Skyline document import - Inter-day QC_2020-06-02_14-12-41.sky.zip: /Panorama Public/2020/U of Liege

Skyline document import - Inter-day QC_2020-06-02_14-12-41.sky.zip

U of Liege - STORI study

Job Status

Created:

2020-06-02 05:39:13

Modified:

2020-06-02 05:39:34

Email:

vsharma@uw.edu

Status:

COMPLETE

Info:

Description:

Skyline document import - Inter-day QC_2020-06-02_14-12-41.sky.zip

File Path:

/data/labkey/files/Panorama Public/2020/U of Liege - STORI study/@files/Inter-day_QC_2020-06-02_14-12-41.sky_2020-06-02_05-39-13.log

Files:

Inter-day_QC_2020-06-02_14-12-41.sky_2020-06-02_05-39-13.log

Join job:

Status	Description

Split jobs:

Status	Description

Completed Runs:

Inter-day QC_2020-06-02_14-12-41.sky.zip

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Log File

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02 Jun 2020 05:39:23,971 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

02 Jun 2020 05:39:23,985 INFO : Starting to import Skyline document from Inter-day QC_2020-06-02_14-12-41.sky.zip

02 Jun 2020 05:39:23,988 INFO : Expanding Inter-day QC.skyd

02 Jun 2020 05:39:24,233 INFO : Expanding Inter-day QC.sky.view

02 Jun 2020 05:39:24,246 INFO : Expanding Inter-day QC.sky

02 Jun 2020 05:39:24,309 WARN : The version of this Skyline document is 4.2. This is newer than the highest supported version 4.1

02 Jun 2020 05:39:24,315 INFO : 1% Done

02 Jun 2020 05:39:24,590 INFO : Inserting sp|P00450|CERU_HUMAN

02 Jun 2020 05:39:24,639 INFO : 2% Done

02 Jun 2020 05:39:24,666 DEBUG: Total peptides inserted: 2

02 Jun 2020 05:39:24,675 INFO : Inserting sp|P00747|PLMN_HUMAN

02 Jun 2020 05:39:24,733 INFO : 3% Done

02 Jun 2020 05:39:24,759 DEBUG: Total peptides inserted: 3

02 Jun 2020 05:39:24,769 INFO : Inserting sp|P59665|DEF1_HUMAN

02 Jun 2020 05:39:24,776 INFO : 4% Done

02 Jun 2020 05:39:24,847 DEBUG: Total peptides inserted: 2

02 Jun 2020 05:39:24,856 INFO : Inserting sp|P01024|CO3_HUMAN

02 Jun 2020 05:39:24,863 INFO : 5% Done

02 Jun 2020 05:39:24,919 INFO : 6% Done

02 Jun 2020 05:39:24,944 DEBUG: Total peptides inserted: 3

02 Jun 2020 05:39:24,953 INFO : Inserting sp|P02749|APOH_HUMAN

02 Jun 2020 05:39:25,007 DEBUG: Total peptides inserted: 2

02 Jun 2020 05:39:25,016 INFO : Inserting sp|P02765|FETUA_HUMAN

02 Jun 2020 05:39:25,023 INFO : 7% Done

02 Jun 2020 05:39:25,049 DEBUG: Total peptides inserted: 1

02 Jun 2020 05:39:25,058 INFO : Inserting sp|P02647|APOA1_HUMAN

02 Jun 2020 05:39:25,064 INFO : 8% Done

02 Jun 2020 05:39:25,117 INFO : 9% Done

02 Jun 2020 05:39:25,142 DEBUG: Total peptides inserted: 3

02 Jun 2020 05:39:25,151 INFO : Inserting sp|O75882|ATRN_HUMAN

02 Jun 2020 05:39:25,157 INFO : 10% Done

02 Jun 2020 05:39:25,182 DEBUG: Total peptides inserted: 1

02 Jun 2020 05:39:25,183 INFO : Inserting P07359

02 Jun 2020 05:39:25,210 DEBUG: Total peptides inserted: 1

02 Jun 2020 05:39:25,218 INFO : Inserting sp|P55056|APOC4_HUMAN

02 Jun 2020 05:39:25,244 DEBUG: Total peptides inserted: 1

02 Jun 2020 05:39:25,252 INFO : Inserting sp|P07358|CO8B_HUMAN

02 Jun 2020 05:39:25,266 INFO : 11% Done

02 Jun 2020 05:39:25,291 DEBUG: Total peptides inserted: 1

02 Jun 2020 05:39:25,299 INFO : Inserting sp|O00187|MASP2_HUMAN

02 Jun 2020 05:39:25,326 DEBUG: Total peptides inserted: 1

02 Jun 2020 05:39:25,334 INFO : Inserting sp|P02655|APOC2_HUMAN

02 Jun 2020 05:39:25,341 INFO : 12% Done

02 Jun 2020 05:39:25,366 DEBUG: Total peptides inserted: 1

02 Jun 2020 05:39:25,374 INFO : Inserting sp|P02750|A2GL_HUMAN

02 Jun 2020 05:39:25,381 INFO : 13% Done

02 Jun 2020 05:39:25,434 INFO : 14% Done

02 Jun 2020 05:39:25,459 DEBUG: Total peptides inserted: 3

02 Jun 2020 05:39:25,467 INFO : Inserting sp|P06681|CO2_HUMAN

02 Jun 2020 05:39:25,523 INFO : 15% Done

02 Jun 2020 05:39:25,548 DEBUG: Total peptides inserted: 3

02 Jun 2020 05:39:25,556 INFO : Inserting sp|P02760|AMBP_HUMAN

02 Jun 2020 05:39:25,562 INFO : 16% Done

02 Jun 2020 05:39:26,327 DEBUG: Total peptides inserted: 2

02 Jun 2020 05:39:26,336 INFO : Inserting sp|O75636|FCN3_HUMAN

02 Jun 2020 05:39:26,343 INFO : 17% Done

02 Jun 2020 05:39:26,368 DEBUG: Total peptides inserted: 1

02 Jun 2020 05:39:26,376 INFO : Inserting sp|P05156|CFAI_HUMAN

02 Jun 2020 05:39:26,383 INFO : 18% Done

02 Jun 2020 05:39:26,432 DEBUG: Total peptides inserted: 2

02 Jun 2020 05:39:26,441 INFO : Inserting sp|P07357|CO8A_HUMAN

02 Jun 2020 05:39:26,491 DEBUG: Total peptides inserted: 2

02 Jun 2020 05:39:26,496 INFO : 19% Done

02 Jun 2020 05:39:26,505 INFO : Inserting sp|P06276|CHLE_HUMAN

02 Jun 2020 05:39:26,536 INFO : 20% Done

02 Jun 2020 05:39:26,561 DEBUG: Total peptides inserted: 2

02 Jun 2020 05:39:26,569 INFO : Inserting sp|P10643|CO7_HUMAN

02 Jun 2020 05:39:26,643 INFO : 21% Done

02 Jun 2020 05:39:26,668 DEBUG: Total peptides inserted: 2

02 Jun 2020 05:39:26,677 INFO : Inserting sp|P19827|ITIH1_HUMAN

02 Jun 2020 05:39:26,683 INFO : 22% Done

02 Jun 2020 05:39:26,757 DEBUG: Total peptides inserted: 3

02 Jun 2020 05:39:26,765 INFO : Inserting sp|P02743|SAMP_HUMAN

02 Jun 2020 05:39:26,772 INFO : 23% Done

02 Jun 2020 05:39:26,826 INFO : 24% Done

02 Jun 2020 05:39:26,851 DEBUG: Total peptides inserted: 3

02 Jun 2020 05:39:26,859 INFO : Inserting sp|P05452|TETN_HUMAN

02 Jun 2020 05:39:26,865 INFO : 25% Done

02 Jun 2020 05:39:26,917 DEBUG: Total peptides inserted: 2

02 Jun 2020 05:39:26,926 INFO : Inserting sp|P02748|CO9_HUMAN

02 Jun 2020 05:39:26,932 INFO : 26% Done

02 Jun 2020 05:39:27,006 DEBUG: Total peptides inserted: 3

02 Jun 2020 05:39:27,014 INFO : Inserting sp|P01031|CO5_HUMAN

02 Jun 2020 05:39:27,021 INFO : 27% Done

02 Jun 2020 05:39:27,075 INFO : 28% Done

02 Jun 2020 05:39:27,100 DEBUG: Total peptides inserted: 3

02 Jun 2020 05:39:27,108 INFO : Inserting sp|P00751|CFAB_HUMAN

02 Jun 2020 05:39:27,115 INFO : 29% Done

02 Jun 2020 05:39:27,168 INFO : 30% Done

02 Jun 2020 05:39:27,193 DEBUG: Total peptides inserted: 3

02 Jun 2020 05:39:27,201 INFO : Inserting sp|P10909|CLUS_HUMAN

02 Jun 2020 05:39:27,252 DEBUG: Total peptides inserted: 2

02 Jun 2020 05:39:27,260 INFO : Inserting sp|P35858|ALS_HUMAN

02 Jun 2020 05:39:27,267 INFO : 31% Done

02 Jun 2020 05:39:27,296 INFO : 32% Done

02 Jun 2020 05:39:27,321 DEBUG: Total peptides inserted: 2

02 Jun 2020 05:39:27,329 INFO : Inserting sp|P13671|CO6_HUMAN

02 Jun 2020 05:39:27,356 DEBUG: Total peptides inserted: 1

02 Jun 2020 05:39:27,364 INFO : Inserting sp|P07996|TSP1_HUMAN

02 Jun 2020 05:39:27,371 INFO : 33% Done

02 Jun 2020 05:39:27,400 INFO : 34% Done

02 Jun 2020 05:39:27,424 DEBUG: Total peptides inserted: 2

02 Jun 2020 05:39:27,433 INFO : Inserting sp|O14791|APOL1_HUMAN

02 Jun 2020 05:39:27,483 DEBUG: Total peptides inserted: 2

02 Jun 2020 05:39:27,492 INFO : Inserting sp|P01011|AACT_HUMAN

02 Jun 2020 05:39:27,566 INFO : 35% Done

02 Jun 2020 05:39:27,599 INFO : 36% Done

02 Jun 2020 05:39:27,624 DEBUG: Total peptides inserted: 3

02 Jun 2020 05:39:27,632 INFO : Inserting sp|P05155|IC1_HUMAN

02 Jun 2020 05:39:27,639 INFO : 37% Done

02 Jun 2020 05:39:27,692 INFO : 38% Done

02 Jun 2020 05:39:27,717 DEBUG: Total peptides inserted: 3

02 Jun 2020 05:39:27,725 INFO : Inserting sp|P04004|VTNC_HUMAN

02 Jun 2020 05:39:27,777 DEBUG: Total peptides inserted: 2

02 Jun 2020 05:39:27,785 INFO : Inserting sp|Q96KN2|CNDP1_HUMAN

02 Jun 2020 05:39:27,792 INFO : 39% Done

02 Jun 2020 05:39:27,841 DEBUG: Total peptides inserted: 2

02 Jun 2020 05:39:27,849 INFO : Inserting sp|P19823|ITIH2_HUMAN

02 Jun 2020 05:39:27,855 INFO : 40% Done

02 Jun 2020 05:39:27,886 INFO : 41% Done

02 Jun 2020 05:39:27,910 DEBUG: Total peptides inserted: 2

02 Jun 2020 05:39:27,919 INFO : Inserting sp|P05543|THBG_HUMAN

02 Jun 2020 05:39:27,945 DEBUG: Total peptides inserted: 1

02 Jun 2020 05:39:27,953 INFO : Inserting sp|P36955|PEDF_HUMAN

02 Jun 2020 05:39:27,960 INFO : 42% Done

02 Jun 2020 05:39:28,037 DEBUG: Total peptides inserted: 3

02 Jun 2020 05:39:28,046 INFO : Inserting sp|P00742|FA10_HUMAN

02 Jun 2020 05:39:28,053 INFO : 43% Done

02 Jun 2020 05:39:28,078 DEBUG: Total peptides inserted: 1

02 Jun 2020 05:39:28,087 INFO : Inserting sp|P06396|GELS_HUMAN

02 Jun 2020 05:39:28,094 INFO : 44% Done

02 Jun 2020 05:39:28,144 DEBUG: Total peptides inserted: 2

02 Jun 2020 05:39:28,153 INFO : Inserting sp|Q06033|ITIH3_HUMAN

02 Jun 2020 05:39:28,160 INFO : 45% Done

02 Jun 2020 05:39:28,187 DEBUG: Total peptides inserted: 1

02 Jun 2020 05:39:28,196 INFO : Inserting sp|P07360|CO8G_HUMAN

02 Jun 2020 05:39:28,204 INFO : 46% Done

02 Jun 2020 05:39:28,285 DEBUG: Total peptides inserted: 3

02 Jun 2020 05:39:28,295 INFO : Inserting sp|P29622|KAIN_HUMAN

02 Jun 2020 05:39:28,331 INFO : 47% Done

02 Jun 2020 05:39:28,366 INFO : 48% Done

02 Jun 2020 05:39:28,392 DEBUG: Total peptides inserted: 3

02 Jun 2020 05:39:28,403 INFO : Inserting sp|P02741|CRP_HUMAN

02 Jun 2020 05:39:28,440 DEBUG: Total peptides inserted: 1

02 Jun 2020 05:39:28,450 INFO : Inserting sp|P05546|HEP2_HUMAN

02 Jun 2020 05:39:28,457 INFO : 49% Done

02 Jun 2020 05:39:28,510 DEBUG: Total peptides inserted: 2

02 Jun 2020 05:39:28,515 INFO : 50% Done

02 Jun 2020 05:39:28,524 INFO : Inserting sp|P51884|LUM_HUMAN

02 Jun 2020 05:39:28,584 DEBUG: Total peptides inserted: 2

02 Jun 2020 05:39:28,593 INFO : Inserting sp|P00740|FA9_HUMAN

02 Jun 2020 05:39:28,601 INFO : 51% Done

02 Jun 2020 05:39:28,627 DEBUG: Total peptides inserted: 1

02 Jun 2020 05:39:28,635 INFO : Inserting sp|P22792|CPN2_HUMAN

02 Jun 2020 05:39:28,667 INFO : 52% Done

02 Jun 2020 05:39:28,716 DEBUG: Total peptides inserted: 3

02 Jun 2020 05:39:28,722 INFO : 53% Done

02 Jun 2020 05:39:28,730 INFO : Inserting sp|P08603|CFAH_HUMAN

02 Jun 2020 05:39:28,780 INFO : 54% Done

02 Jun 2020 05:39:28,832 DEBUG: Total peptides inserted: 3

02 Jun 2020 05:39:28,841 INFO : Inserting sp|P35542|SAA4_HUMAN

02 Jun 2020 05:39:28,873 INFO : 55% Done

02 Jun 2020 05:39:28,923 DEBUG: Total peptides inserted: 3

02 Jun 2020 05:39:28,933 INFO : Inserting sp|P0CF74|LAC6_HUMAN

02 Jun 2020 05:39:28,940 INFO : 56% Done

02 Jun 2020 05:39:28,992 DEBUG: Total peptides inserted: 2

02 Jun 2020 05:39:29,001 INFO : Inserting sp|P01591|IGJ_HUMAN

02 Jun 2020 05:39:29,008 INFO : 57% Done

02 Jun 2020 05:39:29,039 INFO : 58% Done

02 Jun 2020 05:39:29,091 DEBUG: Total peptides inserted: 3

02 Jun 2020 05:39:29,100 INFO : Inserting sp|P02652|APOA2_HUMAN

02 Jun 2020 05:39:29,127 DEBUG: Total peptides inserted: 1

02 Jun 2020 05:39:29,136 INFO : Inserting sp|P02787|TRFE_HUMAN

02 Jun 2020 05:39:29,143 INFO : 59% Done

02 Jun 2020 05:39:29,199 INFO : 60% Done

02 Jun 2020 05:39:29,246 DEBUG: Total peptides inserted: 3

02 Jun 2020 05:39:29,257 INFO : Inserting sp|P11226|MBL2_HUMAN

02 Jun 2020 05:39:29,265 INFO : 61% Done

02 Jun 2020 05:39:29,319 DEBUG: Total peptides inserted: 2

02 Jun 2020 05:39:29,327 INFO : Inserting sp|P01625|KV402_HUMAN

02 Jun 2020 05:39:29,334 INFO : 62% Done

02 Jun 2020 05:39:29,415 DEBUG: Total peptides inserted: 3

02 Jun 2020 05:39:29,424 INFO : Inserting sp|P14151|LYAM1_HUMAN

02 Jun 2020 05:39:29,431 INFO : 63% Done

02 Jun 2020 05:39:29,458 DEBUG: Total peptides inserted: 1

02 Jun 2020 05:39:29,465 INFO : Inserting sp|P01765|HV304_HUMAN

02 Jun 2020 05:39:29,493 DEBUG: Total peptides inserted: 1

02 Jun 2020 05:39:29,502 INFO : Inserting sp|P0DJI8|SAA1_HUMAN

02 Jun 2020 05:39:29,510 INFO : 64% Done

02 Jun 2020 05:39:29,536 DEBUG: Total peptides inserted: 1

02 Jun 2020 05:39:29,546 INFO : Inserting sp|P00924|ENO1_YEAST

02 Jun 2020 05:39:29,553 INFO : 65% Done

02 Jun 2020 05:39:29,585 INFO : 66% Done

02 Jun 2020 05:39:29,702 DEBUG: Total peptides inserted: 5

02 Jun 2020 05:39:29,708 INFO : 67% Done

02 Jun 2020 05:39:29,719 INFO : Inserting sp|P0C0L5|CO4B_HUMAN

02 Jun 2020 05:39:29,751 INFO : 68% Done

02 Jun 2020 05:39:29,801 DEBUG: Total peptides inserted: 3

02 Jun 2020 05:39:29,810 INFO : Inserting sp|P37802|TAGL2_HUMAN

02 Jun 2020 05:39:29,817 INFO : 69% Done

02 Jun 2020 05:39:29,847 INFO : 70% Done

02 Jun 2020 05:39:29,874 DEBUG: Total peptides inserted: 2

02 Jun 2020 05:39:29,882 INFO : Inserting sp|P02656|APOC3_HUMAN

02 Jun 2020 05:39:29,959 DEBUG: Total peptides inserted: 3

02 Jun 2020 05:39:29,968 INFO : Inserting sp|P04278|SHBG_HUMAN

02 Jun 2020 05:39:29,975 INFO : 71% Done

02 Jun 2020 05:39:30,006 INFO : 72% Done

02 Jun 2020 05:39:30,033 DEBUG: Total peptides inserted: 2

02 Jun 2020 05:39:30,041 INFO : Inserting sp|P00738|HPT_HUMAN

02 Jun 2020 05:39:30,073 INFO : 73% Done

02 Jun 2020 05:39:30,099 DEBUG: Total peptides inserted: 2

02 Jun 2020 05:39:30,108 INFO : Inserting sp|P02763|A1AG1_HUMAN

02 Jun 2020 05:39:30,115 INFO : 74% Done

02 Jun 2020 05:39:30,190 DEBUG: Total peptides inserted: 3

02 Jun 2020 05:39:30,199 INFO : Inserting sp|P00739|HPTR_HUMAN

02 Jun 2020 05:39:30,206 INFO : 75% Done

02 Jun 2020 05:39:30,233 DEBUG: Total peptides inserted: 1

02 Jun 2020 05:39:30,242 INFO : Inserting sp|P01876|IGHA1_HUMAN

02 Jun 2020 05:39:30,277 INFO : 76% Done

02 Jun 2020 05:39:30,330 DEBUG: Total peptides inserted: 3

02 Jun 2020 05:39:30,336 INFO : 77% Done

02 Jun 2020 05:39:30,345 INFO : Inserting sp|P20851|C4BPB_HUMAN

02 Jun 2020 05:39:30,378 INFO : 78% Done

02 Jun 2020 05:39:30,406 DEBUG: Total peptides inserted: 2

02 Jun 2020 05:39:30,415 INFO : Inserting sp|P04196|HRG_HUMAN

02 Jun 2020 05:39:30,474 INFO : 79% Done

02 Jun 2020 05:39:30,503 DEBUG: Total peptides inserted: 3

02 Jun 2020 05:39:30,512 INFO : Inserting sp|P20742|PZP_HUMAN

02 Jun 2020 05:39:30,520 INFO : 80% Done

02 Jun 2020 05:39:30,546 DEBUG: Total peptides inserted: 1

02 Jun 2020 05:39:30,555 INFO : Inserting sp|P36980|FHR2_HUMAN

02 Jun 2020 05:39:30,582 DEBUG: Total peptides inserted: 1

02 Jun 2020 05:39:30,583 INFO : Done parsing Skyline document.

02 Jun 2020 05:39:30,588 INFO : Calculating fold changes

02 Jun 2020 05:39:30,589 DEBUG: Calculating fold change for group comparison NP, 1 of 1

02 Jun 2020 05:39:33,976 INFO : 98% Done

02 Jun 2020 05:39:33,977 INFO : Done calculating fold changes.

02 Jun 2020 05:39:33,983 INFO : Creating and populating temp tables for Proportion values

02 Jun 2020 05:39:34,028 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

02 Jun 2020 05:39:34,179 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

02 Jun 2020 05:39:34,289 INFO : Cleaning up temp tables

02 Jun 2020 05:39:34,294 INFO : Completed import of Skyline document from Inter-day QC_2020-06-02_14-12-41.sky.zip

02 Jun 2020 05:39:34,308 INFO : 100% Done

02 Jun 2020 05:39:34,391 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'