16 Aug 2021 13:59:20,488 INFO : Copying experiment "Utilizing Pine Needles to Temporally and Spatially Profile Per- and Polyfluoroalkyl Substances (PFAS)" from folder /NCSU - Baker Lab/Pine Needle PFAS to /Panorama Public/2021/NCSU Baker Lab - Pine Needle PFAS
16 Aug 2021 13:59:20,488 INFO : =======================================
16 Aug 2021 13:59:20,716 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
16 Aug 2021 13:59:20,716 INFO :
16 Aug 2021 13:59:20,717 INFO : Exporting experiment.
16 Aug 2021 13:59:23,371 INFO :
16 Aug 2021 13:59:23,371 INFO : Experiment export completed successfully.
16 Aug 2021 13:59:23,371 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
16 Aug 2021 13:59:23,427 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
16 Aug 2021 13:59:23,428 INFO :
16 Aug 2021 13:59:23,428 INFO : Importing experiment.
16 Aug 2021 13:59:23,433 INFO : Loading folder properties (folder type, settings and active modules)
16 Aug 2021 13:59:23,534 INFO : Done importing folder properties (folder type, settings and active modules)
16 Aug 2021 13:59:23,537 INFO : Loading etl definitions
16 Aug 2021 13:59:23,540 INFO : Loading wikis
16 Aug 2021 13:59:23,542 INFO : 0 wikis imported
16 Aug 2021 13:59:23,543 INFO : Done importing wikis
16 Aug 2021 13:59:23,543 INFO : Starting to copy files
16 Aug 2021 13:59:23,838 INFO : Copied 12 files
16 Aug 2021 13:59:23,838 INFO : Ensuring exp.data rows exist for imported files
16 Aug 2021 13:59:24,016 INFO : Starting Sample Type and Data Class import
16 Aug 2021 13:59:24,017 INFO : No types XAR file to process.
16 Aug 2021 13:59:24,017 INFO : Finished importing Sample Types and Data Classes
16 Aug 2021 13:59:24,021 INFO : Loading xar
16 Aug 2021 13:59:24,331 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-8997:TargetedMS.ImportSkyZip'
16 Aug 2021 13:59:24,334 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-8997:TargetedMS.ImportSkyZip.Core'
16 Aug 2021 13:59:24,336 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-8997:TargetedMS.ImportSkyZip.Output'
16 Aug 2021 13:59:24,337 DEBUG: Protocol import complete
16 Aug 2021 13:59:24,339 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-8997:Utilizing+Pine+Needles+to+Temporally+and+Spatially+Profile+Per-+and+Polyfluoroalkyl+Substances+%28PFAS%29'
16 Aug 2021 13:59:24,340 DEBUG: Experiment/Run group import complete
16 Aug 2021 13:59:24,349 DEBUG: Protocol action set import complete
16 Aug 2021 13:59:24,362 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8997:TargetedMS.ImportSkyZip'
16 Aug 2021 13:59:24,372 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8997:8ae7759f-e0d7-1039-a2b1-fea6ddf522ee'
16 Aug 2021 13:59:24,377 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8997:8ae7758d-e0d7-1039-a2b1-fea6ddf522ee'
16 Aug 2021 13:59:24,377 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8997:TargetedMS.ImportSkyZip.Core'
16 Aug 2021 13:59:24,381 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8997:TargetedMS.ImportSkyZip.Output'
16 Aug 2021 13:59:24,381 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8997:8ae776a9-e0d7-1039-a2b1-fea6ddf522ee'
16 Aug 2021 13:59:24,391 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8997:TargetedMS.ImportSkyZip'
16 Aug 2021 13:59:24,396 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8997:8ae78216-e0d7-1039-a2b1-fea6ddf522ee'
16 Aug 2021 13:59:24,401 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8997:8ae781fa-e0d7-1039-a2b1-fea6ddf522ee'
16 Aug 2021 13:59:24,401 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8997:TargetedMS.ImportSkyZip.Core'
16 Aug 2021 13:59:24,404 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8997:TargetedMS.ImportSkyZip.Output'
16 Aug 2021 13:59:24,405 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8997:8ae78274-e0d7-1039-a2b1-fea6ddf522ee'
16 Aug 2021 13:59:24,406 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Pine%20Needle%20PFAS_a2143327-e101-1039-a2b1-fea6ddf522ee/_temp__2021-08-16_13-59-19/export/xar/experiments_and_runs.xar.exploded/Run115676/PFAS_Pine_Spatial_FieldSamples_2021-08-16_11-52-29/PFAS_Pine_Spatial_FieldSamples.skyd into the system
16 Aug 2021 13:59:24,407 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Pine%20Needle%20PFAS_a2143327-e101-1039-a2b1-fea6ddf522ee/_temp__2021-08-16_13-59-19/export/xar/experiments_and_runs.xar.exploded/Run115676/PFAS_Pine_Spatial_FieldSamples_2021-08-16_11-52-29/PFAS_Pine_Spatial_FieldSamples.skyd into the system
16 Aug 2021 13:59:24,407 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Pine%20Needle%20PFAS_a2143327-e101-1039-a2b1-fea6ddf522ee/_temp__2021-08-16_13-59-19/export/xar/experiments_and_runs.xar.exploded/Run115676/PFAS_Pine_Spatial_FieldSamples_2021-08-16_11-52-29.sky.zip into the system
16 Aug 2021 13:59:24,409 INFO : Starting import from PFAS_Pine_Spatial_FieldSamples_2021-08-16_11-52-29.sky.zip
16 Aug 2021 13:59:24,413 INFO : Starting to import Skyline document from PFAS_Pine_Spatial_FieldSamples_2021-08-16_11-52-29.sky.zip
16 Aug 2021 13:59:24,417 INFO : Expanding PFAS_Pine_Spatial_FieldSamples.skyd
16 Aug 2021 13:59:24,565 INFO : Expanding PFAS_Pine_Spatial_FieldSamples.sky.view
16 Aug 2021 13:59:24,565 INFO : Expanding PFAS_Pine_Spatial_FieldSamples.sky
16 Aug 2021 13:59:24,573 INFO : Expanding PFAS_Pine_Spatial_FieldSamples.skyl
16 Aug 2021 13:59:24,584 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22
16 Aug 2021 13:59:24,605 INFO : 1% Done
16 Aug 2021 13:59:24,645 DEBUG: Starting to load chromatogram headers
16 Aug 2021 13:59:24,662 DEBUG: Done loading chromatogram headers
16 Aug 2021 13:59:24,763 INFO : Inserting PFAS (-) SIL
16 Aug 2021 13:59:24,785 INFO : 3% Done
16 Aug 2021 13:59:24,847 INFO : 4% Done
16 Aug 2021 13:59:24,895 INFO : 6% Done
16 Aug 2021 13:59:24,939 INFO : 7% Done
16 Aug 2021 13:59:24,980 INFO : 9% Done
16 Aug 2021 13:59:25,034 INFO : 11% Done
16 Aug 2021 13:59:25,083 INFO : 12% Done
16 Aug 2021 13:59:25,127 INFO : 14% Done
16 Aug 2021 13:59:25,164 INFO : 15% Done
16 Aug 2021 13:59:25,193 INFO : 17% Done
16 Aug 2021 13:59:25,223 INFO : 18% Done
16 Aug 2021 13:59:25,254 INFO : 20% Done
16 Aug 2021 13:59:25,297 INFO : 21% Done
16 Aug 2021 13:59:25,324 DEBUG: Total molecules inserted: 13
16 Aug 2021 13:59:25,325 INFO : Inserting PFAS (-) PFCA
16 Aug 2021 13:59:25,329 INFO : 23% Done
16 Aug 2021 13:59:25,364 INFO : 24% Done
16 Aug 2021 13:59:25,398 INFO : 25% Done
16 Aug 2021 13:59:25,428 INFO : 26% Done
16 Aug 2021 13:59:25,455 INFO : 28% Done
16 Aug 2021 13:59:25,481 INFO : 29% Done
16 Aug 2021 13:59:25,507 INFO : 31% Done
16 Aug 2021 13:59:25,542 INFO : 32% Done
16 Aug 2021 13:59:25,570 INFO : 33% Done
16 Aug 2021 13:59:25,599 INFO : 34% Done
16 Aug 2021 13:59:25,628 INFO : 35% Done
16 Aug 2021 13:59:25,662 INFO : 36% Done
16 Aug 2021 13:59:25,698 INFO : 37% Done
16 Aug 2021 13:59:25,762 INFO : 38% Done
16 Aug 2021 13:59:25,793 INFO : 39% Done
16 Aug 2021 13:59:25,820 DEBUG: Total molecules inserted: 16
16 Aug 2021 13:59:25,820 INFO : Inserting PFAS (-) PFSA
16 Aug 2021 13:59:25,824 INFO : 41% Done
16 Aug 2021 13:59:25,851 INFO : 42% Done
16 Aug 2021 13:59:25,875 INFO : 44% Done
16 Aug 2021 13:59:25,900 INFO : 45% Done
16 Aug 2021 13:59:25,930 INFO : 46% Done
16 Aug 2021 13:59:25,960 INFO : 47% Done
16 Aug 2021 13:59:25,989 INFO : 48% Done
16 Aug 2021 13:59:26,020 INFO : 50% Done
16 Aug 2021 13:59:26,048 INFO : 51% Done
16 Aug 2021 13:59:26,079 INFO : 52% Done
16 Aug 2021 13:59:26,102 INFO : 53% Done
16 Aug 2021 13:59:26,129 INFO : 54% Done
16 Aug 2021 13:59:26,178 INFO : 56% Done
16 Aug 2021 13:59:26,201 INFO : 57% Done
16 Aug 2021 13:59:26,230 INFO : 58% Done
16 Aug 2021 13:59:26,261 INFO : 59% Done
16 Aug 2021 13:59:26,313 INFO : 60% Done
16 Aug 2021 13:59:26,338 DEBUG: Total molecules inserted: 19
16 Aug 2021 13:59:26,338 INFO : Inserting PFAS (-) FT
16 Aug 2021 13:59:26,342 INFO : 61% Done
16 Aug 2021 13:59:26,371 INFO : 63% Done
16 Aug 2021 13:59:26,397 INFO : 64% Done
16 Aug 2021 13:59:26,426 INFO : 65% Done
16 Aug 2021 13:59:26,463 INFO : 67% Done
16 Aug 2021 13:59:26,495 DEBUG: Total molecules inserted: 5
16 Aug 2021 13:59:26,496 INFO : Inserting PFAS (-) PFECA
16 Aug 2021 13:59:26,531 INFO : 68% Done
16 Aug 2021 13:59:26,563 INFO : 69% Done
16 Aug 2021 13:59:26,593 INFO : 70% Done
16 Aug 2021 13:59:26,625 INFO : 72% Done
16 Aug 2021 13:59:26,672 DEBUG: Total molecules inserted: 6
16 Aug 2021 13:59:26,672 INFO : Inserting PFAS (-) PFESA
16 Aug 2021 13:59:26,678 INFO : 74% Done
16 Aug 2021 13:59:26,729 INFO : 75% Done
16 Aug 2021 13:59:26,756 INFO : 76% Done
16 Aug 2021 13:59:26,812 INFO : 77% Done
16 Aug 2021 13:59:26,842 INFO : 78% Done
16 Aug 2021 13:59:26,865 DEBUG: Total molecules inserted: 7
16 Aug 2021 13:59:26,865 INFO : Inserting PFAS (-) PFASA
16 Aug 2021 13:59:26,894 INFO : 79% Done
16 Aug 2021 13:59:26,925 INFO : 80% Done
16 Aug 2021 13:59:26,981 INFO : 81% Done
16 Aug 2021 13:59:27,011 DEBUG: Total molecules inserted: 5
16 Aug 2021 13:59:27,011 INFO : Inserting PFAS (-) PFP
16 Aug 2021 13:59:27,016 INFO : 82% Done
16 Aug 2021 13:59:27,046 INFO : 83% Done
16 Aug 2021 13:59:27,077 INFO : 84% Done
16 Aug 2021 13:59:27,102 DEBUG: Total molecules inserted: 3
16 Aug 2021 13:59:27,102 INFO : Inserting PFAS (-) Unknown
16 Aug 2021 13:59:27,117 INFO : 85% Done
16 Aug 2021 13:59:27,161 INFO : 86% Done
16 Aug 2021 13:59:27,226 INFO : 87% Done
16 Aug 2021 13:59:27,255 INFO : 89% Done
16 Aug 2021 13:59:27,285 INFO : 90% Done
16 Aug 2021 13:59:27,321 INFO : 91% Done
16 Aug 2021 13:59:27,347 INFO : 92% Done
16 Aug 2021 13:59:27,375 INFO : 93% Done
16 Aug 2021 13:59:27,433 INFO : 94% Done
16 Aug 2021 13:59:27,471 INFO : 95% Done
16 Aug 2021 13:59:27,502 INFO : 97% Done
16 Aug 2021 13:59:27,543 INFO : 98% Done
16 Aug 2021 13:59:27,564 DEBUG: Total molecules inserted: 14
16 Aug 2021 13:59:27,566 INFO : Done parsing Skyline document.
16 Aug 2021 13:59:35,064 INFO : Creating and populating temp tables for Proportion values
16 Aug 2021 13:59:35,103 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
16 Aug 2021 13:59:35,298 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
16 Aug 2021 13:59:35,455 INFO : Cleaning up temp tables
16 Aug 2021 13:59:35,654 INFO : Completed import of Skyline document from PFAS_Pine_Spatial_FieldSamples_2021-08-16_11-52-29.sky.zip
16 Aug 2021 13:59:35,657 INFO : 100% Done
16 Aug 2021 13:59:35,663 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Pine%20Needle%20PFAS_a2143327-e101-1039-a2b1-fea6ddf522ee/_temp__2021-08-16_13-59-19/export/xar/experiments_and_runs.xar.exploded/Run115676/PFAS_Pine_Spatial_FieldSamples_2021-08-16_11-52-29.sky.zip into the system
16 Aug 2021 13:59:35,663 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Pine%20Needle%20PFAS_a2143327-e101-1039-a2b1-fea6ddf522ee/_temp__2021-08-16_13-59-19/export/xar/experiments_and_runs.xar.exploded/Run115677/PFAS_Pine_Temporal_ArchivedSamples_2021-08-16_11-55-53/PFAS_Pine_Temporal_ArchivedSamples.skyd into the system
16 Aug 2021 13:59:35,665 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Pine%20Needle%20PFAS_a2143327-e101-1039-a2b1-fea6ddf522ee/_temp__2021-08-16_13-59-19/export/xar/experiments_and_runs.xar.exploded/Run115677/PFAS_Pine_Temporal_ArchivedSamples_2021-08-16_11-55-53/PFAS_Pine_Temporal_ArchivedSamples.skyd into the system
16 Aug 2021 13:59:35,665 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Pine%20Needle%20PFAS_a2143327-e101-1039-a2b1-fea6ddf522ee/_temp__2021-08-16_13-59-19/export/xar/experiments_and_runs.xar.exploded/Run115677/PFAS_Pine_Temporal_ArchivedSamples_2021-08-16_11-55-53.sky.zip into the system
16 Aug 2021 13:59:35,666 INFO : Starting import from PFAS_Pine_Temporal_ArchivedSamples_2021-08-16_11-55-53.sky.zip
16 Aug 2021 13:59:35,669 INFO : Starting to import Skyline document from PFAS_Pine_Temporal_ArchivedSamples_2021-08-16_11-55-53.sky.zip
16 Aug 2021 13:59:35,670 INFO : Expanding PFAS_Pine_Temporal_ArchivedSamples.skyd
16 Aug 2021 13:59:35,712 INFO : Expanding PFAS_Pine_Temporal_ArchivedSamples.sky.view
16 Aug 2021 13:59:35,713 INFO : Expanding PFAS_Pine_Temporal_ArchivedSamples.sky
16 Aug 2021 13:59:35,715 INFO : Expanding PFAS_Pine_Temporal_ArchivedSamples.skyl
16 Aug 2021 13:59:35,718 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22
16 Aug 2021 13:59:35,724 INFO : 2% Done
16 Aug 2021 13:59:35,728 DEBUG: Starting to load chromatogram headers
16 Aug 2021 13:59:35,730 DEBUG: Done loading chromatogram headers
16 Aug 2021 13:59:35,811 INFO : Inserting PFAS (-) SIL
16 Aug 2021 13:59:35,817 INFO : 4% Done
16 Aug 2021 13:59:35,833 INFO : 6% Done
16 Aug 2021 13:59:35,846 INFO : 8% Done
16 Aug 2021 13:59:35,859 INFO : 11% Done
16 Aug 2021 13:59:35,872 INFO : 13% Done
16 Aug 2021 13:59:35,888 INFO : 15% Done
16 Aug 2021 13:59:35,909 INFO : 17% Done
16 Aug 2021 13:59:35,924 INFO : 19% Done
16 Aug 2021 13:59:35,940 INFO : 22% Done
16 Aug 2021 13:59:35,956 INFO : 24% Done
16 Aug 2021 13:59:35,971 INFO : 25% Done
16 Aug 2021 13:59:35,983 INFO : 27% Done
16 Aug 2021 13:59:35,994 INFO : 29% Done
16 Aug 2021 13:59:36,005 INFO : 31% Done
16 Aug 2021 13:59:36,014 DEBUG: Total molecules inserted: 14
16 Aug 2021 13:59:36,014 INFO : Inserting PFAS (-) PFCA
16 Aug 2021 13:59:36,017 INFO : 33% Done
16 Aug 2021 13:59:36,030 INFO : 35% Done
16 Aug 2021 13:59:36,043 INFO : 37% Done
16 Aug 2021 13:59:36,054 INFO : 39% Done
16 Aug 2021 13:59:36,066 INFO : 42% Done
16 Aug 2021 13:59:36,078 INFO : 44% Done
16 Aug 2021 13:59:36,090 INFO : 45% Done
16 Aug 2021 13:59:36,106 INFO : 48% Done
16 Aug 2021 13:59:36,118 INFO : 49% Done
16 Aug 2021 13:59:36,131 INFO : 50% Done
16 Aug 2021 13:59:36,144 INFO : 52% Done
16 Aug 2021 13:59:36,155 DEBUG: Total molecules inserted: 11
16 Aug 2021 13:59:36,155 INFO : Inserting PFAS (-) PFSA
16 Aug 2021 13:59:36,158 INFO : 54% Done
16 Aug 2021 13:59:36,170 INFO : 56% Done
16 Aug 2021 13:59:36,182 INFO : 58% Done
16 Aug 2021 13:59:36,194 INFO : 60% Done
16 Aug 2021 13:59:36,209 INFO : 62% Done
16 Aug 2021 13:59:36,226 INFO : 64% Done
16 Aug 2021 13:59:36,244 INFO : 66% Done
16 Aug 2021 13:59:36,283 INFO : 69% Done
16 Aug 2021 13:59:36,296 INFO : 70% Done
16 Aug 2021 13:59:36,309 DEBUG: Total molecules inserted: 10
16 Aug 2021 13:59:36,309 INFO : Inserting PFAS (-) FT
16 Aug 2021 13:59:36,312 INFO : 71% Done
16 Aug 2021 13:59:36,326 INFO : 73% Done
16 Aug 2021 13:59:36,339 INFO : 74% Done
16 Aug 2021 13:59:36,353 INFO : 75% Done
16 Aug 2021 13:59:36,366 INFO : 76% Done
16 Aug 2021 13:59:36,378 DEBUG: Total molecules inserted: 5
16 Aug 2021 13:59:36,379 INFO : Inserting PFAS (-) PFECA
16 Aug 2021 13:59:36,383 INFO : 77% Done
16 Aug 2021 13:59:36,396 INFO : 79% Done
16 Aug 2021 13:59:36,409 DEBUG: Total molecules inserted: 2
16 Aug 2021 13:59:36,409 INFO : Inserting PFAS (-) PFESA
16 Aug 2021 13:59:36,412 INFO : 80% Done
16 Aug 2021 13:59:36,425 INFO : 82% Done
16 Aug 2021 13:59:36,438 INFO : 83% Done
16 Aug 2021 13:59:36,448 DEBUG: Total molecules inserted: 3
16 Aug 2021 13:59:36,449 INFO : Inserting PFAS (-) PFASA
16 Aug 2021 13:59:36,452 INFO : 84% Done
16 Aug 2021 13:59:36,466 INFO : 85% Done
16 Aug 2021 13:59:36,479 INFO : 87% Done
16 Aug 2021 13:59:36,491 DEBUG: Total molecules inserted: 3
16 Aug 2021 13:59:36,492 INFO : Inserting PFAS (-) PFP
16 Aug 2021 13:59:36,495 INFO : 88% Done
16 Aug 2021 13:59:36,508 INFO : 89% Done
16 Aug 2021 13:59:36,521 DEBUG: Total molecules inserted: 2
16 Aug 2021 13:59:36,521 INFO : Inserting PFAS (-) Unknown
16 Aug 2021 13:59:36,529 INFO : 90% Done
16 Aug 2021 13:59:36,546 INFO : 92% Done
16 Aug 2021 13:59:36,559 INFO : 94% Done
16 Aug 2021 13:59:36,578 INFO : 95% Done
16 Aug 2021 13:59:36,597 INFO : 97% Done
16 Aug 2021 13:59:36,616 INFO : 98% Done
16 Aug 2021 13:59:36,626 DEBUG: Total molecules inserted: 6
16 Aug 2021 13:59:36,627 INFO : Done parsing Skyline document.
16 Aug 2021 13:59:37,260 INFO : Creating and populating temp tables for Proportion values
16 Aug 2021 13:59:37,292 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
16 Aug 2021 13:59:37,374 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
16 Aug 2021 13:59:37,412 INFO : Cleaning up temp tables
16 Aug 2021 13:59:37,602 INFO : Completed import of Skyline document from PFAS_Pine_Temporal_ArchivedSamples_2021-08-16_11-55-53.sky.zip
16 Aug 2021 13:59:37,605 INFO : 100% Done
16 Aug 2021 13:59:37,609 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Pine%20Needle%20PFAS_a2143327-e101-1039-a2b1-fea6ddf522ee/_temp__2021-08-16_13-59-19/export/xar/experiments_and_runs.xar.exploded/Run115677/PFAS_Pine_Temporal_ArchivedSamples_2021-08-16_11-55-53.sky.zip into the system
16 Aug 2021 13:59:37,621 INFO : Done importing xar
16 Aug 2021 13:59:37,624 INFO : Loading pages and webpart properties
16 Aug 2021 13:59:37,708 INFO : Done importing pages and webpart properties
16 Aug 2021 13:59:37,708 INFO :
16 Aug 2021 13:59:37,708 INFO : Experiment import completed successfully.
16 Aug 2021 13:59:37,708 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
16 Aug 2021 13:59:37,754 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
16 Aug 2021 13:59:37,755 INFO :
16 Aug 2021 13:59:37,755 INFO : Finishing up experiment copy.
16 Aug 2021 13:59:37,757 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
16 Aug 2021 13:59:37,759 INFO : Assigning a DOI.
16 Aug 2021 13:59:39,224 INFO : Assigned DOI: 10.6069/9e42-3j32
16 Aug 2021 13:59:39,229 INFO : Updating access URL to point to the new copy of the data.
16 Aug 2021 13:59:39,243 INFO : Setting the 'copied' timestamp and journalExperimentId on the JournalExperiment table.
16 Aug 2021 13:59:39,244 INFO : Removing copy permissions given to journal.
16 Aug 2021 13:59:39,253 INFO : Adding read permissions to all users that are folder admins in the source container.
16 Aug 2021 13:59:39,259 INFO : Setting the TargetedMS folder type to 'Experimental Data'
16 Aug 2021 13:59:39,266 INFO : Updating the 'Raw Data' tab configuration
16 Aug 2021 13:59:39,269 INFO : Updating dataFileUrls for run PFAS_Pine_Spatial_FieldSamples_2021-08-16_11-52-29.sky.zip; targetedms run ID 118201
16 Aug 2021 13:59:39,269 INFO : Updating dataFileUrl...
16 Aug 2021 13:59:39,269 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Pine%20Needle%20PFAS_a2143327-e101-1039-a2b1-fea6ddf522ee/_temp__2021-08-16_13-59-19/export/xar/experiments_and_runs.xar.exploded/Run115676/PFAS_Pine_Spatial_FieldSamples_2021-08-16_11-52-29.sky.zip
16 Aug 2021 13:59:39,269 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/NCSU%20Baker%20Lab%20-%20Pine%20Needle%20PFAS/@files/PFAS_Pine_Spatial_FieldSamples_2021-08-16_11-52-29.sky.zip
16 Aug 2021 13:59:39,271 INFO : Updating dataFileUrl...
16 Aug 2021 13:59:39,272 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Pine%20Needle%20PFAS_a2143327-e101-1039-a2b1-fea6ddf522ee/_temp__2021-08-16_13-59-19/export/xar/experiments_and_runs.xar.exploded/Run115676/PFAS_Pine_Spatial_FieldSamples_2021-08-16_11-52-29/PFAS_Pine_Spatial_FieldSamples.skyd
16 Aug 2021 13:59:39,272 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/NCSU%20Baker%20Lab%20-%20Pine%20Needle%20PFAS/@files/PFAS_Pine_Spatial_FieldSamples_2021-08-16_11-52-29/PFAS_Pine_Spatial_FieldSamples.skyd
16 Aug 2021 13:59:39,275 INFO : Updating dataFileUrls for run PFAS_Pine_Temporal_ArchivedSamples_2021-08-16_11-55-53.sky.zip; targetedms run ID 118202
16 Aug 2021 13:59:39,275 INFO : Updating dataFileUrl...
16 Aug 2021 13:59:39,275 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Pine%20Needle%20PFAS_a2143327-e101-1039-a2b1-fea6ddf522ee/_temp__2021-08-16_13-59-19/export/xar/experiments_and_runs.xar.exploded/Run115677/PFAS_Pine_Temporal_ArchivedSamples_2021-08-16_11-55-53.sky.zip
16 Aug 2021 13:59:39,275 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/NCSU%20Baker%20Lab%20-%20Pine%20Needle%20PFAS/@files/PFAS_Pine_Temporal_ArchivedSamples_2021-08-16_11-55-53.sky.zip
16 Aug 2021 13:59:39,278 INFO : Updating dataFileUrl...
16 Aug 2021 13:59:39,278 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NCSU%20Baker%20Lab%20-%20Pine%20Needle%20PFAS_a2143327-e101-1039-a2b1-fea6ddf522ee/_temp__2021-08-16_13-59-19/export/xar/experiments_and_runs.xar.exploded/Run115677/PFAS_Pine_Temporal_ArchivedSamples_2021-08-16_11-55-53/PFAS_Pine_Temporal_ArchivedSamples.skyd
16 Aug 2021 13:59:39,278 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/NCSU%20Baker%20Lab%20-%20Pine%20Needle%20PFAS/@files/PFAS_Pine_Temporal_ArchivedSamples_2021-08-16_11-55-53/PFAS_Pine_Temporal_ArchivedSamples.skyd
16 Aug 2021 13:59:39,280 INFO : Making folder public.
16 Aug 2021 13:59:39,286 INFO : Hiding the Data Pipeline tab.
16 Aug 2021 13:59:39,536 INFO : Emailing submitter.
16 Aug 2021 13:59:39,691 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'