17 Aug 2021 10:22:55,182 INFO : Copying experiment "Multisite proteome provides insights into the biology and prognostic markers for head and neck cancer" from folder /LNBio - Mas Lab/ArianeBusso/Projeto1_BuffyCoat-SalivaPellet_2019 to /Panorama Public/2021/LNBio Mas Lab - Projeto1_BuffyCoat-SalivaPellet_2019
17 Aug 2021 10:22:55,183 INFO : =======================================
17 Aug 2021 10:22:55,253 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
17 Aug 2021 10:22:55,253 INFO :
17 Aug 2021 10:22:55,254 INFO : Exporting experiment.
17 Aug 2021 10:37:16,086 INFO :
17 Aug 2021 10:37:16,086 INFO : Experiment export completed successfully.
17 Aug 2021 10:37:16,086 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
17 Aug 2021 10:37:16,136 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
17 Aug 2021 10:37:16,137 INFO :
17 Aug 2021 10:37:16,137 INFO : Importing experiment.
17 Aug 2021 10:37:16,143 INFO : Loading folder properties (folder type, settings and active modules)
17 Aug 2021 10:37:16,228 INFO : Done importing folder properties (folder type, settings and active modules)
17 Aug 2021 10:37:16,231 INFO : Loading etl definitions
17 Aug 2021 10:37:16,235 INFO : Loading wikis
17 Aug 2021 10:37:16,237 INFO : 0 wikis imported
17 Aug 2021 10:37:16,237 INFO : Done importing wikis
17 Aug 2021 10:37:16,237 INFO : Starting to copy files
17 Aug 2021 10:39:22,160 INFO : 37 files copied, now copying 27jun_Ariane_98_4955_LL.raw
17 Aug 2021 10:41:17,181 INFO : 51 files copied, now copying 20dez_Ariane_9_Buffy_22.raw
17 Aug 2021 10:43:25,965 INFO : 72 files copied, now copying 12jun_Ariane_PS19_2ug.raw
17 Aug 2021 10:45:10,375 INFO : 99 files copied, now copying msms.txt
17 Aug 2021 10:45:43,758 INFO : 101 files copied, now copying 06out19_Ariane_Sample27_PS26_Negative.raw.zip
17 Aug 2021 10:45:44,183 INFO : 126 files copied, now copying 12set2019_Sample24_Buffy45_Indetermined.raw.zip
17 Aug 2021 10:45:44,204 INFO : 145 files copied, now copying Linfocito.blib
17 Aug 2021 10:45:45,612 INFO : 153 files copied, now copying FINAL_Buffycoat_SIL_labelfree_19samples_1.skyd
17 Aug 2021 10:45:47,827 INFO : 161 files copied, now copying Linfocito.blib
17 Aug 2021 10:45:48,610 INFO : 168 files copied, now copying FINAL_Buffycoat_SIL_labelfree_19samples_2.skyd
17 Aug 2021 10:45:50,175 INFO : 176 files copied, now copying Macrofago.blib
17 Aug 2021 10:45:51,465 INFO : 183 files copied, now copying Macrofago.blib
17 Aug 2021 10:45:52,821 INFO : Copied 192 files
17 Aug 2021 10:45:52,821 INFO : Ensuring exp.data rows exist for imported files
17 Aug 2021 10:45:54,586 INFO : Starting Sample Type and Data Class import
17 Aug 2021 10:45:54,586 INFO : No types XAR file to process.
17 Aug 2021 10:45:54,586 INFO : Finished importing Sample Types and Data Classes
17 Aug 2021 10:45:54,589 INFO : Loading xar
17 Aug 2021 10:45:55,504 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9009:TargetedMS.ImportSkyZip'
17 Aug 2021 10:45:55,506 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9009:TargetedMS.ImportSkyZip.Core'
17 Aug 2021 10:45:55,509 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9009:TargetedMS.ImportSkyZip.Output'
17 Aug 2021 10:45:55,509 DEBUG: Protocol import complete
17 Aug 2021 10:45:55,510 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-9009:Multisite+proteome+provides+insights+into+the+biology+and+prognostic+markers+for+head+and+neck+cancer'
17 Aug 2021 10:45:55,510 DEBUG: Experiment/Run group import complete
17 Aug 2021 10:45:55,520 DEBUG: Protocol action set import complete
17 Aug 2021 10:45:55,534 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9009:TargetedMS.ImportSkyZip'
17 Aug 2021 10:45:55,544 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9009:4c3602e7-d74e-1039-937c-fea6ddf55d1e'
17 Aug 2021 10:45:55,549 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9009:4c3602ca-d74e-1039-937c-fea6ddf55d1e'
17 Aug 2021 10:45:55,549 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9009:TargetedMS.ImportSkyZip.Core'
17 Aug 2021 10:45:55,552 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9009:TargetedMS.ImportSkyZip.Output'
17 Aug 2021 10:45:55,553 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9009:4c360323-d74e-1039-937c-fea6ddf55d1e'
17 Aug 2021 10:45:55,561 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9009:TargetedMS.ImportSkyZip'
17 Aug 2021 10:45:55,566 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9009:701298d3-e18f-1039-a2b1-fea6ddf522ee'
17 Aug 2021 10:45:55,570 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9009:7012973a-e18f-1039-a2b1-fea6ddf522ee'
17 Aug 2021 10:45:55,570 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9009:TargetedMS.ImportSkyZip.Core'
17 Aug 2021 10:45:55,573 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9009:TargetedMS.ImportSkyZip.Output'
17 Aug 2021 10:45:55,574 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9009:701298ff-e18f-1039-a2b1-fea6ddf522ee'
17 Aug 2021 10:45:55,575 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/LNBio%20Mas%20Lab%20-%20Projeto1_BuffyCoat-SalivaPellet_2019_8ed594aa-e1ad-1039-a2b1-fea6ddf522ee/_temp__2021-08-17_10-22-54/export/xar/experiments_and_runs.xar.exploded/Run115011/FINAL_Pelletsaliva_SIL_labelfree_25samples_1_2021-08-04_09-37-03/FINAL_Pelletsaliva_SIL_labelfree_25samples_1.skyd into the system
17 Aug 2021 10:45:55,576 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/LNBio%20Mas%20Lab%20-%20Projeto1_BuffyCoat-SalivaPellet_2019_8ed594aa-e1ad-1039-a2b1-fea6ddf522ee/_temp__2021-08-17_10-22-54/export/xar/experiments_and_runs.xar.exploded/Run115011/FINAL_Pelletsaliva_SIL_labelfree_25samples_1_2021-08-04_09-37-03/FINAL_Pelletsaliva_SIL_labelfree_25samples_1.skyd into the system
17 Aug 2021 10:45:55,576 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/LNBio%20Mas%20Lab%20-%20Projeto1_BuffyCoat-SalivaPellet_2019_8ed594aa-e1ad-1039-a2b1-fea6ddf522ee/_temp__2021-08-17_10-22-54/export/xar/experiments_and_runs.xar.exploded/Run115011/FINAL_Pelletsaliva_SIL_labelfree_25samples_1_2021-08-04_09-37-03.sky.zip into the system
17 Aug 2021 10:45:55,578 INFO : Starting import from FINAL_Pelletsaliva_SIL_labelfree_25samples_1_2021-08-04_09-37-03.sky.zip
17 Aug 2021 10:45:55,583 INFO : Starting to import Skyline document from FINAL_Pelletsaliva_SIL_labelfree_25samples_1_2021-08-04_09-37-03.sky.zip
17 Aug 2021 10:45:55,585 INFO : Expanding Linfocito.blib
17 Aug 2021 10:45:55,757 INFO : Expanding Saliva_pellet.blib
17 Aug 2021 10:45:55,942 INFO : Expanding Ari_FFPE.blib
17 Aug 2021 10:45:56,005 INFO : Expanding BuffyCoat_all.blib
17 Aug 2021 10:45:56,098 INFO : Expanding FINAL_Pelletsaliva_SIL_labelfree_25samples_1.skyd
17 Aug 2021 10:45:56,132 INFO : Expanding FINAL_Pelletsaliva_SIL_labelfree_25samples_1.sky.view
17 Aug 2021 10:45:56,132 INFO : Expanding FINAL_Pelletsaliva_SIL_labelfree_25samples_1.sky
17 Aug 2021 10:45:56,154 INFO : 2% Done
17 Aug 2021 10:45:56,219 DEBUG: Starting to load chromatogram headers
17 Aug 2021 10:45:56,224 DEBUG: Done loading chromatogram headers
17 Aug 2021 10:45:56,345 INFO : Inserting sp|P01730|CD4_HUMAN
17 Aug 2021 10:45:56,361 INFO : 4% Done
17 Aug 2021 10:45:56,400 DEBUG: Total peptides inserted: 1
17 Aug 2021 10:45:56,403 INFO : Inserting sp|P11215|ITAM_HUMAN
17 Aug 2021 10:45:56,410 INFO : 6% Done
17 Aug 2021 10:45:56,440 INFO : 9% Done
17 Aug 2021 10:45:56,471 INFO : 11% Done
17 Aug 2021 10:45:56,499 DEBUG: Total peptides inserted: 3
17 Aug 2021 10:45:56,505 INFO : Inserting sp|P31997|CEAM8_HUMAN
17 Aug 2021 10:45:56,512 INFO : 14% Done
17 Aug 2021 10:45:56,542 DEBUG: Total peptides inserted: 1
17 Aug 2021 10:45:56,546 INFO : Inserting sp|P08571|CD14_HUMAN
17 Aug 2021 10:45:56,552 INFO : 16% Done
17 Aug 2021 10:45:56,585 INFO : 18% Done
17 Aug 2021 10:45:56,618 INFO : 21% Done
17 Aug 2021 10:45:56,641 DEBUG: Total peptides inserted: 3
17 Aug 2021 10:45:56,644 INFO : Inserting sp|P08575|PTPRC_HUMAN
17 Aug 2021 10:45:56,651 INFO : 24% Done
17 Aug 2021 10:45:56,689 INFO : 26% Done
17 Aug 2021 10:45:56,715 DEBUG: Total peptides inserted: 2
17 Aug 2021 10:45:56,718 INFO : Inserting sp|P08637|FCG3A_HUMAN
17 Aug 2021 10:45:56,723 INFO : 30% Done
17 Aug 2021 10:45:56,753 DEBUG: Total peptides inserted: 1
17 Aug 2021 10:45:56,758 INFO : Inserting sp|P01732|CD8A_HUMAN
17 Aug 2021 10:45:56,765 INFO : 31% Done
17 Aug 2021 10:45:56,796 DEBUG: Total peptides inserted: 1
17 Aug 2021 10:45:56,799 INFO : Inserting sp|P15391|CD19_HUMAN
17 Aug 2021 10:45:56,806 INFO : 34% Done
17 Aug 2021 10:45:56,844 INFO : 36% Done
17 Aug 2021 10:45:56,873 DEBUG: Total peptides inserted: 2
17 Aug 2021 10:45:56,877 INFO : Inserting sp|P07766|CD3E_HUMAN
17 Aug 2021 10:45:56,884 INFO : 38% Done
17 Aug 2021 10:45:56,914 DEBUG: Total peptides inserted: 1
17 Aug 2021 10:45:56,917 INFO : Inserting sp|Q13243|SRSF5_HUMAN
17 Aug 2021 10:45:56,925 INFO : 42% Done
17 Aug 2021 10:45:56,999 INFO : 46% Done
17 Aug 2021 10:45:57,062 DEBUG: Total peptides inserted: 2
17 Aug 2021 10:45:57,068 INFO : Inserting sp|Q13595|TRA2A_HUMAN
17 Aug 2021 10:45:57,077 INFO : 50% Done
17 Aug 2021 10:45:57,141 INFO : 54% Done
17 Aug 2021 10:45:57,205 DEBUG: Total peptides inserted: 2
17 Aug 2021 10:45:57,208 INFO : Inserting sp|Q07955|SRSF1_HUMAN
17 Aug 2021 10:45:57,215 INFO : 58% Done
17 Aug 2021 10:45:57,282 INFO : 62% Done
17 Aug 2021 10:45:57,338 DEBUG: Total peptides inserted: 2
17 Aug 2021 10:45:57,343 INFO : Inserting sp|P84103|SRSF3_HUMAN
17 Aug 2021 10:45:57,351 INFO : 66% Done
17 Aug 2021 10:45:57,416 INFO : 70% Done
17 Aug 2021 10:45:57,473 DEBUG: Total peptides inserted: 2
17 Aug 2021 10:45:57,476 INFO : Inserting sp|Q9NNX6|CD209_HUMAN
17 Aug 2021 10:45:57,483 INFO : 74% Done
17 Aug 2021 10:45:57,540 DEBUG: Total peptides inserted: 1
17 Aug 2021 10:45:57,541 INFO : Inserting iRT
17 Aug 2021 10:45:57,545 INFO : 75% Done
17 Aug 2021 10:45:57,565 INFO : 77% Done
17 Aug 2021 10:45:57,586 INFO : 78% Done
17 Aug 2021 10:45:57,606 INFO : 80% Done
17 Aug 2021 10:45:57,625 DEBUG: Total peptides inserted: 4
17 Aug 2021 10:45:57,627 INFO : Done parsing Skyline document.
17 Aug 2021 10:45:57,630 INFO : Calculating fold changes
17 Aug 2021 10:45:57,630 DEBUG: Calculating fold change for group comparison N0 vs N+, 1 of 1
17 Aug 2021 10:45:58,090 INFO : 98% Done
17 Aug 2021 10:45:58,090 INFO : Done calculating fold changes.
17 Aug 2021 10:45:58,092 INFO : Creating and populating temp tables for Proportion values
17 Aug 2021 10:45:58,111 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
17 Aug 2021 10:45:58,153 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
17 Aug 2021 10:45:58,174 INFO : Cleaning up temp tables
17 Aug 2021 10:45:58,420 INFO : Completed import of Skyline document from FINAL_Pelletsaliva_SIL_labelfree_25samples_1_2021-08-04_09-37-03.sky.zip
17 Aug 2021 10:45:58,423 INFO : 100% Done
17 Aug 2021 10:45:58,429 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/LNBio%20Mas%20Lab%20-%20Projeto1_BuffyCoat-SalivaPellet_2019_8ed594aa-e1ad-1039-a2b1-fea6ddf522ee/_temp__2021-08-17_10-22-54/export/xar/experiments_and_runs.xar.exploded/Run115011/FINAL_Pelletsaliva_SIL_labelfree_25samples_1_2021-08-04_09-37-03.sky.zip into the system
17 Aug 2021 10:45:58,429 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/LNBio%20Mas%20Lab%20-%20Projeto1_BuffyCoat-SalivaPellet_2019_8ed594aa-e1ad-1039-a2b1-fea6ddf522ee/_temp__2021-08-17_10-22-54/export/xar/experiments_and_runs.xar.exploded/Run115725/FINAL_Buffycoat_SIL_labelfree_19samples_4_2021-08-17_10-49-18/FINAL_Buffycoat_SIL_labelfree_19samples_4.skyd into the system
17 Aug 2021 10:45:58,429 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/LNBio%20Mas%20Lab%20-%20Projeto1_BuffyCoat-SalivaPellet_2019_8ed594aa-e1ad-1039-a2b1-fea6ddf522ee/_temp__2021-08-17_10-22-54/export/xar/experiments_and_runs.xar.exploded/Run115725/FINAL_Buffycoat_SIL_labelfree_19samples_4_2021-08-17_10-49-18/FINAL_Buffycoat_SIL_labelfree_19samples_4.skyd into the system
17 Aug 2021 10:45:58,429 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/LNBio%20Mas%20Lab%20-%20Projeto1_BuffyCoat-SalivaPellet_2019_8ed594aa-e1ad-1039-a2b1-fea6ddf522ee/_temp__2021-08-17_10-22-54/export/xar/experiments_and_runs.xar.exploded/Run115725/FINAL_Buffycoat_SIL_labelfree_19samples_4_2021-08-17_10-49-18.sky.zip into the system
17 Aug 2021 10:45:58,430 INFO : Starting import from FINAL_Buffycoat_SIL_labelfree_19samples_4_2021-08-17_10-49-18.sky.zip
17 Aug 2021 10:45:58,433 INFO : Starting to import Skyline document from FINAL_Buffycoat_SIL_labelfree_19samples_4_2021-08-17_10-49-18.sky.zip
17 Aug 2021 10:45:58,435 INFO : Expanding HUMAN SWISSPROT.protdb
17 Aug 2021 10:45:59,381 INFO : Expanding Linfocito.blib
17 Aug 2021 10:45:59,554 INFO : Expanding Saliva_pellet.blib
17 Aug 2021 10:45:59,749 INFO : Expanding Ari_FFPE.blib
17 Aug 2021 10:45:59,813 INFO : Expanding BuffyCoat_all.blib
17 Aug 2021 10:45:59,903 INFO : Expanding FINAL_Buffycoat_SIL_labelfree_19samples_4.skyd
17 Aug 2021 10:45:59,950 INFO : Expanding FINAL_Buffycoat_SIL_labelfree_19samples_4.sky.view
17 Aug 2021 10:45:59,951 INFO : Expanding FINAL_Buffycoat_SIL_labelfree_19samples_4.sky
17 Aug 2021 10:45:59,963 INFO : 2% Done
17 Aug 2021 10:46:00,026 DEBUG: Starting to load chromatogram headers
17 Aug 2021 10:46:00,031 DEBUG: Done loading chromatogram headers
17 Aug 2021 10:46:00,106 INFO : Inserting sp|Q13243|SRSF5_HUMAN
17 Aug 2021 10:46:00,113 INFO : 6% Done
17 Aug 2021 10:46:00,166 INFO : 10% Done
17 Aug 2021 10:46:00,210 DEBUG: Total peptides inserted: 2
17 Aug 2021 10:46:00,213 INFO : Inserting sp|Q13595|TRA2A_HUMAN
17 Aug 2021 10:46:00,219 INFO : 14% Done
17 Aug 2021 10:46:00,267 INFO : 17% Done
17 Aug 2021 10:46:00,311 DEBUG: Total peptides inserted: 2
17 Aug 2021 10:46:00,313 INFO : 18% Done
17 Aug 2021 10:46:00,316 INFO : Inserting sp|Q07955|SRSF1_HUMAN
17 Aug 2021 10:46:00,321 INFO : 21% Done
17 Aug 2021 10:46:00,370 INFO : 25% Done
17 Aug 2021 10:46:00,417 DEBUG: Total peptides inserted: 2
17 Aug 2021 10:46:00,420 INFO : Inserting sp|P84103|SRSF3_HUMAN
17 Aug 2021 10:46:00,426 INFO : 29% Done
17 Aug 2021 10:46:00,475 INFO : 32% Done
17 Aug 2021 10:46:00,514 DEBUG: Total peptides inserted: 2
17 Aug 2021 10:46:00,520 INFO : Inserting sp|Q9NNX6|CD209_HUMAN
17 Aug 2021 10:46:00,525 INFO : 35% Done
17 Aug 2021 10:46:00,567 DEBUG: Total peptides inserted: 1
17 Aug 2021 10:46:00,572 INFO : Inserting sp|P01730|CD4_HUMAN
17 Aug 2021 10:46:00,579 INFO : 38% Done
17 Aug 2021 10:46:00,614 DEBUG: Total peptides inserted: 1
17 Aug 2021 10:46:00,621 INFO : Inserting sp|P11215|ITAM_HUMAN
17 Aug 2021 10:46:00,626 INFO : 41% Done
17 Aug 2021 10:46:00,652 INFO : 43% Done
17 Aug 2021 10:46:00,676 INFO : 46% Done
17 Aug 2021 10:46:00,703 DEBUG: Total peptides inserted: 3
17 Aug 2021 10:46:00,706 INFO : Inserting sp|P31997|CEAM8_HUMAN
17 Aug 2021 10:46:00,712 INFO : 48% Done
17 Aug 2021 10:46:00,740 DEBUG: Total peptides inserted: 1
17 Aug 2021 10:46:00,744 INFO : Inserting sp|P08571|CD14_HUMAN
17 Aug 2021 10:46:00,753 INFO : 50% Done
17 Aug 2021 10:46:00,777 INFO : 53% Done
17 Aug 2021 10:46:00,801 INFO : 55% Done
17 Aug 2021 10:46:00,820 DEBUG: Total peptides inserted: 3
17 Aug 2021 10:46:00,823 INFO : Inserting sp|P08575|PTPRC_HUMAN
17 Aug 2021 10:46:00,828 INFO : 58% Done
17 Aug 2021 10:46:00,854 INFO : 61% Done
17 Aug 2021 10:46:00,875 DEBUG: Total peptides inserted: 2
17 Aug 2021 10:46:00,878 INFO : Inserting sp|P08637|FCG3A_HUMAN
17 Aug 2021 10:46:00,882 INFO : 64% Done
17 Aug 2021 10:46:00,902 DEBUG: Total peptides inserted: 1
17 Aug 2021 10:46:00,905 INFO : Inserting sp|P01732|CD8A_HUMAN
17 Aug 2021 10:46:00,909 INFO : 66% Done
17 Aug 2021 10:46:00,929 DEBUG: Total peptides inserted: 1
17 Aug 2021 10:46:00,933 INFO : Inserting sp|P15391|CD19_HUMAN
17 Aug 2021 10:46:00,941 INFO : 69% Done
17 Aug 2021 10:46:00,971 INFO : 71% Done
17 Aug 2021 10:46:00,991 DEBUG: Total peptides inserted: 2
17 Aug 2021 10:46:00,995 INFO : Inserting sp|P07766|CD3E_HUMAN
17 Aug 2021 10:46:01,002 INFO : 74% Done
17 Aug 2021 10:46:01,026 DEBUG: Total peptides inserted: 1
17 Aug 2021 10:46:01,027 INFO : Inserting iRT
17 Aug 2021 10:46:01,031 INFO : 75% Done
17 Aug 2021 10:46:01,049 INFO : 77% Done
17 Aug 2021 10:46:01,065 INFO : 78% Done
17 Aug 2021 10:46:01,082 INFO : 80% Done
17 Aug 2021 10:46:01,097 DEBUG: Total peptides inserted: 4
17 Aug 2021 10:46:01,098 INFO : Done parsing Skyline document.
17 Aug 2021 10:46:01,101 INFO : Calculating fold changes
17 Aug 2021 10:46:01,101 DEBUG: Calculating fold change for group comparison N0 vs N+, 1 of 1
17 Aug 2021 10:46:01,512 INFO : 98% Done
17 Aug 2021 10:46:01,512 INFO : Done calculating fold changes.
17 Aug 2021 10:46:01,513 INFO : Creating and populating temp tables for Proportion values
17 Aug 2021 10:46:01,527 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
17 Aug 2021 10:46:01,555 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
17 Aug 2021 10:46:01,570 INFO : Cleaning up temp tables
17 Aug 2021 10:46:01,804 INFO : Completed import of Skyline document from FINAL_Buffycoat_SIL_labelfree_19samples_4_2021-08-17_10-49-18.sky.zip
17 Aug 2021 10:46:01,807 INFO : 100% Done
17 Aug 2021 10:46:01,811 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/LNBio%20Mas%20Lab%20-%20Projeto1_BuffyCoat-SalivaPellet_2019_8ed594aa-e1ad-1039-a2b1-fea6ddf522ee/_temp__2021-08-17_10-22-54/export/xar/experiments_and_runs.xar.exploded/Run115725/FINAL_Buffycoat_SIL_labelfree_19samples_4_2021-08-17_10-49-18.sky.zip into the system
17 Aug 2021 10:46:01,824 INFO : Done importing xar
17 Aug 2021 10:46:01,827 INFO : Loading pages and webpart properties
17 Aug 2021 10:46:01,911 INFO : Done importing pages and webpart properties
17 Aug 2021 10:46:01,912 INFO :
17 Aug 2021 10:46:01,912 INFO : Experiment import completed successfully.
17 Aug 2021 10:46:01,912 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
17 Aug 2021 10:46:01,948 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
17 Aug 2021 10:46:01,948 INFO :
17 Aug 2021 10:46:01,948 INFO : Finishing up experiment copy.
17 Aug 2021 10:46:01,950 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
17 Aug 2021 10:46:01,953 INFO : Assigning a ProteomeXchange ID.
17 Aug 2021 10:46:02,171 INFO : Assigning a DOI.
17 Aug 2021 10:46:03,286 INFO : Assigned DOI: 10.6069/7795-a573
17 Aug 2021 10:46:03,290 INFO : Updating access URL to point to the new copy of the data.
17 Aug 2021 10:46:03,297 INFO : Setting the 'copied' timestamp and journalExperimentId on the JournalExperiment table.
17 Aug 2021 10:46:03,298 INFO : Removing copy permissions given to journal.
17 Aug 2021 10:46:03,314 INFO : Adding read permissions to all users that are folder admins in the source container.
17 Aug 2021 10:46:03,326 INFO : Setting the TargetedMS folder type to 'Experimental Data'
17 Aug 2021 10:46:03,335 INFO : Updating the 'Raw Data' tab configuration
17 Aug 2021 10:46:03,338 INFO : Updating dataFileUrls for run FINAL_Pelletsaliva_SIL_labelfree_25samples_1_2021-08-04_09-37-03.sky.zip; targetedms run ID 118257
17 Aug 2021 10:46:03,338 INFO : Updating dataFileUrl...
17 Aug 2021 10:46:03,338 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/LNBio%20Mas%20Lab%20-%20Projeto1_BuffyCoat-SalivaPellet_2019_8ed594aa-e1ad-1039-a2b1-fea6ddf522ee/_temp__2021-08-17_10-22-54/export/xar/experiments_and_runs.xar.exploded/Run115011/FINAL_Pelletsaliva_SIL_labelfree_25samples_1_2021-08-04_09-37-03/FINAL_Pelletsaliva_SIL_labelfree_25samples_1.skyd
17 Aug 2021 10:46:03,338 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/LNBio%20Mas%20Lab%20-%20Projeto1_BuffyCoat-SalivaPellet_2019/@files/FINAL_Pelletsaliva_SIL_labelfree_25samples_1_2021-08-04_09-37-03/FINAL_Pelletsaliva_SIL_labelfree_25samples_1.skyd
17 Aug 2021 10:46:03,341 INFO : Updating dataFileUrl...
17 Aug 2021 10:46:03,341 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/LNBio%20Mas%20Lab%20-%20Projeto1_BuffyCoat-SalivaPellet_2019_8ed594aa-e1ad-1039-a2b1-fea6ddf522ee/_temp__2021-08-17_10-22-54/export/xar/experiments_and_runs.xar.exploded/Run115011/FINAL_Pelletsaliva_SIL_labelfree_25samples_1_2021-08-04_09-37-03.sky.zip
17 Aug 2021 10:46:03,341 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/LNBio%20Mas%20Lab%20-%20Projeto1_BuffyCoat-SalivaPellet_2019/@files/FINAL_Pelletsaliva_SIL_labelfree_25samples_1_2021-08-04_09-37-03.sky.zip
17 Aug 2021 10:46:03,346 INFO : Updating dataFileUrls for run FINAL_Buffycoat_SIL_labelfree_19samples_4_2021-08-17_10-49-18.sky.zip; targetedms run ID 118258
17 Aug 2021 10:46:03,346 INFO : Updating dataFileUrl...
17 Aug 2021 10:46:03,346 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/LNBio%20Mas%20Lab%20-%20Projeto1_BuffyCoat-SalivaPellet_2019_8ed594aa-e1ad-1039-a2b1-fea6ddf522ee/_temp__2021-08-17_10-22-54/export/xar/experiments_and_runs.xar.exploded/Run115725/FINAL_Buffycoat_SIL_labelfree_19samples_4_2021-08-17_10-49-18/FINAL_Buffycoat_SIL_labelfree_19samples_4.skyd
17 Aug 2021 10:46:03,346 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/LNBio%20Mas%20Lab%20-%20Projeto1_BuffyCoat-SalivaPellet_2019/@files/FINAL_Buffycoat_SIL_labelfree_19samples_4_2021-08-17_10-49-18/FINAL_Buffycoat_SIL_labelfree_19samples_4.skyd
17 Aug 2021 10:46:03,348 INFO : Updating dataFileUrl...
17 Aug 2021 10:46:03,348 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/LNBio%20Mas%20Lab%20-%20Projeto1_BuffyCoat-SalivaPellet_2019_8ed594aa-e1ad-1039-a2b1-fea6ddf522ee/_temp__2021-08-17_10-22-54/export/xar/experiments_and_runs.xar.exploded/Run115725/FINAL_Buffycoat_SIL_labelfree_19samples_4_2021-08-17_10-49-18.sky.zip
17 Aug 2021 10:46:03,348 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/LNBio%20Mas%20Lab%20-%20Projeto1_BuffyCoat-SalivaPellet_2019/@files/FINAL_Buffycoat_SIL_labelfree_19samples_4_2021-08-17_10-49-18.sky.zip
17 Aug 2021 10:46:03,351 INFO : Creating a reviewer account.
17 Aug 2021 10:46:03,577 INFO : Created reviewer with email: User panorama+reviewer57@proteinms.net
17 Aug 2021 10:46:03,586 INFO : Hiding the Data Pipeline tab.
17 Aug 2021 10:46:03,676 INFO : Emailing submitter.
17 Aug 2021 10:46:03,816 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'