Copying experiment: Targeted quantification of phosphorylation sites in S. macrospora wildtype and STRIPAK-mutants: /Panorama Public/2020/ISAS Protein Dynamics

Copying experiment: Targeted quantification of phosphorylation sites in S. macrospora wildtype and STRIPAK-mutants

ISAS Protein Dynamics - Stein et al. KIN3 2020

Job Status

Created:

2020-12-14 21:01:40

Modified:

2021-04-15 19:36:24

Email:

kaipot@uw.edu

Status:

COMPLETE

Info:

Description:

Copying experiment: Targeted quantification of phosphorylation sites in S. macrospora wildtype and STRIPAK-mutants

File Path:

/data/labkey/files/Panorama Public/2020/ISAS Protein Dynamics - Stein et al. KIN3 2020/@files/Experiment_1137.log

Files:

Experiment_1137.log

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Log File

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14 Dec 2020 21:01:40,507 INFO : Copying experiment "Targeted quantification of phosphorylation sites in S. macrospora wildtype and STRIPAK-mutants" from folder /ISAS - Protein Dynamics/Stein et al. KIN3 2020 to /Panorama Public/2020/ISAS Protein Dynamics - Stein et al. KIN3 2020

14 Dec 2020 21:01:40,507 INFO : =======================================

14 Dec 2020 21:19:43,664 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'

14 Dec 2020 21:19:43,664 INFO :

14 Dec 2020 21:19:43,664 INFO : Exporting experiment.

14 Dec 2020 21:26:42,571 INFO :

14 Dec 2020 21:26:42,581 INFO : Experiment export completed successfully.

14 Dec 2020 21:26:42,581 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'

14 Dec 2020 21:26:42,659 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'

14 Dec 2020 21:26:42,659 INFO :

14 Dec 2020 21:26:42,659 INFO : Importing experiment.

14 Dec 2020 21:26:42,671 INFO : Loading folder properties (folder type, settings and active modules)

14 Dec 2020 21:26:42,976 INFO : Done importing folder properties (folder type, settings and active modules)

14 Dec 2020 21:26:42,983 INFO : Loading etl definitions

14 Dec 2020 21:26:42,989 INFO : Loading wikis

14 Dec 2020 21:26:42,993 INFO : 0 wikis imported

14 Dec 2020 21:26:42,993 INFO : Done importing wikis

14 Dec 2020 21:26:42,993 INFO : Starting to copy files

14 Dec 2020 21:28:46,913 INFO : 57 files copied, now copying qExHF01_08380_WT-2.raw

14 Dec 2020 21:29:44,351 INFO : 67 files copied, now copying qExHF01_05135_HILIC_F2.raw

14 Dec 2020 21:30:56,474 INFO : 79 files copied, now copying QExactiveHF02_08409_DS3-1.raw

14 Dec 2020 21:32:58,577 INFO : 107 files copied, now copying QExactiveHF02_08400_DS6-1.raw

14 Dec 2020 21:33:07,493 INFO : 109 files copied, now copying QExactiveHF02_08490_pro11-3.raw

14 Dec 2020 21:34:12,480 INFO : Copied 136 files

14 Dec 2020 21:34:12,480 INFO : Ensuring exp.data rows exist for imported files

14 Dec 2020 21:34:15,251 INFO : Loading xar

14 Dec 2020 21:34:20,535 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-7984:TargetedMS.ImportSkyZip'

14 Dec 2020 21:34:20,543 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-7984:TargetedMS.ImportSkyZip.Core'

14 Dec 2020 21:34:20,550 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-7984:TargetedMS.ImportSkyZip.Output'

14 Dec 2020 21:34:20,550 DEBUG: Protocol import complete

14 Dec 2020 21:34:20,601 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-7984:Targeted+quantification+of+phosphorylation+sites+in+S.+macrospora+wildtype+and+STRIPAK-mutants'

14 Dec 2020 21:34:20,601 DEBUG: Experiment/Run group import complete

14 Dec 2020 21:34:20,646 DEBUG: Protocol action set import complete

14 Dec 2020 21:34:20,683 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7984:TargetedMS.ImportSkyZip'

14 Dec 2020 21:34:20,767 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-7984:1201515c-16db-1039-927b-3013bb9ba7ed'

14 Dec 2020 21:34:20,796 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-7984:12015b67-16db-1039-927b-3013bb9ba7ed'

14 Dec 2020 21:34:20,796 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7984:TargetedMS.ImportSkyZip.Core'

14 Dec 2020 21:34:20,805 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7984:TargetedMS.ImportSkyZip.Output'

14 Dec 2020 21:34:20,806 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-7984:12015c0c-16db-1039-927b-3013bb9ba7ed'

14 Dec 2020 21:34:20,824 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7984:TargetedMS.ImportSkyZip'

14 Dec 2020 21:34:20,839 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-7984:1201552f-16db-1039-927b-3013bb9ba7ed'

14 Dec 2020 21:34:20,850 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-7984:12015987-16db-1039-927b-3013bb9ba7ed'

14 Dec 2020 21:34:20,850 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7984:TargetedMS.ImportSkyZip.Core'

14 Dec 2020 21:34:20,856 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7984:TargetedMS.ImportSkyZip.Output'

14 Dec 2020 21:34:20,858 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-7984:12015b17-16db-1039-927b-3013bb9ba7ed'

14 Dec 2020 21:34:20,875 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7984:TargetedMS.ImportSkyZip'

14 Dec 2020 21:34:20,889 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-7984:1201518a-16db-1039-927b-3013bb9ba7ed'

14 Dec 2020 21:34:20,900 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-7984:12015800-16db-1039-927b-3013bb9ba7ed'

14 Dec 2020 21:34:20,900 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7984:TargetedMS.ImportSkyZip.Core'

14 Dec 2020 21:34:20,906 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7984:TargetedMS.ImportSkyZip.Output'

14 Dec 2020 21:34:20,907 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-7984:1201592c-16db-1039-927b-3013bb9ba7ed'

14 Dec 2020 21:34:20,926 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7984:TargetedMS.ImportSkyZip'

14 Dec 2020 21:34:20,939 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-7984:120153b2-16db-1039-927b-3013bb9ba7ed'

14 Dec 2020 21:34:20,950 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-7984:12015743-16db-1039-927b-3013bb9ba7ed'

14 Dec 2020 21:34:20,950 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7984:TargetedMS.ImportSkyZip.Core'

14 Dec 2020 21:34:20,956 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7984:TargetedMS.ImportSkyZip.Output'

14 Dec 2020 21:34:20,957 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-7984:120157c7-16db-1039-927b-3013bb9ba7ed'

14 Dec 2020 21:34:20,960 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/ISAS%20Protein%20Dynamics%20-%20Stein%20et%20al.%20KIN3%202020_deb98bbd-20bf-1039-927b-3013bb9ba7ed/_temp__2020-12-14_21-01-39/export/xar/experiments_and_runs.xar.exploded/Run95773/PhopshoAssay_P_Final_09032019_Top3.sky.zip into the system

14 Dec 2020 21:34:20,964 INFO : Starting import from PhopshoAssay_P_Final_09032019_Top3.sky.zip

14 Dec 2020 21:34:20,970 INFO : Starting to import Skyline document from PhopshoAssay_P_Final_09032019_Top3.sky.zip

14 Dec 2020 21:34:20,976 INFO : Expanding Sordaria_pro11_TiO2.blib

14 Dec 2020 21:34:22,800 INFO : Expanding PhopshoAssay_P_Final_09032019_Top3.skyd

14 Dec 2020 21:34:22,911 INFO : Expanding PhopshoAssay_P_Final_09032019_Top3.sky.view

14 Dec 2020 21:34:22,912 INFO : Expanding PhopshoAssay_P_Final_09032019_Top3.sky

14 Dec 2020 21:34:23,008 INFO : 1% Done

14 Dec 2020 21:34:23,513 INFO : Inserting SMAC_00109

14 Dec 2020 21:34:23,582 INFO : 2% Done

14 Dec 2020 21:34:24,043 INFO : 3% Done

14 Dec 2020 21:34:24,302 DEBUG: Total peptides inserted: 2

14 Dec 2020 21:34:24,334 INFO : 4% Done

14 Dec 2020 21:34:24,370 INFO : Inserting SMAC_00192

14 Dec 2020 21:34:24,378 INFO : 5% Done

14 Dec 2020 21:34:24,585 INFO : 6% Done

14 Dec 2020 21:34:24,771 INFO : 7% Done

14 Dec 2020 21:34:24,861 INFO : 8% Done

14 Dec 2020 21:34:24,999 DEBUG: Total peptides inserted: 4

14 Dec 2020 21:34:25,024 INFO : Inserting SMAC_00609

14 Dec 2020 21:34:25,032 INFO : 9% Done

14 Dec 2020 21:34:25,119 INFO : 11% Done

14 Dec 2020 21:34:25,212 DEBUG: Total peptides inserted: 2

14 Dec 2020 21:34:25,237 INFO : Inserting SMAC_04815

14 Dec 2020 21:34:25,244 INFO : 12% Done

14 Dec 2020 21:34:25,356 INFO : 14% Done

14 Dec 2020 21:34:25,462 INFO : 15% Done

14 Dec 2020 21:34:25,626 DEBUG: Total peptides inserted: 3

14 Dec 2020 21:34:25,652 INFO : Inserting SMAC_00680

14 Dec 2020 21:34:25,660 INFO : 16% Done

14 Dec 2020 21:34:25,760 INFO : 18% Done

14 Dec 2020 21:34:25,842 INFO : 19% Done

14 Dec 2020 21:34:25,952 INFO : 21% Done

14 Dec 2020 21:34:26,039 INFO : 22% Done

14 Dec 2020 21:34:26,130 INFO : 23% Done

14 Dec 2020 21:34:26,228 INFO : 25% Done

14 Dec 2020 21:34:26,357 DEBUG: Total peptides inserted: 7

14 Dec 2020 21:34:26,384 INFO : Inserting SMAC_00877

14 Dec 2020 21:34:26,488 DEBUG: Total peptides inserted: 1

14 Dec 2020 21:34:26,493 INFO : 26% Done

14 Dec 2020 21:34:26,514 INFO : Inserting SMAC_02471

14 Dec 2020 21:34:26,521 INFO : 27% Done

14 Dec 2020 21:34:26,617 INFO : 28% Done

14 Dec 2020 21:34:26,718 INFO : 30% Done

14 Dec 2020 21:34:26,814 INFO : 31% Done

14 Dec 2020 21:34:26,911 INFO : 33% Done

14 Dec 2020 21:34:26,997 INFO : 34% Done

14 Dec 2020 21:34:27,161 INFO : 35% Done

14 Dec 2020 21:34:27,282 INFO : 37% Done

14 Dec 2020 21:34:27,381 INFO : 38% Done

14 Dec 2020 21:34:27,464 INFO : 40% Done

14 Dec 2020 21:34:27,559 INFO : 41% Done

14 Dec 2020 21:34:27,684 DEBUG: Total peptides inserted: 11

14 Dec 2020 21:34:27,715 INFO : Inserting SMAC_01456

14 Dec 2020 21:34:27,722 INFO : 42% Done

14 Dec 2020 21:34:27,816 DEBUG: Total peptides inserted: 1

14 Dec 2020 21:34:27,842 INFO : Inserting SMAC_05230

14 Dec 2020 21:34:27,849 INFO : 44% Done

14 Dec 2020 21:34:27,949 INFO : 45% Done

14 Dec 2020 21:34:28,032 INFO : 47% Done

14 Dec 2020 21:34:28,100 INFO : 48% Done

14 Dec 2020 21:34:28,188 INFO : 50% Done

14 Dec 2020 21:34:28,264 DEBUG: Total peptides inserted: 5

14 Dec 2020 21:34:28,317 INFO : Inserting SMAC_03322

14 Dec 2020 21:34:28,323 INFO : 51% Done

14 Dec 2020 21:34:28,413 INFO : 52% Done

14 Dec 2020 21:34:28,479 DEBUG: Total peptides inserted: 2

14 Dec 2020 21:34:28,510 INFO : Inserting SMAC_08843

14 Dec 2020 21:34:28,516 INFO : 54% Done

14 Dec 2020 21:34:28,614 INFO : 55% Done

14 Dec 2020 21:34:28,712 INFO : 57% Done

14 Dec 2020 21:34:28,783 DEBUG: Total peptides inserted: 3

14 Dec 2020 21:34:28,815 INFO : Inserting SMAC_04490

14 Dec 2020 21:34:28,821 INFO : 58% Done

14 Dec 2020 21:34:28,914 INFO : 60% Done

14 Dec 2020 21:34:29,008 INFO : 61% Done

14 Dec 2020 21:34:29,090 DEBUG: Total peptides inserted: 3

14 Dec 2020 21:34:29,103 INFO : Inserting SMAC_04445

14 Dec 2020 21:34:29,109 INFO : 62% Done

14 Dec 2020 21:34:29,193 INFO : 64% Done

14 Dec 2020 21:34:29,328 DEBUG: Total peptides inserted: 2

14 Dec 2020 21:34:29,349 INFO : Inserting SMAC_04153

14 Dec 2020 21:34:29,357 INFO : 65% Done

14 Dec 2020 21:34:29,448 DEBUG: Total peptides inserted: 1

14 Dec 2020 21:34:29,452 INFO : 66% Done

14 Dec 2020 21:34:29,493 INFO : Inserting SMAC_03830

14 Dec 2020 21:34:29,499 INFO : 67% Done

14 Dec 2020 21:34:29,586 DEBUG: Total peptides inserted: 1

14 Dec 2020 21:34:29,606 INFO : Inserting SMAC_04024

14 Dec 2020 21:34:29,612 INFO : 68% Done

14 Dec 2020 21:34:29,703 INFO : 70% Done

14 Dec 2020 21:34:29,784 INFO : 71% Done

14 Dec 2020 21:34:29,915 DEBUG: Total peptides inserted: 3

14 Dec 2020 21:34:29,946 INFO : Inserting SMAC_02124

14 Dec 2020 21:34:29,963 INFO : 73% Done

14 Dec 2020 21:34:30,081 INFO : 74% Done

14 Dec 2020 21:34:30,202 INFO : 75% Done

14 Dec 2020 21:34:30,301 DEBUG: Total peptides inserted: 4

14 Dec 2020 21:34:30,366 INFO : Inserting SMAC_04666

14 Dec 2020 21:34:30,373 INFO : 77% Done

14 Dec 2020 21:34:30,475 INFO : 78% Done

14 Dec 2020 21:34:30,546 INFO : 80% Done

14 Dec 2020 21:34:30,731 INFO : 81% Done

14 Dec 2020 21:34:30,818 DEBUG: Total peptides inserted: 4

14 Dec 2020 21:34:30,852 INFO : Inserting SMAC_02232

14 Dec 2020 21:34:30,860 INFO : 82% Done

14 Dec 2020 21:34:30,946 INFO : 84% Done

14 Dec 2020 21:34:31,050 INFO : 85% Done

14 Dec 2020 21:34:31,159 DEBUG: Total peptides inserted: 3

14 Dec 2020 21:34:31,194 INFO : Inserting SMAC_02272

14 Dec 2020 21:34:31,203 INFO : 87% Done

14 Dec 2020 21:34:31,296 INFO : 88% Done

14 Dec 2020 21:34:31,378 INFO : 90% Done

14 Dec 2020 21:34:31,494 INFO : 91% Done

14 Dec 2020 21:34:31,580 INFO : 92% Done

14 Dec 2020 21:34:31,708 DEBUG: Total peptides inserted: 5

14 Dec 2020 21:34:31,738 INFO : Inserting SMAC_05356

14 Dec 2020 21:34:31,745 INFO : 94% Done

14 Dec 2020 21:34:31,831 INFO : 95% Done

14 Dec 2020 21:34:31,930 DEBUG: Total peptides inserted: 2

14 Dec 2020 21:34:31,964 INFO : Inserting SMAC_07069

14 Dec 2020 21:34:31,971 INFO : 97% Done

14 Dec 2020 21:34:32,089 INFO : 98% Done

14 Dec 2020 21:34:32,114 DEBUG: Total peptides inserted: 3

14 Dec 2020 21:34:32,114 INFO : Done parsing Skyline document.

14 Dec 2020 21:34:32,116 INFO : Creating and populating temp tables for Proportion values

14 Dec 2020 21:34:32,204 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

14 Dec 2020 21:34:32,347 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

14 Dec 2020 21:34:32,413 INFO : Cleaning up temp tables

14 Dec 2020 21:34:32,890 INFO : Completed import of Skyline document from PhopshoAssay_P_Final_09032019_Top3.sky.zip

14 Dec 2020 21:34:32,898 INFO : 100% Done

14 Dec 2020 21:34:32,907 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/ISAS%20Protein%20Dynamics%20-%20Stein%20et%20al.%20KIN3%202020_deb98bbd-20bf-1039-927b-3013bb9ba7ed/_temp__2020-12-14_21-01-39/export/xar/experiments_and_runs.xar.exploded/Run95773/PhopshoAssay_P_Final_09032019_Top3.sky.zip into the system

14 Dec 2020 21:34:32,907 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/ISAS%20Protein%20Dynamics%20-%20Stein%20et%20al.%20KIN3%202020_deb98bbd-20bf-1039-927b-3013bb9ba7ed/_temp__2020-12-14_21-01-39/export/xar/experiments_and_runs.xar.exploded/Run95773/PhopshoAssay_P_Final_09032019_Top3/PhopshoAssay_P_Final_09032019_Top3.skyd into the system

14 Dec 2020 21:34:32,909 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/ISAS%20Protein%20Dynamics%20-%20Stein%20et%20al.%20KIN3%202020_deb98bbd-20bf-1039-927b-3013bb9ba7ed/_temp__2020-12-14_21-01-39/export/xar/experiments_and_runs.xar.exploded/Run95773/PhopshoAssay_P_Final_09032019_Top3/PhopshoAssay_P_Final_09032019_Top3.skyd into the system

14 Dec 2020 21:34:32,909 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/ISAS%20Protein%20Dynamics%20-%20Stein%20et%20al.%20KIN3%202020_deb98bbd-20bf-1039-927b-3013bb9ba7ed/_temp__2020-12-14_21-01-39/export/xar/experiments_and_runs.xar.exploded/Run95772/PhopshoAssay_P-DS_19032019_Isoforms_Top3.sky.zip into the system

14 Dec 2020 21:34:32,913 INFO : Starting import from PhopshoAssay_P-DS_19032019_Isoforms_Top3.sky.zip

14 Dec 2020 21:34:32,918 INFO : Starting to import Skyline document from PhopshoAssay_P-DS_19032019_Isoforms_Top3.sky.zip

14 Dec 2020 21:34:32,931 INFO : Expanding Sordaria_pro11_TiO2.blib

14 Dec 2020 21:34:33,995 INFO : Expanding PhopshoAssay_P-DS_19032019_Isoforms_Top3.skyd

14 Dec 2020 21:34:34,177 INFO : Expanding PhopshoAssay_P-DS_19032019_Isoforms_Top3.sky.view

14 Dec 2020 21:34:34,178 INFO : Expanding PhopshoAssay_P-DS_19032019_Isoforms_Top3.sky

14 Dec 2020 21:34:34,513 INFO : Inserting SMAC_00109

14 Dec 2020 21:34:34,525 INFO : 2% Done

14 Dec 2020 21:34:34,676 INFO : 3% Done

14 Dec 2020 21:34:34,820 DEBUG: Total peptides inserted: 2

14 Dec 2020 21:34:34,823 INFO : Inserting SMAC_00192

14 Dec 2020 21:34:34,833 INFO : 5% Done

14 Dec 2020 21:34:34,985 INFO : 6% Done

14 Dec 2020 21:34:35,189 INFO : 8% Done

14 Dec 2020 21:34:35,381 INFO : 9% Done

14 Dec 2020 21:34:35,520 DEBUG: Total peptides inserted: 4

14 Dec 2020 21:34:35,523 INFO : Inserting SMAC_00609

14 Dec 2020 21:34:35,532 INFO : 11% Done

14 Dec 2020 21:34:35,677 INFO : 12% Done

14 Dec 2020 21:34:35,818 DEBUG: Total peptides inserted: 2

14 Dec 2020 21:34:35,821 INFO : Inserting SMAC_04815

14 Dec 2020 21:34:35,832 INFO : 14% Done

14 Dec 2020 21:34:35,984 INFO : 15% Done

14 Dec 2020 21:34:36,102 INFO : 17% Done

14 Dec 2020 21:34:36,235 DEBUG: Total peptides inserted: 3

14 Dec 2020 21:34:36,237 INFO : Inserting SMAC_00680

14 Dec 2020 21:34:36,242 INFO : 18% Done

14 Dec 2020 21:34:36,353 INFO : 20% Done

14 Dec 2020 21:34:36,488 INFO : 21% Done

14 Dec 2020 21:34:36,646 INFO : 22% Done

14 Dec 2020 21:34:36,804 INFO : 24% Done

14 Dec 2020 21:34:36,957 INFO : 25% Done

14 Dec 2020 21:34:37,246 DEBUG: Total peptides inserted: 7

14 Dec 2020 21:34:37,249 INFO : Inserting SMAC_00877

14 Dec 2020 21:34:37,259 INFO : 27% Done

14 Dec 2020 21:34:37,399 DEBUG: Total peptides inserted: 1

14 Dec 2020 21:34:37,401 INFO : Inserting SMAC_02471

14 Dec 2020 21:34:37,411 INFO : 28% Done

14 Dec 2020 21:34:37,560 INFO : 29% Done

14 Dec 2020 21:34:37,708 INFO : 31% Done

14 Dec 2020 21:34:37,856 INFO : 32% Done

14 Dec 2020 21:34:38,006 INFO : 33% Done

14 Dec 2020 21:34:38,153 INFO : 35% Done

14 Dec 2020 21:34:38,302 INFO : 36% Done

14 Dec 2020 21:34:38,453 INFO : 37% Done

14 Dec 2020 21:34:38,606 INFO : 39% Done

14 Dec 2020 21:34:38,792 INFO : 40% Done

14 Dec 2020 21:34:38,938 INFO : 42% Done

14 Dec 2020 21:34:39,194 DEBUG: Total peptides inserted: 11

14 Dec 2020 21:34:39,197 INFO : Inserting SMAC_01456

14 Dec 2020 21:34:39,209 INFO : 44% Done

14 Dec 2020 21:34:39,387 DEBUG: Total peptides inserted: 1

14 Dec 2020 21:34:39,390 INFO : Inserting SMAC_05230

14 Dec 2020 21:34:39,401 INFO : 45% Done

14 Dec 2020 21:34:39,611 INFO : 47% Done

14 Dec 2020 21:34:39,766 INFO : 48% Done

14 Dec 2020 21:34:39,924 INFO : 50% Done

14 Dec 2020 21:34:40,048 INFO : 51% Done

14 Dec 2020 21:34:40,194 DEBUG: Total peptides inserted: 5

14 Dec 2020 21:34:40,196 INFO : Inserting SMAC_03322

14 Dec 2020 21:34:40,202 INFO : 53% Done

14 Dec 2020 21:34:40,339 INFO : 54% Done

14 Dec 2020 21:34:40,483 DEBUG: Total peptides inserted: 2

14 Dec 2020 21:34:40,486 INFO : Inserting SMAC_08843

14 Dec 2020 21:34:40,496 INFO : 56% Done

14 Dec 2020 21:34:40,645 INFO : 57% Done

14 Dec 2020 21:34:40,793 INFO : 58% Done

14 Dec 2020 21:34:40,913 DEBUG: Total peptides inserted: 3

14 Dec 2020 21:34:40,916 INFO : Inserting SMAC_04490

14 Dec 2020 21:34:40,926 INFO : 60% Done

14 Dec 2020 21:34:41,089 INFO : 61% Done

14 Dec 2020 21:34:41,255 INFO : 62% Done

14 Dec 2020 21:34:41,423 DEBUG: Total peptides inserted: 3

14 Dec 2020 21:34:41,426 INFO : Inserting SMAC_04445

14 Dec 2020 21:34:41,436 INFO : 64% Done

14 Dec 2020 21:34:41,587 INFO : 65% Done

14 Dec 2020 21:34:41,760 DEBUG: Total peptides inserted: 2

14 Dec 2020 21:34:41,763 INFO : Inserting SMAC_04153

14 Dec 2020 21:34:41,773 INFO : 67% Done

14 Dec 2020 21:34:41,948 DEBUG: Total peptides inserted: 1

14 Dec 2020 21:34:41,950 INFO : Inserting SMAC_03830

14 Dec 2020 21:34:41,959 INFO : 68% Done

14 Dec 2020 21:34:42,097 DEBUG: Total peptides inserted: 1

14 Dec 2020 21:34:42,100 INFO : Inserting SMAC_04024

14 Dec 2020 21:34:42,109 INFO : 69% Done

14 Dec 2020 21:34:42,257 INFO : 71% Done

14 Dec 2020 21:34:42,431 INFO : 72% Done

14 Dec 2020 21:34:42,577 DEBUG: Total peptides inserted: 3

14 Dec 2020 21:34:42,580 INFO : Inserting SMAC_02124

14 Dec 2020 21:34:42,589 INFO : 74% Done

14 Dec 2020 21:34:42,837 INFO : 75% Done

14 Dec 2020 21:34:42,972 INFO : 76% Done

14 Dec 2020 21:34:43,109 DEBUG: Total peptides inserted: 4

14 Dec 2020 21:34:43,112 INFO : Inserting SMAC_04666

14 Dec 2020 21:34:43,122 INFO : 78% Done

14 Dec 2020 21:34:43,330 INFO : 79% Done

14 Dec 2020 21:34:43,489 INFO : 80% Done

14 Dec 2020 21:34:43,656 INFO : 81% Done

14 Dec 2020 21:34:43,794 DEBUG: Total peptides inserted: 4

14 Dec 2020 21:34:43,797 INFO : Inserting SMAC_02232

14 Dec 2020 21:34:43,807 INFO : 83% Done

14 Dec 2020 21:34:43,960 INFO : 84% Done

14 Dec 2020 21:34:44,132 INFO : 86% Done

14 Dec 2020 21:34:44,275 DEBUG: Total peptides inserted: 3

14 Dec 2020 21:34:44,278 INFO : Inserting SMAC_02272

14 Dec 2020 21:34:44,291 INFO : 87% Done

14 Dec 2020 21:34:44,458 INFO : 88% Done

14 Dec 2020 21:34:44,610 INFO : 90% Done

14 Dec 2020 21:34:44,766 INFO : 91% Done

14 Dec 2020 21:34:44,914 INFO : 92% Done

14 Dec 2020 21:34:45,068 DEBUG: Total peptides inserted: 5

14 Dec 2020 21:34:45,070 INFO : Inserting SMAC_05356

14 Dec 2020 21:34:45,081 INFO : 94% Done

14 Dec 2020 21:34:45,268 INFO : 95% Done

14 Dec 2020 21:34:45,418 DEBUG: Total peptides inserted: 2

14 Dec 2020 21:34:45,421 INFO : Inserting SMAC_07069

14 Dec 2020 21:34:45,435 INFO : 97% Done

14 Dec 2020 21:34:45,644 INFO : 98% Done

14 Dec 2020 21:34:45,692 DEBUG: Total peptides inserted: 3

14 Dec 2020 21:34:45,692 INFO : Done parsing Skyline document.

14 Dec 2020 21:34:45,694 INFO : Creating and populating temp tables for Proportion values

14 Dec 2020 21:34:45,748 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

14 Dec 2020 21:34:46,164 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

14 Dec 2020 21:34:46,342 INFO : Cleaning up temp tables

14 Dec 2020 21:34:46,365 INFO : Completed import of Skyline document from PhopshoAssay_P-DS_19032019_Isoforms_Top3.sky.zip

14 Dec 2020 21:34:46,372 INFO : 100% Done

14 Dec 2020 21:34:46,380 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/ISAS%20Protein%20Dynamics%20-%20Stein%20et%20al.%20KIN3%202020_deb98bbd-20bf-1039-927b-3013bb9ba7ed/_temp__2020-12-14_21-01-39/export/xar/experiments_and_runs.xar.exploded/Run95772/PhopshoAssay_P-DS_19032019_Isoforms_Top3.sky.zip into the system

14 Dec 2020 21:34:46,380 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/ISAS%20Protein%20Dynamics%20-%20Stein%20et%20al.%20KIN3%202020_deb98bbd-20bf-1039-927b-3013bb9ba7ed/_temp__2020-12-14_21-01-39/export/xar/experiments_and_runs.xar.exploded/Run95772/PhopshoAssay_P-DS_19032019_Isoforms_Top3/PhopshoAssay_P-DS_19032019_Isoforms_Top3.skyd into the system

14 Dec 2020 21:34:46,381 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/ISAS%20Protein%20Dynamics%20-%20Stein%20et%20al.%20KIN3%202020_deb98bbd-20bf-1039-927b-3013bb9ba7ed/_temp__2020-12-14_21-01-39/export/xar/experiments_and_runs.xar.exploded/Run95772/PhopshoAssay_P-DS_19032019_Isoforms_Top3/PhopshoAssay_P-DS_19032019_Isoforms_Top3.skyd into the system

14 Dec 2020 21:34:46,381 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/ISAS%20Protein%20Dynamics%20-%20Stein%20et%20al.%20KIN3%202020_deb98bbd-20bf-1039-927b-3013bb9ba7ed/_temp__2020-12-14_21-01-39/export/xar/experiments_and_runs.xar.exploded/Run95771/PhopshoAssay_noP_DS_13122018_Top3.sky.zip into the system

14 Dec 2020 21:34:46,385 INFO : Starting import from PhopshoAssay_noP_DS_13122018_Top3.sky.zip

14 Dec 2020 21:34:46,390 INFO : Starting to import Skyline document from PhopshoAssay_noP_DS_13122018_Top3.sky.zip

14 Dec 2020 21:34:46,404 INFO : Expanding Sordaria_pro11_TiO2.blib

14 Dec 2020 21:34:47,497 INFO : Expanding PhopshoAssay_noP_DS_13122018_Top3.skyd

14 Dec 2020 21:34:47,636 INFO : Expanding PhopshoAssay_noP_DS_13122018_Top3.sky.view

14 Dec 2020 21:34:47,637 INFO : Expanding PhopshoAssay_noP_DS_13122018_Top3.sky

14 Dec 2020 21:34:47,666 INFO : 1% Done

14 Dec 2020 21:34:48,013 INFO : Inserting SMAC_00109

14 Dec 2020 21:34:48,019 INFO : 2% Done

14 Dec 2020 21:34:48,139 INFO : 4% Done

14 Dec 2020 21:34:48,267 DEBUG: Total peptides inserted: 2

14 Dec 2020 21:34:48,269 INFO : Inserting SMAC_00192

14 Dec 2020 21:34:48,273 INFO : 5% Done

14 Dec 2020 21:34:48,387 INFO : 7% Done

14 Dec 2020 21:34:48,525 INFO : 8% Done

14 Dec 2020 21:34:48,666 DEBUG: Total peptides inserted: 3

14 Dec 2020 21:34:48,669 INFO : Inserting SMAC_00609

14 Dec 2020 21:34:48,679 INFO : 10% Done

14 Dec 2020 21:34:48,831 INFO : 11% Done

14 Dec 2020 21:34:48,971 DEBUG: Total peptides inserted: 2

14 Dec 2020 21:34:48,973 INFO : Inserting SMAC_04815

14 Dec 2020 21:34:48,983 INFO : 13% Done

14 Dec 2020 21:34:49,132 INFO : 14% Done

14 Dec 2020 21:34:49,283 INFO : 16% Done

14 Dec 2020 21:34:49,424 DEBUG: Total peptides inserted: 3

14 Dec 2020 21:34:49,427 INFO : Inserting SMAC_00680

14 Dec 2020 21:34:49,436 INFO : 17% Done

14 Dec 2020 21:34:49,580 INFO : 19% Done

14 Dec 2020 21:34:49,701 INFO : 20% Done

14 Dec 2020 21:34:49,850 INFO : 22% Done

14 Dec 2020 21:34:49,981 INFO : 23% Done

14 Dec 2020 21:34:50,090 INFO : 25% Done

14 Dec 2020 21:34:50,236 DEBUG: Total peptides inserted: 6

14 Dec 2020 21:34:50,238 INFO : Inserting SMAC_00877

14 Dec 2020 21:34:50,340 INFO : 27% Done

14 Dec 2020 21:34:50,449 INFO : 28% Done

14 Dec 2020 21:34:50,600 INFO : 30% Done

14 Dec 2020 21:34:50,759 INFO : 31% Done

14 Dec 2020 21:34:50,897 DEBUG: Total peptides inserted: 5

14 Dec 2020 21:34:50,900 INFO : Inserting SMAC_02471

14 Dec 2020 21:34:50,909 INFO : 33% Done

14 Dec 2020 21:34:51,071 INFO : 34% Done

14 Dec 2020 21:34:51,221 INFO : 36% Done

14 Dec 2020 21:34:51,399 INFO : 37% Done

14 Dec 2020 21:34:51,549 INFO : 39% Done

14 Dec 2020 21:34:51,709 INFO : 40% Done

14 Dec 2020 21:34:51,864 INFO : 42% Done

14 Dec 2020 21:34:51,991 INFO : 43% Done

14 Dec 2020 21:34:52,102 INFO : 45% Done

14 Dec 2020 21:34:52,271 INFO : 46% Done

14 Dec 2020 21:34:52,412 INFO : 48% Done

14 Dec 2020 21:34:52,562 INFO : 49% Done

14 Dec 2020 21:34:52,694 DEBUG: Total peptides inserted: 12

14 Dec 2020 21:34:52,697 INFO : Inserting SMAC_01456

14 Dec 2020 21:34:52,707 INFO : 51% Done

14 Dec 2020 21:34:52,851 DEBUG: Total peptides inserted: 1

14 Dec 2020 21:34:52,854 INFO : Inserting SMAC_03322

14 Dec 2020 21:34:52,864 INFO : 53% Done

14 Dec 2020 21:34:53,004 DEBUG: Total peptides inserted: 1

14 Dec 2020 21:34:53,007 INFO : Inserting SMAC_05230

14 Dec 2020 21:34:53,016 INFO : 54% Done

14 Dec 2020 21:34:53,164 INFO : 56% Done

14 Dec 2020 21:34:53,313 INFO : 57% Done

14 Dec 2020 21:34:53,459 INFO : 59% Done

14 Dec 2020 21:34:53,597 DEBUG: Total peptides inserted: 4

14 Dec 2020 21:34:53,600 INFO : Inserting SMAC_08843

14 Dec 2020 21:34:53,609 INFO : 60% Done

14 Dec 2020 21:34:53,768 INFO : 62% Done

14 Dec 2020 21:34:53,929 INFO : 63% Done

14 Dec 2020 21:34:54,069 DEBUG: Total peptides inserted: 3

14 Dec 2020 21:34:54,072 INFO : Inserting SMAC_04490

14 Dec 2020 21:34:54,082 INFO : 65% Done

14 Dec 2020 21:34:54,250 INFO : 66% Done

14 Dec 2020 21:34:54,502 INFO : 68% Done

14 Dec 2020 21:34:54,655 INFO : 69% Done

14 Dec 2020 21:34:54,804 INFO : 71% Done

14 Dec 2020 21:34:54,943 DEBUG: Total peptides inserted: 5

14 Dec 2020 21:34:54,945 INFO : Inserting SMAC_04445

14 Dec 2020 21:34:54,955 INFO : 72% Done

14 Dec 2020 21:34:55,157 INFO : 74% Done

14 Dec 2020 21:34:55,453 DEBUG: Total peptides inserted: 3

14 Dec 2020 21:34:55,455 INFO : Inserting SMAC_03830

14 Dec 2020 21:34:55,465 INFO : 76% Done

14 Dec 2020 21:34:55,605 DEBUG: Total peptides inserted: 1

14 Dec 2020 21:34:55,608 INFO : Inserting SMAC_04024

14 Dec 2020 21:34:55,616 INFO : 78% Done

14 Dec 2020 21:34:55,770 INFO : 79% Done

14 Dec 2020 21:34:55,997 DEBUG: Total peptides inserted: 2

14 Dec 2020 21:34:56,000 INFO : Inserting SMAC_04666

14 Dec 2020 21:34:56,010 INFO : 81% Done

14 Dec 2020 21:34:56,162 INFO : 83% Done

14 Dec 2020 21:34:56,311 INFO : 84% Done

14 Dec 2020 21:34:56,451 DEBUG: Total peptides inserted: 3

14 Dec 2020 21:34:56,454 INFO : Inserting SMAC_02232

14 Dec 2020 21:34:56,464 INFO : 86% Done

14 Dec 2020 21:34:56,611 INFO : 87% Done

14 Dec 2020 21:34:56,758 INFO : 89% Done

14 Dec 2020 21:34:56,896 DEBUG: Total peptides inserted: 3

14 Dec 2020 21:34:56,899 INFO : Inserting SMAC_02272

14 Dec 2020 21:34:56,909 INFO : 90% Done

14 Dec 2020 21:34:57,059 INFO : 92% Done

14 Dec 2020 21:34:57,238 INFO : 94% Done

14 Dec 2020 21:34:57,390 INFO : 95% Done

14 Dec 2020 21:34:57,529 DEBUG: Total peptides inserted: 4

14 Dec 2020 21:34:57,532 INFO : Inserting SMAC_05356

14 Dec 2020 21:34:57,542 INFO : 97% Done

14 Dec 2020 21:34:57,709 INFO : 98% Done

14 Dec 2020 21:34:57,856 DEBUG: Total peptides inserted: 2

14 Dec 2020 21:34:57,856 INFO : Done parsing Skyline document.

14 Dec 2020 21:34:57,858 INFO : Creating and populating temp tables for Proportion values

14 Dec 2020 21:34:57,909 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

14 Dec 2020 21:34:58,220 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

14 Dec 2020 21:34:58,376 INFO : Cleaning up temp tables

14 Dec 2020 21:34:58,732 INFO : Completed import of Skyline document from PhopshoAssay_noP_DS_13122018_Top3.sky.zip

14 Dec 2020 21:34:58,739 INFO : 100% Done

14 Dec 2020 21:34:58,746 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/ISAS%20Protein%20Dynamics%20-%20Stein%20et%20al.%20KIN3%202020_deb98bbd-20bf-1039-927b-3013bb9ba7ed/_temp__2020-12-14_21-01-39/export/xar/experiments_and_runs.xar.exploded/Run95771/PhopshoAssay_noP_DS_13122018_Top3.sky.zip into the system

14 Dec 2020 21:34:58,746 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/ISAS%20Protein%20Dynamics%20-%20Stein%20et%20al.%20KIN3%202020_deb98bbd-20bf-1039-927b-3013bb9ba7ed/_temp__2020-12-14_21-01-39/export/xar/experiments_and_runs.xar.exploded/Run95771/PhopshoAssay_noP_DS_13122018_Top3/PhopshoAssay_noP_DS_13122018_Top3.skyd into the system

14 Dec 2020 21:34:58,748 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/ISAS%20Protein%20Dynamics%20-%20Stein%20et%20al.%20KIN3%202020_deb98bbd-20bf-1039-927b-3013bb9ba7ed/_temp__2020-12-14_21-01-39/export/xar/experiments_and_runs.xar.exploded/Run95771/PhopshoAssay_noP_DS_13122018_Top3/PhopshoAssay_noP_DS_13122018_Top3.skyd into the system

14 Dec 2020 21:34:58,748 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/ISAS%20Protein%20Dynamics%20-%20Stein%20et%20al.%20KIN3%202020_deb98bbd-20bf-1039-927b-3013bb9ba7ed/_temp__2020-12-14_21-01-39/export/xar/experiments_and_runs.xar.exploded/Run95770/PhopshoAssay_noP_13032019_refined_Top3.sky.zip into the system

14 Dec 2020 21:34:58,751 INFO : Starting import from PhopshoAssay_noP_13032019_refined_Top3.sky.zip

14 Dec 2020 21:34:58,759 INFO : Starting to import Skyline document from PhopshoAssay_noP_13032019_refined_Top3.sky.zip

14 Dec 2020 21:34:58,764 INFO : Expanding Sordaria_pro11_TiO2.blib

14 Dec 2020 21:34:59,926 INFO : Expanding PhopshoAssay_noP_13032019_refined_Top3.skyd

14 Dec 2020 21:34:59,973 INFO : Expanding PhopshoAssay_noP_13032019_refined_Top3.sky.view

14 Dec 2020 21:34:59,973 INFO : Expanding PhopshoAssay_noP_13032019_refined_Top3.sky

14 Dec 2020 21:34:59,987 INFO : 1% Done

14 Dec 2020 21:35:00,154 INFO : Inserting SMAC_00109

14 Dec 2020 21:35:00,159 INFO : 4% Done

14 Dec 2020 21:35:00,226 INFO : 6% Done

14 Dec 2020 21:35:00,272 DEBUG: Total peptides inserted: 2

14 Dec 2020 21:35:00,274 INFO : Inserting SMAC_00192

14 Dec 2020 21:35:00,278 INFO : 9% Done

14 Dec 2020 21:35:00,326 INFO : 11% Done

14 Dec 2020 21:35:00,370 DEBUG: Total peptides inserted: 2

14 Dec 2020 21:35:00,372 INFO : Inserting SMAC_00609

14 Dec 2020 21:35:00,376 INFO : 14% Done

14 Dec 2020 21:35:00,425 DEBUG: Total peptides inserted: 1

14 Dec 2020 21:35:00,427 INFO : Inserting SMAC_04815

14 Dec 2020 21:35:00,431 INFO : 16% Done

14 Dec 2020 21:35:00,549 INFO : 18% Done

14 Dec 2020 21:35:00,677 INFO : 21% Done

14 Dec 2020 21:35:00,803 DEBUG: Total peptides inserted: 3

14 Dec 2020 21:35:00,807 INFO : Inserting SMAC_00680

14 Dec 2020 21:35:00,814 INFO : 23% Done

14 Dec 2020 21:35:00,942 INFO : 25% Done

14 Dec 2020 21:35:01,102 INFO : 27% Done

14 Dec 2020 21:35:01,218 DEBUG: Total peptides inserted: 3

14 Dec 2020 21:35:01,222 INFO : Inserting SMAC_00877

14 Dec 2020 21:35:01,230 INFO : 30% Done

14 Dec 2020 21:35:01,342 DEBUG: Total peptides inserted: 1

14 Dec 2020 21:35:01,346 INFO : Inserting SMAC_02471

14 Dec 2020 21:35:01,353 INFO : 33% Done

14 Dec 2020 21:35:01,466 INFO : 35% Done

14 Dec 2020 21:35:01,582 INFO : 37% Done

14 Dec 2020 21:35:01,696 INFO : 40% Done

14 Dec 2020 21:35:01,812 INFO : 42% Done

14 Dec 2020 21:35:01,933 DEBUG: Total peptides inserted: 5

14 Dec 2020 21:35:01,937 INFO : Inserting SMAC_01456

14 Dec 2020 21:35:01,944 INFO : 45% Done

14 Dec 2020 21:35:02,059 DEBUG: Total peptides inserted: 1

14 Dec 2020 21:35:02,064 INFO : Inserting SMAC_05230

14 Dec 2020 21:35:02,070 INFO : 47% Done

14 Dec 2020 21:35:02,193 INFO : 50% Done

14 Dec 2020 21:35:02,321 INFO : 52% Done

14 Dec 2020 21:35:02,437 DEBUG: Total peptides inserted: 3

14 Dec 2020 21:35:02,442 INFO : Inserting SMAC_03322

14 Dec 2020 21:35:02,451 INFO : 54% Done

14 Dec 2020 21:35:02,580 DEBUG: Total peptides inserted: 1

14 Dec 2020 21:35:02,585 INFO : 55% Done

14 Dec 2020 21:35:02,589 INFO : Inserting SMAC_08843

14 Dec 2020 21:35:02,596 INFO : 57% Done

14 Dec 2020 21:35:02,720 INFO : 59% Done

14 Dec 2020 21:35:02,842 INFO : 62% Done

14 Dec 2020 21:35:02,973 DEBUG: Total peptides inserted: 3

14 Dec 2020 21:35:02,977 INFO : Inserting SMAC_04490

14 Dec 2020 21:35:02,985 INFO : 64% Done

14 Dec 2020 21:35:03,115 DEBUG: Total peptides inserted: 1

14 Dec 2020 21:35:03,119 INFO : 65% Done

14 Dec 2020 21:35:03,123 INFO : Inserting SMAC_04445

14 Dec 2020 21:35:03,129 INFO : 67% Done

14 Dec 2020 21:35:03,266 INFO : 69% Done

14 Dec 2020 21:35:03,386 INFO : 72% Done

14 Dec 2020 21:35:03,498 DEBUG: Total peptides inserted: 3

14 Dec 2020 21:35:03,502 INFO : Inserting SMAC_03830

14 Dec 2020 21:35:03,509 INFO : 74% Done

14 Dec 2020 21:35:03,681 DEBUG: Total peptides inserted: 1

14 Dec 2020 21:35:03,685 INFO : Inserting SMAC_04666

14 Dec 2020 21:35:03,693 INFO : 76% Done

14 Dec 2020 21:35:03,822 INFO : 79% Done

14 Dec 2020 21:35:03,941 INFO : 81% Done

14 Dec 2020 21:35:04,048 DEBUG: Total peptides inserted: 3

14 Dec 2020 21:35:04,052 INFO : Inserting SMAC_02232

14 Dec 2020 21:35:04,058 INFO : 83% Done

14 Dec 2020 21:35:04,169 INFO : 86% Done

14 Dec 2020 21:35:04,277 DEBUG: Total peptides inserted: 2

14 Dec 2020 21:35:04,281 INFO : Inserting SMAC_02272

14 Dec 2020 21:35:04,287 INFO : 88% Done

14 Dec 2020 21:35:04,415 INFO : 91% Done

14 Dec 2020 21:35:04,528 INFO : 93% Done

14 Dec 2020 21:35:04,643 INFO : 96% Done

14 Dec 2020 21:35:04,751 DEBUG: Total peptides inserted: 4

14 Dec 2020 21:35:04,755 INFO : Inserting SMAC_05356

14 Dec 2020 21:35:04,913 INFO : 98% Done

14 Dec 2020 21:35:05,021 DEBUG: Total peptides inserted: 1

14 Dec 2020 21:35:05,022 INFO : Done parsing Skyline document.

14 Dec 2020 21:35:05,024 INFO : Creating and populating temp tables for Proportion values

14 Dec 2020 21:35:05,160 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

14 Dec 2020 21:35:05,356 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

14 Dec 2020 21:35:05,426 INFO : Cleaning up temp tables

14 Dec 2020 21:35:05,763 INFO : Completed import of Skyline document from PhopshoAssay_noP_13032019_refined_Top3.sky.zip

14 Dec 2020 21:35:05,769 INFO : 100% Done

14 Dec 2020 21:35:05,777 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/ISAS%20Protein%20Dynamics%20-%20Stein%20et%20al.%20KIN3%202020_deb98bbd-20bf-1039-927b-3013bb9ba7ed/_temp__2020-12-14_21-01-39/export/xar/experiments_and_runs.xar.exploded/Run95770/PhopshoAssay_noP_13032019_refined_Top3.sky.zip into the system

14 Dec 2020 21:35:05,778 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/ISAS%20Protein%20Dynamics%20-%20Stein%20et%20al.%20KIN3%202020_deb98bbd-20bf-1039-927b-3013bb9ba7ed/_temp__2020-12-14_21-01-39/export/xar/experiments_and_runs.xar.exploded/Run95770/PhopshoAssay_noP_13032019_refined_Top3/PhopshoAssay_noP_13032019_refined_Top3.skyd into the system

14 Dec 2020 21:35:05,778 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/ISAS%20Protein%20Dynamics%20-%20Stein%20et%20al.%20KIN3%202020_deb98bbd-20bf-1039-927b-3013bb9ba7ed/_temp__2020-12-14_21-01-39/export/xar/experiments_and_runs.xar.exploded/Run95770/PhopshoAssay_noP_13032019_refined_Top3/PhopshoAssay_noP_13032019_refined_Top3.skyd into the system

14 Dec 2020 21:35:05,819 INFO : Done importing xar

14 Dec 2020 21:35:05,823 INFO : Loading pages and webpart properties

14 Dec 2020 21:35:05,959 INFO : Done importing pages and webpart properties

14 Dec 2020 21:35:05,959 INFO :

14 Dec 2020 21:35:05,959 INFO : Experiment import completed successfully.

14 Dec 2020 21:35:05,959 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'

14 Dec 2020 21:35:56,168 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'

14 Dec 2020 21:35:56,168 INFO :

14 Dec 2020 21:35:56,168 INFO : Finishing up experiment copy.

14 Dec 2020 21:35:56,171 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.

14 Dec 2020 21:35:56,174 INFO : Assigning a ProteomeXchange ID.

14 Dec 2020 21:35:56,630 INFO : Updating access URL to point to the new copy of the data.

14 Dec 2020 21:35:56,701 INFO : Setting the 'copied' timestamp and journalExperimentId on the JournalExperiment table.

14 Dec 2020 21:35:56,753 INFO : Removing copy permissions given to journal.

14 Dec 2020 21:35:56,845 INFO : Adding read permissions to all users that are folder admins in the source container.

14 Dec 2020 21:35:56,872 INFO : Setting the TargetedMS folder type to 'Experimental Data'

14 Dec 2020 21:35:56,915 INFO : Updating the 'Raw Data' tab configuration

14 Dec 2020 21:35:56,923 INFO : Updating dataFileUrls for run PhopshoAssay_noP_13032019_refined_Top3.sky.zip; targetedms run ID 98593

14 Dec 2020 21:35:56,924 INFO : Updating dataFileUrl...

14 Dec 2020 21:35:56,924 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/ISAS%20Protein%20Dynamics%20-%20Stein%20et%20al.%20KIN3%202020_deb98bbd-20bf-1039-927b-3013bb9ba7ed/_temp__2020-12-14_21-01-39/export/xar/experiments_and_runs.xar.exploded/Run95770/PhopshoAssay_noP_13032019_refined_Top3/PhopshoAssay_noP_13032019_refined_Top3.skyd

14 Dec 2020 21:35:56,924 INFO : to: file:///data/labkey/files/Panorama%20Public/2020/ISAS%20Protein%20Dynamics%20-%20Stein%20et%20al.%20KIN3%202020/@files/PhopshoAssay_noP_13032019_refined_Top3/PhopshoAssay_noP_13032019_refined_Top3.skyd

14 Dec 2020 21:35:56,930 INFO : Updating dataFileUrl...

14 Dec 2020 21:35:56,930 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/ISAS%20Protein%20Dynamics%20-%20Stein%20et%20al.%20KIN3%202020_deb98bbd-20bf-1039-927b-3013bb9ba7ed/_temp__2020-12-14_21-01-39/export/xar/experiments_and_runs.xar.exploded/Run95770/PhopshoAssay_noP_13032019_refined_Top3.sky.zip

14 Dec 2020 21:35:56,931 INFO : to: file:///data/labkey/files/Panorama%20Public/2020/ISAS%20Protein%20Dynamics%20-%20Stein%20et%20al.%20KIN3%202020/@files/PhopshoAssay_noP_13032019_refined_Top3.sky.zip

14 Dec 2020 21:35:56,955 INFO : Updating dataFileUrls for run PhopshoAssay_noP_DS_13122018_Top3.sky.zip; targetedms run ID 98592

14 Dec 2020 21:35:56,956 INFO : Updating dataFileUrl...

14 Dec 2020 21:35:56,956 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/ISAS%20Protein%20Dynamics%20-%20Stein%20et%20al.%20KIN3%202020_deb98bbd-20bf-1039-927b-3013bb9ba7ed/_temp__2020-12-14_21-01-39/export/xar/experiments_and_runs.xar.exploded/Run95771/PhopshoAssay_noP_DS_13122018_Top3/PhopshoAssay_noP_DS_13122018_Top3.skyd

14 Dec 2020 21:35:56,956 INFO : to: file:///data/labkey/files/Panorama%20Public/2020/ISAS%20Protein%20Dynamics%20-%20Stein%20et%20al.%20KIN3%202020/@files/PhopshoAssay_noP_DS_13122018_Top3/PhopshoAssay_noP_DS_13122018_Top3.skyd

14 Dec 2020 21:35:56,962 INFO : Updating dataFileUrl...

14 Dec 2020 21:35:56,962 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/ISAS%20Protein%20Dynamics%20-%20Stein%20et%20al.%20KIN3%202020_deb98bbd-20bf-1039-927b-3013bb9ba7ed/_temp__2020-12-14_21-01-39/export/xar/experiments_and_runs.xar.exploded/Run95771/PhopshoAssay_noP_DS_13122018_Top3.sky.zip

14 Dec 2020 21:35:56,962 INFO : to: file:///data/labkey/files/Panorama%20Public/2020/ISAS%20Protein%20Dynamics%20-%20Stein%20et%20al.%20KIN3%202020/@files/PhopshoAssay_noP_DS_13122018_Top3.sky.zip

14 Dec 2020 21:35:56,972 INFO : Updating dataFileUrls for run PhopshoAssay_P-DS_19032019_Isoforms_Top3.sky.zip; targetedms run ID 98591

14 Dec 2020 21:35:56,973 INFO : Updating dataFileUrl...

14 Dec 2020 21:35:56,973 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/ISAS%20Protein%20Dynamics%20-%20Stein%20et%20al.%20KIN3%202020_deb98bbd-20bf-1039-927b-3013bb9ba7ed/_temp__2020-12-14_21-01-39/export/xar/experiments_and_runs.xar.exploded/Run95772/PhopshoAssay_P-DS_19032019_Isoforms_Top3/PhopshoAssay_P-DS_19032019_Isoforms_Top3.skyd

14 Dec 2020 21:35:56,973 INFO : to: file:///data/labkey/files/Panorama%20Public/2020/ISAS%20Protein%20Dynamics%20-%20Stein%20et%20al.%20KIN3%202020/@files/PhopshoAssay_P-DS_19032019_Isoforms_Top3/PhopshoAssay_P-DS_19032019_Isoforms_Top3.skyd

14 Dec 2020 21:35:56,978 INFO : Updating dataFileUrl...

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14 Dec 2020 21:35:56,979 INFO : to: file:///data/labkey/files/Panorama%20Public/2020/ISAS%20Protein%20Dynamics%20-%20Stein%20et%20al.%20KIN3%202020/@files/PhopshoAssay_P-DS_19032019_Isoforms_Top3.sky.zip

14 Dec 2020 21:35:56,988 INFO : Updating dataFileUrls for run PhopshoAssay_P_Final_09032019_Top3.sky.zip; targetedms run ID 98590

14 Dec 2020 21:35:56,989 INFO : Updating dataFileUrl...

14 Dec 2020 21:35:56,989 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/ISAS%20Protein%20Dynamics%20-%20Stein%20et%20al.%20KIN3%202020_deb98bbd-20bf-1039-927b-3013bb9ba7ed/_temp__2020-12-14_21-01-39/export/xar/experiments_and_runs.xar.exploded/Run95773/PhopshoAssay_P_Final_09032019_Top3/PhopshoAssay_P_Final_09032019_Top3.skyd

14 Dec 2020 21:35:56,989 INFO : to: file:///data/labkey/files/Panorama%20Public/2020/ISAS%20Protein%20Dynamics%20-%20Stein%20et%20al.%20KIN3%202020/@files/PhopshoAssay_P_Final_09032019_Top3/PhopshoAssay_P_Final_09032019_Top3.skyd

14 Dec 2020 21:35:56,994 INFO : Updating dataFileUrl...

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14 Dec 2020 21:35:56,995 INFO : to: file:///data/labkey/files/Panorama%20Public/2020/ISAS%20Protein%20Dynamics%20-%20Stein%20et%20al.%20KIN3%202020/@files/PhopshoAssay_P_Final_09032019_Top3.sky.zip

14 Dec 2020 21:35:57,001 INFO : Creating a reviewer account.

14 Dec 2020 21:35:57,905 INFO : Created reviewer with email: User panorama+blank@proteinms.net

14 Dec 2020 21:35:57,924 INFO : Hiding the Data Pipeline tab.

14 Dec 2020 21:35:59,296 INFO : Emailing submitter.

14 Dec 2020 21:36:00,006 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'