Copying experiment: Targeted MRM assay Complement System for Complement deficiencies: /Panorama Public/2020/Radboud University Medical Center Translational Metabolic Lab - Targeted MRM assay Complement System for Complement deficiencies

Copying experiment: Targeted MRM assay Complement System for Complement deficiencies

Radboud University Medical Center Translational Metabolic Lab - Targeted MRM assay Complement System for Complement deficiencies

Job Status

Created:

2020-11-07 14:27:27

Modified:

2020-11-07 14:54:08

Email:

vsharma@uw.edu

Status:

COMPLETE

Info:

Description:

Copying experiment: Targeted MRM assay Complement System for Complement deficiencies

File Path:

/data/labkey/files/Panorama Public/2020/Radboud University Medical Center Translational Metabolic Lab - Targeted MRM assay Complement System for Complement deficiencies/@files/Experiment_1107.log

Files:

Experiment_1107.log

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07 Nov 2020 14:27:27,673 INFO : Copying experiment "Targeted MRM assay Complement System for Complement deficiencies" from folder /Radboud University Medical Center - Translational Metabolic Lab/Targeted MRM assay Complement System for Complement deficiencies to /Panorama Public/2020/Radboud University Medical Center Translational Metabolic Lab - Targeted MRM assay Complement System for Complement deficiencies

07 Nov 2020 14:27:27,674 INFO : =======================================

07 Nov 2020 14:27:27,894 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'

07 Nov 2020 14:27:27,895 INFO :

07 Nov 2020 14:27:27,895 INFO : Exporting experiment.

07 Nov 2020 14:34:01,559 INFO :

07 Nov 2020 14:34:01,559 INFO : Experiment export completed successfully.

07 Nov 2020 14:34:01,559 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'

07 Nov 2020 14:34:01,595 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'

07 Nov 2020 14:34:01,595 INFO :

07 Nov 2020 14:34:01,595 INFO : Importing experiment.

07 Nov 2020 14:34:01,672 INFO : Loading folder properties (folder type, settings and active modules)

07 Nov 2020 14:34:01,866 INFO : Done importing folder properties (folder type, settings and active modules)

07 Nov 2020 14:34:01,869 INFO : Loading etl definitions

07 Nov 2020 14:34:01,871 INFO : Loading wikis

07 Nov 2020 14:34:01,965 INFO : 0 wikis imported

07 Nov 2020 14:34:01,965 INFO : Done importing wikis

07 Nov 2020 14:34:01,966 INFO : Starting to copy files

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07 Nov 2020 14:45:32,902 INFO : Copied 38240 files

07 Nov 2020 14:45:32,902 INFO : Ensuring exp.data rows exist for imported files

07 Nov 2020 14:53:17,237 INFO : Loading xar

07 Nov 2020 14:53:17,898 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-7832:TargetedMS.ImportSkyZip'

07 Nov 2020 14:53:17,903 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-7832:TargetedMS.ImportSkyZip.Core'

07 Nov 2020 14:53:17,907 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-7832:TargetedMS.ImportSkyZip.Output'

07 Nov 2020 14:53:17,908 DEBUG: Protocol import complete

07 Nov 2020 14:53:17,940 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-7832:Targeted+MRM+assay+Complement+System+for+Complement+deficiencies'

07 Nov 2020 14:53:17,941 DEBUG: Experiment/Run group import complete

07 Nov 2020 14:53:17,996 DEBUG: Protocol action set import complete

07 Nov 2020 14:53:18,019 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7832:TargetedMS.ImportSkyZip'

07 Nov 2020 14:53:18,061 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-7832:b19727d9-0037-1039-927b-3013bb9ba7ed'

07 Nov 2020 14:53:18,068 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-7832:b197211b-0037-1039-927b-3013bb9ba7ed'

07 Nov 2020 14:53:18,068 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7832:TargetedMS.ImportSkyZip.Core'

07 Nov 2020 14:53:18,074 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7832:TargetedMS.ImportSkyZip.Output'

07 Nov 2020 14:53:18,075 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-7832:b1972912-0037-1039-927b-3013bb9ba7ed'

07 Nov 2020 14:53:18,089 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7832:TargetedMS.ImportSkyZip'

07 Nov 2020 14:53:18,099 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-7832:b19726d1-0037-1039-927b-3013bb9ba7ed'

07 Nov 2020 14:53:18,106 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-7832:b1971fef-0037-1039-927b-3013bb9ba7ed'

07 Nov 2020 14:53:18,106 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7832:TargetedMS.ImportSkyZip.Core'

07 Nov 2020 14:53:18,111 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7832:TargetedMS.ImportSkyZip.Output'

07 Nov 2020 14:53:18,112 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-7832:b19727b1-0037-1039-927b-3013bb9ba7ed'

07 Nov 2020 14:53:18,125 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7832:TargetedMS.ImportSkyZip'

07 Nov 2020 14:53:18,134 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-7832:b19725a2-0037-1039-927b-3013bb9ba7ed'

07 Nov 2020 14:53:18,141 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-7832:84e6685a-0036-1039-927b-3013bb9ba7ed'

07 Nov 2020 14:53:18,141 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7832:TargetedMS.ImportSkyZip.Core'

07 Nov 2020 14:53:18,145 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7832:TargetedMS.ImportSkyZip.Output'

07 Nov 2020 14:53:18,146 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-7832:b19726a9-0037-1039-927b-3013bb9ba7ed'

07 Nov 2020 14:53:18,159 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7832:TargetedMS.ImportSkyZip'

07 Nov 2020 14:53:18,168 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-7832:b1972410-0037-1039-927b-3013bb9ba7ed'

07 Nov 2020 14:53:18,174 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-7832:84e668f3-0036-1039-927b-3013bb9ba7ed'

07 Nov 2020 14:53:18,174 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7832:TargetedMS.ImportSkyZip.Core'

07 Nov 2020 14:53:18,178 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7832:TargetedMS.ImportSkyZip.Output'

07 Nov 2020 14:53:18,179 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-7832:b197251b-0037-1039-927b-3013bb9ba7ed'

07 Nov 2020 14:53:18,185 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Radboud%20University%20Medical%20Center%20Translational%20Metabolic%20Lab%20-%20Targeted%20MRM%20assay%20Complement%20System%20for%20Complement%20deficiencies_92046f56-0375-1039-927b-3013bb9ba7ed/_temp__2020-11-07_14-27-27/export/xar/experiments_and_runs.xar.exploded/Run94335/Panorama_patient_mox-method/2020-04-29_New%20import%20patients%20only_mox.skyd into the system

07 Nov 2020 14:53:18,187 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Radboud%20University%20Medical%20Center%20Translational%20Metabolic%20Lab%20-%20Targeted%20MRM%20assay%20Complement%20System%20for%20Complement%20deficiencies_92046f56-0375-1039-927b-3013bb9ba7ed/_temp__2020-11-07_14-27-27/export/xar/experiments_and_runs.xar.exploded/Run94335/Panorama_patient_mox-method/2020-04-29_New%20import%20patients%20only_mox.skyd into the system

07 Nov 2020 14:53:18,187 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Radboud%20University%20Medical%20Center%20Translational%20Metabolic%20Lab%20-%20Targeted%20MRM%20assay%20Complement%20System%20for%20Complement%20deficiencies_92046f56-0375-1039-927b-3013bb9ba7ed/_temp__2020-11-07_14-27-27/export/xar/experiments_and_runs.xar.exploded/Run94335/Panorama_patient_mox-method.sky.zip into the system

07 Nov 2020 14:53:18,190 INFO : Starting import from Panorama_patient_mox-method.sky.zip

07 Nov 2020 14:53:18,196 INFO : Starting to import Skyline document from Panorama_patient_mox-method.sky.zip

07 Nov 2020 14:53:18,200 INFO : Expanding 2020-04-29_New import patients only_mox.skyd

07 Nov 2020 14:53:18,329 INFO : Expanding 2020-04-29_New import patients only_mox.sky.view

07 Nov 2020 14:53:18,330 INFO : Expanding 2020-04-29_New import patients only_mox.sky

07 Nov 2020 14:53:18,389 WARN : The version of this Skyline document is 20.1. This is newer than the highest supported version 4.1

07 Nov 2020 14:53:18,399 INFO : 1% Done

07 Nov 2020 14:53:19,078 INFO : Inserting sp|P02745|C1QA_HUMAN

07 Nov 2020 14:53:19,492 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:19,544 INFO : Inserting sp|P02746|C1QB_HUMAN

07 Nov 2020 14:53:19,577 INFO : 4% Done

07 Nov 2020 14:53:20,419 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:20,440 INFO : Inserting sp|P02747|C1QC_HUMAN

07 Nov 2020 14:53:20,493 INFO : 9% Done

07 Nov 2020 14:53:20,946 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:21,005 INFO : Inserting sp|P00736|C1R_HUMAN

07 Nov 2020 14:53:21,040 INFO : 13% Done

07 Nov 2020 14:53:21,518 INFO : 17% Done

07 Nov 2020 14:53:21,874 DEBUG: Total peptides inserted: 2

07 Nov 2020 14:53:21,904 INFO : Inserting sp|P09871|C1S_HUMAN

07 Nov 2020 14:53:21,945 INFO : 20% Done

07 Nov 2020 14:53:22,441 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:22,515 INFO : Inserting sp|P06681|CO2_HUMAN

07 Nov 2020 14:53:22,576 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:22,652 INFO : Inserting sp|P01024|CO3_HUMAN

07 Nov 2020 14:53:22,682 INFO : 24% Done

07 Nov 2020 14:53:23,131 INFO : 27% Done

07 Nov 2020 14:53:23,522 DEBUG: Total peptides inserted: 2

07 Nov 2020 14:53:23,589 INFO : Inserting sp|P0C0L5|CO4_HUMAN

07 Nov 2020 14:53:23,645 INFO : 31% Done

07 Nov 2020 14:53:23,987 DEBUG: Total peptides inserted: 2

07 Nov 2020 14:53:24,019 INFO : Inserting sp|P01031|CO5_HUMAN

07 Nov 2020 14:53:24,056 INFO : 35% Done

07 Nov 2020 14:53:24,409 INFO : 39% Done

07 Nov 2020 14:53:24,769 DEBUG: Total peptides inserted: 2

07 Nov 2020 14:53:24,832 INFO : Inserting sp|P13671|CO6_HUMAN

07 Nov 2020 14:53:24,883 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:24,936 INFO : Inserting sp|P10643|CO7_HUMAN

07 Nov 2020 14:53:24,993 INFO : 43% Done

07 Nov 2020 14:53:25,689 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:25,793 INFO : Inserting sp|P07357|CO8A_HUMAN

07 Nov 2020 14:53:25,910 INFO : 47% Done

07 Nov 2020 14:53:26,746 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:26,798 INFO : Inserting sp|P07358|CO8B_HUMAN

07 Nov 2020 14:53:26,845 INFO : 50% Done

07 Nov 2020 14:53:27,469 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:27,489 INFO : Inserting sp|P07360|CO8G_HUMAN

07 Nov 2020 14:53:27,526 INFO : 51% Done

07 Nov 2020 14:53:27,601 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:27,614 INFO : Inserting sp|P02748|CO9_HUMAN

07 Nov 2020 14:53:27,652 INFO : 55% Done

07 Nov 2020 14:53:28,416 INFO : 59% Done

07 Nov 2020 14:53:30,014 DEBUG: Total peptides inserted: 2

07 Nov 2020 14:53:30,082 INFO : Inserting sp|P00751|CFAB_HUMAN

07 Nov 2020 14:53:30,177 INFO : 63% Done

07 Nov 2020 14:53:30,958 DEBUG: Total peptides inserted: 2

07 Nov 2020 14:53:31,092 INFO : Inserting sp|P00746|CFAD_HUMAN

07 Nov 2020 14:53:31,165 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:31,311 INFO : Inserting sp|P08603|CFAH_HUMAN

07 Nov 2020 14:53:31,529 DEBUG: Total peptides inserted: 3

07 Nov 2020 14:53:31,579 INFO : Inserting sp|P05156|CFAI_HUMAN

07 Nov 2020 14:53:31,655 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:31,704 INFO : Inserting sp|P02741|CRP_HUMAN

07 Nov 2020 14:53:31,722 INFO : 66% Done

07 Nov 2020 14:53:32,421 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:32,500 INFO : Inserting sp|P48740|MASP1_HUMAN

07 Nov 2020 14:53:32,562 INFO : 67% Done

07 Nov 2020 14:53:32,605 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:32,687 INFO : Inserting sp|P48740-2|MASP3_HUMAN

07 Nov 2020 14:53:32,711 INFO : 71% Done

07 Nov 2020 14:53:33,630 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:33,759 INFO : Inserting sp|P11226|MBL2_HUMAN

07 Nov 2020 14:53:33,809 INFO : 74% Done

07 Nov 2020 14:53:34,407 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:34,502 INFO : Inserting sp|O75636|FCN3_HUMAN

07 Nov 2020 14:53:34,575 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:34,663 INFO : Inserting sp|Q9BWP8|COL11_HUMAN

07 Nov 2020 14:53:34,720 INFO : 77% Done

07 Nov 2020 14:53:35,465 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:35,513 INFO : Inserting sp|P27918|PROP_HUMAN

07 Nov 2020 14:53:35,547 INFO : 81% Done

07 Nov 2020 14:53:36,670 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:36,796 INFO : Inserting sp|P04003|C4BPA_HUMAN

07 Nov 2020 14:53:36,928 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:37,009 INFO : Inserting sp|P20851|C4BPB_HUMAN

07 Nov 2020 14:53:37,056 INFO : 85% Done

07 Nov 2020 14:53:37,834 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:37,890 INFO : Inserting sp|P05155|IC1_HUMAN

07 Nov 2020 14:53:37,939 INFO : 89% Done

07 Nov 2020 14:53:38,784 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:38,865 INFO : Inserting sp|P10909|CLUS_HUMAN

07 Nov 2020 14:53:38,940 INFO : 93% Done

07 Nov 2020 14:53:39,913 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:40,009 INFO : Inserting sp|P04004|VTNC_HUMAN

07 Nov 2020 14:53:40,068 INFO : 97% Done

07 Nov 2020 14:53:40,796 DEBUG: Total peptides inserted: 2

07 Nov 2020 14:53:40,892 INFO : Inserting sp|Q03591|FHR1_HUMAN

07 Nov 2020 14:53:40,976 INFO : 98% Done

07 Nov 2020 14:53:41,024 DEBUG: Total peptides inserted: 2

07 Nov 2020 14:53:41,071 INFO : Inserting sp|P36980|FHR2_HUMAN

07 Nov 2020 14:53:41,149 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:41,202 INFO : Inserting sp|Q02985|FHR3_HUMAN

07 Nov 2020 14:53:41,265 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:41,328 INFO : Inserting sp|Q92496|FHR4_HUMAN

07 Nov 2020 14:53:41,525 DEBUG: Total peptides inserted: 3

07 Nov 2020 14:53:41,564 INFO : Inserting sp|Q9BXR6|FHR5_HUMAN

07 Nov 2020 14:53:41,666 DEBUG: Total peptides inserted: 2

07 Nov 2020 14:53:41,666 INFO : Done parsing Skyline document.

07 Nov 2020 14:53:41,670 INFO : Creating and populating temp tables for Proportion values

07 Nov 2020 14:53:41,801 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

07 Nov 2020 14:53:42,712 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

07 Nov 2020 14:53:43,019 INFO : Cleaning up temp tables

07 Nov 2020 14:53:44,107 INFO : Completed import of Skyline document from Panorama_patient_mox-method.sky.zip

07 Nov 2020 14:53:44,112 INFO : 100% Done

07 Nov 2020 14:53:44,117 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Radboud%20University%20Medical%20Center%20Translational%20Metabolic%20Lab%20-%20Targeted%20MRM%20assay%20Complement%20System%20for%20Complement%20deficiencies_92046f56-0375-1039-927b-3013bb9ba7ed/_temp__2020-11-07_14-27-27/export/xar/experiments_and_runs.xar.exploded/Run94335/Panorama_patient_mox-method.sky.zip into the system

07 Nov 2020 14:53:44,118 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Radboud%20University%20Medical%20Center%20Translational%20Metabolic%20Lab%20-%20Targeted%20MRM%20assay%20Complement%20System%20for%20Complement%20deficiencies_92046f56-0375-1039-927b-3013bb9ba7ed/_temp__2020-11-07_14-27-27/export/xar/experiments_and_runs.xar.exploded/Run94334/Panorama_patient_cys-method/2020-04-29_New%20import%20patients%20only_cys.skyd into the system

07 Nov 2020 14:53:44,118 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Radboud%20University%20Medical%20Center%20Translational%20Metabolic%20Lab%20-%20Targeted%20MRM%20assay%20Complement%20System%20for%20Complement%20deficiencies_92046f56-0375-1039-927b-3013bb9ba7ed/_temp__2020-11-07_14-27-27/export/xar/experiments_and_runs.xar.exploded/Run94334/Panorama_patient_cys-method/2020-04-29_New%20import%20patients%20only_cys.skyd into the system

07 Nov 2020 14:53:44,118 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Radboud%20University%20Medical%20Center%20Translational%20Metabolic%20Lab%20-%20Targeted%20MRM%20assay%20Complement%20System%20for%20Complement%20deficiencies_92046f56-0375-1039-927b-3013bb9ba7ed/_temp__2020-11-07_14-27-27/export/xar/experiments_and_runs.xar.exploded/Run94334/Panorama_patient_cys-method.sky.zip into the system

07 Nov 2020 14:53:44,120 INFO : Starting import from Panorama_patient_cys-method.sky.zip

07 Nov 2020 14:53:44,123 INFO : Starting to import Skyline document from Panorama_patient_cys-method.sky.zip

07 Nov 2020 14:53:44,125 INFO : Expanding HumanPlasma_2012-08_all.blib

07 Nov 2020 14:53:44,126 INFO : Expanding 2020-04-29_New import patients only_cys.skyd

07 Nov 2020 14:53:44,169 INFO : Expanding 2020-04-29_New import patients only_cys.sky.view

07 Nov 2020 14:53:44,170 INFO : Expanding 2020-04-29_New import patients only_cys.sky

07 Nov 2020 14:53:44,194 WARN : The version of this Skyline document is 20.1. This is newer than the highest supported version 4.1

07 Nov 2020 14:53:44,200 INFO : 1% Done

07 Nov 2020 14:53:44,497 INFO : Inserting sp|P02745|C1QA_HUMAN

07 Nov 2020 14:53:44,506 INFO : 6% Done

07 Nov 2020 14:53:44,988 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:44,992 INFO : Inserting sp|P02746|C1QB_HUMAN

07 Nov 2020 14:53:45,002 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:45,005 INFO : Inserting sp|P02747|C1QC_HUMAN

07 Nov 2020 14:53:45,014 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:45,018 INFO : Inserting sp|P00736|C1R_HUMAN

07 Nov 2020 14:53:45,034 DEBUG: Total peptides inserted: 2

07 Nov 2020 14:53:45,037 INFO : Inserting sp|P09871|C1S_HUMAN

07 Nov 2020 14:53:45,043 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:45,046 INFO : Inserting sp|P06681|CO2_HUMAN

07 Nov 2020 14:53:45,054 INFO : 10% Done

07 Nov 2020 14:53:45,374 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:45,378 INFO : Inserting sp|P01024|CO3_HUMAN

07 Nov 2020 14:53:45,396 DEBUG: Total peptides inserted: 2

07 Nov 2020 14:53:45,399 INFO : 11% Done

07 Nov 2020 14:53:45,403 INFO : Inserting sp|P0C0L5|CO4_HUMAN

07 Nov 2020 14:53:45,418 INFO : 15% Done

07 Nov 2020 14:53:45,714 DEBUG: Total peptides inserted: 2

07 Nov 2020 14:53:45,718 INFO : Inserting sp|P01031|CO5_HUMAN

07 Nov 2020 14:53:45,733 DEBUG: Total peptides inserted: 2

07 Nov 2020 14:53:45,736 INFO : Inserting sp|P13671|CO6_HUMAN

07 Nov 2020 14:53:45,744 INFO : 19% Done

07 Nov 2020 14:53:46,071 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:46,075 INFO : Inserting sp|P10643|CO7_HUMAN

07 Nov 2020 14:53:46,085 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:46,088 INFO : Inserting sp|P07357|CO8A_HUMAN

07 Nov 2020 14:53:46,098 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:46,101 INFO : Inserting sp|P07358|CO8B_HUMAN

07 Nov 2020 14:53:46,111 INFO : 20% Done

07 Nov 2020 14:53:46,118 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:46,121 INFO : Inserting sp|P07360|CO8G_HUMAN

07 Nov 2020 14:53:46,128 INFO : 24% Done

07 Nov 2020 14:53:46,489 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:46,493 INFO : Inserting sp|P02748|CO9_HUMAN

07 Nov 2020 14:53:46,511 DEBUG: Total peptides inserted: 2

07 Nov 2020 14:53:46,514 INFO : Inserting sp|P00751|CFAB_HUMAN

07 Nov 2020 14:53:46,523 INFO : 27% Done

07 Nov 2020 14:53:47,261 DEBUG: Total peptides inserted: 2

07 Nov 2020 14:53:47,271 INFO : Inserting sp|P00746|CFAD_HUMAN

07 Nov 2020 14:53:47,286 INFO : 31% Done

07 Nov 2020 14:53:48,082 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:48,091 INFO : Inserting sp|P08603|CFAH_HUMAN

07 Nov 2020 14:53:48,108 INFO : 36% Done

07 Nov 2020 14:53:49,112 INFO : 40% Done

07 Nov 2020 14:53:49,891 INFO : 44% Done

07 Nov 2020 14:53:50,577 DEBUG: Total peptides inserted: 3

07 Nov 2020 14:53:50,584 INFO : Inserting sp|P05156|CFAI_HUMAN

07 Nov 2020 14:53:50,594 INFO : 49% Done

07 Nov 2020 14:53:51,107 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:51,110 INFO : Inserting sp|P02741|CRP_HUMAN

07 Nov 2020 14:53:51,119 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:51,123 INFO : Inserting sp|P48740|MASP1_HUMAN

07 Nov 2020 14:53:51,132 INFO : 53% Done

07 Nov 2020 14:53:51,452 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:51,456 INFO : Inserting sp|P48740-2|MASP3_HUMAN

07 Nov 2020 14:53:51,465 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:51,468 INFO : Inserting sp|P11226|MBL2_HUMAN

07 Nov 2020 14:53:51,487 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:51,491 INFO : Inserting sp|O75636|FCN3_HUMAN

07 Nov 2020 14:53:51,500 INFO : 57% Done

07 Nov 2020 14:53:51,881 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:51,884 INFO : Inserting sp|Q9BWP8|COL11_HUMAN

07 Nov 2020 14:53:51,893 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:51,896 INFO : Inserting sp|P27918|PROP_HUMAN

07 Nov 2020 14:53:51,904 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:51,907 INFO : Inserting sp|P04003|C4BPA_HUMAN

07 Nov 2020 14:53:51,916 INFO : 62% Done

07 Nov 2020 14:53:52,227 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:52,231 INFO : Inserting sp|P20851|C4BPB_HUMAN

07 Nov 2020 14:53:52,239 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:52,242 INFO : Inserting sp|P05155|IC1_HUMAN

07 Nov 2020 14:53:52,260 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:52,264 INFO : Inserting sp|P10909|CLUS_HUMAN

07 Nov 2020 14:53:52,272 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:52,275 INFO : Inserting sp|P04004|VTNC_HUMAN

07 Nov 2020 14:53:52,285 INFO : 66% Done

07 Nov 2020 14:53:52,618 DEBUG: Total peptides inserted: 2

07 Nov 2020 14:53:52,622 INFO : Inserting sp|Q03591|FHR1_HUMAN

07 Nov 2020 14:53:52,631 INFO : 69% Done

07 Nov 2020 14:53:52,825 INFO : 73% Done

07 Nov 2020 14:53:53,102 DEBUG: Total peptides inserted: 2

07 Nov 2020 14:53:53,106 INFO : Inserting sp|P36980|FHR2_HUMAN

07 Nov 2020 14:53:53,114 INFO : 76% Done

07 Nov 2020 14:53:53,409 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:53,413 INFO : 77% Done

07 Nov 2020 14:53:53,416 INFO : Inserting sp|Q02985|FHR3_HUMAN

07 Nov 2020 14:53:53,422 INFO : 79% Done

07 Nov 2020 14:53:53,570 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:53,573 INFO : Inserting sp|Q92496|FHR4_HUMAN

07 Nov 2020 14:53:53,581 INFO : 83% Done

07 Nov 2020 14:53:53,872 INFO : 87% Done

07 Nov 2020 14:53:54,135 INFO : 90% Done

07 Nov 2020 14:53:54,306 DEBUG: Total peptides inserted: 3

07 Nov 2020 14:53:54,310 INFO : Inserting sp|Q9BXR6|FHR5_HUMAN

07 Nov 2020 14:53:54,317 INFO : 94% Done

07 Nov 2020 14:53:54,635 INFO : 98% Done

07 Nov 2020 14:53:54,951 DEBUG: Total peptides inserted: 2

07 Nov 2020 14:53:54,951 INFO : Done parsing Skyline document.

07 Nov 2020 14:53:54,952 INFO : Creating and populating temp tables for Proportion values

07 Nov 2020 14:53:55,117 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

07 Nov 2020 14:53:55,459 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

07 Nov 2020 14:53:55,585 INFO : Cleaning up temp tables

07 Nov 2020 14:53:55,860 INFO : Completed import of Skyline document from Panorama_patient_cys-method.sky.zip

07 Nov 2020 14:53:55,865 INFO : 100% Done

07 Nov 2020 14:53:55,870 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Radboud%20University%20Medical%20Center%20Translational%20Metabolic%20Lab%20-%20Targeted%20MRM%20assay%20Complement%20System%20for%20Complement%20deficiencies_92046f56-0375-1039-927b-3013bb9ba7ed/_temp__2020-11-07_14-27-27/export/xar/experiments_and_runs.xar.exploded/Run94334/Panorama_patient_cys-method.sky.zip into the system

07 Nov 2020 14:53:55,870 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Radboud%20University%20Medical%20Center%20Translational%20Metabolic%20Lab%20-%20Targeted%20MRM%20assay%20Complement%20System%20for%20Complement%20deficiencies_92046f56-0375-1039-927b-3013bb9ba7ed/_temp__2020-11-07_14-27-27/export/xar/experiments_and_runs.xar.exploded/Run94333/Panorama_controls_mox-method/2020-06-02_New%20import%20controls%20only%2060%20+%20adults_mox.skyd into the system

07 Nov 2020 14:53:55,870 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Radboud%20University%20Medical%20Center%20Translational%20Metabolic%20Lab%20-%20Targeted%20MRM%20assay%20Complement%20System%20for%20Complement%20deficiencies_92046f56-0375-1039-927b-3013bb9ba7ed/_temp__2020-11-07_14-27-27/export/xar/experiments_and_runs.xar.exploded/Run94333/Panorama_controls_mox-method/2020-06-02_New%20import%20controls%20only%2060%20+%20adults_mox.skyd into the system

07 Nov 2020 14:53:55,870 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Radboud%20University%20Medical%20Center%20Translational%20Metabolic%20Lab%20-%20Targeted%20MRM%20assay%20Complement%20System%20for%20Complement%20deficiencies_92046f56-0375-1039-927b-3013bb9ba7ed/_temp__2020-11-07_14-27-27/export/xar/experiments_and_runs.xar.exploded/Run94333/Panorama_controls_mox-method.sky.zip into the system

07 Nov 2020 14:53:55,872 INFO : Starting import from Panorama_controls_mox-method.sky.zip

07 Nov 2020 14:53:55,875 INFO : Starting to import Skyline document from Panorama_controls_mox-method.sky.zip

07 Nov 2020 14:53:55,877 INFO : Expanding HumanPlasma_2012-08_all.blib

07 Nov 2020 14:53:55,877 INFO : Expanding 2020-06-02_New import controls only 60 + adults_mox.skyd

07 Nov 2020 14:53:55,899 INFO : Expanding 2020-06-02_New import controls only 60 + adults_mox.sky.view

07 Nov 2020 14:53:55,900 INFO : Expanding 2020-06-02_New import controls only 60 + adults_mox.sky

07 Nov 2020 14:53:55,914 WARN : The version of this Skyline document is 20.1. This is newer than the highest supported version 4.1

07 Nov 2020 14:53:55,920 INFO : 1% Done

07 Nov 2020 14:53:56,104 INFO : Inserting sp|P02745|C1QA_HUMAN

07 Nov 2020 14:53:56,119 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:56,125 INFO : Inserting sp|P02746|C1QB_HUMAN

07 Nov 2020 14:53:56,158 INFO : 5% Done

07 Nov 2020 14:53:56,480 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:56,486 INFO : Inserting sp|P02747|C1QC_HUMAN

07 Nov 2020 14:53:56,493 INFO : 9% Done

07 Nov 2020 14:53:56,668 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:56,672 INFO : Inserting sp|P00736|C1R_HUMAN

07 Nov 2020 14:53:56,678 INFO : 13% Done

07 Nov 2020 14:53:56,821 INFO : 17% Done

07 Nov 2020 14:53:56,959 DEBUG: Total peptides inserted: 2

07 Nov 2020 14:53:56,963 INFO : Inserting sp|P09871|C1S_HUMAN

07 Nov 2020 14:53:56,968 INFO : 20% Done

07 Nov 2020 14:53:57,130 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:57,133 INFO : Inserting sp|P06681|CO2_HUMAN

07 Nov 2020 14:53:57,142 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:57,145 INFO : Inserting sp|P01024|CO3_HUMAN

07 Nov 2020 14:53:57,151 INFO : 24% Done

07 Nov 2020 14:53:57,294 INFO : 27% Done

07 Nov 2020 14:53:57,456 DEBUG: Total peptides inserted: 2

07 Nov 2020 14:53:57,461 INFO : Inserting sp|P0C0L5|CO4_HUMAN

07 Nov 2020 14:53:57,467 INFO : 31% Done

07 Nov 2020 14:53:57,628 DEBUG: Total peptides inserted: 2

07 Nov 2020 14:53:57,631 INFO : Inserting sp|P01031|CO5_HUMAN

07 Nov 2020 14:53:57,637 INFO : 35% Done

07 Nov 2020 14:53:57,781 INFO : 39% Done

07 Nov 2020 14:53:57,921 DEBUG: Total peptides inserted: 2

07 Nov 2020 14:53:57,924 INFO : Inserting sp|P13671|CO6_HUMAN

07 Nov 2020 14:53:57,950 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:57,954 INFO : Inserting sp|P10643|CO7_HUMAN

07 Nov 2020 14:53:57,960 INFO : 43% Done

07 Nov 2020 14:53:58,099 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:58,102 INFO : Inserting sp|P07357|CO8A_HUMAN

07 Nov 2020 14:53:58,131 INFO : 47% Done

07 Nov 2020 14:53:58,270 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:58,274 INFO : Inserting sp|P07358|CO8B_HUMAN

07 Nov 2020 14:53:58,280 INFO : 50% Done

07 Nov 2020 14:53:58,392 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:58,396 INFO : Inserting sp|P07360|CO8G_HUMAN

07 Nov 2020 14:53:58,404 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:58,407 INFO : Inserting sp|P02748|CO9_HUMAN

07 Nov 2020 14:53:58,413 INFO : 54% Done

07 Nov 2020 14:53:58,586 INFO : 58% Done

07 Nov 2020 14:53:58,774 DEBUG: Total peptides inserted: 2

07 Nov 2020 14:53:58,779 INFO : Inserting sp|P00751|CFAB_HUMAN

07 Nov 2020 14:53:58,803 INFO : 62% Done

07 Nov 2020 14:53:58,992 DEBUG: Total peptides inserted: 2

07 Nov 2020 14:53:58,998 INFO : Inserting sp|P00746|CFAD_HUMAN

07 Nov 2020 14:53:59,025 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:59,030 INFO : Inserting sp|P08603|CFAH_HUMAN

07 Nov 2020 14:53:59,049 INFO : 63% Done

07 Nov 2020 14:53:59,157 DEBUG: Total peptides inserted: 3

07 Nov 2020 14:53:59,161 INFO : Inserting sp|P05156|CFAI_HUMAN

07 Nov 2020 14:53:59,168 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:59,172 INFO : Inserting sp|P02741|CRP_HUMAN

07 Nov 2020 14:53:59,177 INFO : 66% Done

07 Nov 2020 14:53:59,314 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:59,318 INFO : 67% Done

07 Nov 2020 14:53:59,321 INFO : Inserting sp|P48740|MASP1_HUMAN

07 Nov 2020 14:53:59,387 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:59,391 INFO : Inserting sp|P48740-2|MASP3_HUMAN

07 Nov 2020 14:53:59,396 INFO : 71% Done

07 Nov 2020 14:53:59,589 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:59,592 INFO : Inserting sp|P11226|MBL2_HUMAN

07 Nov 2020 14:53:59,597 INFO : 73% Done

07 Nov 2020 14:53:59,707 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:59,711 INFO : 74% Done

07 Nov 2020 14:53:59,714 INFO : Inserting sp|O75636|FCN3_HUMAN

07 Nov 2020 14:53:59,722 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:59,725 INFO : Inserting sp|Q9BWP8|COL11_HUMAN

07 Nov 2020 14:53:59,730 INFO : 77% Done

07 Nov 2020 14:53:59,870 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:53:59,874 INFO : Inserting sp|P27918|PROP_HUMAN

07 Nov 2020 14:53:59,879 INFO : 80% Done

07 Nov 2020 14:54:00,017 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:54:00,020 INFO : Inserting sp|P04003|C4BPA_HUMAN

07 Nov 2020 14:54:00,024 INFO : 81% Done

07 Nov 2020 14:54:00,032 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:54:00,035 INFO : Inserting sp|P20851|C4BPB_HUMAN

07 Nov 2020 14:54:00,040 INFO : 85% Done

07 Nov 2020 14:54:00,254 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:54:00,257 INFO : Inserting sp|P05155|IC1_HUMAN

07 Nov 2020 14:54:00,263 INFO : 89% Done

07 Nov 2020 14:54:00,400 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:54:00,404 INFO : Inserting sp|P10909|CLUS_HUMAN

07 Nov 2020 14:54:00,409 INFO : 92% Done

07 Nov 2020 14:54:00,546 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:54:00,550 INFO : 93% Done

07 Nov 2020 14:54:00,553 INFO : Inserting sp|P04004|VTNC_HUMAN

07 Nov 2020 14:54:00,567 INFO : 97% Done

07 Nov 2020 14:54:00,703 DEBUG: Total peptides inserted: 2

07 Nov 2020 14:54:00,706 INFO : Inserting sp|Q03591|FHR1_HUMAN

07 Nov 2020 14:54:00,722 DEBUG: Total peptides inserted: 2

07 Nov 2020 14:54:00,725 INFO : Inserting sp|P36980|FHR2_HUMAN

07 Nov 2020 14:54:00,733 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:54:00,737 INFO : Inserting sp|Q02985|FHR3_HUMAN

07 Nov 2020 14:54:00,760 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:54:00,763 INFO : Inserting sp|Q92496|FHR4_HUMAN

07 Nov 2020 14:54:00,776 INFO : 98% Done

07 Nov 2020 14:54:00,792 DEBUG: Total peptides inserted: 3

07 Nov 2020 14:54:00,795 INFO : Inserting sp|Q9BXR6|FHR5_HUMAN

07 Nov 2020 14:54:00,810 DEBUG: Total peptides inserted: 2

07 Nov 2020 14:54:00,810 INFO : Done parsing Skyline document.

07 Nov 2020 14:54:00,812 INFO : Creating and populating temp tables for Proportion values

07 Nov 2020 14:54:00,841 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

07 Nov 2020 14:54:01,004 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

07 Nov 2020 14:54:01,075 INFO : Cleaning up temp tables

07 Nov 2020 14:54:01,329 INFO : Completed import of Skyline document from Panorama_controls_mox-method.sky.zip

07 Nov 2020 14:54:01,334 INFO : 100% Done

07 Nov 2020 14:54:01,339 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Radboud%20University%20Medical%20Center%20Translational%20Metabolic%20Lab%20-%20Targeted%20MRM%20assay%20Complement%20System%20for%20Complement%20deficiencies_92046f56-0375-1039-927b-3013bb9ba7ed/_temp__2020-11-07_14-27-27/export/xar/experiments_and_runs.xar.exploded/Run94333/Panorama_controls_mox-method.sky.zip into the system

07 Nov 2020 14:54:01,339 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Radboud%20University%20Medical%20Center%20Translational%20Metabolic%20Lab%20-%20Targeted%20MRM%20assay%20Complement%20System%20for%20Complement%20deficiencies_92046f56-0375-1039-927b-3013bb9ba7ed/_temp__2020-11-07_14-27-27/export/xar/experiments_and_runs.xar.exploded/Run94332/Panorama_controls_cys-method/2020-06-02_New%20import%20controls%20only%2060%20+%20adults_cys.skyd into the system

07 Nov 2020 14:54:01,340 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Radboud%20University%20Medical%20Center%20Translational%20Metabolic%20Lab%20-%20Targeted%20MRM%20assay%20Complement%20System%20for%20Complement%20deficiencies_92046f56-0375-1039-927b-3013bb9ba7ed/_temp__2020-11-07_14-27-27/export/xar/experiments_and_runs.xar.exploded/Run94332/Panorama_controls_cys-method/2020-06-02_New%20import%20controls%20only%2060%20+%20adults_cys.skyd into the system

07 Nov 2020 14:54:01,340 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Radboud%20University%20Medical%20Center%20Translational%20Metabolic%20Lab%20-%20Targeted%20MRM%20assay%20Complement%20System%20for%20Complement%20deficiencies_92046f56-0375-1039-927b-3013bb9ba7ed/_temp__2020-11-07_14-27-27/export/xar/experiments_and_runs.xar.exploded/Run94332/Panorama_controls_cys-method.sky.zip into the system

07 Nov 2020 14:54:01,341 INFO : Starting import from Panorama_controls_cys-method.sky.zip

07 Nov 2020 14:54:01,345 INFO : Starting to import Skyline document from Panorama_controls_cys-method.sky.zip

07 Nov 2020 14:54:01,346 INFO : Expanding HumanPlasma_2012-08_all.blib

07 Nov 2020 14:54:01,347 INFO : Expanding 2020-06-02_New import controls only 60 + adults_cys.skyd

07 Nov 2020 14:54:01,367 INFO : Expanding 2020-06-02_New import controls only 60 + adults_cys.sky.view

07 Nov 2020 14:54:01,367 INFO : Expanding 2020-06-02_New import controls only 60 + adults_cys.sky

07 Nov 2020 14:54:01,381 WARN : The version of this Skyline document is 20.1. This is newer than the highest supported version 4.1

07 Nov 2020 14:54:01,386 INFO : 1% Done

07 Nov 2020 14:54:01,524 INFO : Inserting sp|P02745|C1QA_HUMAN

07 Nov 2020 14:54:01,532 INFO : 6% Done

07 Nov 2020 14:54:01,671 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:54:01,675 INFO : Inserting sp|P02746|C1QB_HUMAN

07 Nov 2020 14:54:01,730 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:54:01,733 INFO : Inserting sp|P02747|C1QC_HUMAN

07 Nov 2020 14:54:01,742 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:54:01,745 INFO : Inserting sp|P00736|C1R_HUMAN

07 Nov 2020 14:54:01,760 DEBUG: Total peptides inserted: 2

07 Nov 2020 14:54:01,763 INFO : Inserting sp|P09871|C1S_HUMAN

07 Nov 2020 14:54:01,767 INFO : 7% Done

07 Nov 2020 14:54:01,773 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:54:01,776 INFO : Inserting sp|P06681|CO2_HUMAN

07 Nov 2020 14:54:01,781 INFO : 11% Done

07 Nov 2020 14:54:01,916 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:54:01,919 INFO : Inserting sp|P01024|CO3_HUMAN

07 Nov 2020 14:54:01,944 DEBUG: Total peptides inserted: 2

07 Nov 2020 14:54:01,949 INFO : Inserting sp|P0C0L5|CO4_HUMAN

07 Nov 2020 14:54:01,962 INFO : 16% Done

07 Nov 2020 14:54:02,128 DEBUG: Total peptides inserted: 2

07 Nov 2020 14:54:02,132 INFO : Inserting sp|P01031|CO5_HUMAN

07 Nov 2020 14:54:02,172 DEBUG: Total peptides inserted: 2

07 Nov 2020 14:54:02,176 INFO : Inserting sp|P13671|CO6_HUMAN

07 Nov 2020 14:54:02,181 INFO : 20% Done

07 Nov 2020 14:54:02,344 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:54:02,348 INFO : Inserting sp|P10643|CO7_HUMAN

07 Nov 2020 14:54:02,356 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:54:02,359 INFO : Inserting sp|P07357|CO8A_HUMAN

07 Nov 2020 14:54:02,368 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:54:02,371 INFO : Inserting sp|P07358|CO8B_HUMAN

07 Nov 2020 14:54:02,375 INFO : 21% Done

07 Nov 2020 14:54:02,395 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:54:02,398 INFO : Inserting sp|P07360|CO8G_HUMAN

07 Nov 2020 14:54:02,403 INFO : 25% Done

07 Nov 2020 14:54:02,542 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:54:02,545 INFO : Inserting sp|P02748|CO9_HUMAN

07 Nov 2020 14:54:02,571 DEBUG: Total peptides inserted: 2

07 Nov 2020 14:54:02,574 INFO : Inserting sp|P00751|CFAB_HUMAN

07 Nov 2020 14:54:02,580 INFO : 28% Done

07 Nov 2020 14:54:02,718 INFO : 29% Done

07 Nov 2020 14:54:02,726 DEBUG: Total peptides inserted: 2

07 Nov 2020 14:54:02,729 INFO : Inserting sp|P00746|CFAD_HUMAN

07 Nov 2020 14:54:02,734 INFO : 32% Done

07 Nov 2020 14:54:02,902 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:54:02,906 INFO : Inserting sp|P08603|CFAH_HUMAN

07 Nov 2020 14:54:02,912 INFO : 36% Done

07 Nov 2020 14:54:03,092 INFO : 40% Done

07 Nov 2020 14:54:03,259 INFO : 45% Done

07 Nov 2020 14:54:03,399 DEBUG: Total peptides inserted: 3

07 Nov 2020 14:54:03,402 INFO : Inserting sp|P05156|CFAI_HUMAN

07 Nov 2020 14:54:03,408 INFO : 49% Done

07 Nov 2020 14:54:03,546 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:54:03,550 INFO : Inserting sp|P02741|CRP_HUMAN

07 Nov 2020 14:54:03,559 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:54:03,562 INFO : Inserting sp|P48740|MASP1_HUMAN

07 Nov 2020 14:54:03,568 INFO : 53% Done

07 Nov 2020 14:54:03,701 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:54:03,706 INFO : Inserting sp|P48740-2|MASP3_HUMAN

07 Nov 2020 14:54:03,714 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:54:03,718 INFO : Inserting sp|P11226|MBL2_HUMAN

07 Nov 2020 14:54:03,724 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:54:03,728 INFO : 54% Done

07 Nov 2020 14:54:03,731 INFO : Inserting sp|O75636|FCN3_HUMAN

07 Nov 2020 14:54:03,736 INFO : 58% Done

07 Nov 2020 14:54:03,873 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:54:03,876 INFO : Inserting sp|Q9BWP8|COL11_HUMAN

07 Nov 2020 14:54:03,885 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:54:03,889 INFO : Inserting sp|P27918|PROP_HUMAN

07 Nov 2020 14:54:03,896 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:54:03,899 INFO : Inserting sp|P04003|C4BPA_HUMAN

07 Nov 2020 14:54:03,905 INFO : 62% Done

07 Nov 2020 14:54:04,041 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:54:04,044 INFO : Inserting sp|P20851|C4BPB_HUMAN

07 Nov 2020 14:54:04,048 INFO : 63% Done

07 Nov 2020 14:54:04,056 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:54:04,060 INFO : Inserting sp|P05155|IC1_HUMAN

07 Nov 2020 14:54:04,068 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:54:04,071 INFO : Inserting sp|P10909|CLUS_HUMAN

07 Nov 2020 14:54:04,089 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:54:04,092 INFO : Inserting sp|P04004|VTNC_HUMAN

07 Nov 2020 14:54:04,098 INFO : 67% Done

07 Nov 2020 14:54:04,243 DEBUG: Total peptides inserted: 2

07 Nov 2020 14:54:04,246 INFO : Inserting sp|Q03591|FHR1_HUMAN

07 Nov 2020 14:54:04,251 INFO : 70% Done

07 Nov 2020 14:54:04,341 INFO : 74% Done

07 Nov 2020 14:54:04,474 DEBUG: Total peptides inserted: 2

07 Nov 2020 14:54:04,477 INFO : Inserting sp|P36980|FHR2_HUMAN

07 Nov 2020 14:54:04,483 INFO : 77% Done

07 Nov 2020 14:54:04,620 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:54:04,623 INFO : Inserting sp|Q02985|FHR3_HUMAN

07 Nov 2020 14:54:04,629 INFO : 79% Done

07 Nov 2020 14:54:04,710 DEBUG: Total peptides inserted: 1

07 Nov 2020 14:54:04,713 INFO : Inserting sp|Q92496|FHR4_HUMAN

07 Nov 2020 14:54:04,719 INFO : 83% Done

07 Nov 2020 14:54:04,905 INFO : 87% Done

07 Nov 2020 14:54:05,076 INFO : 90% Done

07 Nov 2020 14:54:05,158 DEBUG: Total peptides inserted: 3

07 Nov 2020 14:54:05,161 INFO : Inserting sp|Q9BXR6|FHR5_HUMAN

07 Nov 2020 14:54:05,167 INFO : 94% Done

07 Nov 2020 14:54:05,309 INFO : 98% Done

07 Nov 2020 14:54:05,446 DEBUG: Total peptides inserted: 2

07 Nov 2020 14:54:05,446 INFO : Done parsing Skyline document.

07 Nov 2020 14:54:05,448 INFO : Creating and populating temp tables for Proportion values

07 Nov 2020 14:54:05,477 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

07 Nov 2020 14:54:05,634 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

07 Nov 2020 14:54:05,692 INFO : Cleaning up temp tables

07 Nov 2020 14:54:05,970 INFO : Completed import of Skyline document from Panorama_controls_cys-method.sky.zip

07 Nov 2020 14:54:05,975 INFO : 100% Done

07 Nov 2020 14:54:05,980 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Radboud%20University%20Medical%20Center%20Translational%20Metabolic%20Lab%20-%20Targeted%20MRM%20assay%20Complement%20System%20for%20Complement%20deficiencies_92046f56-0375-1039-927b-3013bb9ba7ed/_temp__2020-11-07_14-27-27/export/xar/experiments_and_runs.xar.exploded/Run94332/Panorama_controls_cys-method.sky.zip into the system

07 Nov 2020 14:54:06,001 INFO : Done importing xar

07 Nov 2020 14:54:06,004 INFO : Loading pages and webpart properties

07 Nov 2020 14:54:06,215 INFO : Done importing pages and webpart properties

07 Nov 2020 14:54:06,216 INFO :

07 Nov 2020 14:54:06,216 INFO : Experiment import completed successfully.

07 Nov 2020 14:54:06,216 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'

07 Nov 2020 14:54:06,291 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'

07 Nov 2020 14:54:06,291 INFO :

07 Nov 2020 14:54:06,291 INFO : Finishing up experiment copy.

07 Nov 2020 14:54:06,294 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.

07 Nov 2020 14:54:06,297 INFO : Assigning a ProteomeXchange ID.

07 Nov 2020 14:54:06,515 INFO : Updating access URL to point to the new copy of the data.

07 Nov 2020 14:54:06,548 INFO : Setting the 'copied' timestamp and journalExperimentId on the JournalExperiment table.

07 Nov 2020 14:54:06,683 INFO : Removing copy permissions given to journal.

07 Nov 2020 14:54:06,684 INFO : Adding read permissions to all users that are folder admins in the source container.

07 Nov 2020 14:54:06,716 INFO : Setting the TargetedMS folder type to 'Experimental Data'

07 Nov 2020 14:54:06,724 INFO : Updating the 'Raw Data' tab configuration

07 Nov 2020 14:54:06,727 INFO : Updating dataFileUrls for run Panorama_controls_cys-method.sky.zip; targetedms run ID 96649

07 Nov 2020 14:54:06,727 INFO : Updating dataFileUrl...

07 Nov 2020 14:54:06,727 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/Radboud%20University%20Medical%20Center%20Translational%20Metabolic%20Lab%20-%20Targeted%20MRM%20assay%20Complement%20System%20for%20Complement%20deficiencies_92046f56-0375-1039-927b-3013bb9ba7ed/_temp__2020-11-07_14-27-27/export/xar/experiments_and_runs.xar.exploded/Run94332/Panorama_controls_cys-method.sky.zip

07 Nov 2020 14:54:06,728 INFO : to: file:///data/labkey/files/Panorama%20Public/2020/Radboud%20University%20Medical%20Center%20Translational%20Metabolic%20Lab%20-%20Targeted%20MRM%20assay%20Complement%20System%20for%20Complement%20deficiencies/@files/Panorama_controls_cys-method.sky.zip

07 Nov 2020 14:54:06,731 INFO : Updating dataFileUrl...

07 Nov 2020 14:54:06,731 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/Radboud%20University%20Medical%20Center%20Translational%20Metabolic%20Lab%20-%20Targeted%20MRM%20assay%20Complement%20System%20for%20Complement%20deficiencies_92046f56-0375-1039-927b-3013bb9ba7ed/_temp__2020-11-07_14-27-27/export/xar/experiments_and_runs.xar.exploded/Run94332/Panorama_controls_cys-method/2020-06-02_New%20import%20controls%20only%2060%20+%20adults_cys.skyd

07 Nov 2020 14:54:06,731 INFO : to: file:///data/labkey/files/Panorama%20Public/2020/Radboud%20University%20Medical%20Center%20Translational%20Metabolic%20Lab%20-%20Targeted%20MRM%20assay%20Complement%20System%20for%20Complement%20deficiencies/@files/Panorama_controls_cys-method/2020-06-02_New%20import%20controls%20only%2060%20+%20adults_cys.skyd

07 Nov 2020 14:54:06,741 INFO : Updating dataFileUrls for run Panorama_controls_mox-method.sky.zip; targetedms run ID 96648

07 Nov 2020 14:54:06,742 INFO : Updating dataFileUrl...

07 Nov 2020 14:54:06,742 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/Radboud%20University%20Medical%20Center%20Translational%20Metabolic%20Lab%20-%20Targeted%20MRM%20assay%20Complement%20System%20for%20Complement%20deficiencies_92046f56-0375-1039-927b-3013bb9ba7ed/_temp__2020-11-07_14-27-27/export/xar/experiments_and_runs.xar.exploded/Run94333/Panorama_controls_mox-method/2020-06-02_New%20import%20controls%20only%2060%20+%20adults_mox.skyd

07 Nov 2020 14:54:06,742 INFO : to: file:///data/labkey/files/Panorama%20Public/2020/Radboud%20University%20Medical%20Center%20Translational%20Metabolic%20Lab%20-%20Targeted%20MRM%20assay%20Complement%20System%20for%20Complement%20deficiencies/@files/Panorama_controls_mox-method/2020-06-02_New%20import%20controls%20only%2060%20+%20adults_mox.skyd

07 Nov 2020 14:54:06,744 INFO : Updating dataFileUrl...

07 Nov 2020 14:54:06,744 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/Radboud%20University%20Medical%20Center%20Translational%20Metabolic%20Lab%20-%20Targeted%20MRM%20assay%20Complement%20System%20for%20Complement%20deficiencies_92046f56-0375-1039-927b-3013bb9ba7ed/_temp__2020-11-07_14-27-27/export/xar/experiments_and_runs.xar.exploded/Run94333/Panorama_controls_mox-method.sky.zip

07 Nov 2020 14:54:06,744 INFO : to: file:///data/labkey/files/Panorama%20Public/2020/Radboud%20University%20Medical%20Center%20Translational%20Metabolic%20Lab%20-%20Targeted%20MRM%20assay%20Complement%20System%20for%20Complement%20deficiencies/@files/Panorama_controls_mox-method.sky.zip

07 Nov 2020 14:54:06,757 INFO : Updating dataFileUrls for run Panorama_patient_cys-method.sky.zip; targetedms run ID 96647

07 Nov 2020 14:54:06,758 INFO : Updating dataFileUrl...

07 Nov 2020 14:54:06,758 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/Radboud%20University%20Medical%20Center%20Translational%20Metabolic%20Lab%20-%20Targeted%20MRM%20assay%20Complement%20System%20for%20Complement%20deficiencies_92046f56-0375-1039-927b-3013bb9ba7ed/_temp__2020-11-07_14-27-27/export/xar/experiments_and_runs.xar.exploded/Run94334/Panorama_patient_cys-method/2020-04-29_New%20import%20patients%20only_cys.skyd

07 Nov 2020 14:54:06,758 INFO : to: file:///data/labkey/files/Panorama%20Public/2020/Radboud%20University%20Medical%20Center%20Translational%20Metabolic%20Lab%20-%20Targeted%20MRM%20assay%20Complement%20System%20for%20Complement%20deficiencies/@files/Panorama_patient_cys-method/2020-04-29_New%20import%20patients%20only_cys.skyd

07 Nov 2020 14:54:06,760 INFO : Updating dataFileUrl...

07 Nov 2020 14:54:06,760 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/Radboud%20University%20Medical%20Center%20Translational%20Metabolic%20Lab%20-%20Targeted%20MRM%20assay%20Complement%20System%20for%20Complement%20deficiencies_92046f56-0375-1039-927b-3013bb9ba7ed/_temp__2020-11-07_14-27-27/export/xar/experiments_and_runs.xar.exploded/Run94334/Panorama_patient_cys-method.sky.zip

07 Nov 2020 14:54:06,761 INFO : to: file:///data/labkey/files/Panorama%20Public/2020/Radboud%20University%20Medical%20Center%20Translational%20Metabolic%20Lab%20-%20Targeted%20MRM%20assay%20Complement%20System%20for%20Complement%20deficiencies/@files/Panorama_patient_cys-method.sky.zip

07 Nov 2020 14:54:06,764 INFO : Updating dataFileUrls for run Panorama_patient_mox-method.sky.zip; targetedms run ID 96646

07 Nov 2020 14:54:06,765 INFO : Updating dataFileUrl...

07 Nov 2020 14:54:06,765 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/Radboud%20University%20Medical%20Center%20Translational%20Metabolic%20Lab%20-%20Targeted%20MRM%20assay%20Complement%20System%20for%20Complement%20deficiencies_92046f56-0375-1039-927b-3013bb9ba7ed/_temp__2020-11-07_14-27-27/export/xar/experiments_and_runs.xar.exploded/Run94335/Panorama_patient_mox-method/2020-04-29_New%20import%20patients%20only_mox.skyd

07 Nov 2020 14:54:06,765 INFO : to: file:///data/labkey/files/Panorama%20Public/2020/Radboud%20University%20Medical%20Center%20Translational%20Metabolic%20Lab%20-%20Targeted%20MRM%20assay%20Complement%20System%20for%20Complement%20deficiencies/@files/Panorama_patient_mox-method/2020-04-29_New%20import%20patients%20only_mox.skyd

07 Nov 2020 14:54:06,767 INFO : Updating dataFileUrl...

07 Nov 2020 14:54:06,767 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/Radboud%20University%20Medical%20Center%20Translational%20Metabolic%20Lab%20-%20Targeted%20MRM%20assay%20Complement%20System%20for%20Complement%20deficiencies_92046f56-0375-1039-927b-3013bb9ba7ed/_temp__2020-11-07_14-27-27/export/xar/experiments_and_runs.xar.exploded/Run94335/Panorama_patient_mox-method.sky.zip

07 Nov 2020 14:54:06,767 INFO : to: file:///data/labkey/files/Panorama%20Public/2020/Radboud%20University%20Medical%20Center%20Translational%20Metabolic%20Lab%20-%20Targeted%20MRM%20assay%20Complement%20System%20for%20Complement%20deficiencies/@files/Panorama_patient_mox-method.sky.zip

07 Nov 2020 14:54:06,770 INFO : Creating a reviewer account.

07 Nov 2020 14:54:07,168 INFO : Created reviewer with email: User panorama+gloerich@proteinms.net

07 Nov 2020 14:54:07,182 INFO : Hiding the Data Pipeline tab.

07 Nov 2020 14:54:07,296 INFO : Emailing submitter.

07 Nov 2020 14:54:07,542 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'