24 Jan 2020 09:50:39,250 INFO : Copying experiment "A mouse brain-based multi-omics integrative approach reveals potential blood biomarkers for ischemic stroke" from folder /Vall d'Hebrón Institute - Neurovascular Lab/A mouse brain-based multi-omics integrative approach reveals potential blood biomarkers for ischemic stroke to /Panorama Public/2020/Vall d'Hebrón Institute - A mouse brain-based multi-omics integrative approach reveals potential blood biomarkers for ischemic stroke
24 Jan 2020 09:50:39,251 INFO : =======================================
24 Jan 2020 09:50:39,537 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
24 Jan 2020 09:50:39,537 INFO :
24 Jan 2020 09:50:39,537 INFO : Exporting experiment.
24 Jan 2020 09:50:48,980 INFO :
24 Jan 2020 09:50:48,980 INFO : Experiment export completed successfully.
24 Jan 2020 09:50:48,980 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
24 Jan 2020 09:50:49,062 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
24 Jan 2020 09:50:49,062 INFO :
24 Jan 2020 09:50:49,062 INFO : Importing experiment.
24 Jan 2020 09:50:49,067 INFO : Loading folder properties (folder type, settings and active modules)
24 Jan 2020 09:50:49,182 INFO : Done importing folder properties (folder type, settings and active modules)
24 Jan 2020 09:50:49,185 INFO : Loading etl definitions
24 Jan 2020 09:50:49,187 INFO : Loading wikis
24 Jan 2020 09:50:49,210 INFO : 0 wikis imported
24 Jan 2020 09:50:49,211 INFO : Done importing wikis
24 Jan 2020 09:50:56,002 INFO : Loading xar
24 Jan 2020 09:50:56,413 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-6387:TargetedMS.ImportSkyZip'
24 Jan 2020 09:50:56,421 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-6387:TargetedMS.ImportSkyZip.Core'
24 Jan 2020 09:50:56,428 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-6387:TargetedMS.ImportSkyZip.Output'
24 Jan 2020 09:50:56,428 DEBUG: Protocol import complete
24 Jan 2020 09:50:56,440 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-6387:A+mouse+brain-based+multi-omics+integrative+approach+reveals+potential+blood+biomarkers+for+ischemic+stroke'
24 Jan 2020 09:50:56,441 DEBUG: Experiment/Run group import complete
24 Jan 2020 09:50:56,476 DEBUG: Protocol action set import complete
24 Jan 2020 09:50:56,534 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6387:TargetedMS.ImportSkyZip'
24 Jan 2020 09:50:56,605 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6387:526638be-20b8-1038-aabe-3013bb9bf748'
24 Jan 2020 09:50:56,634 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6387:526638b0-20b8-1038-aabe-3013bb9bf748'
24 Jan 2020 09:50:56,634 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6387:TargetedMS.ImportSkyZip.Core'
24 Jan 2020 09:50:56,642 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6387:TargetedMS.ImportSkyZip.Output'
24 Jan 2020 09:50:56,644 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6387:526638f3-20b8-1038-aabe-3013bb9bf748'
24 Jan 2020 09:50:56,646 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2020/Vall%20d'Hebr%C3%B3n%20Institute%20-%20A%20mouse%20brain-based%20multi-omics%20integrative%20approach%20reveals%20potential%20blood%20biomarkers%20for%20ischemic%20stroke/@files/export/xar/experiments_and_runs.xar.exploded/Run79711/Targeted_OT_AlbaS_Proteomica_duplicatsOK_2020-01-24_10-58-06/Targeted_OT_AlbaS_Proteomica_duplicatsOK.skyd into the system
24 Jan 2020 09:50:56,648 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2020/Vall%20d'Hebr%C3%B3n%20Institute%20-%20A%20mouse%20brain-based%20multi-omics%20integrative%20approach%20reveals%20potential%20blood%20biomarkers%20for%20ischemic%20stroke/@files/export/xar/experiments_and_runs.xar.exploded/Run79711/Targeted_OT_AlbaS_Proteomica_duplicatsOK_2020-01-24_10-58-06/Targeted_OT_AlbaS_Proteomica_duplicatsOK.skyd into the system
24 Jan 2020 09:50:56,648 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2020/Vall%20d'Hebr%C3%B3n%20Institute%20-%20A%20mouse%20brain-based%20multi-omics%20integrative%20approach%20reveals%20potential%20blood%20biomarkers%20for%20ischemic%20stroke/@files/export/xar/experiments_and_runs.xar.exploded/Run79711/Targeted_OT_AlbaS_Proteomica_duplicatsOK_2020-01-24_10-58-06.sky.zip into the system
24 Jan 2020 09:50:56,652 INFO : Starting import from Targeted_OT_AlbaS_Proteomica_duplicatsOK_2020-01-24_10-58-06.sky.zip
24 Jan 2020 09:50:56,664 INFO : Starting to import Skyline document from Targeted_OT_AlbaS_Proteomica_duplicatsOK_2020-01-24_10-58-06.sky.zip
24 Jan 2020 09:50:56,676 INFO : Expanding Targeted_OT_AlbaS_Proteomica_duplicatsOK.skyd
24 Jan 2020 09:50:56,989 INFO : Expanding Targeted_OT_AlbaS_Proteomica_duplicatsOK.sky.view
24 Jan 2020 09:50:56,989 INFO : Expanding Targeted_OT_AlbaS_Proteomica_duplicatsOK.sky
24 Jan 2020 09:50:57,014 WARN : The version of this Skyline document is 19.1. This is newer than the highest supported version 4.1
24 Jan 2020 09:50:57,032 INFO : 2% Done
24 Jan 2020 09:50:57,459 INFO : Inserting TXN2
24 Jan 2020 09:50:57,534 INFO : 11% Done
24 Jan 2020 09:50:58,128 INFO : 20% Done
24 Jan 2020 09:50:58,854 DEBUG: Total peptides inserted: 2
24 Jan 2020 09:50:58,854 INFO : 21% Done
24 Jan 2020 09:50:58,855 INFO : Inserting CTNND2
24 Jan 2020 09:50:58,891 INFO : 27% Done
24 Jan 2020 09:50:59,449 INFO : 35% Done
24 Jan 2020 09:50:59,873 DEBUG: Total peptides inserted: 2
24 Jan 2020 09:50:59,873 INFO : Inserting CAMK2A
24 Jan 2020 09:50:59,884 INFO : 45% Done
24 Jan 2020 09:51:00,422 INFO : 54% Done
24 Jan 2020 09:51:00,939 DEBUG: Total peptides inserted: 2
24 Jan 2020 09:51:00,940 INFO : Inserting PPIA
24 Jan 2020 09:51:00,948 INFO : 64% Done
24 Jan 2020 09:51:01,449 INFO : 73% Done
24 Jan 2020 09:51:01,940 DEBUG: Total peptides inserted: 2
24 Jan 2020 09:51:01,940 INFO : Inserting GAPDH
24 Jan 2020 09:51:01,965 INFO : 80% Done
24 Jan 2020 09:51:02,388 INFO : 90% Done
24 Jan 2020 09:51:02,866 DEBUG: Total peptides inserted: 2
24 Jan 2020 09:51:02,866 INFO : Inserting B2M
24 Jan 2020 09:51:02,874 INFO : 98% Done
24 Jan 2020 09:51:03,288 DEBUG: Total peptides inserted: 1
24 Jan 2020 09:51:03,288 INFO : Done parsing Skyline document.
24 Jan 2020 09:51:06,358 INFO : Completed import of Skyline document from Targeted_OT_AlbaS_Proteomica_duplicatsOK_2020-01-24_10-58-06.sky.zip
24 Jan 2020 09:51:06,359 INFO : 100% Done
24 Jan 2020 09:51:06,365 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2020/Vall%20d'Hebr%C3%B3n%20Institute%20-%20A%20mouse%20brain-based%20multi-omics%20integrative%20approach%20reveals%20potential%20blood%20biomarkers%20for%20ischemic%20stroke/@files/export/xar/experiments_and_runs.xar.exploded/Run79711/Targeted_OT_AlbaS_Proteomica_duplicatsOK_2020-01-24_10-58-06.sky.zip into the system
24 Jan 2020 09:51:06,375 INFO : Done importing xar
24 Jan 2020 09:51:06,378 INFO : Loading pages and webpart properties
24 Jan 2020 09:51:06,461 INFO : Done importing pages and webpart properties
24 Jan 2020 09:51:06,461 INFO :
24 Jan 2020 09:51:06,461 INFO : Experiment import completed successfully.
24 Jan 2020 09:51:06,461 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
24 Jan 2020 09:51:06,501 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
24 Jan 2020 09:51:06,501 INFO :
24 Jan 2020 09:51:06,501 INFO : Finishing up experiment copy.
24 Jan 2020 09:51:06,502 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
24 Jan 2020 09:51:06,538 INFO : Updating access URL to point to the new copy of the data.
24 Jan 2020 09:51:06,541 INFO : Setting the 'copied' timestamp on the JournalExperiment table.
24 Jan 2020 09:51:06,542 INFO : Removing copy permissions given to journal.
24 Jan 2020 09:51:06,552 INFO : Adding read permissions to all users that are folder admins in the source container.
24 Jan 2020 09:51:06,558 INFO : Setting the TargetedMS folder type to 'Experimental Data'
24 Jan 2020 09:51:06,565 INFO : Updating the 'Raw Data' tab configuration
24 Jan 2020 09:51:06,568 INFO : Updating dataFileUrls for run Targeted_OT_AlbaS_Proteomica_duplicatsOK_2020-01-24_10-58-06.sky.zip; targetedms run ID 81565
24 Jan 2020 09:51:06,568 INFO : Updating dataFileUrl...
24 Jan 2020 09:51:06,568 INFO : from: file:///data/labkey/files/Panorama%20Public/2020/Vall%20d'Hebr%C3%B3n%20Institute%20-%20A%20mouse%20brain-based%20multi-omics%20integrative%20approach%20reveals%20potential%20blood%20biomarkers%20for%20ischemic%20stroke/@files/export/xar/experiments_and_runs.xar.exploded/Run79711/Targeted_OT_AlbaS_Proteomica_duplicatsOK_2020-01-24_10-58-06.sky.zip
24 Jan 2020 09:51:06,568 INFO : to: file:///data/labkey/files/Panorama%20Public/2020/Vall%20d'Hebr%C3%B3n%20Institute%20-%20A%20mouse%20brain-based%20multi-omics%20integrative%20approach%20reveals%20potential%20blood%20biomarkers%20for%20ischemic%20stroke/@files/Targeted_OT_AlbaS_Proteomica_duplicatsOK_2020-01-24_10-58-06.sky.zip
24 Jan 2020 09:51:06,571 INFO : Updating dataFileUrl...
24 Jan 2020 09:51:06,571 INFO : from: file:///data/labkey/files/Panorama%20Public/2020/Vall%20d'Hebr%C3%B3n%20Institute%20-%20A%20mouse%20brain-based%20multi-omics%20integrative%20approach%20reveals%20potential%20blood%20biomarkers%20for%20ischemic%20stroke/@files/export/xar/experiments_and_runs.xar.exploded/Run79711/Targeted_OT_AlbaS_Proteomica_duplicatsOK_2020-01-24_10-58-06/Targeted_OT_AlbaS_Proteomica_duplicatsOK.skyd
24 Jan 2020 09:51:06,571 INFO : to: file:///data/labkey/files/Panorama%20Public/2020/Vall%20d'Hebr%C3%B3n%20Institute%20-%20A%20mouse%20brain-based%20multi-omics%20integrative%20approach%20reveals%20potential%20blood%20biomarkers%20for%20ischemic%20stroke/@files/Targeted_OT_AlbaS_Proteomica_duplicatsOK_2020-01-24_10-58-06/Targeted_OT_AlbaS_Proteomica_duplicatsOK.skyd
24 Jan 2020 09:51:07,709 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'