Skyline document import - Plasma_Lipid_Library_Negative_iRT_Test.sky.zip: /Panorama Public/2021/NCSU Baker Lab

Skyline document import - Plasma_Lipid_Library_Negative_iRT_Test.sky.zip

NCSU Baker Lab - Lipid Libraries

Job Status

Created:

2021-02-27 10:54:26

Modified:

2021-09-29 08:31:59

Email:

vsharma@uw.edu

Status:

COMPLETE

Info:

Description:

Skyline document import - Plasma_Lipid_Library_Negative_iRT_Test.sky.zip

File Path:

/data/labkey/files/Panorama Public/2021/NCSU Baker Lab - Lipid Libraries/@files/Plasma_Lipid_Library_Negative_iRT_Test.sky_2021-02-27_10-54-25.log

Files:

Plasma_Lipid_Library_Negative_iRT_Test.sky_2021-02-27_10-54-25.log

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27 Feb 2021 10:54:26,135 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

27 Feb 2021 10:54:26,162 INFO : Starting to import Skyline document from Plasma_Lipid_Library_Negative_iRT_Test.sky.zip

27 Feb 2021 10:54:26,165 INFO : Expanding Negative_Plasma_Lipid_iRT.irtdb

27 Feb 2021 10:54:26,217 INFO : Expanding Plasma_Lipids_Negative.blib

27 Feb 2021 10:54:26,241 INFO : Expanding 1_Plasma_Lipid_Library_Negative_Test_3.skyd

27 Feb 2021 10:54:27,128 INFO : Expanding 1_Plasma_Lipid_Library_Negative_Test_3.sky.view

27 Feb 2021 10:54:27,140 INFO : Expanding 1_Plasma_Lipid_Library_Negative_Test_3.sky

27 Feb 2021 10:54:27,203 INFO : Expanding 1_Plasma_Lipid_Library_Negative_Test_3.skyl

27 Feb 2021 10:54:27,301 WARN : The version of this Skyline document is 20.22. This is newer than the highest supported version 20.2

27 Feb 2021 10:54:27,611 DEBUG: Starting to load chromatogram headers

27 Feb 2021 10:54:27,615 DEBUG: Done loading chromatogram headers

27 Feb 2021 10:54:28,397 INFO : Inserting Negative Plasma Lipid iRT Calibrants

27 Feb 2021 10:54:28,417 INFO : 1% Done

27 Feb 2021 10:54:28,601 INFO : 2% Done

27 Feb 2021 10:54:28,785 INFO : 3% Done

27 Feb 2021 10:54:28,948 INFO : 4% Done

27 Feb 2021 10:54:29,038 INFO : 5% Done

27 Feb 2021 10:54:29,121 INFO : 6% Done

27 Feb 2021 10:54:29,182 INFO : 7% Done

27 Feb 2021 10:54:29,260 INFO : 8% Done

27 Feb 2021 10:54:29,313 DEBUG: Total molecules inserted: 20

27 Feb 2021 10:54:29,314 INFO : Inserting Cer (Ceramide)

27 Feb 2021 10:54:29,399 INFO : 9% Done

27 Feb 2021 10:54:29,460 INFO : 10% Done

27 Feb 2021 10:54:29,550 INFO : 11% Done

27 Feb 2021 10:54:29,721 INFO : 12% Done

27 Feb 2021 10:54:29,818 INFO : 13% Done

27 Feb 2021 10:54:29,983 INFO : 14% Done

27 Feb 2021 10:54:30,086 INFO : 15% Done

27 Feb 2021 10:54:30,195 INFO : 16% Done

27 Feb 2021 10:54:30,988 INFO : 17% Done

27 Feb 2021 10:54:31,178 INFO : 18% Done

27 Feb 2021 10:54:31,279 INFO : 19% Done

27 Feb 2021 10:54:31,379 INFO : 20% Done

27 Feb 2021 10:54:31,524 INFO : 21% Done

27 Feb 2021 10:54:31,620 DEBUG: Total molecules inserted: 16

27 Feb 2021 10:54:31,621 INFO : Inserting FA (Fatty acyl)

27 Feb 2021 10:54:31,767 INFO : 22% Done

27 Feb 2021 10:54:32,095 INFO : 23% Done

27 Feb 2021 10:54:32,236 INFO : 24% Done

27 Feb 2021 10:54:32,410 INFO : 25% Done

27 Feb 2021 10:54:32,660 INFO : 26% Done

27 Feb 2021 10:54:32,756 INFO : 27% Done

27 Feb 2021 10:54:32,789 DEBUG: Inserted 50 molecules

27 Feb 2021 10:54:32,820 DEBUG: Total molecules inserted: 51

27 Feb 2021 10:54:32,821 INFO : Inserting GM3 (Ganglioside)

27 Feb 2021 10:54:32,892 INFO : 28% Done

27 Feb 2021 10:54:32,994 DEBUG: Total molecules inserted: 4

27 Feb 2021 10:54:32,995 INFO : Inserting HexCer (Glc/Glu Glycosphingolipid)

27 Feb 2021 10:54:33,039 INFO : 29% Done

27 Feb 2021 10:54:33,154 INFO : 30% Done

27 Feb 2021 10:54:33,312 INFO : 31% Done

27 Feb 2021 10:54:33,438 INFO : 32% Done

27 Feb 2021 10:54:33,554 INFO : 33% Done

27 Feb 2021 10:54:33,785 INFO : 34% Done

27 Feb 2021 10:54:33,902 INFO : 35% Done

27 Feb 2021 10:54:34,024 DEBUG: Total molecules inserted: 8

27 Feb 2021 10:54:34,025 INFO : Inserting LPC (Lyso phosphatidylcholine)

27 Feb 2021 10:54:34,042 INFO : 36% Done

27 Feb 2021 10:54:34,191 INFO : 37% Done

27 Feb 2021 10:54:34,313 INFO : 38% Done

27 Feb 2021 10:54:34,497 INFO : 39% Done

27 Feb 2021 10:54:34,636 INFO : 40% Done

27 Feb 2021 10:54:34,731 INFO : 41% Done

27 Feb 2021 10:54:34,835 DEBUG: Total molecules inserted: 26

27 Feb 2021 10:54:34,836 INFO : Inserting LPE (Lyso phosphatidylethanolamine)

27 Feb 2021 10:54:34,871 INFO : 42% Done

27 Feb 2021 10:54:35,002 INFO : 43% Done

27 Feb 2021 10:54:35,146 INFO : 44% Done

27 Feb 2021 10:54:35,201 DEBUG: Total molecules inserted: 12

27 Feb 2021 10:54:35,202 INFO : Inserting PA (Phosphatidic acid)

27 Feb 2021 10:54:35,258 DEBUG: Total molecules inserted: 1

27 Feb 2021 10:54:35,259 INFO : Inserting PC (Phosphatidylcholine)

27 Feb 2021 10:54:35,266 INFO : 45% Done

27 Feb 2021 10:54:35,420 INFO : 46% Done

27 Feb 2021 10:54:35,589 INFO : 47% Done

27 Feb 2021 10:54:35,772 INFO : 48% Done

27 Feb 2021 10:54:35,951 INFO : 49% Done

27 Feb 2021 10:54:36,035 INFO : 50% Done

27 Feb 2021 10:54:36,241 INFO : 51% Done

27 Feb 2021 10:54:36,367 INFO : 52% Done

27 Feb 2021 10:54:36,503 INFO : 53% Done

27 Feb 2021 10:54:36,630 INFO : 54% Done

27 Feb 2021 10:54:36,753 INFO : 55% Done

27 Feb 2021 10:54:36,904 INFO : 56% Done

27 Feb 2021 10:54:37,035 INFO : 57% Done

27 Feb 2021 10:54:37,182 INFO : 58% Done

27 Feb 2021 10:54:37,305 INFO : 59% Done

27 Feb 2021 10:54:37,429 INFO : 60% Done

27 Feb 2021 10:54:37,471 DEBUG: Inserted 50 molecules

27 Feb 2021 10:54:37,554 INFO : 61% Done

27 Feb 2021 10:54:37,707 DEBUG: Total molecules inserted: 54

27 Feb 2021 10:54:37,708 INFO : Inserting PC(O/P-) (Akyl/alkenyl ether phosphatidylcholine)

27 Feb 2021 10:54:37,754 INFO : 62% Done

27 Feb 2021 10:54:37,849 INFO : 63% Done

27 Feb 2021 10:54:38,016 INFO : 64% Done

27 Feb 2021 10:54:38,206 INFO : 65% Done

27 Feb 2021 10:54:38,359 INFO : 66% Done

27 Feb 2021 10:54:38,531 INFO : 67% Done

27 Feb 2021 10:54:38,655 INFO : 68% Done

27 Feb 2021 10:54:38,678 DEBUG: Total molecules inserted: 22

27 Feb 2021 10:54:38,679 INFO : Inserting PE (Phosphatidylethanolamine)

27 Feb 2021 10:54:38,846 INFO : 69% Done

27 Feb 2021 10:54:38,973 INFO : 70% Done

27 Feb 2021 10:54:39,142 INFO : 71% Done

27 Feb 2021 10:54:39,305 INFO : 72% Done

27 Feb 2021 10:54:39,419 INFO : 73% Done

27 Feb 2021 10:54:39,625 INFO : 74% Done

27 Feb 2021 10:54:39,859 INFO : 75% Done

27 Feb 2021 10:54:40,007 INFO : 76% Done

27 Feb 2021 10:54:40,150 INFO : 77% Done

27 Feb 2021 10:54:40,293 INFO : 78% Done

27 Feb 2021 10:54:40,372 DEBUG: Total molecules inserted: 44

27 Feb 2021 10:54:40,373 INFO : Inserting PE(O/P-) (Alkyl/alkenyl ether phosphatidylethanolamine)

27 Feb 2021 10:54:40,498 INFO : 79% Done

27 Feb 2021 10:54:40,620 INFO : 80% Done

27 Feb 2021 10:54:40,852 INFO : 81% Done

27 Feb 2021 10:54:41,040 INFO : 82% Done

27 Feb 2021 10:54:41,248 INFO : 83% Done

27 Feb 2021 10:54:41,387 INFO : 84% Done

27 Feb 2021 10:54:41,496 INFO : 85% Done

27 Feb 2021 10:54:41,663 INFO : 86% Done

27 Feb 2021 10:54:41,724 DEBUG: Total molecules inserted: 30

27 Feb 2021 10:54:41,725 INFO : Inserting PG (Phosphatidylglycerol)

27 Feb 2021 10:54:41,874 DEBUG: Total molecules inserted: 3

27 Feb 2021 10:54:41,876 INFO : Inserting PI (Phosphatidylinositol)

27 Feb 2021 10:54:41,884 INFO : 87% Done

27 Feb 2021 10:54:42,028 INFO : 88% Done

27 Feb 2021 10:54:42,874 INFO : 89% Done

27 Feb 2021 10:54:43,116 INFO : 90% Done

27 Feb 2021 10:54:43,199 INFO : 91% Done

27 Feb 2021 10:54:43,483 INFO : 92% Done

27 Feb 2021 10:54:43,603 DEBUG: Total molecules inserted: 19

27 Feb 2021 10:54:43,604 INFO : Inserting SM (Sphingomyelin)

27 Feb 2021 10:54:43,712 INFO : 93% Done

27 Feb 2021 10:54:43,822 INFO : 94% Done

27 Feb 2021 10:54:43,909 INFO : 95% Done

27 Feb 2021 10:54:44,067 INFO : 96% Done

27 Feb 2021 10:54:44,151 INFO : 97% Done

27 Feb 2021 10:54:44,270 INFO : 98% Done

27 Feb 2021 10:54:44,366 DEBUG: Total molecules inserted: 16

27 Feb 2021 10:54:44,369 INFO : Done parsing Skyline document.

27 Feb 2021 10:54:46,736 INFO : Creating and populating temp tables for Proportion values

27 Feb 2021 10:54:46,802 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

27 Feb 2021 10:54:47,726 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

27 Feb 2021 10:54:47,910 INFO : Cleaning up temp tables

27 Feb 2021 10:54:48,370 INFO : Completed import of Skyline document from Plasma_Lipid_Library_Negative_iRT_Test.sky.zip

27 Feb 2021 10:54:48,378 INFO : 100% Done

27 Feb 2021 10:54:48,478 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'