02 Jun 2020 05:39:13,640 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'
02 Jun 2020 05:39:13,654 INFO : Starting to import Skyline document from Instrumental set-up QC_2020-06-02_14-10-53.sky.zip
02 Jun 2020 05:39:13,657 INFO : Expanding Instrumental set-up QC.skyd
02 Jun 2020 05:39:13,892 INFO : Expanding Instrumental set-up QC.sky.view
02 Jun 2020 05:39:13,906 INFO : Expanding Instrumental set-up QC.sky
02 Jun 2020 05:39:13,966 WARN : The version of this Skyline document is 4.2. This is newer than the highest supported version 4.1
02 Jun 2020 05:39:13,972 INFO : 1% Done
02 Jun 2020 05:39:14,174 INFO : Inserting sp|P00450|CERU_HUMAN
02 Jun 2020 05:39:14,272 INFO : 2% Done
02 Jun 2020 05:39:14,301 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:14,310 INFO : Inserting sp|P00747|PLMN_HUMAN
02 Jun 2020 05:39:14,368 INFO : 3% Done
02 Jun 2020 05:39:14,393 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:14,402 INFO : Inserting sp|P59665|DEF1_HUMAN
02 Jun 2020 05:39:14,409 INFO : 4% Done
02 Jun 2020 05:39:14,460 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:14,470 INFO : Inserting sp|P01024|CO3_HUMAN
02 Jun 2020 05:39:14,492 INFO : 5% Done
02 Jun 2020 05:39:14,565 INFO : 6% Done
02 Jun 2020 05:39:14,591 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:14,600 INFO : Inserting sp|P02749|APOH_HUMAN
02 Jun 2020 05:39:14,657 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:14,666 INFO : Inserting sp|P02765|FETUA_HUMAN
02 Jun 2020 05:39:14,674 INFO : 7% Done
02 Jun 2020 05:39:14,700 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:14,709 INFO : Inserting sp|P02647|APOA1_HUMAN
02 Jun 2020 05:39:14,716 INFO : 8% Done
02 Jun 2020 05:39:14,786 INFO : 9% Done
02 Jun 2020 05:39:14,811 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:14,819 INFO : Inserting sp|O75882|ATRN_HUMAN
02 Jun 2020 05:39:14,826 INFO : 10% Done
02 Jun 2020 05:39:14,852 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:14,852 INFO : Inserting P07359
02 Jun 2020 05:39:14,879 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:14,887 INFO : Inserting sp|P55056|APOC4_HUMAN
02 Jun 2020 05:39:14,957 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:14,966 INFO : Inserting sp|P07358|CO8B_HUMAN
02 Jun 2020 05:39:14,972 INFO : 11% Done
02 Jun 2020 05:39:14,999 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:15,008 INFO : Inserting sp|O00187|MASP2_HUMAN
02 Jun 2020 05:39:15,035 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:15,043 INFO : Inserting sp|P02655|APOC2_HUMAN
02 Jun 2020 05:39:15,049 INFO : 12% Done
02 Jun 2020 05:39:15,075 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:15,083 INFO : Inserting sp|P02750|A2GL_HUMAN
02 Jun 2020 05:39:15,090 INFO : 13% Done
02 Jun 2020 05:39:15,144 INFO : 14% Done
02 Jun 2020 05:39:15,169 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:15,177 INFO : Inserting sp|P06681|CO2_HUMAN
02 Jun 2020 05:39:15,233 INFO : 15% Done
02 Jun 2020 05:39:15,259 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:15,267 INFO : Inserting sp|P02760|AMBP_HUMAN
02 Jun 2020 05:39:15,274 INFO : 16% Done
02 Jun 2020 05:39:15,324 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:15,333 INFO : Inserting sp|O75636|FCN3_HUMAN
02 Jun 2020 05:39:15,339 INFO : 17% Done
02 Jun 2020 05:39:15,364 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:15,373 INFO : Inserting sp|P05156|CFAI_HUMAN
02 Jun 2020 05:39:15,379 INFO : 18% Done
02 Jun 2020 05:39:15,428 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:15,437 INFO : Inserting sp|P07357|CO8A_HUMAN
02 Jun 2020 05:39:15,488 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:15,496 INFO : Inserting sp|P06276|CHLE_HUMAN
02 Jun 2020 05:39:15,503 INFO : 19% Done
02 Jun 2020 05:39:15,533 INFO : 20% Done
02 Jun 2020 05:39:15,558 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:15,567 INFO : Inserting sp|P10643|CO7_HUMAN
02 Jun 2020 05:39:15,598 INFO : 21% Done
02 Jun 2020 05:39:15,626 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:15,634 INFO : Inserting sp|P19827|ITIH1_HUMAN
02 Jun 2020 05:39:15,640 INFO : 22% Done
02 Jun 2020 05:39:15,715 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:15,723 INFO : Inserting sp|P02743|SAMP_HUMAN
02 Jun 2020 05:39:15,741 INFO : 23% Done
02 Jun 2020 05:39:15,815 INFO : 24% Done
02 Jun 2020 05:39:15,843 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:15,852 INFO : Inserting sp|P05452|TETN_HUMAN
02 Jun 2020 05:39:15,858 INFO : 25% Done
02 Jun 2020 05:39:15,910 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:15,919 INFO : Inserting sp|P02748|CO9_HUMAN
02 Jun 2020 05:39:15,926 INFO : 26% Done
02 Jun 2020 05:39:16,072 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:16,080 INFO : Inserting sp|P01031|CO5_HUMAN
02 Jun 2020 05:39:16,087 INFO : 27% Done
02 Jun 2020 05:39:16,144 INFO : 28% Done
02 Jun 2020 05:39:16,172 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:16,181 INFO : Inserting sp|P00751|CFAB_HUMAN
02 Jun 2020 05:39:16,188 INFO : 29% Done
02 Jun 2020 05:39:16,243 INFO : 30% Done
02 Jun 2020 05:39:16,269 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:16,280 INFO : Inserting sp|P10909|CLUS_HUMAN
02 Jun 2020 05:39:16,380 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:16,390 INFO : Inserting sp|P35858|ALS_HUMAN
02 Jun 2020 05:39:16,397 INFO : 31% Done
02 Jun 2020 05:39:16,428 INFO : 32% Done
02 Jun 2020 05:39:16,454 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:16,464 INFO : Inserting sp|P13671|CO6_HUMAN
02 Jun 2020 05:39:16,495 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:16,505 INFO : Inserting sp|P07996|TSP1_HUMAN
02 Jun 2020 05:39:16,512 INFO : 33% Done
02 Jun 2020 05:39:16,543 INFO : 34% Done
02 Jun 2020 05:39:16,600 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:16,610 INFO : Inserting sp|O14791|APOL1_HUMAN
02 Jun 2020 05:39:16,663 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:16,672 INFO : Inserting sp|P01011|AACT_HUMAN
02 Jun 2020 05:39:16,704 INFO : 35% Done
02 Jun 2020 05:39:16,735 INFO : 36% Done
02 Jun 2020 05:39:16,762 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:16,772 INFO : Inserting sp|P05155|IC1_HUMAN
02 Jun 2020 05:39:16,804 INFO : 37% Done
02 Jun 2020 05:39:16,835 INFO : 38% Done
02 Jun 2020 05:39:16,861 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:16,869 INFO : Inserting sp|P04004|VTNC_HUMAN
02 Jun 2020 05:39:16,924 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:16,933 INFO : Inserting sp|Q96KN2|CNDP1_HUMAN
02 Jun 2020 05:39:16,940 INFO : 39% Done
02 Jun 2020 05:39:16,995 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:17,003 INFO : Inserting sp|P19823|ITIH2_HUMAN
02 Jun 2020 05:39:17,010 INFO : 40% Done
02 Jun 2020 05:39:17,041 INFO : 41% Done
02 Jun 2020 05:39:17,067 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:17,076 INFO : Inserting sp|P05543|THBG_HUMAN
02 Jun 2020 05:39:17,103 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:17,112 INFO : Inserting sp|P36955|PEDF_HUMAN
02 Jun 2020 05:39:17,119 INFO : 42% Done
02 Jun 2020 05:39:17,195 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:17,204 INFO : Inserting sp|P00742|FA10_HUMAN
02 Jun 2020 05:39:17,228 INFO : 43% Done
02 Jun 2020 05:39:17,255 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:17,264 INFO : Inserting sp|P06396|GELS_HUMAN
02 Jun 2020 05:39:17,296 INFO : 44% Done
02 Jun 2020 05:39:17,321 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:17,331 INFO : Inserting sp|Q06033|ITIH3_HUMAN
02 Jun 2020 05:39:17,355 INFO : 45% Done
02 Jun 2020 05:39:17,381 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:17,390 INFO : Inserting sp|P07360|CO8G_HUMAN
02 Jun 2020 05:39:17,396 INFO : 46% Done
02 Jun 2020 05:39:17,470 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:17,478 INFO : Inserting sp|P29622|KAIN_HUMAN
02 Jun 2020 05:39:17,510 INFO : 47% Done
02 Jun 2020 05:39:17,532 INFO : 48% Done
02 Jun 2020 05:39:17,542 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:17,546 INFO : Inserting sp|P02741|CRP_HUMAN
02 Jun 2020 05:39:17,557 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:17,561 INFO : Inserting sp|P05546|HEP2_HUMAN
02 Jun 2020 05:39:17,564 INFO : 49% Done
02 Jun 2020 05:39:17,586 INFO : 50% Done
02 Jun 2020 05:39:17,596 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:17,600 INFO : Inserting sp|P51884|LUM_HUMAN
02 Jun 2020 05:39:17,621 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:17,625 INFO : Inserting sp|P00740|FA9_HUMAN
02 Jun 2020 05:39:17,636 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:17,639 INFO : Inserting sp|P22792|CPN2_HUMAN
02 Jun 2020 05:39:17,642 INFO : 51% Done
02 Jun 2020 05:39:17,655 INFO : 52% Done
02 Jun 2020 05:39:17,676 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:17,733 INFO : 53% Done
02 Jun 2020 05:39:17,737 INFO : Inserting sp|P08603|CFAH_HUMAN
02 Jun 2020 05:39:17,754 INFO : 54% Done
02 Jun 2020 05:39:17,775 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:17,779 INFO : Inserting sp|P35542|SAA4_HUMAN
02 Jun 2020 05:39:17,804 INFO : 55% Done
02 Jun 2020 05:39:17,825 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:17,829 INFO : Inserting sp|P0CF74|LAC6_HUMAN
02 Jun 2020 05:39:17,833 INFO : 56% Done
02 Jun 2020 05:39:17,854 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:17,856 INFO : 57% Done
02 Jun 2020 05:39:17,860 INFO : Inserting sp|P01591|IGJ_HUMAN
02 Jun 2020 05:39:17,873 INFO : 58% Done
02 Jun 2020 05:39:17,893 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:17,900 INFO : Inserting sp|P02652|APOA2_HUMAN
02 Jun 2020 05:39:17,924 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:17,928 INFO : Inserting sp|P02787|TRFE_HUMAN
02 Jun 2020 05:39:17,947 INFO : 59% Done
02 Jun 2020 05:39:17,970 INFO : 60% Done
02 Jun 2020 05:39:17,980 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:17,984 INFO : Inserting sp|P11226|MBL2_HUMAN
02 Jun 2020 05:39:17,987 INFO : 61% Done
02 Jun 2020 05:39:18,008 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:18,011 INFO : Inserting sp|P01625|KV402_HUMAN
02 Jun 2020 05:39:18,014 INFO : 62% Done
02 Jun 2020 05:39:18,132 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:18,142 INFO : Inserting sp|P14151|LYAM1_HUMAN
02 Jun 2020 05:39:18,150 INFO : 63% Done
02 Jun 2020 05:39:18,193 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:18,201 INFO : Inserting sp|P01765|HV304_HUMAN
02 Jun 2020 05:39:18,232 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:18,241 INFO : Inserting sp|P0DJI8|SAA1_HUMAN
02 Jun 2020 05:39:18,249 INFO : 64% Done
02 Jun 2020 05:39:18,275 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:18,284 INFO : Inserting sp|P00924|ENO1_YEAST
02 Jun 2020 05:39:18,291 INFO : 65% Done
02 Jun 2020 05:39:18,347 INFO : 66% Done
02 Jun 2020 05:39:18,441 DEBUG: Total peptides inserted: 5
02 Jun 2020 05:39:18,447 INFO : 67% Done
02 Jun 2020 05:39:18,457 INFO : Inserting sp|P0C0L5|CO4B_HUMAN
02 Jun 2020 05:39:18,494 INFO : 68% Done
02 Jun 2020 05:39:18,547 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:18,556 INFO : Inserting sp|P37802|TAGL2_HUMAN
02 Jun 2020 05:39:18,563 INFO : 69% Done
02 Jun 2020 05:39:18,595 INFO : 70% Done
02 Jun 2020 05:39:18,620 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:18,629 INFO : Inserting sp|P02656|APOC3_HUMAN
02 Jun 2020 05:39:18,717 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:18,725 INFO : Inserting sp|P04278|SHBG_HUMAN
02 Jun 2020 05:39:18,733 INFO : 71% Done
02 Jun 2020 05:39:18,765 INFO : 72% Done
02 Jun 2020 05:39:18,792 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:18,801 INFO : Inserting sp|P00738|HPT_HUMAN
02 Jun 2020 05:39:18,833 INFO : 73% Done
02 Jun 2020 05:39:18,867 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:18,876 INFO : Inserting sp|P02763|A1AG1_HUMAN
02 Jun 2020 05:39:18,883 INFO : 74% Done
02 Jun 2020 05:39:18,970 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:18,979 INFO : Inserting sp|P00739|HPTR_HUMAN
02 Jun 2020 05:39:18,987 INFO : 75% Done
02 Jun 2020 05:39:19,013 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:19,022 INFO : Inserting sp|P01876|IGHA1_HUMAN
02 Jun 2020 05:39:19,054 INFO : 76% Done
02 Jun 2020 05:39:19,085 INFO : 77% Done
02 Jun 2020 05:39:19,111 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:19,120 INFO : Inserting sp|P20851|C4BPB_HUMAN
02 Jun 2020 05:39:19,153 INFO : 78% Done
02 Jun 2020 05:39:19,179 DEBUG: Total peptides inserted: 2
02 Jun 2020 05:39:19,188 INFO : Inserting sp|P04196|HRG_HUMAN
02 Jun 2020 05:39:19,246 INFO : 79% Done
02 Jun 2020 05:39:19,291 DEBUG: Total peptides inserted: 3
02 Jun 2020 05:39:19,301 INFO : Inserting sp|P20742|PZP_HUMAN
02 Jun 2020 05:39:19,327 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:19,336 INFO : Inserting sp|P36980|FHR2_HUMAN
02 Jun 2020 05:39:19,343 INFO : 80% Done
02 Jun 2020 05:39:19,368 DEBUG: Total peptides inserted: 1
02 Jun 2020 05:39:19,370 INFO : Done parsing Skyline document.
02 Jun 2020 05:39:19,375 INFO : Calculating fold changes
02 Jun 2020 05:39:19,376 DEBUG: Calculating fold change for group comparison NP, 1 of 1
02 Jun 2020 05:39:22,870 INFO : 98% Done
02 Jun 2020 05:39:22,871 INFO : Done calculating fold changes.
02 Jun 2020 05:39:22,875 INFO : Creating and populating temp tables for Proportion values
02 Jun 2020 05:39:22,969 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
02 Jun 2020 05:39:23,128 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
02 Jun 2020 05:39:23,239 INFO : Cleaning up temp tables
02 Jun 2020 05:39:23,787 INFO : Completed import of Skyline document from Instrumental set-up QC_2020-06-02_14-10-53.sky.zip
02 Jun 2020 05:39:23,795 INFO : 100% Done
02 Jun 2020 05:39:23,938 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'