19 Oct 2020 17:33:59,141 INFO : Copying experiment "The AML microenvironment catalyzes a step-wise evolution to gilteritinib resistance" from folder /PNNL/PTRC to /Panorama Public/2020/PNNL - PTRC
19 Oct 2020 17:33:59,142 INFO : =======================================
19 Oct 2020 17:33:59,370 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
19 Oct 2020 17:33:59,371 INFO :
19 Oct 2020 17:33:59,371 INFO : Exporting experiment.
19 Oct 2020 17:34:53,388 INFO :
19 Oct 2020 17:34:53,388 INFO : Experiment export completed successfully.
19 Oct 2020 17:34:53,388 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
19 Oct 2020 17:34:53,502 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
19 Oct 2020 17:34:53,502 INFO :
19 Oct 2020 17:34:53,502 INFO : Importing experiment.
19 Oct 2020 17:34:53,509 INFO : Loading folder properties (folder type, settings and active modules)
19 Oct 2020 17:34:53,775 INFO : Done importing folder properties (folder type, settings and active modules)
19 Oct 2020 17:34:53,778 INFO : Loading etl definitions
19 Oct 2020 17:34:53,781 INFO : Loading wikis
19 Oct 2020 17:34:53,783 INFO : 0 wikis imported
19 Oct 2020 17:34:53,783 INFO : Done importing wikis
19 Oct 2020 17:34:53,783 INFO : Starting to copy files
19 Oct 2020 17:35:44,467 INFO : Copied 30 files
19 Oct 2020 17:35:44,467 INFO : Ensuring exp.data rows exist for imported files
19 Oct 2020 17:35:45,146 INFO : Loading xar
19 Oct 2020 17:35:47,328 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-7737:TargetedMS.ImportSkyZip'
19 Oct 2020 17:35:47,336 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-7737:TargetedMS.ImportSkyZip.Core'
19 Oct 2020 17:35:47,344 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-7737:TargetedMS.ImportSkyZip.Output'
19 Oct 2020 17:35:47,344 DEBUG: Protocol import complete
19 Oct 2020 17:35:47,437 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-7737:The+AML+microenvironment+catalyzes+a+step-wise+evolution+to+gilteritinib+resistance'
19 Oct 2020 17:35:47,437 DEBUG: Experiment/Run group import complete
19 Oct 2020 17:35:47,491 DEBUG: Protocol action set import complete
19 Oct 2020 17:35:47,565 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7737:TargetedMS.ImportSkyZip'
19 Oct 2020 17:35:47,670 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-7737:8f6cccb7-e0ba-1038-9455-3013bb9b8170'
19 Oct 2020 17:35:47,682 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-7737:8f6ccc86-e0ba-1038-9455-3013bb9b8170'
19 Oct 2020 17:35:47,683 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7737:TargetedMS.ImportSkyZip.Core'
19 Oct 2020 17:35:47,692 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7737:TargetedMS.ImportSkyZip.Output'
19 Oct 2020 17:35:47,693 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-7737:8f6cce82-e0ba-1038-9455-3013bb9b8170'
19 Oct 2020 17:35:47,697 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20PTRC_cd7bc856-f496-1038-9455-3013bb9b8170/_temp__2020-10-19_17-33-58/export/xar/experiments_and_runs.xar.exploded/Run92664/PTRC_June2020_2020-09-24_10-41-45/PTRC_June2020.skyd into the system
19 Oct 2020 17:35:47,699 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20PTRC_cd7bc856-f496-1038-9455-3013bb9b8170/_temp__2020-10-19_17-33-58/export/xar/experiments_and_runs.xar.exploded/Run92664/PTRC_June2020_2020-09-24_10-41-45/PTRC_June2020.skyd into the system
19 Oct 2020 17:35:47,699 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20PTRC_cd7bc856-f496-1038-9455-3013bb9b8170/_temp__2020-10-19_17-33-58/export/xar/experiments_and_runs.xar.exploded/Run92664/PTRC_June2020_2020-09-24_10-41-45.sky.zip into the system
19 Oct 2020 17:35:47,702 INFO : Starting import from PTRC_June2020_2020-09-24_10-41-45.sky.zip
19 Oct 2020 17:35:47,712 INFO : Starting to import Skyline document from PTRC_June2020_2020-09-24_10-41-45.sky.zip
19 Oct 2020 17:35:47,780 INFO : Expanding PTRC_June2020.skyd
19 Oct 2020 17:35:48,813 INFO : Expanding PTRC_June2020.sky.view
19 Oct 2020 17:35:48,814 INFO : Expanding PTRC_June2020.sky
19 Oct 2020 17:35:48,906 WARN : The version of this Skyline document is 20.14. This is newer than the highest supported version 4.1
19 Oct 2020 17:35:50,216 INFO : Inserting PRKAB1
19 Oct 2020 17:35:50,314 INFO : 1% Done
19 Oct 2020 17:35:51,099 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:35:51,099 INFO : Inserting PRKAA1
19 Oct 2020 17:35:51,114 INFO : 2% Done
19 Oct 2020 17:35:51,758 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:35:51,759 INFO : Inserting PRKAA2
19 Oct 2020 17:35:52,168 INFO : 3% Done
19 Oct 2020 17:35:52,420 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:35:52,420 INFO : Inserting ABCD1
19 Oct 2020 17:35:52,836 INFO : 4% Done
19 Oct 2020 17:35:52,960 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:35:52,961 INFO : Inserting ACADM
19 Oct 2020 17:35:53,457 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:35:53,457 INFO : Inserting ACADVL
19 Oct 2020 17:35:53,467 INFO : 5% Done
19 Oct 2020 17:35:54,195 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:35:54,195 INFO : Inserting ACOT2
19 Oct 2020 17:35:54,223 INFO : 6% Done
19 Oct 2020 17:35:54,725 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:35:54,726 INFO : Inserting ACOT8
19 Oct 2020 17:35:55,000 INFO : 7% Done
19 Oct 2020 17:35:55,262 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:35:55,263 INFO : Inserting ACSS2
19 Oct 2020 17:35:55,590 INFO : 8% Done
19 Oct 2020 17:35:55,862 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:35:55,862 INFO : Inserting ACSF2
19 Oct 2020 17:35:56,402 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:35:56,402 INFO : Inserting ACSL1
19 Oct 2020 17:35:56,413 INFO : 9% Done
19 Oct 2020 17:35:56,910 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:35:56,910 INFO : Inserting ACSL4
19 Oct 2020 17:35:56,921 INFO : 10% Done
19 Oct 2020 17:35:57,525 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:35:57,526 INFO : Inserting ACSL5
19 Oct 2020 17:35:57,536 INFO : 11% Done
19 Oct 2020 17:35:58,163 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:35:58,163 INFO : Inserting AKT1
19 Oct 2020 17:35:58,186 INFO : 12% Done
19 Oct 2020 17:35:58,715 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:35:58,715 INFO : Inserting ALDH1A3
19 Oct 2020 17:35:59,089 INFO : 13% Done
19 Oct 2020 17:35:59,322 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:35:59,322 INFO : Inserting ALDH7A1
19 Oct 2020 17:35:59,636 INFO : 14% Done
19 Oct 2020 17:35:59,878 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:35:59,878 INFO : Inserting AMBRA
19 Oct 2020 17:36:00,804 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:00,805 INFO : Inserting ANAPC1
19 Oct 2020 17:36:00,827 INFO : 15% Done
19 Oct 2020 17:36:01,313 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:01,314 INFO : Inserting ANAPC4
19 Oct 2020 17:36:01,324 INFO : 16% Done
19 Oct 2020 17:36:01,863 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:01,863 INFO : Inserting APOM
19 Oct 2020 17:36:02,098 INFO : 17% Done
19 Oct 2020 17:36:02,768 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:02,768 INFO : Inserting ARID1A
19 Oct 2020 17:36:03,347 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:03,353 INFO : 18% Done
19 Oct 2020 17:36:03,353 INFO : Inserting ARID1B
19 Oct 2020 17:36:03,888 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:03,888 INFO : Inserting ARID4B
19 Oct 2020 17:36:03,899 INFO : 19% Done
19 Oct 2020 17:36:04,435 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:04,435 INFO : Inserting ARID2
19 Oct 2020 17:36:04,445 INFO : 20% Done
19 Oct 2020 17:36:05,037 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:05,037 INFO : Inserting ASF1A
19 Oct 2020 17:36:05,057 INFO : 21% Done
19 Oct 2020 17:36:05,573 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:05,573 INFO : Inserting ASF1B
19 Oct 2020 17:36:05,813 INFO : 22% Done
19 Oct 2020 17:36:06,139 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:06,139 INFO : Inserting ATF4
19 Oct 2020 17:36:06,431 INFO : 23% Done
19 Oct 2020 17:36:06,666 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:06,667 INFO : Inserting ATP5F1C
19 Oct 2020 17:36:07,177 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:07,177 INFO : Inserting AURKA
19 Oct 2020 17:36:07,198 INFO : 24% Done
19 Oct 2020 17:36:07,735 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:07,736 INFO : Inserting AURKB
19 Oct 2020 17:36:07,753 INFO : 25% Done
19 Oct 2020 17:36:08,431 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:08,431 INFO : Inserting BAD
19 Oct 2020 17:36:08,674 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:08,674 INFO : Inserting BAX
19 Oct 2020 17:36:08,806 INFO : 26% Done
19 Oct 2020 17:36:09,043 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:09,043 INFO : Inserting BCL2
19 Oct 2020 17:36:09,276 INFO : 27% Done
19 Oct 2020 17:36:09,482 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:09,482 INFO : Inserting BECN1
19 Oct 2020 17:36:10,102 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:10,103 INFO : Inserting BRAF
19 Oct 2020 17:36:10,121 INFO : 28% Done
19 Oct 2020 17:36:10,546 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:10,546 INFO : Inserting BUB1B
19 Oct 2020 17:36:10,689 INFO : 29% Done
19 Oct 2020 17:36:11,087 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:11,088 INFO : Inserting CRAT
19 Oct 2020 17:36:11,377 INFO : 30% Done
19 Oct 2020 17:36:11,615 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:11,616 INFO : Inserting CBL
19 Oct 2020 17:36:11,900 INFO : 31% Done
19 Oct 2020 17:36:12,167 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:12,168 INFO : Inserting CCNB1
19 Oct 2020 17:36:12,454 INFO : 32% Done
19 Oct 2020 17:36:12,688 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:12,688 INFO : Inserting CCNB2
19 Oct 2020 17:36:12,979 INFO : 33% Done
19 Oct 2020 17:36:13,359 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:13,359 INFO : Inserting CCND3
19 Oct 2020 17:36:13,907 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:13,907 INFO : Inserting CCNT2
19 Oct 2020 17:36:13,917 INFO : 34% Done
19 Oct 2020 17:36:14,156 DEBUG: Total peptides inserted: 1
19 Oct 2020 17:36:14,156 INFO : Inserting CD36
19 Oct 2020 17:36:14,432 INFO : 35% Done
19 Oct 2020 17:36:14,689 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:14,689 INFO : Inserting CDK1
19 Oct 2020 17:36:15,265 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:15,265 INFO : Inserting CDK2
19 Oct 2020 17:36:15,274 INFO : 36% Done
19 Oct 2020 17:36:15,779 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:15,779 INFO : Inserting CDK4
19 Oct 2020 17:36:15,789 INFO : 37% Done
19 Oct 2020 17:36:16,396 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:16,396 INFO : Inserting CDK5
19 Oct 2020 17:36:16,419 INFO : 38% Done
19 Oct 2020 17:36:16,985 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:16,985 INFO : Inserting CDK6
19 Oct 2020 17:36:16,995 INFO : 39% Done
19 Oct 2020 17:36:17,538 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:17,539 INFO : Inserting CDK7
19 Oct 2020 17:36:17,848 INFO : 40% Done
19 Oct 2020 17:36:18,109 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:18,109 INFO : Inserting CDK9
19 Oct 2020 17:36:18,439 INFO : 41% Done
19 Oct 2020 17:36:18,697 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:18,697 INFO : Inserting CPT1A
19 Oct 2020 17:36:19,043 INFO : 42% Done
19 Oct 2020 17:36:19,302 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:19,302 INFO : Inserting CPT1C
19 Oct 2020 17:36:19,718 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:19,718 INFO : Inserting CPT2
19 Oct 2020 17:36:19,728 INFO : 43% Done
19 Oct 2020 17:36:20,217 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:20,217 INFO : Inserting CTGF
19 Oct 2020 17:36:20,236 INFO : 44% Done
19 Oct 2020 17:36:20,691 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:20,691 INFO : Inserting CYBB
19 Oct 2020 17:36:20,979 INFO : 45% Done
19 Oct 2020 17:36:21,230 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:21,231 INFO : Inserting LIG1
19 Oct 2020 17:36:21,524 INFO : 46% Done
19 Oct 2020 17:36:22,349 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:22,349 INFO : Inserting DNMT3A
19 Oct 2020 17:36:22,866 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:22,866 INFO : Inserting DNMT1
19 Oct 2020 17:36:22,877 INFO : 47% Done
19 Oct 2020 17:36:23,365 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:23,365 INFO : Inserting DOT1L
19 Oct 2020 17:36:23,415 INFO : 48% Done
19 Oct 2020 17:36:23,996 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:23,996 INFO : Inserting E2F3
19 Oct 2020 17:36:24,031 INFO : 49% Done
19 Oct 2020 17:36:24,507 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:24,507 INFO : Inserting FABP4
19 Oct 2020 17:36:24,778 INFO : 50% Done
19 Oct 2020 17:36:25,005 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:25,005 INFO : Inserting FABP5
19 Oct 2020 17:36:25,281 INFO : 51% Done
19 Oct 2020 17:36:25,521 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:25,521 INFO : Inserting FASN
19 Oct 2020 17:36:25,766 INFO : 52% Done
19 Oct 2020 17:36:26,057 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:26,058 INFO : Inserting AFP
19 Oct 2020 17:36:26,516 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:26,516 INFO : Inserting FLT3
19 Oct 2020 17:36:26,541 INFO : 53% Done
19 Oct 2020 17:36:27,046 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:27,046 INFO : Inserting GSK3B
19 Oct 2020 17:36:27,084 INFO : 54% Done
19 Oct 2020 17:36:27,566 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:27,567 INFO : Inserting HIPK2
19 Oct 2020 17:36:27,597 INFO : 55% Done
19 Oct 2020 17:36:28,064 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:28,064 INFO : Inserting MAPK4
19 Oct 2020 17:36:28,490 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:28,491 INFO : Inserting KAT5
19 Oct 2020 17:36:28,549 INFO : 56% Done
19 Oct 2020 17:36:29,086 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:29,086 INFO : Inserting PRKCA
19 Oct 2020 17:36:29,096 INFO : 57% Done
19 Oct 2020 17:36:29,710 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:29,710 INFO : Inserting LAMTOR4
19 Oct 2020 17:36:30,038 INFO : 58% Done
19 Oct 2020 17:36:30,257 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:30,258 INFO : Inserting MAPKAPK3
19 Oct 2020 17:36:30,520 INFO : 59% Done
19 Oct 2020 17:36:30,764 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:30,764 INFO : Inserting MCM3
19 Oct 2020 17:36:31,028 INFO : 60% Done
19 Oct 2020 17:36:31,263 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:31,263 INFO : Inserting MCM7
19 Oct 2020 17:36:31,781 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:31,782 INFO : Inserting MAPK7
19 Oct 2020 17:36:31,791 INFO : 61% Done
19 Oct 2020 17:36:32,284 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:32,284 INFO : Inserting MAPK8
19 Oct 2020 17:36:32,334 INFO : 62% Done
19 Oct 2020 17:36:32,843 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:32,843 INFO : Inserting MAPK9
19 Oct 2020 17:36:33,071 INFO : 63% Done
19 Oct 2020 17:36:33,322 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:33,322 INFO : Inserting MAPK11
19 Oct 2020 17:36:33,543 INFO : 64% Done
19 Oct 2020 17:36:33,779 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:33,779 INFO : Inserting MAPK12
19 Oct 2020 17:36:34,462 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:34,462 INFO : Inserting MAPK14
19 Oct 2020 17:36:34,472 INFO : 65% Done
19 Oct 2020 17:36:34,974 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:34,974 INFO : Inserting MAP2K1
19 Oct 2020 17:36:34,997 INFO : 66% Done
19 Oct 2020 17:36:35,534 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:35,535 INFO : Inserting MAP2K2
19 Oct 2020 17:36:35,544 INFO : 67% Done
19 Oct 2020 17:36:36,047 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:36,047 INFO : Inserting MAP2K3
19 Oct 2020 17:36:36,056 INFO : 68% Done
19 Oct 2020 17:36:36,585 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:36,585 INFO : Inserting MAP2K4
19 Oct 2020 17:36:37,151 INFO : 69% Done
19 Oct 2020 17:36:37,401 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:37,401 INFO : Inserting MAP2K5
19 Oct 2020 17:36:37,789 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:37,789 INFO : Inserting MAP2K6
19 Oct 2020 17:36:37,799 INFO : 70% Done
19 Oct 2020 17:36:38,281 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:38,281 INFO : Inserting MAP2K7
19 Oct 2020 17:36:38,291 INFO : 71% Done
19 Oct 2020 17:36:38,793 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:38,794 INFO : Inserting MTOR
19 Oct 2020 17:36:39,078 INFO : 72% Done
19 Oct 2020 17:36:39,330 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:39,330 INFO : Inserting ADIPOR1
19 Oct 2020 17:36:39,538 INFO : 73% Done
19 Oct 2020 17:36:39,828 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:39,828 INFO : Inserting PDPK1
19 Oct 2020 17:36:40,122 INFO : 74% Done
19 Oct 2020 17:36:40,367 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:40,367 INFO : Inserting PIM1
19 Oct 2020 17:36:40,841 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:40,841 INFO : Inserting PIM2
19 Oct 2020 17:36:41,984 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:41,984 INFO : Inserting PPARA
19 Oct 2020 17:36:42,515 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:42,515 INFO : Inserting PPARG
19 Oct 2020 17:36:42,527 INFO : 75% Done
19 Oct 2020 17:36:43,021 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:43,022 INFO : Inserting PTPN11
19 Oct 2020 17:36:43,365 INFO : 76% Done
19 Oct 2020 17:36:43,589 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:43,590 INFO : Inserting PTPN12
19 Oct 2020 17:36:43,824 INFO : 77% Done
19 Oct 2020 17:36:44,066 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:44,067 INFO : Inserting MAP3K8
19 Oct 2020 17:36:44,530 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:44,531 INFO : Inserting RAF1
19 Oct 2020 17:36:44,550 INFO : 78% Done
19 Oct 2020 17:36:45,036 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:45,037 INFO : Inserting RARA
19 Oct 2020 17:36:45,047 INFO : 79% Done
19 Oct 2020 17:36:45,501 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:45,501 INFO : Inserting KRAS
19 Oct 2020 17:36:45,524 INFO : 80% Done
19 Oct 2020 17:36:46,044 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:46,044 INFO : Imported 100 peptide groups.
19 Oct 2020 17:36:46,044 INFO : Inserting NRAS
19 Oct 2020 17:36:46,312 INFO : 81% Done
19 Oct 2020 17:36:46,576 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:46,576 INFO : Inserting RXRA
19 Oct 2020 17:36:46,829 INFO : 82% Done
19 Oct 2020 17:36:47,110 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:47,111 INFO : Inserting RXRB
19 Oct 2020 17:36:47,368 INFO : 83% Done
19 Oct 2020 17:36:47,634 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:47,635 INFO : Inserting SGK1
19 Oct 2020 17:36:48,307 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:48,307 INFO : Inserting SPRY3
19 Oct 2020 17:36:48,332 INFO : 84% Done
19 Oct 2020 17:36:48,813 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:48,813 INFO : Inserting SRC
19 Oct 2020 17:36:49,089 INFO : 85% Done
19 Oct 2020 17:36:49,344 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:49,345 INFO : Inserting ACAT2
19 Oct 2020 17:36:49,724 INFO : 86% Done
19 Oct 2020 17:36:50,039 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:50,040 INFO : Inserting ACAA1
19 Oct 2020 17:36:50,639 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:50,639 INFO : Inserting ACAT1
19 Oct 2020 17:36:50,649 INFO : 87% Done
19 Oct 2020 17:36:51,194 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:51,195 INFO : Inserting ACAA2
19 Oct 2020 17:36:51,268 INFO : 88% Done
19 Oct 2020 17:36:51,780 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:51,781 INFO : Inserting TXNRD1
19 Oct 2020 17:36:51,809 INFO : 89% Done
19 Oct 2020 17:36:52,295 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:52,296 INFO : Inserting ZBTB7A
19 Oct 2020 17:36:52,576 INFO : 90% Done
19 Oct 2020 17:36:52,811 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:52,812 INFO : Inserting MCL1
19 Oct 2020 17:36:53,055 INFO : 91% Done
19 Oct 2020 17:36:53,270 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:53,270 INFO : Inserting NEK6
19 Oct 2020 17:36:53,791 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:53,791 INFO : Inserting ETNK2
19 Oct 2020 17:36:53,817 INFO : 92% Done
19 Oct 2020 17:36:54,192 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:54,192 INFO : Inserting BARD1
19 Oct 2020 17:36:54,557 INFO : 93% Done
19 Oct 2020 17:36:54,810 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:54,811 INFO : Inserting CHEK1
19 Oct 2020 17:36:55,115 INFO : 94% Done
19 Oct 2020 17:36:55,359 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:55,359 INFO : Inserting CHMP4C
19 Oct 2020 17:36:55,748 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:55,748 INFO : Inserting PABPC1
19 Oct 2020 17:36:55,766 INFO : 95% Done
19 Oct 2020 17:36:56,253 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:56,254 INFO : Inserting MCAK
19 Oct 2020 17:36:56,271 INFO : 96% Done
19 Oct 2020 17:36:56,779 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:56,780 INFO : Inserting STIL
19 Oct 2020 17:36:57,032 INFO : 97% Done
19 Oct 2020 17:36:57,276 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:57,276 INFO : Inserting CENPU
19 Oct 2020 17:36:57,552 INFO : 98% Done
19 Oct 2020 17:36:57,814 DEBUG: Total peptides inserted: 2
19 Oct 2020 17:36:57,814 INFO : Inserting AKR1C1
19 Oct 2020 17:36:58,019 DEBUG: Total peptides inserted: 1
19 Oct 2020 17:36:58,019 INFO : Done parsing Skyline document.
19 Oct 2020 17:36:58,022 INFO : Creating and populating temp tables for Proportion values
19 Oct 2020 17:36:58,356 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
19 Oct 2020 17:36:59,636 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
19 Oct 2020 17:37:00,439 INFO : Cleaning up temp tables
19 Oct 2020 17:37:00,984 INFO : Completed import of Skyline document from PTRC_June2020_2020-09-24_10-41-45.sky.zip
19 Oct 2020 17:37:00,993 INFO : 100% Done
19 Oct 2020 17:37:01,006 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20PTRC_cd7bc856-f496-1038-9455-3013bb9b8170/_temp__2020-10-19_17-33-58/export/xar/experiments_and_runs.xar.exploded/Run92664/PTRC_June2020_2020-09-24_10-41-45.sky.zip into the system
19 Oct 2020 17:37:01,073 INFO : Done importing xar
19 Oct 2020 17:37:01,083 INFO : Loading pages and webpart properties
19 Oct 2020 17:37:01,352 INFO : Done importing pages and webpart properties
19 Oct 2020 17:37:01,352 INFO :
19 Oct 2020 17:37:01,352 INFO : Experiment import completed successfully.
19 Oct 2020 17:37:01,353 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
19 Oct 2020 17:37:01,563 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
19 Oct 2020 17:37:01,563 INFO :
19 Oct 2020 17:37:01,563 INFO : Finishing up experiment copy.
19 Oct 2020 17:37:01,583 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
19 Oct 2020 17:37:01,587 INFO : Assigning a ProteomeXchange ID.
19 Oct 2020 17:37:02,894 INFO : Updating access URL to point to the new copy of the data.
19 Oct 2020 17:37:03,102 INFO : Setting the 'copied' timestamp and journalExperimentId on the JournalExperiment table.
19 Oct 2020 17:37:03,370 INFO : Removing copy permissions given to journal.
19 Oct 2020 17:37:03,551 INFO : Adding read permissions to all users that are folder admins in the source container.
19 Oct 2020 17:37:03,580 INFO : Setting the TargetedMS folder type to 'Experimental Data'
19 Oct 2020 17:37:03,587 INFO : Updating the 'Raw Data' tab configuration
19 Oct 2020 17:37:03,594 INFO : Updating dataFileUrls for run PTRC_June2020_2020-09-24_10-41-45.sky.zip; targetedms run ID 95894
19 Oct 2020 17:37:03,595 INFO : Updating dataFileUrl...
19 Oct 2020 17:37:03,596 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20PTRC_cd7bc856-f496-1038-9455-3013bb9b8170/_temp__2020-10-19_17-33-58/export/xar/experiments_and_runs.xar.exploded/Run92664/PTRC_June2020_2020-09-24_10-41-45/PTRC_June2020.skyd
19 Oct 2020 17:37:03,596 INFO : to: file:///data/labkey/files/Panorama%20Public/2020/PNNL%20-%20PTRC/@files/PTRC_June2020_2020-09-24_10-41-45/PTRC_June2020.skyd
19 Oct 2020 17:37:03,602 INFO : Updating dataFileUrl...
19 Oct 2020 17:37:03,602 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20PTRC_cd7bc856-f496-1038-9455-3013bb9b8170/_temp__2020-10-19_17-33-58/export/xar/experiments_and_runs.xar.exploded/Run92664/PTRC_June2020_2020-09-24_10-41-45.sky.zip
19 Oct 2020 17:37:03,602 INFO : to: file:///data/labkey/files/Panorama%20Public/2020/PNNL%20-%20PTRC/@files/PTRC_June2020_2020-09-24_10-41-45.sky.zip
19 Oct 2020 17:37:03,623 INFO : Creating a reviewer account.
19 Oct 2020 17:37:04,806 INFO : Created reviewer with email: User panorama+ptrc@proteinms.net
19 Oct 2020 17:37:04,829 INFO : Hiding the Data Pipeline tab.
19 Oct 2020 17:37:05,263 INFO : Emailing submitter.
19 Oct 2020 17:37:06,332 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'