_Barley_Malting_Below.sky
10 Jan 2021 13:00:52,521 INFO : 1% Done
10 Jan 2021 13:00:53,141 DEBUG: Starting to load chromatogram headers
10 Jan 2021 13:00:53,149 DEBUG: Done loading chromatogram headers
10 Jan 2021 13:00:53,317 INFO : Inserting Gamma gliadin
10 Jan 2021 13:00:53,319 INFO : Inserting Gamma gliadin
10 Jan 2021 13:00:53,322 INFO : Inserting Gamma gliadin
10 Jan 2021 13:00:53,325 INFO : Inserting Gamma gliadin
10 Jan 2021 13:00:53,327 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 13:00:53,330 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 13:00:53,332 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 13:00:53,335 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 13:00:53,337 INFO : Inserting Alpha/beta gliadin
10 Jan 2021 13:00:53,338 INFO : Inserting Library Peptides
10 Jan 2021 13:00:53,347 INFO : 2% Done
10 Jan 2021 13:00:53,809 INFO : 4% Done
10 Jan 2021 13:00:54,178 INFO : 5% Done
10 Jan 2021 13:00:54,327 INFO : 6% Done
10 Jan 2021 13:00:54,683 INFO : 7% Done
10 Jan 2021 13:00:54,937 INFO : 8% Done
10 Jan 2021 13:00:55,062 INFO : 9% Done
10 Jan 2021 13:00:55,234 INFO : 10% Done
10 Jan 2021 13:00:55,450 INFO : 11% Done
10 Jan 2021 13:00:55,779 INFO : 12% Done
10 Jan 2021 13:00:55,901 INFO : 13% Done
10 Jan 2021 13:00:56,140 INFO : 14% Done
10 Jan 2021 13:00:56,481 INFO : 16% Done
10 Jan 2021 13:00:56,804 INFO : 17% Done
10 Jan 2021 13:00:56,920 INFO : 18% Done
10 Jan 2021 13:00:57,277 INFO : 19% Done
10 Jan 2021 13:00:57,405 INFO : 20% Done
10 Jan 2021 13:00:57,646 INFO : 21% Done
10 Jan 2021 13:00:57,772 INFO : 22% Done
10 Jan 2021 13:00:58,006 INFO : 23% Done
10 Jan 2021 13:00:58,246 INFO : 24% Done
10 Jan 2021 13:00:58,472 INFO : 25% Done
10 Jan 2021 13:00:58,591 INFO : 26% Done
10 Jan 2021 13:00:58,949 INFO : 27% Done
10 Jan 2021 13:00:59,083 INFO : 28% Done
10 Jan 2021 13:00:59,344 INFO : 29% Done
10 Jan 2021 13:00:59,479 INFO : 30% Done
10 Jan 2021 13:00:59,850 INFO : 31% Done
10 Jan 2021 13:00:59,974 INFO : 32% Done
10 Jan 2021 13:01:00,187 INFO : 33% Done
10 Jan 2021 13:01:00,315 INFO : 34% Done
10 Jan 2021 13:01:00,534 DEBUG: Inserted 50 peptides
10 Jan 2021 13:01:00,769 INFO : 35% Done
10 Jan 2021 13:01:00,891 INFO : 37% Done
10 Jan 2021 13:01:01,224 INFO : 38% Done
10 Jan 2021 13:01:01,652 INFO : 40% Done
10 Jan 2021 13:01:02,110 INFO : 41% Done
10 Jan 2021 13:01:02,518 INFO : 42% Done
10 Jan 2021 13:01:02,976 INFO : 43% Done
10 Jan 2021 13:01:03,132 INFO : 44% Done
10 Jan 2021 13:01:03,414 INFO : 46% Done
10 Jan 2021 13:01:03,997 INFO : 47% Done
10 Jan 2021 13:01:04,156 INFO : 48% Done
10 Jan 2021 13:01:04,433 INFO : 49% Done
10 Jan 2021 13:01:04,728 INFO : 50% Done
10 Jan 2021 13:01:05,153 INFO : 52% Done
10 Jan 2021 13:01:05,423 INFO : 53% Done
10 Jan 2021 13:01:05,723 INFO : 54% Done
10 Jan 2021 13:01:06,135 INFO : 56% Done
10 Jan 2021 13:01:06,409 INFO : 57% Done
10 Jan 2021 13:01:06,677 INFO : 58% Done
10 Jan 2021 13:01:07,001 INFO : 59% Done
10 Jan 2021 13:01:07,325 INFO : 60% Done
10 Jan 2021 13:01:07,598 INFO : 61% Done
10 Jan 2021 13:01:07,862 INFO : 62% Done
10 Jan 2021 13:01:08,277 INFO : 63% Done
10 Jan 2021 13:01:08,425 INFO : 64% Done
10 Jan 2021 13:01:08,573 INFO : 65% Done
10 Jan 2021 13:01:08,870 INFO : 66% Done
10 Jan 2021 13:01:09,331 INFO : 67% Done
10 Jan 2021 13:01:09,485 INFO : 68% Done
10 Jan 2021 13:01:09,638 INFO : 69% Done
10 Jan 2021 13:01:09,920 INFO : 70% Done
10 Jan 2021 13:01:10,239 INFO : 71% Done
10 Jan 2021 13:01:10,507 INFO : 72% Done
10 Jan 2021 13:01:10,508 DEBUG: Inserted 100 peptides
10 Jan 2021 13:01:10,814 INFO : 74% Done
10 Jan 2021 13:01:11,373 INFO : 75% Done
10 Jan 2021 13:01:11,691 INFO : 76% Done
10 Jan 2021 13:01:11,841 INFO : 77% Done
10 Jan 2021 13:01:12,008 INFO : 78% Done
10 Jan 2021 13:01:12,522 INFO : 79% Done
10 Jan 2021 13:01:12,826 INFO : 80% Done
10 Jan 2021 13:01:12,972 DEBUG: Total peptides inserted: 114
10 Jan 2021 13:01:12,973 INFO : Done parsing Skyline document.
10 Jan 2021 13:01:12,978 INFO : Calculating fold changes
10 Jan 2021 13:01:12,978 DEBUG: Calculating fold change for group comparison volcano, 1 of 1
10 Jan 2021 13:01:18,170 INFO : 98% Done
10 Jan 2021 13:01:18,171 INFO : Done calculating fold changes.
10 Jan 2021 13:01:18,173 INFO : Creating and populating temp tables for Proportion values
10 Jan 2021 13:01:18,391 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
10 Jan 2021 13:01:19,852 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
10 Jan 2021 13:01:20,060 INFO : Cleaning up temp tables
10 Jan 2021 13:01:20,315 INFO : Completed import of Skyline document from 20190426_Barley_Malting_Below_2020-12-11_16-19-25.sky.zip
10 Jan 2021 13:01:20,322 INFO : 100% Done
10 Jan 2021 13:01:20,327 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96219/20190426_Barley_Malting_Below_2020-12-11_16-19-25.sky.zip into the system
10 Jan 2021 13:01:20,337 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96217/20190426_Barley_Malting_Above_Chymotryptic_2020-12-11_16-00-31/20190426_Barley_Malting_Above_Chymotryptic.skyd into the system
10 Jan 2021 13:01:20,338 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96217/20190426_Barley_Malting_Above_Chymotryptic_2020-12-11_16-00-31/20190426_Barley_Malting_Above_Chymotryptic.skyd into the system
10 Jan 2021 13:01:20,338 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96217/20190426_Barley_Malting_Above_Chymotryptic_2020-12-11_16-00-31.sky.zip into the system
10 Jan 2021 13:01:20,339 INFO : Starting import from 20190426_Barley_Malting_Above_Chymotryptic_2020-12-11_16-00-31.sky.zip
10 Jan 2021 13:01:20,342 INFO : Starting to import Skyline document from 20190426_Barley_Malting_Above_Chymotryptic_2020-12-11_16-00-31.sky.zip
10 Jan 2021 13:01:20,362 INFO : Expanding 20190426_Barley_Malting_Above_Chymotryptic.blib
10 Jan 2021 13:01:21,157 INFO : Expanding 20190426_Barley_Malting_Above_Chymotryptic.redundant.blib
10 Jan 2021 13:01:26,474 INFO : Expanding 20190426_Barley_Malting_Above_Chymotryptic.skyd
10 Jan 2021 13:01:26,924 INFO : Expanding 20190426_Barley_Malting_Above_Chymotryptic.sky.view
10 Jan 2021 13:01:26,924 INFO : Expanding 20190426_Barley_Malting_Above_Chymotryptic.sky
10 Jan 2021 13:01:26,987 INFO : 1% Done
10 Jan 2021 13:01:27,539 DEBUG: Starting to load chromatogram headers
10 Jan 2021 13:01:27,549 DEBUG: Done loading chromatogram headers
10 Jan 2021 13:01:27,663 INFO : Inserting K7XRJ1_Gamma gliadin
10 Jan 2021 13:01:27,686 INFO : 2% Done
10 Jan 2021 13:01:27,937 DEBUG: Total peptides inserted: 2
10 Jan 2021 13:01:27,938 INFO : Inserting P21292_Gamma gliadin
10 Jan 2021 13:01:28,435 INFO : 3% Done
10 Jan 2021 13:01:28,658 INFO : 4% Done
10 Jan 2021 13:01:28,873 DEBUG: Total peptides inserted: 3
10 Jan 2021 13:01:28,873 INFO : Inserting A1EHE7_Gamma gliadin
10 Jan 2021 13:01:29,111 INFO : 5% Done
10 Jan 2021 13:01:29,333 DEBUG: Total peptides inserted: 2
10 Jan 2021 13:01:29,333 INFO : Inserting M9TE79_Gamma gliadin
10 Jan 2021 13:01:29,353 INFO : 6% Done
10 Jan 2021 13:01:30,219 DEBUG: Total peptides inserted: 3
10 Jan 2021 13:01:30,219 INFO : Inserting Library Peptides
10 Jan 2021 13:01:30,229 INFO : 7% Done
10 Jan 2021 13:01:30,623 INFO : 9% Done
10 Jan 2021 13:01:31,167 INFO : 10% Done
10 Jan 2021 13:01:31,779 INFO : 11% Done
10 Jan 2021 13:01:31,983 INFO : 12% Done
10 Jan 2021 13:01:32,395 INFO : 13% Done
10 Jan 2021 13:01:32,616 INFO : 14% Done
10 Jan 2021 13:01:33,394 INFO : 15% Done
10 Jan 2021 13:01:33,798 INFO : 17% Done
10 Jan 2021 13:01:34,367 INFO : 18% Done
10 Jan 2021 13:01:34,942 INFO : 19% Done
10 Jan 2021 13:01:35,287 INFO : 20% Done
10 Jan 2021 13:01:35,656 INFO : 22% Done
10 Jan 2021 13:01:36,384 INFO : 23% Done
10 Jan 2021 13:01:36,579 INFO : 24% Done
10 Jan 2021 13:01:36,918 INFO : 25% Done
10 Jan 2021 13:01:37,301 INFO : 26% Done
10 Jan 2021 13:01:37,827 INFO : 27% Done
10 Jan 2021 13:01:38,174 INFO : 28% Done
10 Jan 2021 13:01:38,368 INFO : 29% Done
10 Jan 2021 13:01:38,930 INFO : 30% Done
10 Jan 2021 13:01:39,472 INFO : 31% Done
10 Jan 2021 13:01:39,690 INFO : 32% Done
10 Jan 2021 13:01:40,115 INFO : 33% Done
10 Jan 2021 13:01:40,497 INFO : 34% Done
10 Jan 2021 13:01:40,928 INFO : 35% Done
10 Jan 2021 13:01:41,509 INFO : 37% Done
10 Jan 2021 13:01:42,121 INFO : 38% Done
10 Jan 2021 13:01:42,648 INFO : 39% Done
10 Jan 2021 13:01:42,984 INFO : 40% Done
10 Jan 2021 13:01:43,208 INFO : 41% Done
10 Jan 2021 13:01:43,208 DEBUG: Inserted 50 peptides
10 Jan 2021 13:01:43,562 INFO : 42% Done
10 Jan 2021 13:01:44,234 INFO : 43% Done
10 Jan 2021 13:01:44,407 INFO : 44% Done
10 Jan 2021 13:01:44,727 INFO : 45% Done
10 Jan 2021 13:01:44,895 INFO : 46% Done
10 Jan 2021 13:01:45,492 INFO : 48% Done
10 Jan 2021 13:01:45,906 INFO : 49% Done
10 Jan 2021 13:01:46,197 INFO : 50% Done
10 Jan 2021 13:01:46,745 INFO : 51% Done
10 Jan 2021 13:01:47,160 INFO : 52% Done
10 Jan 2021 13:01:47,380 INFO : 53% Done
10 Jan 2021 13:01:47,707 INFO : 54% Done
10 Jan 2021 13:01:48,017 INFO : 55% Done
10 Jan 2021 13:01:48,347 INFO : 56% Done
10 Jan 2021 13:01:48,783 INFO : 57% Done
10 Jan 2021 13:01:48,969 INFO : 58% Done
10 Jan 2021 13:01:49,536 INFO : 59% Done
10 Jan 2021 13:01:49,912 INFO : 60% Done
10 Jan 2021 13:01:50,337 INFO : 62% Done
10 Jan 2021 13:01:51,160 INFO : 64% Done
10 Jan 2021 13:01:51,453 INFO : 65% Done
10 Jan 2021 13:01:51,881 INFO : 66% Done
10 Jan 2021 13:01:52,339 INFO : 67% Done
10 Jan 2021 13:01:52,646 INFO : 68% Done
10 Jan 2021 13:01:52,794 INFO : 69% Done
10 Jan 2021 13:01:52,948 INFO : 70% Done
10 Jan 2021 13:01:53,496 INFO : 71% Done
10 Jan 2021 13:01:53,872 INFO : 72% Done
10 Jan 2021 13:01:54,224 INFO : 73% Done
10 Jan 2021 13:01:54,421 INFO : 74% Done
10 Jan 2021 13:01:55,075 INFO : 75% Done
10 Jan 2021 13:01:55,266 INFO : 76% Done
10 Jan 2021 13:01:55,266 DEBUG: Inserted 100 peptides
10 Jan 2021 13:01:55,615 INFO : 77% Done
10 Jan 2021 13:01:55,992 INFO : 78% Done
10 Jan 2021 13:01:56,569 INFO : 79% Done
10 Jan 2021 13:01:56,779 INFO : 80% Done
10 Jan 2021 13:01:57,142 DEBUG: Total peptides inserted: 105
10 Jan 2021 13:01:57,144 INFO : Done parsing Skyline document.
10 Jan 2021 13:01:57,148 INFO : Calculating fold changes
10 Jan 2021 13:01:57,148 DEBUG: Calculating fold change for group comparison volcano, 1 of 1
10 Jan 2021 13:02:02,468 INFO : 98% Done
10 Jan 2021 13:02:02,468 INFO : Done calculating fold changes.
10 Jan 2021 13:02:02,470 INFO : Creating and populating temp tables for Proportion values
10 Jan 2021 13:02:02,703 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
10 Jan 2021 13:02:04,333 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
10 Jan 2021 13:02:04,770 INFO : Cleaning up temp tables
10 Jan 2021 13:02:05,124 INFO : Completed import of Skyline document from 20190426_Barley_Malting_Above_Chymotryptic_2020-12-11_16-00-31.sky.zip
10 Jan 2021 13:02:05,131 INFO : 100% Done
10 Jan 2021 13:02:05,140 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96217/20190426_Barley_Malting_Above_Chymotryptic_2020-12-11_16-00-31.sky.zip into the system
10 Jan 2021 13:02:05,262 INFO : Done importing xar
10 Jan 2021 13:02:05,267 INFO : Loading pages and webpart properties
10 Jan 2021 13:02:05,727 INFO : Done importing pages and webpart properties
10 Jan 2021 13:02:05,727 INFO :
10 Jan 2021 13:02:05,728 INFO : Experiment import completed successfully.
10 Jan 2021 13:02:05,728 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
10 Jan 2021 13:05:42,003 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
10 Jan 2021 13:05:42,021 INFO :
10 Jan 2021 13:05:42,021 INFO : Finishing up experiment copy.
10 Jan 2021 13:05:42,023 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
10 Jan 2021 13:05:42,026 INFO : Assigning a ProteomeXchange ID.
10 Jan 2021 13:05:43,547 INFO : Updating access URL to point to the new copy of the data.
10 Jan 2021 13:05:43,662 INFO : Setting the 'copied' timestamp and journalExperimentId on the JournalExperiment table.
10 Jan 2021 13:05:43,731 INFO : Removing copy permissions given to journal.
10 Jan 2021 13:05:43,822 INFO : Adding read permissions to all users that are folder admins in the source container.
10 Jan 2021 13:05:43,924 INFO : Setting the TargetedMS folder type to 'Experimental Data'
10 Jan 2021 13:05:43,988 INFO : Updating the 'Raw Data' tab configuration
10 Jan 2021 13:05:44,027 INFO : Updating dataFileUrls for run 20190426_Barley_Malting_Above_Chymotryptic_2020-12-11_16-00-31.sky.zip; targetedms run ID 99848
10 Jan 2021 13:05:44,027 INFO : Updating dataFileUrl...
10 Jan 2021 13:05:44,027 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96217/20190426_Barley_Malting_Above_Chymotryptic_2020-12-11_16-00-31.sky.zip
10 Jan 2021 13:05:44,028 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry/@files/20190426_Barley_Malting_Above_Chymotryptic_2020-12-11_16-00-31.sky.zip
10 Jan 2021 13:05:44,076 INFO : Updating dataFileUrl...
10 Jan 2021 13:05:44,076 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96217/20190426_Barley_Malting_Above_Chymotryptic_2020-12-11_16-00-31/20190426_Barley_Malting_Above_Chymotryptic.skyd
10 Jan 2021 13:05:44,076 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry/@files/20190426_Barley_Malting_Above_Chymotryptic_2020-12-11_16-00-31/20190426_Barley_Malting_Above_Chymotryptic.skyd
10 Jan 2021 13:05:44,100 INFO : Updating dataFileUrls for run 20190426_Barley_Malting_Below_2020-12-11_16-19-25.sky.zip; targetedms run ID 99847
10 Jan 2021 13:05:44,100 INFO : Updating dataFileUrl...
10 Jan 2021 13:05:44,100 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96219/20190426_Barley_Malting_Below_2020-12-11_16-19-25.sky.zip
10 Jan 2021 13:05:44,101 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry/@files/20190426_Barley_Malting_Below_2020-12-11_16-19-25.sky.zip
10 Jan 2021 13:05:44,127 INFO : Updating dataFileUrl...
10 Jan 2021 13:05:44,127 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96219/20190426_Barley_Malting_Below_2020-12-11_16-19-25/20190426_Barley_Malting_Below.skyd
10 Jan 2021 13:05:44,127 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry/@files/20190426_Barley_Malting_Below_2020-12-11_16-19-25/20190426_Barley_Malting_Below.skyd
10 Jan 2021 13:05:44,137 INFO : Updating dataFileUrls for run 20190426_Barley_Malting_Above_Unspecific_2020-12-11_16-18-56.sky.zip; targetedms run ID 99846
10 Jan 2021 13:05:44,137 INFO : Updating dataFileUrl...
10 Jan 2021 13:05:44,137 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96220/20190426_Barley_Malting_Above_Unspecific_2020-12-11_16-18-56.sky.zip
10 Jan 2021 13:05:44,138 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry/@files/20190426_Barley_Malting_Above_Unspecific_2020-12-11_16-18-56.sky.zip
10 Jan 2021 13:05:44,171 INFO : Updating dataFileUrl...
10 Jan 2021 13:05:44,172 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96220/20190426_Barley_Malting_Above_Unspecific_2020-12-11_16-18-56/20190426_Barley_Malting_Above_Unspecific.skyd
10 Jan 2021 13:05:44,172 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry/@files/20190426_Barley_Malting_Above_Unspecific_2020-12-11_16-18-56/20190426_Barley_Malting_Above_Unspecific.skyd
10 Jan 2021 13:05:44,181 INFO : Updating dataFileUrls for run 20190427_Wheat_Malting_Above_Chymotryptic_2020-12-11_16-34-44.sky.zip; targetedms run ID 99845
10 Jan 2021 13:05:44,196 INFO : Updating dataFileUrl...
10 Jan 2021 13:05:44,196 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96221/20190427_Wheat_Malting_Above_Chymotryptic_2020-12-11_16-34-44/20190427_Wheat_Malting_Above_Chymotryptic.skyd
10 Jan 2021 13:05:44,196 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry/@files/20190427_Wheat_Malting_Above_Chymotryptic_2020-12-11_16-34-44/20190427_Wheat_Malting_Above_Chymotryptic.skyd
10 Jan 2021 13:05:44,201 INFO : Updating dataFileUrl...
10 Jan 2021 13:05:44,202 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96221/20190427_Wheat_Malting_Above_Chymotryptic_2020-12-11_16-34-44.sky.zip
10 Jan 2021 13:05:44,202 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry/@files/20190427_Wheat_Malting_Above_Chymotryptic_2020-12-11_16-34-44.sky.zip
10 Jan 2021 13:05:44,211 INFO : Updating dataFileUrls for run 20190427_Mashing_Above_Chymotryptic_2020-12-11_16-37-18.sky.zip; targetedms run ID 99844
10 Jan 2021 13:05:44,211 INFO : Updating dataFileUrl...
10 Jan 2021 13:05:44,211 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96222/20190427_Mashing_Above_Chymotryptic_2020-12-11_16-37-18.sky.zip
10 Jan 2021 13:05:44,212 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry/@files/20190427_Mashing_Above_Chymotryptic_2020-12-11_16-37-18.sky.zip
10 Jan 2021 13:05:44,283 INFO : Updating dataFileUrl...
10 Jan 2021 13:05:44,283 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96222/20190427_Mashing_Above_Chymotryptic_2020-12-11_16-37-18/20190427_Mashing_Above_Chymotryptic.skyd
10 Jan 2021 13:05:44,283 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry/@files/20190427_Mashing_Above_Chymotryptic_2020-12-11_16-37-18/20190427_Mashing_Above_Chymotryptic.skyd
10 Jan 2021 13:05:44,293 INFO : Updating dataFileUrls for run 20190427_Fermentation_Above_Chymotryptic_2020-12-11_16-43-04.sky.zip; targetedms run ID 99843
10 Jan 2021 13:05:44,317 INFO : Updating dataFileUrl...
10 Jan 2021 13:05:44,317 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96223/20190427_Fermentation_Above_Chymotryptic_2020-12-11_16-43-04/20190427_Fermentation_Above_Chymotryptic.skyd
10 Jan 2021 13:05:44,317 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry/@files/20190427_Fermentation_Above_Chymotryptic_2020-12-11_16-43-04/20190427_Fermentation_Above_Chymotryptic.skyd
10 Jan 2021 13:05:44,322 INFO : Updating dataFileUrl...
10 Jan 2021 13:05:44,322 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96223/20190427_Fermentation_Above_Chymotryptic_2020-12-11_16-43-04.sky.zip
10 Jan 2021 13:05:44,322 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry/@files/20190427_Fermentation_Above_Chymotryptic_2020-12-11_16-43-04.sky.zip
10 Jan 2021 13:05:44,331 INFO : Updating dataFileUrls for run 20190427_Wheat_Malting_Above_Unspecific_2020-12-11_16-35-24.sky.zip; targetedms run ID 99842
10 Jan 2021 13:05:44,352 INFO : Updating dataFileUrl...
10 Jan 2021 13:05:44,352 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96224/20190427_Wheat_Malting_Above_Unspecific_2020-12-11_16-35-24/20190427_Wheat_Malting_Above_Unspecific.skyd
10 Jan 2021 13:05:44,353 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry/@files/20190427_Wheat_Malting_Above_Unspecific_2020-12-11_16-35-24/20190427_Wheat_Malting_Above_Unspecific.skyd
10 Jan 2021 13:05:44,358 INFO : Updating dataFileUrl...
10 Jan 2021 13:05:44,358 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96224/20190427_Wheat_Malting_Above_Unspecific_2020-12-11_16-35-24.sky.zip
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10 Jan 2021 13:05:44,367 INFO : Updating dataFileUrls for run 20190427_Boiling_Above_Chymotryptic_2020-12-11_16-39-41.sky.zip; targetedms run ID 99841
10 Jan 2021 13:05:44,381 INFO : Updating dataFileUrl...
10 Jan 2021 13:05:44,381 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96225/20190427_Boiling_Above_Chymotryptic_2020-12-11_16-39-41/20190427_Boiling_Above_Chymotryptic.skyd
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10 Jan 2021 13:05:44,386 INFO : Updating dataFileUrl...
10 Jan 2021 13:05:44,386 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96225/20190427_Boiling_Above_Chymotryptic_2020-12-11_16-39-41.sky.zip
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10 Jan 2021 13:05:44,395 INFO : Updating dataFileUrls for run 20190427_Mashing_Above_Unspecific_2020-12-11_16-37-56.sky.zip; targetedms run ID 99840
10 Jan 2021 13:05:44,423 INFO : Updating dataFileUrl...
10 Jan 2021 13:05:44,423 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/Nebraska%20U%20FARRP%20-%20Tracking%20Gluten%20throughout%20Brewing%20Using%20N-Terminal%20Labeling%20Mass%20Spectrometry_9c0685c7-35a0-1039-b990-3013bb9b12b3/_temp__2021-01-10_10-36-01/export/xar/experiments_and_runs.xar.exploded/Run96226/20190427_Mashing_Above_Unspecific_2020-12-11_16-37-56/20190427_Mashing_Above_Unspecific.skyd
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10 Jan 2021 13:05:44,750 INFO : Creating a reviewer account.
10 Jan 2021 13:05:45,497 INFO : Created reviewer with email: User panorama+downs1@proteinms.net
10 Jan 2021 13:05:45,592 INFO : Hiding the Data Pipeline tab.
10 Jan 2021 13:05:46,144 INFO : Emailing submitter.
10 Jan 2021 13:05:46,816 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'