25 May 2020 20:10:23,877 INFO : Copying experiment "Antibody RING-Mediated Destruction (ARMeD) of endogenous proteins" from folder /U of Dundee - Hay Lab/NEDP1_ARMeD_knockdown/Share to /Panorama Public/2019/U of Dundee Hay Lab - NEDP1_ARMeD_knockdown
25 May 2020 20:10:23,877 INFO : =======================================
25 May 2020 20:10:24,021 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
25 May 2020 20:10:24,021 INFO : 
25 May 2020 20:10:24,021 INFO : Exporting experiment.
25 May 2020 20:14:13,911 INFO : 
25 May 2020 20:14:13,911 INFO : Experiment export completed successfully.
25 May 2020 20:14:13,911 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
25 May 2020 20:14:13,992 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
25 May 2020 20:14:13,992 INFO : 
25 May 2020 20:14:13,993 INFO : Importing experiment.
25 May 2020 20:14:14,016 INFO : Loading folder properties (folder type, settings and active modules)
25 May 2020 20:14:14,259 INFO : Done importing folder properties (folder type, settings and active modules)
25 May 2020 20:14:14,265 INFO : Loading etl definitions
25 May 2020 20:14:14,270 INFO : Loading wikis
25 May 2020 20:14:14,301 INFO : 0 wikis imported
25 May 2020 20:14:14,301 INFO : Done importing wikis
25 May 2020 20:14:14,301 INFO : Starting to copy files
25 May 2020 20:16:15,808 INFO : 43 files copied, now copying 20190328_DD_90m_PRM_top12_12uL_Nedp1_iRT_18.raw
25 May 2020 20:17:29,944 INFO : 58 files copied, now copying 20190731_10.skyd
25 May 2020 20:17:43,349 INFO : Copied 64 files
25 May 2020 20:17:43,350 INFO : Ensuring exp.data rows exist for imported files
25 May 2020 20:17:45,031 INFO : Loading xar
25 May 2020 20:17:53,627 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-7076:TargetedMS.ImportSkyZip'
25 May 2020 20:17:53,632 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-7076:TargetedMS.ImportSkyZip.Core'
25 May 2020 20:17:53,638 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-7076:TargetedMS.ImportSkyZip.Output'
25 May 2020 20:17:53,638 DEBUG: Protocol import complete
25 May 2020 20:17:53,687 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-7076:Antibody+RING-Mediated+Destruction+%28ARMeD%29+of+endogenous+proteins'
25 May 2020 20:17:53,688 DEBUG: Experiment/Run group import complete
25 May 2020 20:17:53,757 DEBUG: Protocol action set import complete
25 May 2020 20:17:53,804 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7076:TargetedMS.ImportSkyZip'
25 May 2020 20:17:53,878 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-7076:50bc81ac-dfa2-1037-94ab-3013bb9b2866'
25 May 2020 20:17:53,888 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-7076:50bc815f-dfa2-1037-94ab-3013bb9b2866'
25 May 2020 20:17:53,888 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7076:TargetedMS.ImportSkyZip.Core'
25 May 2020 20:17:53,895 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7076:TargetedMS.ImportSkyZip.Output'
25 May 2020 20:17:53,896 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-7076:50bc824f-dfa2-1037-94ab-3013bb9b2866'
25 May 2020 20:17:53,898 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Dundee%20Hay%20Lab%20-%20NEDP1_ARMeD_knockdown_5eca8ef6-8127-1038-9976-3013bb9ba8d4/_temp__2020-05-25_20-10-23/export/xar/experiments_and_runs.xar.exploded/Run76441/ARMeD_NEDP1_2019-11-02_13-41-15/ARMeD_NEDP1.skyd into the system
25 May 2020 20:17:53,899 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Dundee%20Hay%20Lab%20-%20NEDP1_ARMeD_knockdown_5eca8ef6-8127-1038-9976-3013bb9ba8d4/_temp__2020-05-25_20-10-23/export/xar/experiments_and_runs.xar.exploded/Run76441/ARMeD_NEDP1_2019-11-02_13-41-15/ARMeD_NEDP1.skyd into the system
25 May 2020 20:17:53,899 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Dundee%20Hay%20Lab%20-%20NEDP1_ARMeD_knockdown_5eca8ef6-8127-1038-9976-3013bb9ba8d4/_temp__2020-05-25_20-10-23/export/xar/experiments_and_runs.xar.exploded/Run76441/ARMeD_NEDP1_2019-11-02_13-41-15.sky.zip into the system
25 May 2020 20:17:53,901 INFO : Starting import from ARMeD_NEDP1_2019-11-02_13-41-15.sky.zip
25 May 2020 20:17:53,908 INFO : Starting to import Skyline document from ARMeD_NEDP1_2019-11-02_13-41-15.sky.zip
25 May 2020 20:17:53,915 INFO : Expanding HUMANplusTevNedp1_Tryp_1max.protdb
25 May 2020 20:17:58,584 INFO : Expanding 20190731_10.blib
25 May 2020 20:17:58,606 INFO : Expanding 20190731_10.redundant.blib
25 May 2020 20:17:58,644 INFO : Expanding ARMeD_NEDP1.skyd
25 May 2020 20:17:58,789 INFO : Expanding ARMeD_NEDP1.sky.view
25 May 2020 20:17:58,789 INFO : Expanding ARMeD_NEDP1.sky
25 May 2020 20:17:58,827 WARN : The version of this Skyline document is 19.1. This is newer than the highest supported version 4.1
25 May 2020 20:18:03,836 INFO : Inserting Library Peptides
25 May 2020 20:18:04,136 INFO : 1% Done
25 May 2020 20:18:04,585 INFO : 2% Done
25 May 2020 20:18:05,040 INFO : 3% Done
25 May 2020 20:18:05,252 INFO : 4% Done
25 May 2020 20:18:05,724 INFO : 5% Done
25 May 2020 20:18:06,228 INFO : 6% Done
25 May 2020 20:18:06,471 INFO : 7% Done
25 May 2020 20:18:06,987 INFO : 8% Done
25 May 2020 20:18:07,257 INFO : 9% Done
25 May 2020 20:18:07,748 INFO : 10% Done
25 May 2020 20:18:08,072 INFO : 11% Done
25 May 2020 20:18:09,069 INFO : 13% Done
25 May 2020 20:18:09,764 INFO : 14% Done
25 May 2020 20:18:10,288 INFO : 15% Done
25 May 2020 20:18:10,532 INFO : 16% Done
25 May 2020 20:18:10,923 INFO : 17% Done
25 May 2020 20:18:11,226 INFO : 18% Done
25 May 2020 20:18:11,489 INFO : 19% Done
25 May 2020 20:18:12,168 INFO : 21% Done
25 May 2020 20:18:12,716 INFO : 22% Done
25 May 2020 20:18:13,113 INFO : 23% Done
25 May 2020 20:18:13,294 INFO : 24% Done
25 May 2020 20:18:13,509 INFO : 25% Done
25 May 2020 20:18:14,268 INFO : 26% Done
25 May 2020 20:18:14,562 INFO : 27% Done
25 May 2020 20:18:14,857 INFO : 28% Done
25 May 2020 20:18:15,319 INFO : 29% Done
25 May 2020 20:18:15,511 INFO : 30% Done
25 May 2020 20:18:16,142 INFO : 31% Done
25 May 2020 20:18:16,383 INFO : 32% Done
25 May 2020 20:18:16,604 DEBUG: Inserted 50 peptides
25 May 2020 20:18:16,863 INFO : 33% Done
25 May 2020 20:18:17,197 INFO : 34% Done
25 May 2020 20:18:17,686 INFO : 35% Done
25 May 2020 20:18:18,159 INFO : 36% Done
25 May 2020 20:18:18,245 INFO : 37% Done
25 May 2020 20:18:18,698 INFO : 38% Done
25 May 2020 20:18:19,220 INFO : 39% Done
25 May 2020 20:18:19,526 INFO : 40% Done
25 May 2020 20:18:19,763 INFO : 42% Done
25 May 2020 20:18:20,531 INFO : 43% Done
25 May 2020 20:18:20,818 INFO : 44% Done
25 May 2020 20:18:21,504 INFO : 45% Done
25 May 2020 20:18:21,843 INFO : 46% Done
25 May 2020 20:18:22,171 INFO : 47% Done
25 May 2020 20:18:22,729 INFO : 48% Done
25 May 2020 20:18:23,020 DEBUG: Total peptides inserted: 72
25 May 2020 20:18:23,195 INFO : Inserting >TEV_Cleaved_NEDP1 
25 May 2020 20:18:23,269 INFO : 49% Done
25 May 2020 20:18:23,506 DEBUG: Total peptides inserted: 2
25 May 2020 20:18:23,549 INFO : Inserting LGGNEQVTR
25 May 2020 20:18:23,695 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:23,736 INFO : Inserting YILAGVENSK
25 May 2020 20:18:23,810 INFO : 50% Done
25 May 2020 20:18:23,958 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:23,998 INFO : Inserting GTFIIDPGGVIR
25 May 2020 20:18:24,232 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:24,237 INFO : Inserting GTFIIDPAAVIR
25 May 2020 20:18:24,241 INFO : 51% Done
25 May 2020 20:18:24,423 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:24,461 INFO : Inserting GAGSSEPVTGLDAK
25 May 2020 20:18:24,480 INFO : 52% Done
25 May 2020 20:18:24,660 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:24,689 INFO : Inserting TPVISGGPYEYR
25 May 2020 20:18:24,921 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:24,958 INFO : Inserting VEATFGVDESNAK
25 May 2020 20:18:24,983 INFO : 53% Done
25 May 2020 20:18:25,206 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:25,238 INFO : Inserting TPVITGAPYEYR
25 May 2020 20:18:25,242 INFO : 54% Done
25 May 2020 20:18:25,474 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:25,495 INFO : Inserting DGLDAASYYAPVR
25 May 2020 20:18:25,517 INFO : 55% Done
25 May 2020 20:18:25,795 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:25,860 INFO : Inserting ADVTPADFSEWSK
25 May 2020 20:18:25,893 INFO : 56% Done
25 May 2020 20:18:26,121 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:26,207 INFO : Inserting LFLQFGAQGSPFLK
25 May 2020 20:18:26,446 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:26,522 INFO : Inserting GDKLAFVEEK
25 May 2020 20:18:26,535 INFO : 57% Done
25 May 2020 20:18:26,649 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:26,670 INFO : Inserting KGDKLAFVEEK
25 May 2020 20:18:26,798 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:26,812 INFO : Inserting LAFVEEK
25 May 2020 20:18:26,935 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:26,941 INFO : Inserting LEAFLGR
25 May 2020 20:18:26,953 INFO : 58% Done
25 May 2020 20:18:27,046 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:27,063 INFO : Inserting QVAEKLEAFLGR
25 May 2020 20:18:27,279 INFO : 59% Done
25 May 2020 20:18:27,393 DEBUG: Total peptides inserted: 2
25 May 2020 20:18:27,399 INFO : Inserting QVAEKLEAFLGRK
25 May 2020 20:18:27,505 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:27,525 INFO : Inserting IGPSILNSDLANLGAECLR
25 May 2020 20:18:27,552 INFO : 61% Done
25 May 2020 20:18:28,095 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:28,110 INFO : Inserting EILGTAQSVGCNVDGR
25 May 2020 20:18:28,344 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:28,377 INFO : Inserting AMGIMNSFVNDIFER
25 May 2020 20:18:28,391 INFO : 62% Done
25 May 2020 20:18:28,620 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:28,625 INFO : Inserting TIAECLADELINAAK
25 May 2020 20:18:28,648 INFO : 63% Done
25 May 2020 20:18:29,080 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:29,307 INFO : Inserting DPENFPFVVLGNK
25 May 2020 20:18:29,320 INFO : 64% Done
25 May 2020 20:18:29,577 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:29,594 INFO : Inserting GVIINTASVAAFEGQVGQAAYSASK
25 May 2020 20:18:29,600 INFO : 65% Done
25 May 2020 20:18:29,878 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:29,917 INFO : Inserting NLGSINTELQDVQR
25 May 2020 20:18:30,140 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:30,145 INFO : Inserting HGLLVPNNTTDQELQHIR
25 May 2020 20:18:30,164 INFO : 66% Done
25 May 2020 20:18:30,442 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:30,542 INFO : Inserting SNVSDAVAQSTR
25 May 2020 20:18:30,578 INFO : 67% Done
25 May 2020 20:18:30,769 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:30,775 INFO : Inserting ALLANALTSALR
25 May 2020 20:18:30,986 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:31,019 INFO : Inserting AEAGAGSATEFQFR
25 May 2020 20:18:31,023 INFO : 68% Done
25 May 2020 20:18:31,225 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:31,259 INFO : Inserting ISSLLEEQFQQGK
25 May 2020 20:18:31,304 INFO : 69% Done
25 May 2020 20:18:31,495 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:31,501 INFO : Inserting PPYTVVYFPVR
25 May 2020 20:18:31,728 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:31,798 INFO : Inserting DAYSGGAVNLYHVR
25 May 2020 20:18:31,815 INFO : 70% Done
25 May 2020 20:18:32,028 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:32,067 INFO : Inserting FSPLTTNLINLLAENGR
25 May 2020 20:18:32,105 INFO : 72% Done
25 May 2020 20:18:32,634 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:32,652 INFO : Inserting VEDVVVSDECR
25 May 2020 20:18:32,847 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:32,853 INFO : Inserting TQIDHYVGIAR
25 May 2020 20:18:32,906 INFO : 73% Done
25 May 2020 20:18:33,119 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:33,140 INFO : Inserting LYTLVLTDPDAPSR
25 May 2020 20:18:33,396 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:33,422 INFO : Inserting STESLQANVQR
25 May 2020 20:18:33,435 INFO : 74% Done
25 May 2020 20:18:33,604 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:33,609 INFO : Inserting RAIYQATYR
25 May 2020 20:18:33,833 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:33,894 INFO : Inserting TITLEVEPSDTIENVK
25 May 2020 20:18:34,134 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:34,140 INFO : Inserting TSIEDQDELSSLLQVPLVAGTVNR
25 May 2020 20:18:34,174 INFO : 76% Done
25 May 2020 20:18:34,713 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:34,718 INFO : Inserting VTIAQGGVLPNIQAVLLPK
25 May 2020 20:18:34,735 INFO : 77% Done
25 May 2020 20:18:35,046 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:35,054 INFO : Inserting DYGVLLEGSGLALR
25 May 2020 20:18:35,293 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:35,300 INFO : Inserting SLGSVQAPSYGARPVSSAASVYAGAGGSGSR
25 May 2020 20:18:35,316 INFO : 78% Done
25 May 2020 20:18:35,583 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:35,606 INFO : Inserting SVTEQGAELSNEER
25 May 2020 20:18:35,654 INFO : 79% Done
25 May 2020 20:18:35,835 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:35,897 INFO : Inserting HVVQSISTQQEKETIAK
25 May 2020 20:18:35,902 INFO : 80% Done
25 May 2020 20:18:36,180 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:36,185 INFO : Inserting AQIFANTVDNAR
25 May 2020 20:18:36,359 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:36,388 INFO : Inserting VTVAGLAGKDPVQCSR
25 May 2020 20:18:36,393 INFO : 81% Done
25 May 2020 20:18:37,341 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:37,400 INFO : Inserting LTFSCLGGSDNFK
25 May 2020 20:18:37,453 INFO : 82% Done
25 May 2020 20:18:37,657 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:37,680 INFO : Inserting DAGQISGLNVLR
25 May 2020 20:18:37,866 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:37,912 INFO : Inserting SNLNSLDEQEGVK
25 May 2020 20:18:37,916 INFO : 83% Done
25 May 2020 20:18:38,097 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:38,118 INFO : Inserting VPTANVSVVDLTCR
25 May 2020 20:18:38,358 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:38,463 INFO : Inserting ESTLHLVLR
25 May 2020 20:18:38,566 INFO : 84% Done
25 May 2020 20:18:38,736 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:38,741 INFO : Inserting GVVDSEDLPLNISR
25 May 2020 20:18:38,745 INFO : 85% Done
25 May 2020 20:18:38,956 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:38,963 INFO : Inserting GAVYSFDPVGSYQR
25 May 2020 20:18:39,207 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:39,213 INFO : Inserting VLLESEQFLTELTR
25 May 2020 20:18:39,218 INFO : 86% Done
25 May 2020 20:18:39,462 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:39,479 INFO : Inserting ALYEQNQSDVNEAK
25 May 2020 20:18:39,500 INFO : 87% Done
25 May 2020 20:18:39,692 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:39,746 INFO : Inserting LVAIVDVIDQNR
25 May 2020 20:18:39,930 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:39,984 INFO : Inserting EAINVEQAFQTIAR
25 May 2020 20:18:40,039 INFO : 88% Done
25 May 2020 20:18:40,262 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:40,313 INFO : Inserting LYIGLAGLATDVQTVAQR
25 May 2020 20:18:40,317 INFO : 89% Done
25 May 2020 20:18:40,597 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:40,621 INFO : Inserting IIDVVYNASNNELVR
25 May 2020 20:18:40,848 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:40,871 INFO : Inserting YQQGDFGYCPR
25 May 2020 20:18:40,902 INFO : 90% Done
25 May 2020 20:18:41,061 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:41,068 INFO : Inserting PVSSAASVYAGAGGSGSR
25 May 2020 20:18:41,084 INFO : 91% Done
25 May 2020 20:18:41,388 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:41,393 INFO : Inserting AIWNVINWENVTER
25 May 2020 20:18:41,625 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:41,631 INFO : Inserting TTTGSYIANR
25 May 2020 20:18:41,635 INFO : 92% Done
25 May 2020 20:18:41,772 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:41,801 INFO : Inserting GVDLTEPTQPTR
25 May 2020 20:18:42,006 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:42,027 INFO : Inserting CLDEFPNLK
25 May 2020 20:18:42,030 INFO : 93% Done
25 May 2020 20:18:42,189 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:42,211 INFO : Inserting DLTTAGAVTQCYR
25 May 2020 20:18:42,230 INFO : 94% Done
25 May 2020 20:18:42,443 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:42,493 INFO : Inserting SAYNVYVAER
25 May 2020 20:18:42,727 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:42,807 INFO : Inserting SFPDFPTPGVVFR
25 May 2020 20:18:42,811 INFO : 95% Done
25 May 2020 20:18:43,014 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:43,019 INFO : Inserting ISLPLPNFSSLNLR
25 May 2020 20:18:43,043 INFO : 96% Done
25 May 2020 20:18:43,255 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:43,260 INFO : Inserting CEGINISGNFYR
25 May 2020 20:18:43,522 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:43,532 INFO : Inserting FNVWDTAGQEK
25 May 2020 20:18:43,576 INFO : 97% Done
25 May 2020 20:18:43,744 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:43,769 INFO : Inserting ISGLIYEETR
25 May 2020 20:18:43,919 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:43,923 INFO : Inserting VQNATLAVANITNADSATR
25 May 2020 20:18:43,928 INFO : 98% Done
25 May 2020 20:18:44,206 DEBUG: Total peptides inserted: 1
25 May 2020 20:18:44,206 INFO : Done parsing Skyline document.
25 May 2020 20:18:44,209 INFO : Creating and populating temp tables for Proportion values
25 May 2020 20:18:44,470 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
25 May 2020 20:18:45,155 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
25 May 2020 20:18:45,940 INFO : Cleaning up temp tables
25 May 2020 20:18:46,683 INFO : Completed import of Skyline document from ARMeD_NEDP1_2019-11-02_13-41-15.sky.zip
25 May 2020 20:18:46,686 INFO : 100% Done
25 May 2020 20:18:46,699 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Dundee%20Hay%20Lab%20-%20NEDP1_ARMeD_knockdown_5eca8ef6-8127-1038-9976-3013bb9ba8d4/_temp__2020-05-25_20-10-23/export/xar/experiments_and_runs.xar.exploded/Run76441/ARMeD_NEDP1_2019-11-02_13-41-15.sky.zip into the system
25 May 2020 20:18:46,736 INFO : Done importing xar
25 May 2020 20:18:46,743 INFO : Loading pages and webpart properties
25 May 2020 20:18:46,993 INFO : Done importing pages and webpart properties
25 May 2020 20:18:46,994 INFO : 
25 May 2020 20:18:46,994 INFO : Experiment import completed successfully.
25 May 2020 20:18:46,994 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
25 May 2020 20:18:47,117 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
25 May 2020 20:18:47,117 INFO : 
25 May 2020 20:18:47,117 INFO : Finishing up experiment copy.
25 May 2020 20:18:47,120 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
25 May 2020 20:18:47,276 INFO : Updating access URL to point to the new copy of the data.
25 May 2020 20:18:47,350 INFO : Setting the 'copied' timestamp on the JournalExperiment table.
25 May 2020 20:18:47,369 INFO : Removing copy permissions given to journal.
25 May 2020 20:18:47,442 INFO : Adding read permissions to all users that are folder admins in the source container.
25 May 2020 20:18:47,461 INFO : Setting the TargetedMS folder type to 'Experimental Data'
25 May 2020 20:18:47,477 INFO : Updating the 'Raw Data' tab configuration
25 May 2020 20:18:47,485 INFO : Updating dataFileUrls for run ARMeD_NEDP1_2019-11-02_13-41-15.sky.zip; targetedms run ID 88035
25 May 2020 20:18:47,485 INFO : Updating dataFileUrl...
25 May 2020 20:18:47,485 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Dundee%20Hay%20Lab%20-%20NEDP1_ARMeD_knockdown_5eca8ef6-8127-1038-9976-3013bb9ba8d4/_temp__2020-05-25_20-10-23/export/xar/experiments_and_runs.xar.exploded/Run76441/ARMeD_NEDP1_2019-11-02_13-41-15.sky.zip
25 May 2020 20:18:47,486 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/U%20of%20Dundee%20Hay%20Lab%20-%20NEDP1_ARMeD_knockdown/@files/ARMeD_NEDP1_2019-11-02_13-41-15.sky.zip
25 May 2020 20:18:47,492 INFO : Updating dataFileUrl...
25 May 2020 20:18:47,492 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Dundee%20Hay%20Lab%20-%20NEDP1_ARMeD_knockdown_5eca8ef6-8127-1038-9976-3013bb9ba8d4/_temp__2020-05-25_20-10-23/export/xar/experiments_and_runs.xar.exploded/Run76441/ARMeD_NEDP1_2019-11-02_13-41-15/ARMeD_NEDP1.skyd
25 May 2020 20:18:47,493 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/U%20of%20Dundee%20Hay%20Lab%20-%20NEDP1_ARMeD_knockdown/@files/ARMeD_NEDP1_2019-11-02_13-41-15/ARMeD_NEDP1.skyd
25 May 2020 20:18:47,512 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'