23 Jun 2020 16:08:46,371 INFO : Copying experiment "Identification of candidate circulating glucocorticoid response biomarkers in humans using a proteomic approach" from folder /QIMRBerghofer Medical Research Institute/Precision & Systems Biomedicine (Hill Group)/Identification of candidate circulating glucocorticoid response biomarkers in humans using a proteomic approach to /Panorama Public/2020/QIMRBerghofer - Identification of candidate circulating glucocorticoid response biomarkers in humans using a proteomic approach
23 Jun 2020 16:08:46,371 INFO : =======================================
23 Jun 2020 16:08:46,517 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
23 Jun 2020 16:08:46,517 INFO :
23 Jun 2020 16:08:46,517 INFO : Exporting experiment.
23 Jun 2020 16:09:01,682 INFO :
23 Jun 2020 16:09:01,683 INFO : Experiment export completed successfully.
23 Jun 2020 16:09:01,683 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
23 Jun 2020 16:09:01,760 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
23 Jun 2020 16:09:01,760 INFO :
23 Jun 2020 16:09:01,760 INFO : Importing experiment.
23 Jun 2020 16:09:01,786 INFO : Loading folder properties (folder type, settings and active modules)
23 Jun 2020 16:09:01,989 INFO : Done importing folder properties (folder type, settings and active modules)
23 Jun 2020 16:09:01,997 INFO : Loading etl definitions
23 Jun 2020 16:09:02,002 INFO : Loading wikis
23 Jun 2020 16:09:02,132 INFO : 1 wiki imported
23 Jun 2020 16:09:02,132 INFO : Done importing wikis
23 Jun 2020 16:09:02,132 INFO : Starting to copy files
23 Jun 2020 16:09:10,239 INFO : Copied 37 files
23 Jun 2020 16:09:10,239 INFO : Ensuring exp.data rows exist for imported files
23 Jun 2020 16:09:11,613 INFO : Loading xar
23 Jun 2020 16:09:17,054 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-7261:TargetedMS.ImportSkyZip'
23 Jun 2020 16:09:17,062 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-7261:TargetedMS.ImportSkyZip.Core'
23 Jun 2020 16:09:17,069 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-7261:TargetedMS.ImportSkyZip.Output'
23 Jun 2020 16:09:17,069 DEBUG: Protocol import complete
23 Jun 2020 16:09:17,154 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-7261:Identification+of+candidate+circulating+glucocorticoid+response+biomarkers+in+humans+using+a+proteomic+approach'
23 Jun 2020 16:09:17,155 DEBUG: Experiment/Run group import complete
23 Jun 2020 16:09:17,208 DEBUG: Protocol action set import complete
23 Jun 2020 16:09:17,235 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7261:TargetedMS.ImportSkyZip'
23 Jun 2020 16:09:17,330 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-7261:25421379-966f-1038-8463-3013bb9b28b3'
23 Jun 2020 16:09:17,342 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-7261:25421364-966f-1038-8463-3013bb9b28b3'
23 Jun 2020 16:09:17,342 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7261:TargetedMS.ImportSkyZip.Core'
23 Jun 2020 16:09:17,350 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7261:TargetedMS.ImportSkyZip.Output'
23 Jun 2020 16:09:17,351 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-7261:2542141d-966f-1038-8463-3013bb9b28b3'
23 Jun 2020 16:09:17,354 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/QIMRBerghofer%20-%20Identification%20of%20candidate%20circulating%20glucocorticoid%20response%20biomarkers%20in%20humans%20using%20a%20proteomic%20approach_c9b80e16-97d1-1038-8463-3013bb9b28b3/_temp__2020-06-23_16-08-46/export/xar/experiments_and_runs.xar.exploded/Run87451/20171010_JB_BM_rep_AM_filtered_2020-06-22_14-26-36/20171010_JB_BM_rep_AM_filtered.skyd into the system
23 Jun 2020 16:09:17,355 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/QIMRBerghofer%20-%20Identification%20of%20candidate%20circulating%20glucocorticoid%20response%20biomarkers%20in%20humans%20using%20a%20proteomic%20approach_c9b80e16-97d1-1038-8463-3013bb9b28b3/_temp__2020-06-23_16-08-46/export/xar/experiments_and_runs.xar.exploded/Run87451/20171010_JB_BM_rep_AM_filtered_2020-06-22_14-26-36/20171010_JB_BM_rep_AM_filtered.skyd into the system
23 Jun 2020 16:09:17,355 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/QIMRBerghofer%20-%20Identification%20of%20candidate%20circulating%20glucocorticoid%20response%20biomarkers%20in%20humans%20using%20a%20proteomic%20approach_c9b80e16-97d1-1038-8463-3013bb9b28b3/_temp__2020-06-23_16-08-46/export/xar/experiments_and_runs.xar.exploded/Run87451/20171010_JB_BM_rep_AM_filtered_2020-06-22_14-26-36.sky.zip into the system
23 Jun 2020 16:09:17,359 INFO : Starting import from 20171010_JB_BM_rep_AM_filtered_2020-06-22_14-26-36.sky.zip
23 Jun 2020 16:09:17,367 INFO : Starting to import Skyline document from 20171010_JB_BM_rep_AM_filtered_2020-06-22_14-26-36.sky.zip
23 Jun 2020 16:09:17,374 INFO : Expanding 170620_JBarclay_PBMC_MQ_TS.blib
23 Jun 2020 16:09:17,703 INFO : Expanding 20171010_JB_BM_rep_AM_filtered.skyd
23 Jun 2020 16:09:17,870 INFO : Expanding 20171010_JB_BM_rep_AM_filtered.sky.view
23 Jun 2020 16:09:17,871 INFO : Expanding 20171010_JB_BM_rep_AM_filtered.sky
23 Jun 2020 16:09:17,930 WARN : The version of this Skyline document is 20.12. This is newer than the highest supported version 4.1
23 Jun 2020 16:09:18,426 INFO : Inserting iRT
23 Jun 2020 16:09:18,459 INFO : 1% Done
23 Jun 2020 16:09:18,659 INFO : 2% Done
23 Jun 2020 16:09:18,732 INFO : 3% Done
23 Jun 2020 16:09:18,882 INFO : 4% Done
23 Jun 2020 16:09:19,031 INFO : 5% Done
23 Jun 2020 16:09:19,105 INFO : 6% Done
23 Jun 2020 16:09:19,252 DEBUG: Total peptides inserted: 10
23 Jun 2020 16:09:19,290 INFO : Inserting sp|P01012|OVAL_CHICK
23 Jun 2020 16:09:19,293 INFO : 7% Done
23 Jun 2020 16:09:19,474 INFO : 8% Done
23 Jun 2020 16:09:19,549 DEBUG: Total peptides inserted: 3
23 Jun 2020 16:09:19,614 INFO : Inserting sp|O43396|TXNL1_HUMAN
23 Jun 2020 16:09:19,617 INFO : 9% Done
23 Jun 2020 16:09:19,710 DEBUG: Total peptides inserted: 1
23 Jun 2020 16:09:19,719 INFO : Inserting sp|P00352|AL1A1_HUMAN
23 Jun 2020 16:09:19,798 INFO : 10% Done
23 Jun 2020 16:09:19,886 INFO : 11% Done
23 Jun 2020 16:09:20,009 DEBUG: Total peptides inserted: 3
23 Jun 2020 16:09:20,018 INFO : Inserting sp|P00492|HPRT_HUMAN
23 Jun 2020 16:09:20,099 INFO : 12% Done
23 Jun 2020 16:09:20,176 INFO : 13% Done
23 Jun 2020 16:09:20,264 DEBUG: Total peptides inserted: 3
23 Jun 2020 16:09:20,272 INFO : Inserting sp|P06733|ENOA_HUMAN
23 Jun 2020 16:09:20,356 INFO : 14% Done
23 Jun 2020 16:09:20,465 INFO : 15% Done
23 Jun 2020 16:09:20,614 DEBUG: Total peptides inserted: 4
23 Jun 2020 16:09:20,622 INFO : Inserting sp|P06748|NPM_HUMAN
23 Jun 2020 16:09:20,625 INFO : 16% Done
23 Jun 2020 16:09:20,762 DEBUG: Total peptides inserted: 2
23 Jun 2020 16:09:20,771 INFO : Inserting sp|P08670|VIME_HUMAN
23 Jun 2020 16:09:20,774 INFO : 17% Done
23 Jun 2020 16:09:20,863 INFO : 18% Done
23 Jun 2020 16:09:20,951 INFO : 19% Done
23 Jun 2020 16:09:21,113 DEBUG: Total peptides inserted: 4
23 Jun 2020 16:09:21,121 INFO : Inserting sp|P09382|LEG1_HUMAN
23 Jun 2020 16:09:21,124 INFO : 20% Done
23 Jun 2020 16:09:21,213 INFO : 21% Done
23 Jun 2020 16:09:21,376 DEBUG: Total peptides inserted: 3
23 Jun 2020 16:09:21,384 INFO : Inserting sp|P09467|F16P1_HUMAN
23 Jun 2020 16:09:21,387 INFO : 22% Done
23 Jun 2020 16:09:21,475 INFO : 23% Done
23 Jun 2020 16:09:21,625 DEBUG: Total peptides inserted: 3
23 Jun 2020 16:09:21,633 INFO : Inserting sp|P12931|SRC_HUMAN
23 Jun 2020 16:09:21,636 INFO : 24% Done
23 Jun 2020 16:09:21,727 INFO : 25% Done
23 Jun 2020 16:09:21,901 DEBUG: Total peptides inserted: 3
23 Jun 2020 16:09:21,909 INFO : Inserting sp|P18669|PGAM1_HUMAN
23 Jun 2020 16:09:22,001 INFO : 26% Done
23 Jun 2020 16:09:22,149 DEBUG: Total peptides inserted: 3
23 Jun 2020 16:09:22,157 INFO : Inserting sp|P19338|NUCL_HUMAN
23 Jun 2020 16:09:22,160 INFO : 27% Done
23 Jun 2020 16:09:22,250 INFO : 28% Done
23 Jun 2020 16:09:22,414 INFO : 29% Done
23 Jun 2020 16:09:22,502 DEBUG: Total peptides inserted: 4
23 Jun 2020 16:09:22,510 INFO : Inserting sp|P20700|LMNB1_HUMAN
23 Jun 2020 16:09:22,513 INFO : 30% Done
23 Jun 2020 16:09:22,647 DEBUG: Total peptides inserted: 2
23 Jun 2020 16:09:22,655 INFO : Inserting sp|P26447|S10A4_HUMAN
23 Jun 2020 16:09:22,658 INFO : 31% Done
23 Jun 2020 16:09:22,748 INFO : 32% Done
23 Jun 2020 16:09:22,822 DEBUG: Total peptides inserted: 2
23 Jun 2020 16:09:22,839 INFO : Inserting sp|P40121|CAPG_HUMAN
23 Jun 2020 16:09:22,917 INFO : 33% Done
23 Jun 2020 16:09:23,082 INFO : 34% Done
23 Jun 2020 16:09:23,156 DEBUG: Total peptides inserted: 4
23 Jun 2020 16:09:23,178 INFO : Inserting sp|P61769|B2MG_HUMAN
23 Jun 2020 16:09:23,181 INFO : 35% Done
23 Jun 2020 16:09:23,343 INFO : 36% Done
23 Jun 2020 16:09:23,430 DEBUG: Total peptides inserted: 3
23 Jun 2020 16:09:23,438 INFO : Inserting sp|P61978|HNRPK_HUMAN
23 Jun 2020 16:09:23,441 INFO : 37% Done
23 Jun 2020 16:09:23,593 DEBUG: Total peptides inserted: 2
23 Jun 2020 16:09:23,619 INFO : Inserting sp|Q15019|SEPT2_HUMAN
23 Jun 2020 16:09:23,621 INFO : 38% Done
23 Jun 2020 16:09:23,698 INFO : 39% Done
23 Jun 2020 16:09:23,772 DEBUG: Total peptides inserted: 2
23 Jun 2020 16:09:23,780 INFO : Inserting sp|Q96C24|SYTL4_HUMAN
23 Jun 2020 16:09:23,789 INFO : Inserting sp|Q9BRF8|CPPED_HUMAN
23 Jun 2020 16:09:23,901 INFO : 40% Done
23 Jun 2020 16:09:23,975 INFO : 41% Done
23 Jun 2020 16:09:24,117 DEBUG: Total peptides inserted: 4
23 Jun 2020 16:09:24,125 INFO : Inserting sp|Q9H0R4|HDHD2_HUMAN
23 Jun 2020 16:09:24,128 INFO : 42% Done
23 Jun 2020 16:09:24,308 INFO : 43% Done
23 Jun 2020 16:09:24,395 DEBUG: Total peptides inserted: 3
23 Jun 2020 16:09:24,403 INFO : Inserting sp|Q9Y3F4|STRAP_HUMAN
23 Jun 2020 16:09:24,406 INFO : 44% Done
23 Jun 2020 16:09:24,556 INFO : 45% Done
23 Jun 2020 16:09:24,660 INFO : 46% Done
23 Jun 2020 16:09:24,811 DEBUG: Total peptides inserted: 5
23 Jun 2020 16:09:24,819 INFO : Inserting sp|P23381|SYWC_HUMAN
23 Jun 2020 16:09:24,822 INFO : 47% Done
23 Jun 2020 16:09:24,985 DEBUG: Total peptides inserted: 2
23 Jun 2020 16:09:24,993 INFO : Inserting sp|P04040|CATA_HUMAN
23 Jun 2020 16:09:24,996 INFO : 48% Done
23 Jun 2020 16:09:25,086 INFO : 49% Done
23 Jun 2020 16:09:25,177 INFO : 50% Done
23 Jun 2020 16:09:25,370 DEBUG: Total peptides inserted: 4
23 Jun 2020 16:09:25,422 INFO : Inserting sp|P06396|GELS_HUMAN
23 Jun 2020 16:09:25,425 INFO : 51% Done
23 Jun 2020 16:09:25,518 INFO : 52% Done
23 Jun 2020 16:09:25,607 INFO : 53% Done
23 Jun 2020 16:09:25,782 DEBUG: Total peptides inserted: 4
23 Jun 2020 16:09:25,790 INFO : Inserting sp|P08567|PLEK_HUMAN
23 Jun 2020 16:09:25,793 INFO : 54% Done
23 Jun 2020 16:09:25,870 INFO : 55% Done
23 Jun 2020 16:09:25,960 INFO : 56% Done
23 Jun 2020 16:09:26,137 DEBUG: Total peptides inserted: 4
23 Jun 2020 16:09:26,146 INFO : Inserting sp|P14317|HCLS1_HUMAN
23 Jun 2020 16:09:26,149 INFO : 57% Done
23 Jun 2020 16:09:26,287 INFO : 58% Done
23 Jun 2020 16:09:26,362 INFO : 59% Done
23 Jun 2020 16:09:26,449 DEBUG: Total peptides inserted: 4
23 Jun 2020 16:09:26,457 INFO : Inserting sp|P16401|H15_HUMAN
23 Jun 2020 16:09:26,552 INFO : 60% Done
23 Jun 2020 16:09:26,625 DEBUG: Total peptides inserted: 2
23 Jun 2020 16:09:26,633 INFO : Inserting sp|P22626|ROA2_HUMAN
23 Jun 2020 16:09:26,637 INFO : 61% Done
23 Jun 2020 16:09:26,816 INFO : 62% Done
23 Jun 2020 16:09:26,917 DEBUG: Total peptides inserted: 3
23 Jun 2020 16:09:26,945 INFO : Inserting sp|P26583|HMGB2_HUMAN
23 Jun 2020 16:09:26,948 INFO : 63% Done
23 Jun 2020 16:09:27,024 DEBUG: Total peptides inserted: 1
23 Jun 2020 16:09:27,032 INFO : Inserting sp|P26641|EF1G_HUMAN
23 Jun 2020 16:09:27,035 INFO : 64% Done
23 Jun 2020 16:09:27,210 INFO : 65% Done
23 Jun 2020 16:09:27,284 DEBUG: Total peptides inserted: 3
23 Jun 2020 16:09:27,305 INFO : Inserting sp|P27797|CALR_HUMAN
23 Jun 2020 16:09:27,309 INFO : 66% Done
23 Jun 2020 16:09:27,422 INFO : 67% Done
23 Jun 2020 16:09:27,525 INFO : 68% Done
23 Jun 2020 16:09:27,779 INFO : 69% Done
23 Jun 2020 16:09:27,865 DEBUG: Total peptides inserted: 5
23 Jun 2020 16:09:27,890 INFO : Inserting sp|P29350|PTN6_HUMAN
23 Jun 2020 16:09:27,894 INFO : 70% Done
23 Jun 2020 16:09:28,071 INFO : 71% Done
23 Jun 2020 16:09:28,159 INFO : 72% Done
23 Jun 2020 16:09:28,246 DEBUG: Total peptides inserted: 4
23 Jun 2020 16:09:28,274 INFO : Inserting sp|P29401|TKT_HUMAN
23 Jun 2020 16:09:28,277 INFO : 73% Done
23 Jun 2020 16:09:28,468 INFO : 74% Done
23 Jun 2020 16:09:28,643 DEBUG: Total peptides inserted: 4
23 Jun 2020 16:09:28,651 INFO : Inserting sp|P29692|EF1D_HUMAN
23 Jun 2020 16:09:28,672 INFO : Inserting sp|P31146|COR1A_HUMAN
23 Jun 2020 16:09:28,676 INFO : 75% Done
23 Jun 2020 16:09:28,769 INFO : 76% Done
23 Jun 2020 16:09:28,978 INFO : 77% Done
23 Jun 2020 16:09:29,080 DEBUG: Total peptides inserted: 4
23 Jun 2020 16:09:29,088 INFO : Inserting sp|P48643|TCPE_HUMAN
23 Jun 2020 16:09:29,091 INFO : 78% Done
23 Jun 2020 16:09:29,184 INFO : 79% Done
23 Jun 2020 16:09:29,361 INFO : 80% Done
23 Jun 2020 16:09:29,436 INFO : 81% Done
23 Jun 2020 16:09:29,523 DEBUG: Total peptides inserted: 5
23 Jun 2020 16:09:29,545 INFO : Inserting sp|P49407|ARRB1_HUMAN
23 Jun 2020 16:09:29,549 INFO : 82% Done
23 Jun 2020 16:09:29,752 DEBUG: Total peptides inserted: 2
23 Jun 2020 16:09:29,752 INFO : 83% Done
23 Jun 2020 16:09:29,766 INFO : Inserting sp|P54819|KAD2_HUMAN
23 Jun 2020 16:09:29,873 INFO : 84% Done
23 Jun 2020 16:09:30,011 DEBUG: Total peptides inserted: 2
23 Jun 2020 16:09:30,019 INFO : Inserting sp|P61626|LYSC_HUMAN
23 Jun 2020 16:09:30,023 INFO : 85% Done
23 Jun 2020 16:09:30,129 INFO : 86% Done
23 Jun 2020 16:09:30,312 DEBUG: Total peptides inserted: 3
23 Jun 2020 16:09:30,331 INFO : Inserting sp|Q15555|MARE2_HUMAN
23 Jun 2020 16:09:30,336 INFO : 87% Done
23 Jun 2020 16:09:30,417 INFO : 88% Done
23 Jun 2020 16:09:30,595 INFO : 89% Done
23 Jun 2020 16:09:30,668 DEBUG: Total peptides inserted: 4
23 Jun 2020 16:09:30,676 INFO : Inserting sp|Q15691|MARE1_HUMAN
23 Jun 2020 16:09:30,679 INFO : 90% Done
23 Jun 2020 16:09:30,843 INFO : 91% Done
23 Jun 2020 16:09:30,931 INFO : 92% Done
23 Jun 2020 16:09:31,006 DEBUG: Total peptides inserted: 4
23 Jun 2020 16:09:31,014 INFO : Inserting sp|Q15942|ZYX_HUMAN
23 Jun 2020 16:09:31,137 INFO : 93% Done
23 Jun 2020 16:09:31,226 INFO : 94% Done
23 Jun 2020 16:09:31,315 INFO : 95% Done
23 Jun 2020 16:09:31,492 DEBUG: Total peptides inserted: 5
23 Jun 2020 16:09:31,501 INFO : Inserting sp|Q9NUQ9|FA49B_HUMAN
23 Jun 2020 16:09:31,504 INFO : 96% Done
23 Jun 2020 16:09:31,594 INFO : 97% Done
23 Jun 2020 16:09:31,758 INFO : 98% Done
23 Jun 2020 16:09:31,831 DEBUG: Total peptides inserted: 4
23 Jun 2020 16:09:31,831 INFO : Done parsing Skyline document.
23 Jun 2020 16:09:31,833 INFO : Creating and populating temp tables for Proportion values
23 Jun 2020 16:09:31,950 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
23 Jun 2020 16:09:32,591 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
23 Jun 2020 16:09:32,868 INFO : Cleaning up temp tables
23 Jun 2020 16:09:32,886 INFO : Completed import of Skyline document from 20171010_JB_BM_rep_AM_filtered_2020-06-22_14-26-36.sky.zip
23 Jun 2020 16:09:32,888 INFO : 100% Done
23 Jun 2020 16:09:32,896 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/QIMRBerghofer%20-%20Identification%20of%20candidate%20circulating%20glucocorticoid%20response%20biomarkers%20in%20humans%20using%20a%20proteomic%20approach_c9b80e16-97d1-1038-8463-3013bb9b28b3/_temp__2020-06-23_16-08-46/export/xar/experiments_and_runs.xar.exploded/Run87451/20171010_JB_BM_rep_AM_filtered_2020-06-22_14-26-36.sky.zip into the system
23 Jun 2020 16:09:32,906 INFO : Done importing xar
23 Jun 2020 16:09:32,910 INFO : Loading pages and webpart properties
23 Jun 2020 16:09:33,017 INFO : Done importing pages and webpart properties
23 Jun 2020 16:09:33,018 INFO :
23 Jun 2020 16:09:33,018 INFO : Experiment import completed successfully.
23 Jun 2020 16:09:33,018 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
23 Jun 2020 16:09:33,074 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
23 Jun 2020 16:09:33,074 INFO :
23 Jun 2020 16:09:33,074 INFO : Finishing up experiment copy.
23 Jun 2020 16:09:33,075 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
23 Jun 2020 16:09:33,192 INFO : Updating access URL to point to the new copy of the data.
23 Jun 2020 16:09:33,233 INFO : Setting the 'copied' timestamp on the JournalExperiment table.
23 Jun 2020 16:09:33,263 INFO : Removing copy permissions given to journal.
23 Jun 2020 16:09:33,348 INFO : Adding read permissions to all users that are folder admins in the source container.
23 Jun 2020 16:09:33,405 INFO : Setting the TargetedMS folder type to 'Experimental Data'
23 Jun 2020 16:09:33,423 INFO : Updating the 'Raw Data' tab configuration
23 Jun 2020 16:09:33,430 INFO : Updating dataFileUrls for run 20171010_JB_BM_rep_AM_filtered_2020-06-22_14-26-36.sky.zip; targetedms run ID 89541
23 Jun 2020 16:09:33,431 INFO : Updating dataFileUrl...
23 Jun 2020 16:09:33,431 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/QIMRBerghofer%20-%20Identification%20of%20candidate%20circulating%20glucocorticoid%20response%20biomarkers%20in%20humans%20using%20a%20proteomic%20approach_c9b80e16-97d1-1038-8463-3013bb9b28b3/_temp__2020-06-23_16-08-46/export/xar/experiments_and_runs.xar.exploded/Run87451/20171010_JB_BM_rep_AM_filtered_2020-06-22_14-26-36/20171010_JB_BM_rep_AM_filtered.skyd
23 Jun 2020 16:09:33,431 INFO : to: file:///data/labkey/files/Panorama%20Public/2020/QIMRBerghofer%20-%20Identification%20of%20candidate%20circulating%20glucocorticoid%20response%20biomarkers%20in%20humans%20using%20a%20proteomic%20approach/@files/20171010_JB_BM_rep_AM_filtered_2020-06-22_14-26-36/20171010_JB_BM_rep_AM_filtered.skyd
23 Jun 2020 16:09:33,437 INFO : Updating dataFileUrl...
23 Jun 2020 16:09:33,437 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/QIMRBerghofer%20-%20Identification%20of%20candidate%20circulating%20glucocorticoid%20response%20biomarkers%20in%20humans%20using%20a%20proteomic%20approach_c9b80e16-97d1-1038-8463-3013bb9b28b3/_temp__2020-06-23_16-08-46/export/xar/experiments_and_runs.xar.exploded/Run87451/20171010_JB_BM_rep_AM_filtered_2020-06-22_14-26-36.sky.zip
23 Jun 2020 16:09:33,438 INFO : to: file:///data/labkey/files/Panorama%20Public/2020/QIMRBerghofer%20-%20Identification%20of%20candidate%20circulating%20glucocorticoid%20response%20biomarkers%20in%20humans%20using%20a%20proteomic%20approach/@files/20171010_JB_BM_rep_AM_filtered_2020-06-22_14-26-36.sky.zip
23 Jun 2020 16:09:33,468 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'