04 Mar 2020 13:13:19,918 INFO : Copying experiment "Targeted FLNc S2233 S2236 phosphorylation assay" from folder /University of Freiburg - Warscheid Lab/Z-disc/Targeted FLNc S2233 S2236 phosphorylation assay to /Panorama Public/2020/Warscheid Lab - Targeted FLNc S2233 S2236 phosphorylation assay
04 Mar 2020 13:13:19,918 INFO : =======================================
04 Mar 2020 13:13:20,310 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
04 Mar 2020 13:13:20,310 INFO :
04 Mar 2020 13:13:20,310 INFO : Exporting experiment.
04 Mar 2020 13:14:10,727 INFO :
04 Mar 2020 13:14:10,728 INFO : Experiment export completed successfully.
04 Mar 2020 13:14:10,728 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
04 Mar 2020 13:14:11,032 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
04 Mar 2020 13:14:11,032 INFO :
04 Mar 2020 13:14:11,032 INFO : Importing experiment.
04 Mar 2020 13:14:11,102 INFO : Loading folder properties (folder type, settings and active modules)
04 Mar 2020 13:14:11,240 INFO : Done importing folder properties (folder type, settings and active modules)
04 Mar 2020 13:14:11,247 INFO : Loading etl definitions
04 Mar 2020 13:14:11,253 INFO : Loading wikis
04 Mar 2020 13:14:12,057 INFO : 5 wikis imported
04 Mar 2020 13:14:12,057 INFO : Done importing wikis
04 Mar 2020 13:17:05,066 INFO : Loading xar
04 Mar 2020 13:17:06,621 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-6592:TargetedMS.ImportSkyZip'
04 Mar 2020 13:17:06,625 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-6592:TargetedMS.ImportSkyZip.Core'
04 Mar 2020 13:17:06,630 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-6592:TargetedMS.ImportSkyZip.Output'
04 Mar 2020 13:17:06,631 DEBUG: Protocol import complete
04 Mar 2020 13:17:06,781 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-6592:Targeted+FLNc+S2233+S2236+phosphorylation+assay'
04 Mar 2020 13:17:06,782 DEBUG: Experiment/Run group import complete
04 Mar 2020 13:17:06,844 DEBUG: Protocol action set import complete
04 Mar 2020 13:17:06,891 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6592:TargetedMS.ImportSkyZip'
04 Mar 2020 13:17:07,038 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6592:97e1d523-fd7c-1037-94ab-3013bb9b2866'
04 Mar 2020 13:17:07,049 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6592:c35b3e78-fdaa-1037-94ab-3013bb9b2866'
04 Mar 2020 13:17:07,050 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6592:TargetedMS.ImportSkyZip.Core'
04 Mar 2020 13:17:07,058 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6592:TargetedMS.ImportSkyZip.Output'
04 Mar 2020 13:17:07,059 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6592:c35b3ec1-fdaa-1037-94ab-3013bb9b2866'
04 Mar 2020 13:17:07,086 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6592:TargetedMS.ImportSkyZip'
04 Mar 2020 13:17:07,100 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6592:07939c15-ff5f-1035-940b-3013bb9b1c47'
04 Mar 2020 13:17:07,100 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6592:TargetedMS.ImportSkyZip.Core'
04 Mar 2020 13:17:07,105 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6592:TargetedMS.ImportSkyZip.Output'
04 Mar 2020 13:17:07,106 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6592:07939c6e-ff5f-1035-940b-3013bb9b1c47'
04 Mar 2020 13:17:07,129 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6592:TargetedMS.ImportSkyZip'
04 Mar 2020 13:17:07,160 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6592:4b0eec6d-feb7-1035-940b-3013bb9b1c47'
04 Mar 2020 13:17:07,160 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6592:TargetedMS.ImportSkyZip.Core'
04 Mar 2020 13:17:07,165 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6592:TargetedMS.ImportSkyZip.Output'
04 Mar 2020 13:17:07,166 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6592:4b0eeca1-feb7-1035-940b-3013bb9b1c47'
04 Mar 2020 13:17:07,169 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Warscheid%20Lab%20-%20Targeted%20FLNc%20S2233%20S2236%20phosphorylation%20assay_dfd44896-4088-1038-b44d-3013bb9b1bc1/_temp__2020-03-04_13-13-19/export/xar/experiments_and_runs.xar.exploded/Run78287/PRMassay_FLNc+phosphostandard_pepmap.sky.zip into the system
04 Mar 2020 13:17:07,173 INFO : Starting import from PRMassay_FLNc+phosphostandard_pepmap.sky.zip
04 Mar 2020 13:17:07,182 INFO : Starting to import Skyline document from PRMassay_FLNc+phosphostandard_pepmap.sky.zip
04 Mar 2020 13:17:07,188 INFO : Expanding PRMassay_FLNc+phosphostandard_pepmap.blib
04 Mar 2020 13:17:07,211 INFO : Expanding PRMassay_FLNc+phosphostandard_pepmap.redundant.blib
04 Mar 2020 13:17:08,598 INFO : Expanding PRMassay_FLNc+phosphostandard.blib
04 Mar 2020 13:17:08,608 INFO : Expanding PRMassay_FLNc+phosphostandard.redundant.blib
04 Mar 2020 13:17:08,954 INFO : Expanding PRMassay_FLNc+phosphostandard_pepmap.skyd
04 Mar 2020 13:17:09,018 INFO : Expanding PRMassay_FLNc+phosphostandard_pepmap.sky.view
04 Mar 2020 13:17:09,019 INFO : Expanding PRMassay_FLNc+phosphostandard_pepmap.sky
04 Mar 2020 13:17:09,030 INFO : 7% Done
04 Mar 2020 13:17:09,581 INFO : Inserting sp|Q9UKE5|TNIK_HUMAN
04 Mar 2020 13:17:09,661 INFO : 15% Done
04 Mar 2020 13:17:09,839 DEBUG: Total peptides inserted: 1
04 Mar 2020 13:17:09,935 INFO : Inserting sp|Q86YS7|C2CD5_HUMAN
04 Mar 2020 13:17:09,978 INFO : 21% Done
04 Mar 2020 13:17:10,109 DEBUG: Total peptides inserted: 1
04 Mar 2020 13:17:10,110 INFO : Inserting hFLNc
04 Mar 2020 13:17:10,137 INFO : 32% Done
04 Mar 2020 13:17:10,539 INFO : 38% Done
04 Mar 2020 13:17:10,663 INFO : 43% Done
04 Mar 2020 13:17:10,783 INFO : 50% Done
04 Mar 2020 13:17:10,903 DEBUG: Total peptides inserted: 4
04 Mar 2020 13:17:11,006 INFO : Inserting sp|Q13554|KCC2B_HUMAN
04 Mar 2020 13:17:11,079 INFO : 56% Done
04 Mar 2020 13:17:11,220 DEBUG: Total peptides inserted: 1
04 Mar 2020 13:17:11,323 INFO : Inserting sp|P08631|HCK_HUMAN
04 Mar 2020 13:17:11,369 INFO : 62% Done
04 Mar 2020 13:17:11,517 DEBUG: Total peptides inserted: 1
04 Mar 2020 13:17:11,603 INFO : Inserting sp|P06241|FYN_HUMAN
04 Mar 2020 13:17:11,645 INFO : 69% Done
04 Mar 2020 13:17:11,759 DEBUG: Total peptides inserted: 1
04 Mar 2020 13:17:11,831 INFO : Inserting sp|P50613|CDK7_HUMAN
04 Mar 2020 13:17:11,860 INFO : 74% Done
04 Mar 2020 13:17:11,970 DEBUG: Total peptides inserted: 1
04 Mar 2020 13:17:12,064 INFO : Inserting sp|P16083|NQO2_HUMAN
04 Mar 2020 13:17:12,116 INFO : 86% Done
04 Mar 2020 13:17:12,299 DEBUG: Total peptides inserted: 1
04 Mar 2020 13:17:12,402 INFO : Inserting sp|A7MCY6|TBKB1_HUMAN
04 Mar 2020 13:17:12,438 INFO : 98% Done
04 Mar 2020 13:17:12,623 DEBUG: Total peptides inserted: 1
04 Mar 2020 13:17:12,623 INFO : Done parsing Skyline document.
04 Mar 2020 13:17:12,628 INFO : Copied PRMassay_FLNc+phosphostandard_pepmap.skyd to cloud storage.
04 Mar 2020 13:17:12,633 INFO : Copied PRMassay_FLNc+phosphostandard_pepmap.blib to cloud storage.
04 Mar 2020 13:17:12,634 INFO : Copied PRMassay_FLNc+phosphostandard_pepmap.redundant.blib to cloud storage.
04 Mar 2020 13:17:12,634 INFO : Copied PRMassay_FLNc+phosphostandard.blib to cloud storage.
04 Mar 2020 13:17:12,634 INFO : Copied PRMassay_FLNc+phosphostandard.redundant.blib to cloud storage.
04 Mar 2020 13:17:16,786 INFO : Completed import of Skyline document from PRMassay_FLNc+phosphostandard_pepmap.sky.zip
04 Mar 2020 13:17:16,788 INFO : 100% Done
04 Mar 2020 13:17:16,797 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Warscheid%20Lab%20-%20Targeted%20FLNc%20S2233%20S2236%20phosphorylation%20assay_dfd44896-4088-1038-b44d-3013bb9b1bc1/_temp__2020-03-04_13-13-19/export/xar/experiments_and_runs.xar.exploded/Run78287/PRMassay_FLNc+phosphostandard_pepmap.sky.zip into the system
04 Mar 2020 13:17:16,797 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Warscheid%20Lab%20-%20Targeted%20FLNc%20S2233%20S2236%20phosphorylation%20assay_dfd44896-4088-1038-b44d-3013bb9b1bc1/_temp__2020-03-04_13-13-19/export/xar/experiments_and_runs.xar.exploded/Run78287/PRMassay_FLNc+phosphostandard_pepmap/PRMassay_FLNc+phosphostandard_pepmap.skyd into the system
04 Mar 2020 13:17:16,798 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Warscheid%20Lab%20-%20Targeted%20FLNc%20S2233%20S2236%20phosphorylation%20assay_dfd44896-4088-1038-b44d-3013bb9b1bc1/_temp__2020-03-04_13-13-19/export/xar/experiments_and_runs.xar.exploded/Run78287/PRMassay_FLNc+phosphostandard_pepmap/PRMassay_FLNc+phosphostandard_pepmap.skyd into the system
04 Mar 2020 13:17:16,798 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Warscheid%20Lab%20-%20Targeted%20FLNc%20S2233%20S2236%20phosphorylation%20assay_dfd44896-4088-1038-b44d-3013bb9b1bc1/_temp__2020-03-04_13-13-19/export/xar/experiments_and_runs.xar.exploded/Run28030/PRMassay_FLNc+phosphostandard_2018-03-01_11-29-51.sky.zip into the system
04 Mar 2020 13:17:16,800 INFO : Starting import from PRMassay_FLNc+phosphostandard_2018-03-01_11-29-51.sky.zip
04 Mar 2020 13:17:16,806 INFO : Starting to import Skyline document from PRMassay_FLNc+phosphostandard_2018-03-01_11-29-51.sky.zip
04 Mar 2020 13:17:16,806 INFO : Expanding PRMassay_FLNc+phosphostandard.blib
04 Mar 2020 13:17:16,808 INFO : Expanding PRMassay_FLNc+phosphostandard.redundant.blib
04 Mar 2020 13:17:16,852 INFO : Expanding PRMassay_FLNc+phosphostandard.skyd
04 Mar 2020 13:17:17,349 INFO : Expanding PRMassay_FLNc+phosphostandard.sky.view
04 Mar 2020 13:17:17,350 INFO : Expanding PRMassay_FLNc+phosphostandard.sky
04 Mar 2020 13:17:17,367 INFO : 8% Done
04 Mar 2020 13:17:17,651 INFO : Inserting sp|Q9UKE5|TNIK_HUMAN
04 Mar 2020 13:17:17,660 INFO : 16% Done
04 Mar 2020 13:17:17,782 DEBUG: Total peptides inserted: 1
04 Mar 2020 13:17:17,792 INFO : Inserting sp|Q86YS7|C2CD5_HUMAN
04 Mar 2020 13:17:17,798 INFO : 21% Done
04 Mar 2020 13:17:17,951 DEBUG: Total peptides inserted: 1
04 Mar 2020 13:17:17,951 INFO : Inserting hFLNc
04 Mar 2020 13:17:17,957 INFO : 24% Done
04 Mar 2020 13:17:18,089 INFO : 34% Done
04 Mar 2020 13:17:18,235 INFO : 41% Done
04 Mar 2020 13:17:18,295 INFO : 47% Done
04 Mar 2020 13:17:18,359 INFO : 52% Done
04 Mar 2020 13:17:18,415 DEBUG: Total peptides inserted: 5
04 Mar 2020 13:17:18,420 INFO : Inserting sp|Q13554|KCC2B_HUMAN
04 Mar 2020 13:17:18,424 INFO : 58% Done
04 Mar 2020 13:17:18,485 DEBUG: Total peptides inserted: 1
04 Mar 2020 13:17:18,490 INFO : Inserting sp|P08631|HCK_HUMAN
04 Mar 2020 13:17:18,494 INFO : 64% Done
04 Mar 2020 13:17:18,554 DEBUG: Total peptides inserted: 1
04 Mar 2020 13:17:18,559 INFO : Inserting sp|P06241|FYN_HUMAN
04 Mar 2020 13:17:18,563 INFO : 70% Done
04 Mar 2020 13:17:18,620 DEBUG: Total peptides inserted: 1
04 Mar 2020 13:17:18,625 INFO : Inserting sp|P50613|CDK7_HUMAN
04 Mar 2020 13:17:18,630 INFO : 75% Done
04 Mar 2020 13:17:18,727 DEBUG: Total peptides inserted: 1
04 Mar 2020 13:17:18,727 INFO : 76% Done
04 Mar 2020 13:17:18,735 INFO : Inserting sp|P16083|NQO2_HUMAN
04 Mar 2020 13:17:18,743 INFO : 87% Done
04 Mar 2020 13:17:18,945 DEBUG: Total peptides inserted: 1
04 Mar 2020 13:17:18,953 INFO : Inserting sp|A7MCY6|TBKB1_HUMAN
04 Mar 2020 13:17:18,963 INFO : 98% Done
04 Mar 2020 13:17:19,160 DEBUG: Total peptides inserted: 1
04 Mar 2020 13:17:19,160 INFO : Done parsing Skyline document.
04 Mar 2020 13:17:19,165 INFO : Copied PRMassay_FLNc+phosphostandard.skyd to cloud storage.
04 Mar 2020 13:17:19,168 INFO : Copied PRMassay_FLNc+phosphostandard.blib to cloud storage.
04 Mar 2020 13:17:19,168 INFO : Copied PRMassay_FLNc+phosphostandard.redundant.blib to cloud storage.
04 Mar 2020 13:17:23,067 INFO : Completed import of Skyline document from PRMassay_FLNc+phosphostandard_2018-03-01_11-29-51.sky.zip
04 Mar 2020 13:17:23,069 INFO : 100% Done
04 Mar 2020 13:17:23,074 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Warscheid%20Lab%20-%20Targeted%20FLNc%20S2233%20S2236%20phosphorylation%20assay_dfd44896-4088-1038-b44d-3013bb9b1bc1/_temp__2020-03-04_13-13-19/export/xar/experiments_and_runs.xar.exploded/Run28030/PRMassay_FLNc+phosphostandard_2018-03-01_11-29-51.sky.zip into the system
04 Mar 2020 13:17:23,074 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Warscheid%20Lab%20-%20Targeted%20FLNc%20S2233%20S2236%20phosphorylation%20assay_dfd44896-4088-1038-b44d-3013bb9b1bc1/_temp__2020-03-04_13-13-19/export/xar/experiments_and_runs.xar.exploded/Run28004/FLNc_S2233_mutants_Phosphopeptides_2018-02-28_15-24-07.sky.zip into the system
04 Mar 2020 13:17:23,105 INFO : Starting import from FLNc_S2233_mutants_Phosphopeptides_2018-02-28_15-24-07.sky.zip
04 Mar 2020 13:17:23,110 INFO : Starting to import Skyline document from FLNc_S2233_mutants_Phosphopeptides_2018-02-28_15-24-07.sky.zip
04 Mar 2020 13:17:23,111 INFO : Expanding FLNc_S2233_mutants_Phosphopeptides.blib
04 Mar 2020 13:17:23,112 INFO : Expanding FLNc_S2233_mutants_Phosphopeptides.redundant.blib
04 Mar 2020 13:17:23,156 INFO : Expanding FLNc_S2233_mutants_Phosphopeptides.skyd
04 Mar 2020 13:17:23,352 INFO : Expanding FLNc_S2233_mutants_Phosphopeptides.sky.view
04 Mar 2020 13:17:23,352 INFO : Expanding FLNc_S2233_mutants_Phosphopeptides.sky
04 Mar 2020 13:17:23,360 INFO : 6% Done
04 Mar 2020 13:17:23,557 INFO : 9% Done
04 Mar 2020 13:17:23,564 INFO : Inserting sp|Q9UKE5|TNIK_HUMAN
04 Mar 2020 13:17:23,570 INFO : 18% Done
04 Mar 2020 13:17:23,623 DEBUG: Total peptides inserted: 1
04 Mar 2020 13:17:23,626 INFO : Inserting sp|Q86YS7|C2CD5_HUMAN
04 Mar 2020 13:17:23,628 INFO : 26% Done
04 Mar 2020 13:17:23,651 DEBUG: Total peptides inserted: 1
04 Mar 2020 13:17:23,651 INFO : Inserting hFLNc WT
04 Mar 2020 13:17:23,652 INFO : 31% Done
04 Mar 2020 13:17:23,707 INFO : 35% Done
04 Mar 2020 13:17:23,778 INFO : 41% Done
04 Mar 2020 13:17:23,852 INFO : 46% Done
04 Mar 2020 13:17:23,921 DEBUG: Total peptides inserted: 4
04 Mar 2020 13:17:23,922 INFO : Inserting hFLNc S2233A
04 Mar 2020 13:17:23,924 INFO : 51% Done
04 Mar 2020 13:17:24,228 DEBUG: Total peptides inserted: 1
04 Mar 2020 13:17:24,228 INFO : Inserting hFLNc S2233D
04 Mar 2020 13:17:24,231 INFO : 55% Done
04 Mar 2020 13:17:24,508 DEBUG: Total peptides inserted: 1
04 Mar 2020 13:17:24,516 INFO : Inserting sp|P08631|HCK_HUMAN
04 Mar 2020 13:17:24,519 INFO : 65% Done
04 Mar 2020 13:17:24,576 DEBUG: Total peptides inserted: 1
04 Mar 2020 13:17:24,584 INFO : Inserting sp|P06241|FYN_HUMAN
04 Mar 2020 13:17:24,587 INFO : 74% Done
04 Mar 2020 13:17:24,643 DEBUG: Total peptides inserted: 1
04 Mar 2020 13:17:24,650 INFO : Inserting sp|P50613|CDK7_HUMAN
04 Mar 2020 13:17:24,653 INFO : 82% Done
04 Mar 2020 13:17:24,712 DEBUG: Total peptides inserted: 1
04 Mar 2020 13:17:24,719 INFO : Inserting sp|P16083|NQO2_HUMAN
04 Mar 2020 13:17:24,724 INFO : 98% Done
04 Mar 2020 13:17:24,846 DEBUG: Total peptides inserted: 1
04 Mar 2020 13:17:24,846 INFO : Done parsing Skyline document.
04 Mar 2020 13:17:24,850 INFO : Copied FLNc_S2233_mutants_Phosphopeptides.skyd to cloud storage.
04 Mar 2020 13:17:24,853 INFO : Copied FLNc_S2233_mutants_Phosphopeptides.blib to cloud storage.
04 Mar 2020 13:17:24,853 INFO : Copied FLNc_S2233_mutants_Phosphopeptides.redundant.blib to cloud storage.
04 Mar 2020 13:17:28,568 INFO : Completed import of Skyline document from FLNc_S2233_mutants_Phosphopeptides_2018-02-28_15-24-07.sky.zip
04 Mar 2020 13:17:28,570 INFO : 100% Done
04 Mar 2020 13:17:28,574 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Warscheid%20Lab%20-%20Targeted%20FLNc%20S2233%20S2236%20phosphorylation%20assay_dfd44896-4088-1038-b44d-3013bb9b1bc1/_temp__2020-03-04_13-13-19/export/xar/experiments_and_runs.xar.exploded/Run28004/FLNc_S2233_mutants_Phosphopeptides_2018-02-28_15-24-07.sky.zip into the system
04 Mar 2020 13:17:28,594 INFO : Done importing xar
04 Mar 2020 13:17:28,598 INFO : Loading pages and webpart properties
04 Mar 2020 13:17:28,800 INFO : Done importing pages and webpart properties
04 Mar 2020 13:17:28,801 INFO :
04 Mar 2020 13:17:28,801 INFO : Experiment import completed successfully.
04 Mar 2020 13:17:28,801 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
04 Mar 2020 13:17:29,049 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
04 Mar 2020 13:17:29,050 INFO :
04 Mar 2020 13:17:29,050 INFO : Finishing up experiment copy.
04 Mar 2020 13:17:29,065 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
04 Mar 2020 13:17:29,258 INFO : Updating access URL to point to the new copy of the data.
04 Mar 2020 13:17:29,284 INFO : Setting the 'copied' timestamp on the JournalExperiment table.
04 Mar 2020 13:17:29,286 INFO : Removing copy permissions given to journal.
04 Mar 2020 13:17:29,309 INFO : Adding read permissions to all users that are folder admins in the source container.
04 Mar 2020 13:17:29,323 INFO : Setting the TargetedMS folder type to 'Experimental Data'
04 Mar 2020 13:17:29,335 INFO : Updating the 'Raw Data' tab configuration
04 Mar 2020 13:17:29,525 INFO : Updating dataFileUrls for run PRMassay_FLNc+phosphostandard_pepmap.sky.zip; targetedms run ID 84315
04 Mar 2020 13:17:29,613 INFO : Updating dataFileUrl...
04 Mar 2020 13:17:29,613 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/Warscheid%20Lab%20-%20Targeted%20FLNc%20S2233%20S2236%20phosphorylation%20assay_dfd44896-4088-1038-b44d-3013bb9b1bc1/_temp__2020-03-04_13-13-19/export/xar/experiments_and_runs.xar.exploded/Run78287/PRMassay_FLNc+phosphostandard_pepmap/PRMassay_FLNc+phosphostandard_pepmap.skyd
04 Mar 2020 13:17:29,614 INFO : to: s3://AKIA5MQP5NIGMB23EF37@s3.amazonaws.com/mc-pweb-lk-panoramapublic/container6592/PRMassay_FLNc+phosphostandard_pepmap/PRMassay_FLNc+phosphostandard_pepmap.skyd
04 Mar 2020 13:17:29,724 INFO : Updating dataFileUrl...
04 Mar 2020 13:17:29,725 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/Warscheid%20Lab%20-%20Targeted%20FLNc%20S2233%20S2236%20phosphorylation%20assay_dfd44896-4088-1038-b44d-3013bb9b1bc1/_temp__2020-03-04_13-13-19/export/xar/experiments_and_runs.xar.exploded/Run78287/PRMassay_FLNc+phosphostandard_pepmap.sky.zip
04 Mar 2020 13:17:29,725 INFO : to: s3://AKIA5MQP5NIGMB23EF37@s3.amazonaws.com/mc-pweb-lk-panoramapublic/container6592/PRMassay_FLNc+phosphostandard_pepmap.sky.zip
04 Mar 2020 13:17:29,782 INFO : Updating dataFileUrls for run PRMassay_FLNc+phosphostandard_2018-03-01_11-29-51.sky.zip; targetedms run ID 84316
04 Mar 2020 13:17:29,784 INFO : Adding ExpData for .skyd file
04 Mar 2020 13:17:29,938 INFO : Updating dataFileUrl...
04 Mar 2020 13:17:29,938 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/Warscheid%20Lab%20-%20Targeted%20FLNc%20S2233%20S2236%20phosphorylation%20assay_dfd44896-4088-1038-b44d-3013bb9b1bc1/_temp__2020-03-04_13-13-19/export/xar/experiments_and_runs.xar.exploded/Run28030/PRMassay_FLNc+phosphostandard_2018-03-01_11-29-51.sky.zip
04 Mar 2020 13:17:29,938 INFO : to: s3://AKIA5MQP5NIGMB23EF37@s3.amazonaws.com/mc-pweb-lk-panoramapublic/container6592/PRMassay_FLNc+phosphostandard_2018-03-01_11-29-51.sky.zip
04 Mar 2020 13:17:30,018 INFO : Updating dataFileUrl...
04 Mar 2020 13:17:30,018 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/Warscheid%20Lab%20-%20Targeted%20FLNc%20S2233%20S2236%20phosphorylation%20assay_dfd44896-4088-1038-b44d-3013bb9b1bc1/_temp__2020-03-04_13-13-19/export/xar/experiments_and_runs.xar.exploded/Run28030/PRMassay_FLNc+phosphostandard_2018-03-01_11-29-51/PRMassay_FLNc+phosphostandard.skyd
04 Mar 2020 13:17:30,019 INFO : to: s3://AKIA5MQP5NIGMB23EF37@s3.amazonaws.com/mc-pweb-lk-panoramapublic/container6592/PRMassay_FLNc+phosphostandard_2018-03-01_11-29-51/PRMassay_FLNc+phosphostandard.skyd
04 Mar 2020 13:17:30,062 INFO : Updating dataFileUrls for run FLNc_S2233_mutants_Phosphopeptides_2018-02-28_15-24-07.sky.zip; targetedms run ID 84317
04 Mar 2020 13:17:30,063 INFO : Adding ExpData for .skyd file
04 Mar 2020 13:17:30,131 INFO : Updating dataFileUrl...
04 Mar 2020 13:17:30,131 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/Warscheid%20Lab%20-%20Targeted%20FLNc%20S2233%20S2236%20phosphorylation%20assay_dfd44896-4088-1038-b44d-3013bb9b1bc1/_temp__2020-03-04_13-13-19/export/xar/experiments_and_runs.xar.exploded/Run28004/FLNc_S2233_mutants_Phosphopeptides_2018-02-28_15-24-07.sky.zip
04 Mar 2020 13:17:30,131 INFO : to: s3://AKIA5MQP5NIGMB23EF37@s3.amazonaws.com/mc-pweb-lk-panoramapublic/container6592/FLNc_S2233_mutants_Phosphopeptides_2018-02-28_15-24-07.sky.zip
04 Mar 2020 13:17:30,207 INFO : Updating dataFileUrl...
04 Mar 2020 13:17:30,207 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/Warscheid%20Lab%20-%20Targeted%20FLNc%20S2233%20S2236%20phosphorylation%20assay_dfd44896-4088-1038-b44d-3013bb9b1bc1/_temp__2020-03-04_13-13-19/export/xar/experiments_and_runs.xar.exploded/Run28004/FLNc_S2233_mutants_Phosphopeptides_2018-02-28_15-24-07/FLNc_S2233_mutants_Phosphopeptides.skyd
04 Mar 2020 13:17:30,208 INFO : to: s3://AKIA5MQP5NIGMB23EF37@s3.amazonaws.com/mc-pweb-lk-panoramapublic/container6592/FLNc_S2233_mutants_Phosphopeptides_2018-02-28_15-24-07/FLNc_S2233_mutants_Phosphopeptides.skyd
04 Mar 2020 13:17:30,273 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'