22 Mar 2021 20:14:46,406 INFO : Copying experiment "Quantification of Raloxifene Specific 471 Da Adducts in CYP3A4 and P450-Reductase" from folder /MacCoss/Alex Zelter/CYP3A4 Raloxifene to /Panorama Public/2021/MacCoss - CYP3A4 Raloxifene
22 Mar 2021 20:14:46,406 INFO : =======================================
22 Mar 2021 20:14:46,804 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
22 Mar 2021 20:14:46,805 INFO : 
22 Mar 2021 20:14:46,805 INFO : Exporting experiment.
22 Mar 2021 20:19:17,859 INFO : 
22 Mar 2021 20:19:17,859 INFO : Experiment export completed successfully.
22 Mar 2021 20:19:17,859 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
22 Mar 2021 20:19:17,994 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
22 Mar 2021 20:19:17,994 INFO : 
22 Mar 2021 20:19:17,995 INFO : Importing experiment.
22 Mar 2021 20:19:18,021 INFO : Loading folder properties (folder type, settings and active modules)
22 Mar 2021 20:19:18,158 INFO : Done importing folder properties (folder type, settings and active modules)
22 Mar 2021 20:19:18,163 INFO : Loading etl definitions
22 Mar 2021 20:19:18,168 INFO : Loading wikis
22 Mar 2021 20:19:18,202 INFO : 0 wikis imported
22 Mar 2021 20:19:18,203 INFO : Done importing wikis
22 Mar 2021 20:19:18,203 INFO : Starting to copy files
22 Mar 2021 20:20:24,610 INFO : Copied 53 files
22 Mar 2021 20:20:24,610 INFO : Ensuring exp.data rows exist for imported files
22 Mar 2021 20:20:25,994 INFO : Loading xar
22 Mar 2021 20:20:27,586 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-8361:TargetedMS.ImportSkyZip'
22 Mar 2021 20:20:27,592 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-8361:TargetedMS.ImportSkyZip.Core'
22 Mar 2021 20:20:27,598 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-8361:TargetedMS.ImportSkyZip.Output'
22 Mar 2021 20:20:27,598 DEBUG: Protocol import complete
22 Mar 2021 20:20:27,633 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-8361:Quantification+of+Raloxifene+Specific+471+Da+Adducts+in+CYP3A4+and+P450-Reductase'
22 Mar 2021 20:20:27,633 DEBUG: Experiment/Run group import complete
22 Mar 2021 20:20:27,771 DEBUG: Protocol action set import complete
22 Mar 2021 20:20:27,847 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8361:TargetedMS.ImportSkyZip'
22 Mar 2021 20:20:27,944 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8361:8d4a6fdb-674d-1039-9674-3013bb9b91fd'
22 Mar 2021 20:20:27,957 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8361:8d4a6fad-674d-1039-9674-3013bb9b91fd'
22 Mar 2021 20:20:27,957 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8361:TargetedMS.ImportSkyZip.Core'
22 Mar 2021 20:20:27,966 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8361:TargetedMS.ImportSkyZip.Output'
22 Mar 2021 20:20:27,967 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8361:8d4a7028-674d-1039-9674-3013bb9b91fd'
22 Mar 2021 20:20:27,989 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8361:TargetedMS.ImportSkyZip'
22 Mar 2021 20:20:28,005 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8361:3a47050f-5ec7-1039-9674-3013bb9b91fd'
22 Mar 2021 20:20:28,017 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8361:3a4704f6-5ec7-1039-9674-3013bb9b91fd'
22 Mar 2021 20:20:28,018 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8361:TargetedMS.ImportSkyZip.Core'
22 Mar 2021 20:20:28,024 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8361:TargetedMS.ImportSkyZip.Output'
22 Mar 2021 20:20:28,026 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8361:3a47052a-5ec7-1039-9674-3013bb9b91fd'
22 Mar 2021 20:20:28,030 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/MacCoss%20-%20CYP3A4%20Raloxifene_c07ffacd-6db2-1039-9674-3013bb9b91fd/_temp__2021-03-22_20-14-45/export/xar/experiments_and_runs.xar.exploded/Run103638/untreated-vs-raloxifene-treated-CYP3A4-471Da-modified-peptides_2021-03-14_16-52-12/untreated-vs-raloxifene-treated-CYP3A4-471Da-modified-peptides.skyd into the system
22 Mar 2021 20:20:28,032 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/MacCoss%20-%20CYP3A4%20Raloxifene_c07ffacd-6db2-1039-9674-3013bb9b91fd/_temp__2021-03-22_20-14-45/export/xar/experiments_and_runs.xar.exploded/Run103638/untreated-vs-raloxifene-treated-CYP3A4-471Da-modified-peptides_2021-03-14_16-52-12/untreated-vs-raloxifene-treated-CYP3A4-471Da-modified-peptides.skyd into the system
22 Mar 2021 20:20:28,032 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/MacCoss%20-%20CYP3A4%20Raloxifene_c07ffacd-6db2-1039-9674-3013bb9b91fd/_temp__2021-03-22_20-14-45/export/xar/experiments_and_runs.xar.exploded/Run103638/untreated-vs-raloxifene-treated-CYP3A4-471Da-modified-peptides_2021-03-14_16-52-12.sky.zip into the system
22 Mar 2021 20:20:28,035 INFO : Starting import from untreated-vs-raloxifene-treated-CYP3A4-471Da-modified-peptides_2021-03-14_16-52-12.sky.zip
22 Mar 2021 20:20:28,046 INFO : Starting to import Skyline document from untreated-vs-raloxifene-treated-CYP3A4-471Da-modified-peptides_2021-03-14_16-52-12.sky.zip
22 Mar 2021 20:20:28,058 INFO : Expanding untreated-vs-raloxifene-treated-CYP3A4-471Da-modified-peptides.skyd
22 Mar 2021 20:20:28,461 INFO : Expanding untreated-vs-raloxifene-treated-CYP3A4-471Da-modified-peptides.sky.view
22 Mar 2021 20:20:28,462 INFO : Expanding untreated-vs-raloxifene-treated-CYP3A4-471Da-modified-peptides.sky
22 Mar 2021 20:20:28,464 INFO : Expanding untreated-vs-raloxifene-treated-CYP3A4-471Da-modified-peptides.skyl
22 Mar 2021 20:20:28,484 WARN : The version of this Skyline document is 20.22. This is newer than the highest supported version 20.2
22 Mar 2021 20:20:28,534 INFO : 4% Done
22 Mar 2021 20:20:28,555 DEBUG: Starting to load chromatogram headers
22 Mar 2021 20:20:28,555 DEBUG: Done loading chromatogram headers
22 Mar 2021 20:20:28,827 INFO : 7% Done
22 Mar 2021 20:20:28,886 INFO : Inserting hCYP3A4pCWOri
22 Mar 2021 20:20:28,909 INFO : 9% Done
22 Mar 2021 20:20:29,036 INFO : 14% Done
22 Mar 2021 20:20:29,117 INFO : 19% Done
22 Mar 2021 20:20:29,132 INFO : 24% Done
22 Mar 2021 20:20:29,160 INFO : 27% Done
22 Mar 2021 20:20:29,219 INFO : 30% Done
22 Mar 2021 20:20:29,233 INFO : 39% Done
22 Mar 2021 20:20:29,277 INFO : 44% Done
22 Mar 2021 20:20:29,313 INFO : 56% Done
22 Mar 2021 20:20:29,342 INFO : 58% Done
22 Mar 2021 20:20:29,380 INFO : 63% Done
22 Mar 2021 20:20:29,396 INFO : 68% Done
22 Mar 2021 20:20:29,427 INFO : 70% Done
22 Mar 2021 20:20:29,471 INFO : 74% Done
22 Mar 2021 20:20:29,502 INFO : 83% Done
22 Mar 2021 20:20:29,591 DEBUG: Total peptides inserted: 15
22 Mar 2021 20:20:29,756 INFO : Inserting sp|P00388|NCPR_RAT
22 Mar 2021 20:20:29,808 INFO : 91% Done
22 Mar 2021 20:20:29,885 INFO : 98% Done
22 Mar 2021 20:20:29,945 DEBUG: Total peptides inserted: 2
22 Mar 2021 20:20:29,946 INFO : Done parsing Skyline document.
22 Mar 2021 20:20:31,444 INFO : Creating and populating temp tables for Proportion values
22 Mar 2021 20:20:31,459 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
22 Mar 2021 20:20:31,490 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
22 Mar 2021 20:20:31,498 INFO : Cleaning up temp tables
22 Mar 2021 20:20:32,039 INFO : Completed import of Skyline document from untreated-vs-raloxifene-treated-CYP3A4-471Da-modified-peptides_2021-03-14_16-52-12.sky.zip
22 Mar 2021 20:20:32,052 INFO : 100% Done
22 Mar 2021 20:20:32,062 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/MacCoss%20-%20CYP3A4%20Raloxifene_c07ffacd-6db2-1039-9674-3013bb9b91fd/_temp__2021-03-22_20-14-45/export/xar/experiments_and_runs.xar.exploded/Run103638/untreated-vs-raloxifene-treated-CYP3A4-471Da-modified-peptides_2021-03-14_16-52-12.sky.zip into the system
22 Mar 2021 20:20:32,063 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/MacCoss%20-%20CYP3A4%20Raloxifene_c07ffacd-6db2-1039-9674-3013bb9b91fd/_temp__2021-03-22_20-14-45/export/xar/experiments_and_runs.xar.exploded/Run102998/raloxifene-and-untreated-normalization-quant_2021-03-03_19-28-58/raloxifene-and-untreated-normalization-quant.skyd into the system
22 Mar 2021 20:20:32,065 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/MacCoss%20-%20CYP3A4%20Raloxifene_c07ffacd-6db2-1039-9674-3013bb9b91fd/_temp__2021-03-22_20-14-45/export/xar/experiments_and_runs.xar.exploded/Run102998/raloxifene-and-untreated-normalization-quant_2021-03-03_19-28-58/raloxifene-and-untreated-normalization-quant.skyd into the system
22 Mar 2021 20:20:32,065 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/MacCoss%20-%20CYP3A4%20Raloxifene_c07ffacd-6db2-1039-9674-3013bb9b91fd/_temp__2021-03-22_20-14-45/export/xar/experiments_and_runs.xar.exploded/Run102998/raloxifene-and-untreated-normalization-quant_2021-03-03_19-28-58.sky.zip into the system
22 Mar 2021 20:20:32,069 INFO : Starting import from raloxifene-and-untreated-normalization-quant_2021-03-03_19-28-58.sky.zip
22 Mar 2021 20:20:32,075 INFO : Starting to import Skyline document from raloxifene-and-untreated-normalization-quant_2021-03-03_19-28-58.sky.zip
22 Mar 2021 20:20:32,088 INFO : Expanding raloxifene-and-untreated-normalization-quant.skyd
22 Mar 2021 20:20:32,446 INFO : Expanding raloxifene-and-untreated-normalization-quant.sky.view
22 Mar 2021 20:20:32,447 INFO : Expanding raloxifene-and-untreated-normalization-quant.sky
22 Mar 2021 20:20:32,449 INFO : Expanding raloxifene-and-untreated-normalization-quant.skyl
22 Mar 2021 20:20:32,455 WARN : The version of this Skyline document is 20.22. This is newer than the highest supported version 20.2
22 Mar 2021 20:20:32,465 INFO : 5% Done
22 Mar 2021 20:20:32,480 DEBUG: Starting to load chromatogram headers
22 Mar 2021 20:20:32,481 DEBUG: Done loading chromatogram headers
22 Mar 2021 20:20:32,618 INFO : 10% Done
22 Mar 2021 20:20:32,622 INFO : Inserting hCYP3A4pCWOri
22 Mar 2021 20:20:32,632 INFO : 13% Done
22 Mar 2021 20:20:32,666 INFO : 19% Done
22 Mar 2021 20:20:32,709 INFO : 28% Done
22 Mar 2021 20:20:32,756 INFO : 40% Done
22 Mar 2021 20:20:32,848 INFO : 50% Done
22 Mar 2021 20:20:32,896 DEBUG: Total peptides inserted: 5
22 Mar 2021 20:20:32,901 INFO : 53% Done
22 Mar 2021 20:20:32,907 INFO : Inserting sp|P00388|NCPR_RAT
22 Mar 2021 20:20:32,913 INFO : 56% Done
22 Mar 2021 20:20:32,981 INFO : 63% Done
22 Mar 2021 20:20:33,032 INFO : 74% Done
22 Mar 2021 20:20:33,091 INFO : 84% Done
22 Mar 2021 20:20:33,121 INFO : 98% Done
22 Mar 2021 20:20:33,186 DEBUG: Total peptides inserted: 5
22 Mar 2021 20:20:33,188 INFO : Done parsing Skyline document.
22 Mar 2021 20:20:33,330 INFO : Creating and populating temp tables for Proportion values
22 Mar 2021 20:20:33,345 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
22 Mar 2021 20:20:33,354 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
22 Mar 2021 20:20:33,358 INFO : Cleaning up temp tables
22 Mar 2021 20:20:33,908 INFO : Completed import of Skyline document from raloxifene-and-untreated-normalization-quant_2021-03-03_19-28-58.sky.zip
22 Mar 2021 20:20:33,914 INFO : 100% Done
22 Mar 2021 20:20:33,922 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/MacCoss%20-%20CYP3A4%20Raloxifene_c07ffacd-6db2-1039-9674-3013bb9b91fd/_temp__2021-03-22_20-14-45/export/xar/experiments_and_runs.xar.exploded/Run102998/raloxifene-and-untreated-normalization-quant_2021-03-03_19-28-58.sky.zip into the system
22 Mar 2021 20:20:33,978 INFO : Done importing xar
22 Mar 2021 20:20:33,985 INFO : Loading pages and webpart properties
22 Mar 2021 20:20:34,214 INFO : Done importing pages and webpart properties
22 Mar 2021 20:20:34,215 INFO : 
22 Mar 2021 20:20:34,215 INFO : Experiment import completed successfully.
22 Mar 2021 20:20:34,215 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
22 Mar 2021 20:20:34,322 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
22 Mar 2021 20:20:34,322 INFO : 
22 Mar 2021 20:20:34,322 INFO : Finishing up experiment copy.
22 Mar 2021 20:20:34,325 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
22 Mar 2021 20:20:34,329 INFO : Assigning a ProteomeXchange ID.
22 Mar 2021 20:20:35,202 INFO : Updating access URL to point to the new copy of the data.
22 Mar 2021 20:20:35,792 INFO : Setting the 'copied' timestamp and journalExperimentId on the JournalExperiment table.
22 Mar 2021 20:20:35,798 INFO : Removing copy permissions given to journal.
22 Mar 2021 20:20:35,816 INFO : Adding read permissions to all users that are folder admins in the source container.
22 Mar 2021 20:20:35,832 INFO : Setting the TargetedMS folder type to 'Experimental Data'
22 Mar 2021 20:20:35,847 INFO : Updating the 'Raw Data' tab configuration
22 Mar 2021 20:20:35,853 INFO : Updating dataFileUrls for run raloxifene-and-untreated-normalization-quant_2021-03-03_19-28-58.sky.zip; targetedms run ID 106362
22 Mar 2021 20:20:35,854 INFO : Updating dataFileUrl...
22 Mar 2021 20:20:35,854 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/MacCoss%20-%20CYP3A4%20Raloxifene_c07ffacd-6db2-1039-9674-3013bb9b91fd/_temp__2021-03-22_20-14-45/export/xar/experiments_and_runs.xar.exploded/Run102998/raloxifene-and-untreated-normalization-quant_2021-03-03_19-28-58/raloxifene-and-untreated-normalization-quant.skyd
22 Mar 2021 20:20:35,854 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/MacCoss%20-%20CYP3A4%20Raloxifene/@files/raloxifene-and-untreated-normalization-quant_2021-03-03_19-28-58/raloxifene-and-untreated-normalization-quant.skyd
22 Mar 2021 20:20:35,860 INFO : Updating dataFileUrl...
22 Mar 2021 20:20:35,860 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/MacCoss%20-%20CYP3A4%20Raloxifene_c07ffacd-6db2-1039-9674-3013bb9b91fd/_temp__2021-03-22_20-14-45/export/xar/experiments_and_runs.xar.exploded/Run102998/raloxifene-and-untreated-normalization-quant_2021-03-03_19-28-58.sky.zip
22 Mar 2021 20:20:35,860 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/MacCoss%20-%20CYP3A4%20Raloxifene/@files/raloxifene-and-untreated-normalization-quant_2021-03-03_19-28-58.sky.zip
22 Mar 2021 20:20:35,868 INFO : Updating dataFileUrls for run untreated-vs-raloxifene-treated-CYP3A4-471Da-modified-peptides_2021-03-14_16-52-12.sky.zip; targetedms run ID 106361
22 Mar 2021 20:20:35,869 INFO : Updating dataFileUrl...
22 Mar 2021 20:20:35,869 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/MacCoss%20-%20CYP3A4%20Raloxifene_c07ffacd-6db2-1039-9674-3013bb9b91fd/_temp__2021-03-22_20-14-45/export/xar/experiments_and_runs.xar.exploded/Run103638/untreated-vs-raloxifene-treated-CYP3A4-471Da-modified-peptides_2021-03-14_16-52-12/untreated-vs-raloxifene-treated-CYP3A4-471Da-modified-peptides.skyd
22 Mar 2021 20:20:35,869 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/MacCoss%20-%20CYP3A4%20Raloxifene/@files/untreated-vs-raloxifene-treated-CYP3A4-471Da-modified-peptides_2021-03-14_16-52-12/untreated-vs-raloxifene-treated-CYP3A4-471Da-modified-peptides.skyd
22 Mar 2021 20:20:35,873 INFO : Updating dataFileUrl...
22 Mar 2021 20:20:35,873 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/MacCoss%20-%20CYP3A4%20Raloxifene_c07ffacd-6db2-1039-9674-3013bb9b91fd/_temp__2021-03-22_20-14-45/export/xar/experiments_and_runs.xar.exploded/Run103638/untreated-vs-raloxifene-treated-CYP3A4-471Da-modified-peptides_2021-03-14_16-52-12.sky.zip
22 Mar 2021 20:20:35,873 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/MacCoss%20-%20CYP3A4%20Raloxifene/@files/untreated-vs-raloxifene-treated-CYP3A4-471Da-modified-peptides_2021-03-14_16-52-12.sky.zip
22 Mar 2021 20:20:35,878 INFO : Creating a reviewer account.
22 Mar 2021 20:20:36,437 INFO : Created reviewer with email: User panorama+reviewer16@proteinms.net
22 Mar 2021 20:20:36,452 INFO : Hiding the Data Pipeline tab.
22 Mar 2021 20:20:36,769 INFO : Emailing submitter.
22 Mar 2021 20:20:37,390 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'