13 Sep 2020 10:51:42,800 INFO : Copying experiment "SARS-CoV-2_PRM_SRM_targeted_acquisitions" from folder /Group Fleury/Fleury_SARS-CoV-2 to /Panorama Public/2020/Group Fleury - Fleury_SARS-CoV-2

13 Sep 2020 10:51:42,800 INFO : =======================================

13 Sep 2020 10:56:57,645 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'

13 Sep 2020 10:56:57,645 INFO : 

13 Sep 2020 10:56:57,645 INFO : Exporting experiment.

13 Sep 2020 10:58:49,424 INFO : 

13 Sep 2020 10:58:49,424 INFO : Experiment export completed successfully.

13 Sep 2020 10:58:49,425 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'

13 Sep 2020 11:00:31,168 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'

13 Sep 2020 11:00:31,168 INFO : 

13 Sep 2020 11:00:31,168 INFO : Importing experiment.

13 Sep 2020 11:00:31,192 INFO : Loading folder properties (folder type, settings and active modules)

13 Sep 2020 11:00:31,433 INFO : Done importing folder properties (folder type, settings and active modules)

13 Sep 2020 11:00:31,440 INFO : Loading etl definitions

13 Sep 2020 11:00:31,447 INFO : Loading wikis

13 Sep 2020 11:00:31,591 INFO : 2 wikis imported

13 Sep 2020 11:00:31,591 INFO : Done importing wikis

13 Sep 2020 11:00:31,592 INFO : Starting to copy files

13 Sep 2020 11:01:03,169 INFO : Copied 12 files

13 Sep 2020 11:01:03,169 INFO : Ensuring exp.data rows exist for imported files

13 Sep 2020 11:01:06,746 INFO : Loading xar

13 Sep 2020 11:01:06,815 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-7595:PRM_60min'

13 Sep 2020 11:01:06,815 DEBUG: Experiment/Run group import complete

13 Sep 2020 11:01:06,816 INFO : Done importing xar

13 Sep 2020 11:01:06,820 INFO : Loading pages and webpart properties

13 Sep 2020 11:01:06,944 INFO : Done importing pages and webpart properties

13 Sep 2020 11:01:06,949 INFO : Loading subfolders and container tabs

13 Sep 2020 11:01:07,152 INFO : New container created with inherited permissions for PRM

13 Sep 2020 11:01:07,152 INFO : Loading folder archive for PRM

13 Sep 2020 11:01:07,156 INFO : Loading folder properties (folder type, settings and active modules)

13 Sep 2020 11:01:07,263 INFO : Done importing folder properties (folder type, settings and active modules)

13 Sep 2020 11:01:07,268 INFO : Loading etl definitions

13 Sep 2020 11:01:07,272 INFO : Loading wikis

13 Sep 2020 11:01:07,285 INFO : 1 wiki imported

13 Sep 2020 11:01:07,285 INFO : Done importing wikis

13 Sep 2020 11:01:07,318 INFO : Starting to copy files

13 Sep 2020 11:01:26,392 INFO : Copied 76 files

13 Sep 2020 11:01:26,392 INFO : Ensuring exp.data rows exist for imported files

13 Sep 2020 11:01:28,410 INFO : Loading xar

13 Sep 2020 11:01:28,528 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-7596:TargetedMS.ImportSkyZip'

13 Sep 2020 11:01:28,535 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-7596:TargetedMS.ImportSkyZip.Core'

13 Sep 2020 11:01:28,542 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-7596:TargetedMS.ImportSkyZip.Output'

13 Sep 2020 11:01:28,542 DEBUG: Protocol import complete

13 Sep 2020 11:01:28,588 DEBUG: Protocol action set import complete

13 Sep 2020 11:01:28,609 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7596:TargetedMS.ImportSkyZip'

13 Sep 2020 11:01:28,706 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-7596:d3e095de-d68d-1038-9455-3013bb9b8170'

13 Sep 2020 11:01:28,718 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-7596:d3e095c6-d68d-1038-9455-3013bb9b8170'

13 Sep 2020 11:01:28,718 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7596:TargetedMS.ImportSkyZip.Core'

13 Sep 2020 11:01:28,731 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7596:TargetedMS.ImportSkyZip.Output'

13 Sep 2020 11:01:28,733 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-7596:d3e095fe-d68d-1038-9455-3013bb9b8170'

13 Sep 2020 11:01:28,745 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7596:TargetedMS.ImportSkyZip'

13 Sep 2020 11:01:28,758 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-7596:716205c6-d68d-1038-9455-3013bb9b8170'

13 Sep 2020 11:01:28,770 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-7596:716205a3-d68d-1038-9455-3013bb9b8170'

13 Sep 2020 11:01:28,770 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7596:TargetedMS.ImportSkyZip.Core'

13 Sep 2020 11:01:28,777 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7596:TargetedMS.ImportSkyZip.Output'

13 Sep 2020 11:01:28,778 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-7596:71620602-d68d-1038-9455-3013bb9b8170'

13 Sep 2020 11:01:28,782 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/PRM/xar/experiments_and_runs.xar.exploded/Run91884/PRM_60min_2020-09-11_15-51-41/PRM_60min.skyd into the system

13 Sep 2020 11:01:28,784 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/PRM/xar/experiments_and_runs.xar.exploded/Run91884/PRM_60min_2020-09-11_15-51-41/PRM_60min.skyd into the system

13 Sep 2020 11:01:28,784 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/PRM/xar/experiments_and_runs.xar.exploded/Run91884/PRM_60min_2020-09-11_15-51-41.sky.zip into the system

13 Sep 2020 11:01:28,788 INFO : Starting import from PRM_60min_2020-09-11_15-51-41.sky.zip

13 Sep 2020 11:01:28,798 INFO : Starting to import Skyline document from PRM_60min_2020-09-11_15-51-41.sky.zip

13 Sep 2020 11:01:28,799 INFO : Expanding LIB_SARS_CoV_2.blib

13 Sep 2020 11:01:28,804 INFO : Expanding PRM_60min.skyd

13 Sep 2020 11:01:28,818 INFO : Expanding PRM_60min.sky.view

13 Sep 2020 11:01:28,819 INFO : Expanding PRM_60min.sky

13 Sep 2020 11:01:28,828 WARN : The version of this Skyline document is 20.14. This is newer than the highest supported version 4.1

13 Sep 2020 11:01:28,837 INFO : 2% Done

13 Sep 2020 11:01:29,012 INFO : Inserting sp|P0DTC3|AP3A_SARS2

13 Sep 2020 11:01:29,093 INFO : 5% Done

13 Sep 2020 11:01:29,294 DEBUG: Total peptides inserted: 1

13 Sep 2020 11:01:29,365 INFO : Inserting sp|P0DTC9|NCAP_SARS2

13 Sep 2020 11:01:29,377 INFO : 10% Done

13 Sep 2020 11:01:29,512 INFO : 19% Done

13 Sep 2020 11:01:29,705 INFO : 26% Done

13 Sep 2020 11:01:29,895 INFO : 30% Done

13 Sep 2020 11:01:29,978 INFO : 38% Done

13 Sep 2020 11:01:30,140 INFO : 42% Done

13 Sep 2020 11:01:30,237 INFO : 46% Done

13 Sep 2020 11:01:30,381 INFO : 50% Done

13 Sep 2020 11:01:30,461 INFO : 54% Done

13 Sep 2020 11:01:30,609 DEBUG: Total peptides inserted: 9

13 Sep 2020 11:01:30,704 INFO : Inserting sp|P0DTC2|SPIKE_SARS2

13 Sep 2020 11:01:30,712 INFO : 58% Done

13 Sep 2020 11:01:30,795 INFO : 62% Done

13 Sep 2020 11:01:30,932 INFO : 66% Done

13 Sep 2020 11:01:31,028 INFO : 70% Done

13 Sep 2020 11:01:31,129 INFO : 74% Done

13 Sep 2020 11:01:31,222 DEBUG: Total peptides inserted: 5

13 Sep 2020 11:01:31,280 INFO : Inserting sp|P0DTC5|VME1_SARS2

13 Sep 2020 11:01:31,288 INFO : 77% Done

13 Sep 2020 11:01:31,358 INFO : 80% Done

13 Sep 2020 11:01:31,452 DEBUG: Total peptides inserted: 2

13 Sep 2020 11:01:31,452 INFO : Done parsing Skyline document.

13 Sep 2020 11:01:31,459 INFO : No group comparisons found.

13 Sep 2020 11:01:31,459 INFO : Calculating calibration curves

13 Sep 2020 11:01:31,461 DEBUG: Calculating calibration curve for sp|P0DTC5|VME1_SARS2, 1 of 4

13 Sep 2020 11:01:31,519 INFO : 85% Done

13 Sep 2020 11:01:31,519 DEBUG: Calculating calibration curve for sp|P0DTC2|SPIKE_SARS2, 2 of 4

13 Sep 2020 11:01:31,674 INFO : 89% Done

13 Sep 2020 11:01:31,674 DEBUG: Calculating calibration curve for sp|P0DTC9|NCAP_SARS2, 3 of 4

13 Sep 2020 11:01:32,090 INFO : 94% Done

13 Sep 2020 11:01:32,090 DEBUG: Calculating calibration curve for sp|P0DTC3|AP3A_SARS2, 4 of 4

13 Sep 2020 11:01:32,122 INFO : 98% Done

13 Sep 2020 11:01:32,138 INFO : Done calculating calibration curves.

13 Sep 2020 11:01:32,141 INFO : Creating and populating temp tables for Proportion values

13 Sep 2020 11:01:32,172 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

13 Sep 2020 11:01:32,206 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

13 Sep 2020 11:01:32,228 INFO : Cleaning up temp tables

13 Sep 2020 11:01:32,919 INFO : Completed import of Skyline document from PRM_60min_2020-09-11_15-51-41.sky.zip

13 Sep 2020 11:01:32,927 INFO : 100% Done

13 Sep 2020 11:01:32,940 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/PRM/xar/experiments_and_runs.xar.exploded/Run91884/PRM_60min_2020-09-11_15-51-41.sky.zip into the system

13 Sep 2020 11:01:32,940 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/PRM/xar/experiments_and_runs.xar.exploded/Run91883/PRM_9min_2020-09-11_15-50-27/PRM_9min.skyd into the system

13 Sep 2020 11:01:32,942 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/PRM/xar/experiments_and_runs.xar.exploded/Run91883/PRM_9min_2020-09-11_15-50-27/PRM_9min.skyd into the system

13 Sep 2020 11:01:32,942 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/PRM/xar/experiments_and_runs.xar.exploded/Run91883/PRM_9min_2020-09-11_15-50-27.sky.zip into the system

13 Sep 2020 11:01:32,945 INFO : Starting import from PRM_9min_2020-09-11_15-50-27.sky.zip

13 Sep 2020 11:01:32,954 INFO : Starting to import Skyline document from PRM_9min_2020-09-11_15-50-27.sky.zip

13 Sep 2020 11:01:32,955 INFO : Expanding LIB_SARS_CoV_2.blib

13 Sep 2020 11:01:32,960 INFO : Expanding PRM_9min.skyd

13 Sep 2020 11:01:32,964 INFO : Expanding PRM_9min.sky.view

13 Sep 2020 11:01:32,965 INFO : Expanding PRM_9min.sky

13 Sep 2020 11:01:32,972 WARN : The version of this Skyline document is 20.14. This is newer than the highest supported version 4.1

13 Sep 2020 11:01:32,981 INFO : 4% Done

13 Sep 2020 11:01:33,236 INFO : Inserting sp|P0DTC9|NCAP_SARS2

13 Sep 2020 11:01:33,253 INFO : 14% Done

13 Sep 2020 11:01:33,454 INFO : 22% Done

13 Sep 2020 11:01:33,537 INFO : 34% Done

13 Sep 2020 11:01:33,652 INFO : 38% Done

13 Sep 2020 11:01:33,712 INFO : 48% Done

13 Sep 2020 11:01:33,820 INFO : 54% Done

13 Sep 2020 11:01:33,871 INFO : 62% Done

13 Sep 2020 11:01:33,984 INFO : 70% Done

13 Sep 2020 11:01:34,060 DEBUG: Total peptides inserted: 8

13 Sep 2020 11:01:34,067 INFO : 72% Done

13 Sep 2020 11:01:34,220 INFO : Inserting sp|P10645|CMGA_HUMAN

13 Sep 2020 11:01:34,334 INFO : 80% Done

13 Sep 2020 11:01:34,550 DEBUG: Total peptides inserted: 1

13 Sep 2020 11:01:34,551 INFO : Done parsing Skyline document.

13 Sep 2020 11:01:34,558 INFO : No group comparisons found.

13 Sep 2020 11:01:34,558 INFO : Calculating calibration curves

13 Sep 2020 11:01:34,560 DEBUG: Calculating calibration curve for sp|P10645|CMGA_HUMAN, 1 of 2

13 Sep 2020 11:01:34,643 INFO : 89% Done

13 Sep 2020 11:01:34,643 DEBUG: Calculating calibration curve for sp|P0DTC9|NCAP_SARS2, 2 of 2

13 Sep 2020 11:01:34,887 INFO : 98% Done

13 Sep 2020 11:01:34,898 INFO : Done calculating calibration curves.

13 Sep 2020 11:01:34,901 INFO : Creating and populating temp tables for Proportion values

13 Sep 2020 11:01:34,944 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

13 Sep 2020 11:01:34,964 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

13 Sep 2020 11:01:34,979 INFO : Cleaning up temp tables

13 Sep 2020 11:01:35,433 INFO : Completed import of Skyline document from PRM_9min_2020-09-11_15-50-27.sky.zip

13 Sep 2020 11:01:35,442 INFO : 100% Done

13 Sep 2020 11:01:35,453 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/PRM/xar/experiments_and_runs.xar.exploded/Run91883/PRM_9min_2020-09-11_15-50-27.sky.zip into the system

13 Sep 2020 11:01:35,483 INFO : Done importing xar

13 Sep 2020 11:01:35,490 INFO : Loading pages and webpart properties

13 Sep 2020 11:01:35,724 INFO : Done importing pages and webpart properties

13 Sep 2020 11:01:35,724 INFO : Done importing folder archive for PRM

13 Sep 2020 11:01:35,903 INFO : New container created with inherited permissions for Tier_1

13 Sep 2020 11:01:35,903 INFO : Loading folder archive for Tier_1

13 Sep 2020 11:01:35,908 INFO : Loading folder properties (folder type, settings and active modules)

13 Sep 2020 11:01:36,072 INFO : Done importing folder properties (folder type, settings and active modules)

13 Sep 2020 11:01:36,078 INFO : Loading etl definitions

13 Sep 2020 11:01:36,084 INFO : Loading wikis

13 Sep 2020 11:01:36,117 INFO : 1 wiki imported

13 Sep 2020 11:01:36,117 INFO : Done importing wikis

13 Sep 2020 11:01:36,131 INFO : Starting to copy files

13 Sep 2020 11:01:52,733 INFO : Copied 684 files

13 Sep 2020 11:01:52,734 INFO : Ensuring exp.data rows exist for imported files

13 Sep 2020 11:02:03,724 INFO : Loading lists

13 Sep 2020 11:02:03,967 INFO : Recreating list: _SamplesLocation

13 Sep 2020 11:02:05,094 INFO : Recreating list: Master_datasheet

13 Sep 2020 11:02:05,352 INFO : Recreating list: _JobPriority

13 Sep 2020 11:02:05,480 INFO : Recreating list: _TaskStatus

13 Sep 2020 11:02:06,428 INFO : 4 lists imported successfully

13 Sep 2020 11:02:06,429 INFO : Done importing lists

13 Sep 2020 11:02:06,431 INFO : Loading xar

13 Sep 2020 11:02:06,591 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-7597:TargetedMS.ImportSkyZip'

13 Sep 2020 11:02:06,594 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-7597:TargetedMS.ImportSkyZip.Core'

13 Sep 2020 11:02:06,597 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-7597:TargetedMS.ImportSkyZip.Output'

13 Sep 2020 11:02:06,597 DEBUG: Protocol import complete

13 Sep 2020 11:02:06,706 DEBUG: Protocol action set import complete

13 Sep 2020 11:02:06,715 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7597:TargetedMS.ImportSkyZip'

13 Sep 2020 11:02:06,723 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-7597:0c8d64f3-d5e2-1038-9455-3013bb9b8170'

13 Sep 2020 11:02:06,769 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-7597:0c8d64da-d5e2-1038-9455-3013bb9b8170'

13 Sep 2020 11:02:06,769 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7597:TargetedMS.ImportSkyZip.Core'

13 Sep 2020 11:02:06,778 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7597:TargetedMS.ImportSkyZip.Output'

13 Sep 2020 11:02:06,780 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-7597:0c8d650a-d5e2-1038-9455-3013bb9b8170'

13 Sep 2020 11:02:06,812 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7597:TargetedMS.ImportSkyZip'

13 Sep 2020 11:02:06,828 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-7597:ead33bbd-d5e0-1038-9455-3013bb9b8170'

13 Sep 2020 11:02:06,845 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-7597:ead33b83-d5e0-1038-9455-3013bb9b8170'

13 Sep 2020 11:02:06,845 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7597:TargetedMS.ImportSkyZip.Core'

13 Sep 2020 11:02:06,851 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7597:TargetedMS.ImportSkyZip.Output'

13 Sep 2020 11:02:06,852 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-7597:ead33bd9-d5e0-1038-9455-3013bb9b8170'

13 Sep 2020 11:02:06,863 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7597:TargetedMS.ImportSkyZip'

13 Sep 2020 11:02:06,877 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-7597:ead3234e-d5e0-1038-9455-3013bb9b8170'

13 Sep 2020 11:02:06,889 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-7597:ead32328-d5e0-1038-9455-3013bb9b8170'

13 Sep 2020 11:02:06,889 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7597:TargetedMS.ImportSkyZip.Core'

13 Sep 2020 11:02:06,894 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7597:TargetedMS.ImportSkyZip.Output'

13 Sep 2020 11:02:06,896 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-7597:ead32364-d5e0-1038-9455-3013bb9b8170'

13 Sep 2020 11:02:06,907 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7597:TargetedMS.ImportSkyZip'

13 Sep 2020 11:02:06,921 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-7597:ead3214c-d5e0-1038-9455-3013bb9b8170'

13 Sep 2020 11:02:06,933 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-7597:ead3213a-d5e0-1038-9455-3013bb9b8170'

13 Sep 2020 11:02:06,933 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7597:TargetedMS.ImportSkyZip.Core'

13 Sep 2020 11:02:06,938 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7597:TargetedMS.ImportSkyZip.Output'

13 Sep 2020 11:02:06,940 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-7597:ead3215f-d5e0-1038-9455-3013bb9b8170'

13 Sep 2020 11:02:06,951 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7597:TargetedMS.ImportSkyZip'

13 Sep 2020 11:02:06,965 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-7597:ead32026-d5e0-1038-9455-3013bb9b8170'

13 Sep 2020 11:02:06,977 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-7597:ead32018-d5e0-1038-9455-3013bb9b8170'

13 Sep 2020 11:02:06,977 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7597:TargetedMS.ImportSkyZip.Core'

13 Sep 2020 11:02:06,983 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7597:TargetedMS.ImportSkyZip.Output'

13 Sep 2020 11:02:06,985 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-7597:ead32035-d5e0-1038-9455-3013bb9b8170'

13 Sep 2020 11:02:06,996 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7597:TargetedMS.ImportSkyZip'

13 Sep 2020 11:02:07,009 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-7597:ead31f2d-d5e0-1038-9455-3013bb9b8170'

13 Sep 2020 11:02:07,021 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-7597:ead31f1c-d5e0-1038-9455-3013bb9b8170'

13 Sep 2020 11:02:07,021 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7597:TargetedMS.ImportSkyZip.Core'

13 Sep 2020 11:02:07,028 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7597:TargetedMS.ImportSkyZip.Output'

13 Sep 2020 11:02:07,029 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-7597:ead31f42-d5e0-1038-9455-3013bb9b8170'

13 Sep 2020 11:02:07,041 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7597:TargetedMS.ImportSkyZip'

13 Sep 2020 11:02:07,055 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-7597:ead31e00-d5e0-1038-9455-3013bb9b8170'

13 Sep 2020 11:02:07,068 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-7597:ead31dc1-d5e0-1038-9455-3013bb9b8170'

13 Sep 2020 11:02:07,068 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7597:TargetedMS.ImportSkyZip.Core'

13 Sep 2020 11:02:07,074 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7597:TargetedMS.ImportSkyZip.Output'

13 Sep 2020 11:02:07,076 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-7597:ead31e12-d5e0-1038-9455-3013bb9b8170'

13 Sep 2020 11:02:07,088 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7597:TargetedMS.ImportSkyZip'

13 Sep 2020 11:02:07,102 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-7597:ead31a45-d5e0-1038-9455-3013bb9b8170'

13 Sep 2020 11:02:07,114 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-7597:3508eeee-d5df-1038-9455-3013bb9b8170'

13 Sep 2020 11:02:07,114 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7597:TargetedMS.ImportSkyZip.Core'

13 Sep 2020 11:02:07,121 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7597:TargetedMS.ImportSkyZip.Output'

13 Sep 2020 11:02:07,122 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-7597:ead31a50-d5e0-1038-9455-3013bb9b8170'

13 Sep 2020 11:02:07,134 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7597:TargetedMS.ImportSkyZip'

13 Sep 2020 11:02:07,177 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-7597:ef4de398-d5dd-1038-9455-3013bb9b8170'

13 Sep 2020 11:02:07,191 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-7597:ef4de377-d5dd-1038-9455-3013bb9b8170'

13 Sep 2020 11:02:07,191 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7597:TargetedMS.ImportSkyZip.Core'

13 Sep 2020 11:02:07,198 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7597:TargetedMS.ImportSkyZip.Output'

13 Sep 2020 11:02:07,200 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-7597:ef4de3a0-d5dd-1038-9455-3013bb9b8170'

13 Sep 2020 11:02:07,212 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7597:TargetedMS.ImportSkyZip'

13 Sep 2020 11:02:07,229 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-7597:ef4de139-d5dd-1038-9455-3013bb9b8170'

13 Sep 2020 11:02:07,242 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-7597:ef4de10f-d5dd-1038-9455-3013bb9b8170'

13 Sep 2020 11:02:07,243 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7597:TargetedMS.ImportSkyZip.Core'

13 Sep 2020 11:02:07,249 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7597:TargetedMS.ImportSkyZip.Output'

13 Sep 2020 11:02:07,251 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-7597:ef4de143-d5dd-1038-9455-3013bb9b8170'

13 Sep 2020 11:02:07,263 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7597:TargetedMS.ImportSkyZip'

13 Sep 2020 11:02:07,277 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-7597:ef4ddee8-d5dd-1038-9455-3013bb9b8170'

13 Sep 2020 11:02:07,288 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-7597:ef4ddec8-d5dd-1038-9455-3013bb9b8170'

13 Sep 2020 11:02:07,288 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7597:TargetedMS.ImportSkyZip.Core'

13 Sep 2020 11:02:07,310 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7597:TargetedMS.ImportSkyZip.Output'

13 Sep 2020 11:02:07,312 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-7597:ef4ddf04-d5dd-1038-9455-3013bb9b8170'

13 Sep 2020 11:02:07,321 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7597:TargetedMS.ImportSkyZip'

13 Sep 2020 11:02:07,332 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-7597:ef4ddc40-d5dd-1038-9455-3013bb9b8170'

13 Sep 2020 11:02:07,342 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-7597:ef4ddc24-d5dd-1038-9455-3013bb9b8170'

13 Sep 2020 11:02:07,342 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7597:TargetedMS.ImportSkyZip.Core'

13 Sep 2020 11:02:07,347 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7597:TargetedMS.ImportSkyZip.Output'

13 Sep 2020 11:02:07,348 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-7597:ef4ddc4f-d5dd-1038-9455-3013bb9b8170'

13 Sep 2020 11:02:07,357 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7597:TargetedMS.ImportSkyZip'

13 Sep 2020 11:02:07,407 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-7597:ef4dda25-d5dd-1038-9455-3013bb9b8170'

13 Sep 2020 11:02:07,416 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-7597:ef4dda01-d5dd-1038-9455-3013bb9b8170'

13 Sep 2020 11:02:07,416 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7597:TargetedMS.ImportSkyZip.Core'

13 Sep 2020 11:02:07,421 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7597:TargetedMS.ImportSkyZip.Output'

13 Sep 2020 11:02:07,422 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-7597:ef4dda2f-d5dd-1038-9455-3013bb9b8170'

13 Sep 2020 11:02:07,432 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7597:TargetedMS.ImportSkyZip'

13 Sep 2020 11:02:07,443 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-7597:ef4dd741-d5dd-1038-9455-3013bb9b8170'

13 Sep 2020 11:02:07,453 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-7597:ef4dd669-d5dd-1038-9455-3013bb9b8170'

13 Sep 2020 11:02:07,453 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7597:TargetedMS.ImportSkyZip.Core'

13 Sep 2020 11:02:07,458 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7597:TargetedMS.ImportSkyZip.Output'

13 Sep 2020 11:02:07,459 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-7597:ef4dd75a-d5dd-1038-9455-3013bb9b8170'

13 Sep 2020 11:02:07,463 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91830/200821_1358_2020-09-10_19-22-30/200821_1358.skyd into the system

13 Sep 2020 11:02:07,465 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91830/200821_1358_2020-09-10_19-22-30/200821_1358.skyd into the system

13 Sep 2020 11:02:07,465 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91830/200821_1358_2020-09-10_19-22-30.sky.zip into the system

13 Sep 2020 11:02:07,468 INFO : Starting import from 200821_1358_2020-09-10_19-22-30.sky.zip

13 Sep 2020 11:02:07,476 INFO : Starting to import Skyline document from 200821_1358_2020-09-10_19-22-30.sky.zip

13 Sep 2020 11:02:07,477 INFO : Expanding LIB_SARS_CoV_2.blib

13 Sep 2020 11:02:07,481 INFO : Expanding 200821_1358.skyd

13 Sep 2020 11:02:07,488 INFO : Expanding 200821_1358.sky.view

13 Sep 2020 11:02:07,489 INFO : Expanding 200821_1358.sky

13 Sep 2020 11:02:07,496 WARN : The version of this Skyline document is 20.14. This is newer than the highest supported version 4.1

13 Sep 2020 11:02:07,507 INFO : 10% Done

13 Sep 2020 11:02:07,664 INFO : Inserting sp|P0DTC9|NCAP_SARS2

13 Sep 2020 11:02:07,688 INFO : 38% Done

13 Sep 2020 11:02:08,670 INFO : 66% Done

13 Sep 2020 11:02:09,220 DEBUG: Total peptides inserted: 2

13 Sep 2020 11:02:09,313 INFO : Inserting sp|P60709|ACTB_HUMAN

13 Sep 2020 11:02:09,379 INFO : 80% Done

13 Sep 2020 11:02:09,528 DEBUG: Total peptides inserted: 1

13 Sep 2020 11:02:09,528 INFO : Done parsing Skyline document.

13 Sep 2020 11:02:09,537 INFO : No group comparisons found.

13 Sep 2020 11:02:09,537 INFO : Calculating calibration curves

13 Sep 2020 11:02:09,539 DEBUG: Calculating calibration curve for sp|P60709|ACTB_HUMAN, 1 of 2

13 Sep 2020 11:02:09,586 INFO : 89% Done

13 Sep 2020 11:02:09,587 DEBUG: Calculating calibration curve for sp|P0DTC9|NCAP_SARS2, 2 of 2

13 Sep 2020 11:02:09,738 INFO : 98% Done

13 Sep 2020 11:02:09,794 INFO : Done calculating calibration curves.

13 Sep 2020 11:02:09,796 INFO : Creating and populating temp tables for Proportion values

13 Sep 2020 11:02:09,825 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

13 Sep 2020 11:02:09,923 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

13 Sep 2020 11:02:09,942 INFO : Cleaning up temp tables

13 Sep 2020 11:02:10,426 INFO : Completed import of Skyline document from 200821_1358_2020-09-10_19-22-30.sky.zip

13 Sep 2020 11:02:10,434 INFO : 100% Done

13 Sep 2020 11:02:10,446 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91830/200821_1358_2020-09-10_19-22-30.sky.zip into the system

13 Sep 2020 11:02:10,446 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91829/200821_1134_2020-09-10_19-21-42/200821_1134.skyd into the system

13 Sep 2020 11:02:10,448 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91829/200821_1134_2020-09-10_19-21-42/200821_1134.skyd into the system

13 Sep 2020 11:02:10,448 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91829/200821_1134_2020-09-10_19-21-42.sky.zip into the system

13 Sep 2020 11:02:10,451 INFO : Starting import from 200821_1134_2020-09-10_19-21-42.sky.zip

13 Sep 2020 11:02:10,457 INFO : Starting to import Skyline document from 200821_1134_2020-09-10_19-21-42.sky.zip

13 Sep 2020 11:02:10,459 INFO : Expanding LIB_SARS_CoV_2.blib

13 Sep 2020 11:02:10,463 INFO : Expanding 200821_1134.skyd

13 Sep 2020 11:02:10,473 INFO : Expanding 200821_1134.sky.view

13 Sep 2020 11:02:10,474 INFO : Expanding 200821_1134.sky

13 Sep 2020 11:02:10,482 WARN : The version of this Skyline document is 20.14. This is newer than the highest supported version 4.1

13 Sep 2020 11:02:10,493 INFO : 10% Done

13 Sep 2020 11:02:10,661 INFO : Inserting sp|P0DTC9|NCAP_SARS2

13 Sep 2020 11:02:10,684 INFO : 38% Done

13 Sep 2020 11:02:11,856 INFO : 66% Done

13 Sep 2020 11:02:12,327 DEBUG: Total peptides inserted: 2

13 Sep 2020 11:02:12,338 INFO : Inserting sp|P60709|ACTB_HUMAN

13 Sep 2020 11:02:12,348 INFO : 80% Done

13 Sep 2020 11:02:12,471 DEBUG: Total peptides inserted: 1

13 Sep 2020 11:02:12,471 INFO : Done parsing Skyline document.

13 Sep 2020 11:02:12,479 INFO : No group comparisons found.

13 Sep 2020 11:02:12,480 INFO : Calculating calibration curves

13 Sep 2020 11:02:12,481 DEBUG: Calculating calibration curve for sp|P60709|ACTB_HUMAN, 1 of 2

13 Sep 2020 11:02:12,518 INFO : 89% Done

13 Sep 2020 11:02:12,519 DEBUG: Calculating calibration curve for sp|P0DTC9|NCAP_SARS2, 2 of 2

13 Sep 2020 11:02:12,640 INFO : 98% Done

13 Sep 2020 11:02:12,695 INFO : Done calculating calibration curves.

13 Sep 2020 11:02:12,697 INFO : Creating and populating temp tables for Proportion values

13 Sep 2020 11:02:12,726 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

13 Sep 2020 11:02:12,828 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

13 Sep 2020 11:02:12,846 INFO : Cleaning up temp tables

13 Sep 2020 11:02:13,320 INFO : Completed import of Skyline document from 200821_1134_2020-09-10_19-21-42.sky.zip

13 Sep 2020 11:02:13,328 INFO : 100% Done

13 Sep 2020 11:02:13,341 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91829/200821_1134_2020-09-10_19-21-42.sky.zip into the system

13 Sep 2020 11:02:13,341 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91828/200820_1557_2020-09-10_19-21-02/200820_1557.skyd into the system

13 Sep 2020 11:02:13,342 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91828/200820_1557_2020-09-10_19-21-02/200820_1557.skyd into the system

13 Sep 2020 11:02:13,342 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91828/200820_1557_2020-09-10_19-21-02.sky.zip into the system

13 Sep 2020 11:02:13,346 INFO : Starting import from 200820_1557_2020-09-10_19-21-02.sky.zip

13 Sep 2020 11:02:13,354 INFO : Starting to import Skyline document from 200820_1557_2020-09-10_19-21-02.sky.zip

13 Sep 2020 11:02:13,355 INFO : Expanding LIB_SARS_CoV_2.blib

13 Sep 2020 11:02:13,360 INFO : Expanding 200820_1557.skyd

13 Sep 2020 11:02:13,372 INFO : Expanding 200820_1557.sky.view

13 Sep 2020 11:02:13,373 INFO : Expanding 200820_1557.sky

13 Sep 2020 11:02:13,382 WARN : The version of this Skyline document is 20.14. This is newer than the highest supported version 4.1

13 Sep 2020 11:02:13,394 INFO : 10% Done

13 Sep 2020 11:02:13,622 INFO : Inserting sp|P0DTC9|NCAP_SARS2

13 Sep 2020 11:02:13,640 INFO : 38% Done

13 Sep 2020 11:02:14,217 INFO : 66% Done

13 Sep 2020 11:02:14,700 DEBUG: Total peptides inserted: 2

13 Sep 2020 11:02:14,710 INFO : Inserting sp|P60709|ACTB_HUMAN

13 Sep 2020 11:02:14,720 INFO : 80% Done

13 Sep 2020 11:02:14,933 DEBUG: Total peptides inserted: 1

13 Sep 2020 11:02:14,933 INFO : Done parsing Skyline document.

13 Sep 2020 11:02:14,942 INFO : No group comparisons found.

13 Sep 2020 11:02:14,943 INFO : Calculating calibration curves

13 Sep 2020 11:02:14,944 DEBUG: Calculating calibration curve for sp|P60709|ACTB_HUMAN, 1 of 2

13 Sep 2020 11:02:14,987 INFO : 89% Done

13 Sep 2020 11:02:14,987 DEBUG: Calculating calibration curve for sp|P0DTC9|NCAP_SARS2, 2 of 2

13 Sep 2020 11:02:15,119 INFO : 98% Done

13 Sep 2020 11:02:15,122 INFO : Done calculating calibration curves.

13 Sep 2020 11:02:15,124 INFO : Creating and populating temp tables for Proportion values

13 Sep 2020 11:02:15,154 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

13 Sep 2020 11:02:15,269 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

13 Sep 2020 11:02:15,304 INFO : Cleaning up temp tables

13 Sep 2020 11:02:15,757 INFO : Completed import of Skyline document from 200820_1557_2020-09-10_19-21-02.sky.zip

13 Sep 2020 11:02:15,765 INFO : 100% Done

13 Sep 2020 11:02:15,778 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91828/200820_1557_2020-09-10_19-21-02.sky.zip into the system

13 Sep 2020 11:02:15,778 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91827/200806_1428_2020-09-10_19-20-01/200806_1428.skyd into the system

13 Sep 2020 11:02:15,779 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91827/200806_1428_2020-09-10_19-20-01/200806_1428.skyd into the system

13 Sep 2020 11:02:15,779 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91827/200806_1428_2020-09-10_19-20-01.sky.zip into the system

13 Sep 2020 11:02:15,783 INFO : Starting import from 200806_1428_2020-09-10_19-20-01.sky.zip

13 Sep 2020 11:02:15,790 INFO : Starting to import Skyline document from 200806_1428_2020-09-10_19-20-01.sky.zip

13 Sep 2020 11:02:15,791 INFO : Expanding LIB_SARS_CoV_2.blib

13 Sep 2020 11:02:15,795 INFO : Expanding 200806_1428.skyd

13 Sep 2020 11:02:15,804 INFO : Expanding 200806_1428.sky.view

13 Sep 2020 11:02:15,805 INFO : Expanding 200806_1428.sky

13 Sep 2020 11:02:15,813 WARN : The version of this Skyline document is 20.14. This is newer than the highest supported version 4.1

13 Sep 2020 11:02:15,823 INFO : 10% Done

13 Sep 2020 11:02:15,974 INFO : Inserting sp|P0DTC9|NCAP_SARS2

13 Sep 2020 11:02:16,066 INFO : 38% Done

13 Sep 2020 11:02:16,582 INFO : 66% Done

13 Sep 2020 11:02:17,031 DEBUG: Total peptides inserted: 2

13 Sep 2020 11:02:17,041 INFO : Inserting sp|P60709|ACTB_HUMAN

13 Sep 2020 11:02:17,052 INFO : 80% Done

13 Sep 2020 11:02:17,174 DEBUG: Total peptides inserted: 1

13 Sep 2020 11:02:17,174 INFO : Done parsing Skyline document.

13 Sep 2020 11:02:17,183 INFO : No group comparisons found.

13 Sep 2020 11:02:17,183 INFO : Calculating calibration curves

13 Sep 2020 11:02:17,184 DEBUG: Calculating calibration curve for sp|P60709|ACTB_HUMAN, 1 of 2

13 Sep 2020 11:02:17,223 INFO : 89% Done

13 Sep 2020 11:02:17,224 DEBUG: Calculating calibration curve for sp|P0DTC9|NCAP_SARS2, 2 of 2

13 Sep 2020 11:02:17,334 INFO : 98% Done

13 Sep 2020 11:02:17,337 INFO : Done calculating calibration curves.

13 Sep 2020 11:02:17,340 INFO : Creating and populating temp tables for Proportion values

13 Sep 2020 11:02:17,381 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

13 Sep 2020 11:02:17,421 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

13 Sep 2020 11:02:17,439 INFO : Cleaning up temp tables

13 Sep 2020 11:02:17,883 INFO : Completed import of Skyline document from 200806_1428_2020-09-10_19-20-01.sky.zip

13 Sep 2020 11:02:17,891 INFO : 100% Done

13 Sep 2020 11:02:17,902 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91827/200806_1428_2020-09-10_19-20-01.sky.zip into the system

13 Sep 2020 11:02:17,902 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91826/200805_1136_2020-09-10_19-19-12/200805_1136.skyd into the system

13 Sep 2020 11:02:17,903 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91826/200805_1136_2020-09-10_19-19-12/200805_1136.skyd into the system

13 Sep 2020 11:02:17,904 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91826/200805_1136_2020-09-10_19-19-12.sky.zip into the system

13 Sep 2020 11:02:17,907 INFO : Starting import from 200805_1136_2020-09-10_19-19-12.sky.zip

13 Sep 2020 11:02:17,914 INFO : Starting to import Skyline document from 200805_1136_2020-09-10_19-19-12.sky.zip

13 Sep 2020 11:02:17,915 INFO : Expanding LIB_SARS_CoV_2.blib

13 Sep 2020 11:02:17,919 INFO : Expanding 200805_1136.skyd

13 Sep 2020 11:02:17,931 INFO : Expanding 200805_1136.sky.view

13 Sep 2020 11:02:17,932 INFO : Expanding 200805_1136.sky

13 Sep 2020 11:02:17,940 WARN : The version of this Skyline document is 20.14. This is newer than the highest supported version 4.1

13 Sep 2020 11:02:17,951 INFO : 10% Done

13 Sep 2020 11:02:18,198 INFO : Inserting sp|P0DTC9|NCAP_SARS2

13 Sep 2020 11:02:18,217 INFO : 38% Done

13 Sep 2020 11:02:18,882 INFO : 66% Done

13 Sep 2020 11:02:19,336 DEBUG: Total peptides inserted: 2

13 Sep 2020 11:02:19,346 INFO : Inserting sp|P60709|ACTB_HUMAN

13 Sep 2020 11:02:19,356 INFO : 80% Done

13 Sep 2020 11:02:19,536 DEBUG: Total peptides inserted: 1

13 Sep 2020 11:02:19,536 INFO : Done parsing Skyline document.

13 Sep 2020 11:02:19,545 INFO : No group comparisons found.

13 Sep 2020 11:02:19,546 INFO : Calculating calibration curves

13 Sep 2020 11:02:19,547 DEBUG: Calculating calibration curve for sp|P60709|ACTB_HUMAN, 1 of 2

13 Sep 2020 11:02:19,592 INFO : 89% Done

13 Sep 2020 11:02:19,592 DEBUG: Calculating calibration curve for sp|P0DTC9|NCAP_SARS2, 2 of 2

13 Sep 2020 11:02:19,724 INFO : 98% Done

13 Sep 2020 11:02:19,728 INFO : Done calculating calibration curves.

13 Sep 2020 11:02:19,730 INFO : Creating and populating temp tables for Proportion values

13 Sep 2020 11:02:19,760 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

13 Sep 2020 11:02:19,847 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

13 Sep 2020 11:02:19,869 INFO : Cleaning up temp tables

13 Sep 2020 11:02:20,365 INFO : Completed import of Skyline document from 200805_1136_2020-09-10_19-19-12.sky.zip

13 Sep 2020 11:02:20,375 INFO : 100% Done

13 Sep 2020 11:02:20,390 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91826/200805_1136_2020-09-10_19-19-12.sky.zip into the system

13 Sep 2020 11:02:20,391 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91825/200804_0953_2020-09-10_19-18-30/200804_0953.skyd into the system

13 Sep 2020 11:02:20,393 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91825/200804_0953_2020-09-10_19-18-30/200804_0953.skyd into the system

13 Sep 2020 11:02:20,393 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91825/200804_0953_2020-09-10_19-18-30.sky.zip into the system

13 Sep 2020 11:02:20,398 INFO : Starting import from 200804_0953_2020-09-10_19-18-30.sky.zip

13 Sep 2020 11:02:20,407 INFO : Starting to import Skyline document from 200804_0953_2020-09-10_19-18-30.sky.zip

13 Sep 2020 11:02:20,408 INFO : Expanding LIB_SARS_CoV_2.blib

13 Sep 2020 11:02:20,413 INFO : Expanding 200804_0953.skyd

13 Sep 2020 11:02:20,425 INFO : Expanding 200804_0953.sky.view

13 Sep 2020 11:02:20,426 INFO : Expanding 200804_0953.sky

13 Sep 2020 11:02:20,435 WARN : The version of this Skyline document is 20.14. This is newer than the highest supported version 4.1

13 Sep 2020 11:02:20,447 INFO : 10% Done

13 Sep 2020 11:02:20,698 INFO : Inserting sp|P0DTC9|NCAP_SARS2

13 Sep 2020 11:02:20,718 INFO : 38% Done

13 Sep 2020 11:02:21,327 INFO : 66% Done

13 Sep 2020 11:02:21,856 DEBUG: Total peptides inserted: 2

13 Sep 2020 11:02:21,866 INFO : Inserting sp|P60709|ACTB_HUMAN

13 Sep 2020 11:02:21,876 INFO : 80% Done

13 Sep 2020 11:02:22,027 DEBUG: Total peptides inserted: 1

13 Sep 2020 11:02:22,027 INFO : Done parsing Skyline document.

13 Sep 2020 11:02:22,037 INFO : No group comparisons found.

13 Sep 2020 11:02:22,037 INFO : Calculating calibration curves

13 Sep 2020 11:02:22,039 DEBUG: Calculating calibration curve for sp|P60709|ACTB_HUMAN, 1 of 2

13 Sep 2020 11:02:22,079 INFO : 89% Done

13 Sep 2020 11:02:22,079 DEBUG: Calculating calibration curve for sp|P0DTC9|NCAP_SARS2, 2 of 2

13 Sep 2020 11:02:22,199 INFO : 98% Done

13 Sep 2020 11:02:22,202 INFO : Done calculating calibration curves.

13 Sep 2020 11:02:22,205 INFO : Creating and populating temp tables for Proportion values

13 Sep 2020 11:02:22,234 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

13 Sep 2020 11:02:22,353 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

13 Sep 2020 11:02:22,375 INFO : Cleaning up temp tables

13 Sep 2020 11:02:22,850 INFO : Completed import of Skyline document from 200804_0953_2020-09-10_19-18-30.sky.zip

13 Sep 2020 11:02:22,858 INFO : 100% Done

13 Sep 2020 11:02:22,871 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91825/200804_0953_2020-09-10_19-18-30.sky.zip into the system

13 Sep 2020 11:02:22,871 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91824/200729_1036_2020-09-10_19-17-39/200729_1036.skyd into the system

13 Sep 2020 11:02:22,873 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91824/200729_1036_2020-09-10_19-17-39/200729_1036.skyd into the system

13 Sep 2020 11:02:22,873 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91824/200729_1036_2020-09-10_19-17-39.sky.zip into the system

13 Sep 2020 11:02:22,877 INFO : Starting import from 200729_1036_2020-09-10_19-17-39.sky.zip

13 Sep 2020 11:02:22,884 INFO : Starting to import Skyline document from 200729_1036_2020-09-10_19-17-39.sky.zip

13 Sep 2020 11:02:22,886 INFO : Expanding LIB_SARS_CoV_2.blib

13 Sep 2020 11:02:22,890 INFO : Expanding 200729_1036.skyd

13 Sep 2020 11:02:22,902 INFO : Expanding 200729_1036.sky.view

13 Sep 2020 11:02:22,903 INFO : Expanding 200729_1036.sky

13 Sep 2020 11:02:22,911 WARN : The version of this Skyline document is 20.14. This is newer than the highest supported version 4.1

13 Sep 2020 11:02:22,923 INFO : 10% Done

13 Sep 2020 11:02:23,122 INFO : Inserting sp|P0DTC9|NCAP_SARS2

13 Sep 2020 11:02:23,140 INFO : 38% Done

13 Sep 2020 11:02:23,559 INFO : 66% Done

13 Sep 2020 11:02:23,973 DEBUG: Total peptides inserted: 2

13 Sep 2020 11:02:23,984 INFO : Inserting sp|P60709|ACTB_HUMAN

13 Sep 2020 11:02:23,994 INFO : 80% Done

13 Sep 2020 11:02:24,159 DEBUG: Total peptides inserted: 1

13 Sep 2020 11:02:24,160 INFO : Done parsing Skyline document.

13 Sep 2020 11:02:24,168 INFO : No group comparisons found.

13 Sep 2020 11:02:24,169 INFO : Calculating calibration curves

13 Sep 2020 11:02:24,170 DEBUG: Calculating calibration curve for sp|P60709|ACTB_HUMAN, 1 of 2

13 Sep 2020 11:02:24,212 INFO : 89% Done

13 Sep 2020 11:02:24,213 DEBUG: Calculating calibration curve for sp|P0DTC9|NCAP_SARS2, 2 of 2

13 Sep 2020 11:02:24,349 INFO : 98% Done

13 Sep 2020 11:02:24,364 INFO : Done calculating calibration curves.

13 Sep 2020 11:02:24,371 INFO : Creating and populating temp tables for Proportion values

13 Sep 2020 11:02:24,407 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

13 Sep 2020 11:02:24,497 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

13 Sep 2020 11:02:24,519 INFO : Cleaning up temp tables

13 Sep 2020 11:02:24,967 INFO : Completed import of Skyline document from 200729_1036_2020-09-10_19-17-39.sky.zip

13 Sep 2020 11:02:24,976 INFO : 100% Done

13 Sep 2020 11:02:24,988 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91824/200729_1036_2020-09-10_19-17-39.sky.zip into the system

13 Sep 2020 11:02:24,988 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91823/200728_0950r_2020-09-10_19-09-04/200728_0950r.skyd into the system

13 Sep 2020 11:02:24,990 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91823/200728_0950r_2020-09-10_19-09-04/200728_0950r.skyd into the system

13 Sep 2020 11:02:24,990 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91823/200728_0950r_2020-09-10_19-09-04.sky.zip into the system

13 Sep 2020 11:02:24,993 INFO : Starting import from 200728_0950r_2020-09-10_19-09-04.sky.zip

13 Sep 2020 11:02:25,000 INFO : Starting to import Skyline document from 200728_0950r_2020-09-10_19-09-04.sky.zip

13 Sep 2020 11:02:25,002 INFO : Expanding LIB_SARS_CoV_2.blib

13 Sep 2020 11:02:25,006 INFO : Expanding 200728_0950r.skyd

13 Sep 2020 11:02:25,018 INFO : Expanding 200728_0950r.sky.view

13 Sep 2020 11:02:25,019 INFO : Expanding 200728_0950r.sky

13 Sep 2020 11:02:25,027 WARN : The version of this Skyline document is 20.14. This is newer than the highest supported version 4.1

13 Sep 2020 11:02:25,038 INFO : 10% Done

13 Sep 2020 11:02:25,236 INFO : Inserting sp|P0DTC9|NCAP_SARS2

13 Sep 2020 11:02:25,254 INFO : 38% Done

13 Sep 2020 11:02:25,661 INFO : 66% Done

13 Sep 2020 11:02:26,071 DEBUG: Total peptides inserted: 2

13 Sep 2020 11:02:26,078 INFO : Inserting sp|P60709|ACTB_HUMAN

13 Sep 2020 11:02:26,085 INFO : 80% Done

13 Sep 2020 11:02:26,209 DEBUG: Total peptides inserted: 1

13 Sep 2020 11:02:26,209 INFO : Done parsing Skyline document.

13 Sep 2020 11:02:26,216 INFO : No group comparisons found.

13 Sep 2020 11:02:26,216 INFO : Calculating calibration curves

13 Sep 2020 11:02:26,217 DEBUG: Calculating calibration curve for sp|P60709|ACTB_HUMAN, 1 of 2

13 Sep 2020 11:02:26,244 INFO : 89% Done

13 Sep 2020 11:02:26,244 DEBUG: Calculating calibration curve for sp|P0DTC9|NCAP_SARS2, 2 of 2

13 Sep 2020 11:02:26,360 INFO : 98% Done

13 Sep 2020 11:02:26,363 INFO : Done calculating calibration curves.

13 Sep 2020 11:02:26,365 INFO : Creating and populating temp tables for Proportion values

13 Sep 2020 11:02:26,394 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

13 Sep 2020 11:02:26,503 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

13 Sep 2020 11:02:26,524 INFO : Cleaning up temp tables

13 Sep 2020 11:02:26,967 INFO : Completed import of Skyline document from 200728_0950r_2020-09-10_19-09-04.sky.zip

13 Sep 2020 11:02:26,974 INFO : 100% Done

13 Sep 2020 11:02:26,986 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91823/200728_0950r_2020-09-10_19-09-04.sky.zip into the system

13 Sep 2020 11:02:26,986 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91821/200727_1254r_2020-09-10_19-00-53/200727_1254r.skyd into the system

13 Sep 2020 11:02:26,987 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91821/200727_1254r_2020-09-10_19-00-53/200727_1254r.skyd into the system

13 Sep 2020 11:02:26,988 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91821/200727_1254r_2020-09-10_19-00-53.sky.zip into the system

13 Sep 2020 11:02:26,991 INFO : Starting import from 200727_1254r_2020-09-10_19-00-53.sky.zip

13 Sep 2020 11:02:26,998 INFO : Starting to import Skyline document from 200727_1254r_2020-09-10_19-00-53.sky.zip

13 Sep 2020 11:02:26,999 INFO : Expanding LIB_SARS_CoV_2.blib

13 Sep 2020 11:02:27,004 INFO : Expanding 200727_1254r.skyd

13 Sep 2020 11:02:27,015 INFO : Expanding 200727_1254r.sky.view

13 Sep 2020 11:02:27,016 INFO : Expanding 200727_1254r.sky

13 Sep 2020 11:02:27,025 WARN : The version of this Skyline document is 20.14. This is newer than the highest supported version 4.1

13 Sep 2020 11:02:27,035 INFO : 10% Done

13 Sep 2020 11:02:27,226 INFO : Inserting sp|P0DTC9|NCAP_SARS2

13 Sep 2020 11:02:27,244 INFO : 38% Done

13 Sep 2020 11:02:27,814 INFO : 66% Done

13 Sep 2020 11:02:28,144 DEBUG: Total peptides inserted: 2

13 Sep 2020 11:02:28,151 INFO : Inserting sp|P60709|ACTB_HUMAN

13 Sep 2020 11:02:28,159 INFO : 80% Done

13 Sep 2020 11:02:28,273 DEBUG: Total peptides inserted: 1

13 Sep 2020 11:02:28,273 INFO : Done parsing Skyline document.

13 Sep 2020 11:02:28,281 INFO : No group comparisons found.

13 Sep 2020 11:02:28,281 INFO : Calculating calibration curves

13 Sep 2020 11:02:28,283 DEBUG: Calculating calibration curve for sp|P60709|ACTB_HUMAN, 1 of 2

13 Sep 2020 11:02:28,320 INFO : 89% Done

13 Sep 2020 11:02:28,320 DEBUG: Calculating calibration curve for sp|P0DTC9|NCAP_SARS2, 2 of 2

13 Sep 2020 11:02:28,439 INFO : 98% Done

13 Sep 2020 11:02:28,442 INFO : Done calculating calibration curves.

13 Sep 2020 11:02:28,444 INFO : Creating and populating temp tables for Proportion values

13 Sep 2020 11:02:28,471 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

13 Sep 2020 11:02:28,601 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

13 Sep 2020 11:02:28,620 INFO : Cleaning up temp tables

13 Sep 2020 11:02:29,069 INFO : Completed import of Skyline document from 200727_1254r_2020-09-10_19-00-53.sky.zip

13 Sep 2020 11:02:29,077 INFO : 100% Done

13 Sep 2020 11:02:29,090 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91821/200727_1254r_2020-09-10_19-00-53.sky.zip into the system

13 Sep 2020 11:02:29,090 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91820/200724_1047_2020-09-10_18-59-46/200724_1047.skyd into the system

13 Sep 2020 11:02:29,092 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91820/200724_1047_2020-09-10_18-59-46/200724_1047.skyd into the system

13 Sep 2020 11:02:29,092 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91820/200724_1047_2020-09-10_18-59-46.sky.zip into the system

13 Sep 2020 11:02:29,097 INFO : Starting import from 200724_1047_2020-09-10_18-59-46.sky.zip

13 Sep 2020 11:02:29,104 INFO : Starting to import Skyline document from 200724_1047_2020-09-10_18-59-46.sky.zip

13 Sep 2020 11:02:29,106 INFO : Expanding LIB_SARS_CoV_2.blib

13 Sep 2020 11:02:29,110 INFO : Expanding 200724_1047.skyd

13 Sep 2020 11:02:29,120 INFO : Expanding 200724_1047.sky.view

13 Sep 2020 11:02:29,121 INFO : Expanding 200724_1047.sky

13 Sep 2020 11:02:29,130 WARN : The version of this Skyline document is 20.14. This is newer than the highest supported version 4.1

13 Sep 2020 11:02:29,141 INFO : 10% Done

13 Sep 2020 11:02:29,334 INFO : Inserting sp|P0DTC9|NCAP_SARS2

13 Sep 2020 11:02:29,350 INFO : 38% Done

13 Sep 2020 11:02:29,837 INFO : 66% Done

13 Sep 2020 11:02:30,153 DEBUG: Total peptides inserted: 2

13 Sep 2020 11:02:30,162 INFO : Inserting sp|P60709|ACTB_HUMAN

13 Sep 2020 11:02:30,171 INFO : 80% Done

13 Sep 2020 11:02:30,316 DEBUG: Total peptides inserted: 1

13 Sep 2020 11:02:30,316 INFO : Done parsing Skyline document.

13 Sep 2020 11:02:30,325 INFO : No group comparisons found.

13 Sep 2020 11:02:30,325 INFO : Calculating calibration curves

13 Sep 2020 11:02:30,327 DEBUG: Calculating calibration curve for sp|P60709|ACTB_HUMAN, 1 of 2

13 Sep 2020 11:02:30,365 INFO : 89% Done

13 Sep 2020 11:02:30,365 DEBUG: Calculating calibration curve for sp|P0DTC9|NCAP_SARS2, 2 of 2

13 Sep 2020 11:02:30,483 INFO : 98% Done

13 Sep 2020 11:02:30,486 INFO : Done calculating calibration curves.

13 Sep 2020 11:02:30,489 INFO : Creating and populating temp tables for Proportion values

13 Sep 2020 11:02:30,517 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

13 Sep 2020 11:02:30,584 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

13 Sep 2020 11:02:30,604 INFO : Cleaning up temp tables

13 Sep 2020 11:02:31,042 INFO : Completed import of Skyline document from 200724_1047_2020-09-10_18-59-46.sky.zip

13 Sep 2020 11:02:31,050 INFO : 100% Done

13 Sep 2020 11:02:31,062 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91820/200724_1047_2020-09-10_18-59-46.sky.zip into the system

13 Sep 2020 11:02:31,063 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91819/200723_1126_2020-09-10_18-58-38/200723_1126.skyd into the system

13 Sep 2020 11:02:31,064 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91819/200723_1126_2020-09-10_18-58-38/200723_1126.skyd into the system

13 Sep 2020 11:02:31,064 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91819/200723_1126_2020-09-10_18-58-38.sky.zip into the system

13 Sep 2020 11:02:31,067 INFO : Starting import from 200723_1126_2020-09-10_18-58-38.sky.zip

13 Sep 2020 11:02:31,074 INFO : Starting to import Skyline document from 200723_1126_2020-09-10_18-58-38.sky.zip

13 Sep 2020 11:02:31,076 INFO : Expanding LIB_SARS_CoV_2.blib

13 Sep 2020 11:02:31,080 INFO : Expanding 200723_1126.skyd

13 Sep 2020 11:02:31,091 INFO : Expanding 200723_1126.sky.view

13 Sep 2020 11:02:31,092 INFO : Expanding 200723_1126.sky

13 Sep 2020 11:02:31,100 WARN : The version of this Skyline document is 20.14. This is newer than the highest supported version 4.1

13 Sep 2020 11:02:31,111 INFO : 10% Done

13 Sep 2020 11:02:31,315 INFO : Inserting sp|P0DTC9|NCAP_SARS2

13 Sep 2020 11:02:31,333 INFO : 38% Done

13 Sep 2020 11:02:31,753 INFO : 66% Done

13 Sep 2020 11:02:32,131 DEBUG: Total peptides inserted: 2

13 Sep 2020 11:02:32,142 INFO : Inserting sp|P60709|ACTB_HUMAN

13 Sep 2020 11:02:32,151 INFO : 80% Done

13 Sep 2020 11:02:32,286 DEBUG: Total peptides inserted: 1

13 Sep 2020 11:02:32,286 INFO : Done parsing Skyline document.

13 Sep 2020 11:02:32,294 INFO : No group comparisons found.

13 Sep 2020 11:02:32,295 INFO : Calculating calibration curves

13 Sep 2020 11:02:32,296 DEBUG: Calculating calibration curve for sp|P60709|ACTB_HUMAN, 1 of 2

13 Sep 2020 11:02:32,336 INFO : 89% Done

13 Sep 2020 11:02:32,336 DEBUG: Calculating calibration curve for sp|P0DTC9|NCAP_SARS2, 2 of 2

13 Sep 2020 11:02:32,454 INFO : 98% Done

13 Sep 2020 11:02:32,456 INFO : Done calculating calibration curves.

13 Sep 2020 11:02:32,459 INFO : Creating and populating temp tables for Proportion values

13 Sep 2020 11:02:32,505 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

13 Sep 2020 11:02:32,575 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

13 Sep 2020 11:02:32,595 INFO : Cleaning up temp tables

13 Sep 2020 11:02:33,047 INFO : Completed import of Skyline document from 200723_1126_2020-09-10_18-58-38.sky.zip

13 Sep 2020 11:02:33,055 INFO : 100% Done

13 Sep 2020 11:02:33,068 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91819/200723_1126_2020-09-10_18-58-38.sky.zip into the system

13 Sep 2020 11:02:33,068 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91818/200722_1408_2020-09-10_18-57-32/200722_1408.skyd into the system

13 Sep 2020 11:02:33,069 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91818/200722_1408_2020-09-10_18-57-32/200722_1408.skyd into the system

13 Sep 2020 11:02:33,070 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91818/200722_1408_2020-09-10_18-57-32.sky.zip into the system

13 Sep 2020 11:02:33,074 INFO : Starting import from 200722_1408_2020-09-10_18-57-32.sky.zip

13 Sep 2020 11:02:33,082 INFO : Starting to import Skyline document from 200722_1408_2020-09-10_18-57-32.sky.zip

13 Sep 2020 11:02:33,084 INFO : Expanding LIB_SARS_CoV_2.blib

13 Sep 2020 11:02:33,090 INFO : Expanding 200722_1408.skyd

13 Sep 2020 11:02:33,100 INFO : Expanding 200722_1408.sky.view

13 Sep 2020 11:02:33,100 INFO : Expanding 200722_1408.sky

13 Sep 2020 11:02:33,109 WARN : The version of this Skyline document is 20.14. This is newer than the highest supported version 4.1

13 Sep 2020 11:02:33,118 INFO : 10% Done

13 Sep 2020 11:02:33,288 INFO : Inserting sp|P0DTC9|NCAP_SARS2

13 Sep 2020 11:02:33,304 INFO : 38% Done

13 Sep 2020 11:02:33,649 INFO : 66% Done

13 Sep 2020 11:02:34,021 DEBUG: Total peptides inserted: 2

13 Sep 2020 11:02:34,031 INFO : Inserting sp|P60709|ACTB_HUMAN

13 Sep 2020 11:02:34,042 INFO : 80% Done

13 Sep 2020 11:02:34,158 DEBUG: Total peptides inserted: 1

13 Sep 2020 11:02:34,158 INFO : Done parsing Skyline document.

13 Sep 2020 11:02:34,167 INFO : No group comparisons found.

13 Sep 2020 11:02:34,167 INFO : Calculating calibration curves

13 Sep 2020 11:02:34,168 DEBUG: Calculating calibration curve for sp|P60709|ACTB_HUMAN, 1 of 2

13 Sep 2020 11:02:34,206 INFO : 89% Done

13 Sep 2020 11:02:34,206 DEBUG: Calculating calibration curve for sp|P0DTC9|NCAP_SARS2, 2 of 2

13 Sep 2020 11:02:34,318 INFO : 98% Done

13 Sep 2020 11:02:34,322 INFO : Done calculating calibration curves.

13 Sep 2020 11:02:34,324 INFO : Creating and populating temp tables for Proportion values

13 Sep 2020 11:02:34,363 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

13 Sep 2020 11:02:34,431 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

13 Sep 2020 11:02:34,466 INFO : Cleaning up temp tables

13 Sep 2020 11:02:34,923 INFO : Completed import of Skyline document from 200722_1408_2020-09-10_18-57-32.sky.zip

13 Sep 2020 11:02:34,931 INFO : 100% Done

13 Sep 2020 11:02:34,943 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91818/200722_1408_2020-09-10_18-57-32.sky.zip into the system

13 Sep 2020 11:02:34,943 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91817/200721_1119_2020-09-10_18-56-20/200721_1119.skyd into the system

13 Sep 2020 11:02:34,944 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91817/200721_1119_2020-09-10_18-56-20/200721_1119.skyd into the system

13 Sep 2020 11:02:34,944 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91817/200721_1119_2020-09-10_18-56-20.sky.zip into the system

13 Sep 2020 11:02:34,947 INFO : Starting import from 200721_1119_2020-09-10_18-56-20.sky.zip

13 Sep 2020 11:02:34,954 INFO : Starting to import Skyline document from 200721_1119_2020-09-10_18-56-20.sky.zip

13 Sep 2020 11:02:34,955 INFO : Expanding LIB_SARS_CoV_2.blib

13 Sep 2020 11:02:34,960 INFO : Expanding 200721_1119.skyd

13 Sep 2020 11:02:34,971 INFO : Expanding 200721_1119.sky.view

13 Sep 2020 11:02:34,972 INFO : Expanding 200721_1119.sky

13 Sep 2020 11:02:34,980 WARN : The version of this Skyline document is 20.14. This is newer than the highest supported version 4.1

13 Sep 2020 11:02:34,990 INFO : 10% Done

13 Sep 2020 11:02:35,188 INFO : Inserting sp|P0DTC9|NCAP_SARS2

13 Sep 2020 11:02:35,206 INFO : 38% Done

13 Sep 2020 11:02:35,717 INFO : 66% Done

13 Sep 2020 11:02:36,120 DEBUG: Total peptides inserted: 2

13 Sep 2020 11:02:36,130 INFO : Inserting sp|P60709|ACTB_HUMAN

13 Sep 2020 11:02:36,139 INFO : 80% Done

13 Sep 2020 11:02:36,275 DEBUG: Total peptides inserted: 1

13 Sep 2020 11:02:36,275 INFO : Done parsing Skyline document.

13 Sep 2020 11:02:36,284 INFO : No group comparisons found.

13 Sep 2020 11:02:36,284 INFO : Calculating calibration curves

13 Sep 2020 11:02:36,286 DEBUG: Calculating calibration curve for sp|P60709|ACTB_HUMAN, 1 of 2

13 Sep 2020 11:02:36,324 INFO : 89% Done

13 Sep 2020 11:02:36,324 DEBUG: Calculating calibration curve for sp|P0DTC9|NCAP_SARS2, 2 of 2

13 Sep 2020 11:02:36,441 INFO : 98% Done

13 Sep 2020 11:02:36,444 INFO : Done calculating calibration curves.

13 Sep 2020 11:02:36,446 INFO : Creating and populating temp tables for Proportion values

13 Sep 2020 11:02:36,475 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

13 Sep 2020 11:02:36,563 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

13 Sep 2020 11:02:36,584 INFO : Cleaning up temp tables

13 Sep 2020 11:02:37,045 INFO : Completed import of Skyline document from 200721_1119_2020-09-10_18-56-20.sky.zip

13 Sep 2020 11:02:37,053 INFO : 100% Done

13 Sep 2020 11:02:37,065 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91817/200721_1119_2020-09-10_18-56-20.sky.zip into the system

13 Sep 2020 11:02:37,065 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91816/200720_0845_2020-09-10_18-55-02/200720_0845.skyd into the system

13 Sep 2020 11:02:37,067 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91816/200720_0845_2020-09-10_18-55-02/200720_0845.skyd into the system

13 Sep 2020 11:02:37,067 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91816/200720_0845_2020-09-10_18-55-02.sky.zip into the system

13 Sep 2020 11:02:37,071 INFO : Starting import from 200720_0845_2020-09-10_18-55-02.sky.zip

13 Sep 2020 11:02:37,078 INFO : Starting to import Skyline document from 200720_0845_2020-09-10_18-55-02.sky.zip

13 Sep 2020 11:02:37,079 INFO : Expanding LIB_SARS_CoV_2.blib

13 Sep 2020 11:02:37,084 INFO : Expanding 200720_0845.skyd

13 Sep 2020 11:02:37,095 INFO : Expanding 200720_0845.sky.view

13 Sep 2020 11:02:37,096 INFO : Expanding 200720_0845.sky

13 Sep 2020 11:02:37,104 WARN : The version of this Skyline document is 20.14. This is newer than the highest supported version 4.1

13 Sep 2020 11:02:37,114 INFO : 10% Done

13 Sep 2020 11:02:37,326 INFO : Inserting sp|P0DTC9|NCAP_SARS2

13 Sep 2020 11:02:37,343 INFO : 39% Done

13 Sep 2020 11:02:37,802 INFO : 69% Done

13 Sep 2020 11:02:38,183 DEBUG: Total peptides inserted: 2

13 Sep 2020 11:02:38,193 INFO : Inserting sp|P60709|ACTB_HUMAN

13 Sep 2020 11:02:38,201 INFO : 80% Done

13 Sep 2020 11:02:38,490 DEBUG: Total peptides inserted: 1

13 Sep 2020 11:02:38,491 INFO : Done parsing Skyline document.

13 Sep 2020 11:02:38,499 INFO : No group comparisons found.

13 Sep 2020 11:02:38,499 INFO : Calculating calibration curves

13 Sep 2020 11:02:38,501 DEBUG: Calculating calibration curve for sp|P60709|ACTB_HUMAN, 1 of 2

13 Sep 2020 11:02:38,535 INFO : 89% Done

13 Sep 2020 11:02:38,535 DEBUG: Calculating calibration curve for sp|P0DTC9|NCAP_SARS2, 2 of 2

13 Sep 2020 11:02:38,683 INFO : 98% Done

13 Sep 2020 11:02:38,738 INFO : Done calculating calibration curves.

13 Sep 2020 11:02:38,740 INFO : Creating and populating temp tables for Proportion values

13 Sep 2020 11:02:38,769 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

13 Sep 2020 11:02:38,845 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

13 Sep 2020 11:02:38,866 INFO : Cleaning up temp tables

13 Sep 2020 11:02:39,333 INFO : Completed import of Skyline document from 200720_0845_2020-09-10_18-55-02.sky.zip

13 Sep 2020 11:02:39,341 INFO : 100% Done

13 Sep 2020 11:02:39,353 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91816/200720_0845_2020-09-10_18-55-02.sky.zip into the system

13 Sep 2020 11:02:39,534 INFO : Done importing xar

13 Sep 2020 11:02:39,541 INFO : Loading pages and webpart properties

13 Sep 2020 11:02:39,765 INFO : Done importing pages and webpart properties

13 Sep 2020 11:02:39,765 INFO : Done importing folder archive for Tier_1

13 Sep 2020 11:02:39,943 INFO : New container created with inherited permissions for Tier_3

13 Sep 2020 11:02:39,943 INFO : Loading folder archive for Tier_3

13 Sep 2020 11:02:39,949 INFO : Loading folder properties (folder type, settings and active modules)

13 Sep 2020 11:02:40,138 INFO : Done importing folder properties (folder type, settings and active modules)

13 Sep 2020 11:02:40,144 INFO : Loading etl definitions

13 Sep 2020 11:02:40,149 INFO : Loading wikis

13 Sep 2020 11:02:40,177 INFO : 1 wiki imported

13 Sep 2020 11:02:40,178 INFO : Done importing wikis

13 Sep 2020 11:02:40,179 INFO : Starting to copy files

13 Sep 2020 11:02:58,930 INFO : Copied 877 files

13 Sep 2020 11:02:58,930 INFO : Ensuring exp.data rows exist for imported files

13 Sep 2020 11:03:11,087 INFO : Loading xar

13 Sep 2020 11:03:11,323 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-7598:TargetedMS.ImportSkyZip'

13 Sep 2020 11:03:11,330 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-7598:TargetedMS.ImportSkyZip.Core'

13 Sep 2020 11:03:11,338 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-7598:TargetedMS.ImportSkyZip.Output'

13 Sep 2020 11:03:11,338 DEBUG: Protocol import complete

13 Sep 2020 11:03:11,374 DEBUG: Protocol action set import complete

13 Sep 2020 11:03:11,396 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7598:TargetedMS.ImportSkyZip'

13 Sep 2020 11:03:11,434 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-7598:0f6f8387-d5dd-1038-9455-3013bb9b8170'

13 Sep 2020 11:03:11,448 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-7598:0f6f8029-d5dd-1038-9455-3013bb9b8170'

13 Sep 2020 11:03:11,449 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7598:TargetedMS.ImportSkyZip.Core'

13 Sep 2020 11:03:11,457 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-7598:TargetedMS.ImportSkyZip.Output'

13 Sep 2020 11:03:11,459 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-7598:0f6f8429-d5dd-1038-9455-3013bb9b8170'

13 Sep 2020 11:03:11,462 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_3/xar/experiments_and_runs.xar.exploded/Run91815/Tier3_2020-09-10_18-48-08/Tier3.skyd into the system

13 Sep 2020 11:03:11,464 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_3/xar/experiments_and_runs.xar.exploded/Run91815/Tier3_2020-09-10_18-48-08/Tier3.skyd into the system

13 Sep 2020 11:03:11,464 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_3/xar/experiments_and_runs.xar.exploded/Run91815/Tier3_2020-09-10_18-48-08.sky.zip into the system

13 Sep 2020 11:03:11,467 INFO : Starting import from Tier3_2020-09-10_18-48-08.sky.zip

13 Sep 2020 11:03:11,477 INFO : Starting to import Skyline document from Tier3_2020-09-10_18-48-08.sky.zip

13 Sep 2020 11:03:11,482 INFO : Expanding LIB_SARS_CoV_2.blib

13 Sep 2020 11:03:11,487 INFO : Expanding Tier3.skyd

13 Sep 2020 11:03:11,608 INFO : Expanding Tier3.sky.view

13 Sep 2020 11:03:11,609 INFO : Expanding Tier3.sky

13 Sep 2020 11:03:11,658 WARN : The version of this Skyline document is 20.14. This is newer than the highest supported version 4.1

13 Sep 2020 11:03:11,706 INFO : 14% Done

13 Sep 2020 11:03:14,832 INFO : Inserting sp|P0DTC9|NCAP_SARS2

13 Sep 2020 11:03:14,902 INFO : 36% Done

13 Sep 2020 11:03:17,508 INFO : 58% Done

13 Sep 2020 11:03:19,893 DEBUG: Total peptides inserted: 2

13 Sep 2020 11:03:19,903 INFO : Inserting sp|P10645|CMGA_HUMAN

13 Sep 2020 11:03:19,968 INFO : 80% Done

13 Sep 2020 11:03:22,566 DEBUG: Total peptides inserted: 1

13 Sep 2020 11:03:22,566 INFO : Done parsing Skyline document.

13 Sep 2020 11:03:22,635 INFO : No group comparisons found.

13 Sep 2020 11:03:22,635 INFO : Calculating calibration curves

13 Sep 2020 11:03:22,637 DEBUG: Calculating calibration curve for sp|P10645|CMGA_HUMAN, 1 of 2

13 Sep 2020 11:03:22,936 INFO : 89% Done

13 Sep 2020 11:03:22,937 DEBUG: Calculating calibration curve for sp|P0DTC9|NCAP_SARS2, 2 of 2

13 Sep 2020 11:03:23,578 INFO : 98% Done

13 Sep 2020 11:03:23,583 INFO : Done calculating calibration curves.

13 Sep 2020 11:03:23,586 INFO : Creating and populating temp tables for Proportion values

13 Sep 2020 11:03:23,774 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

13 Sep 2020 11:03:24,472 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

13 Sep 2020 11:03:24,869 INFO : Cleaning up temp tables

13 Sep 2020 11:03:25,348 INFO : Completed import of Skyline document from Tier3_2020-09-10_18-48-08.sky.zip

13 Sep 2020 11:03:25,357 INFO : 100% Done

13 Sep 2020 11:03:25,369 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_3/xar/experiments_and_runs.xar.exploded/Run91815/Tier3_2020-09-10_18-48-08.sky.zip into the system

13 Sep 2020 11:03:25,389 INFO : Done importing xar

13 Sep 2020 11:03:25,394 INFO : Loading pages and webpart properties

13 Sep 2020 11:03:25,617 INFO : Done importing pages and webpart properties

13 Sep 2020 11:03:25,617 INFO : Done importing folder archive for Tier_3

13 Sep 2020 11:03:25,617 INFO : Done importing subfolders and container tabs

13 Sep 2020 11:03:25,617 INFO : 

13 Sep 2020 11:03:25,617 INFO : Experiment import completed successfully.

13 Sep 2020 11:03:25,618 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'

13 Sep 2020 11:03:25,730 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'

13 Sep 2020 11:03:25,730 INFO : 

13 Sep 2020 11:03:25,730 INFO : Finishing up experiment copy.

13 Sep 2020 11:03:25,740 INFO : Adding runs imported in subfolders.

13 Sep 2020 11:03:25,884 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.

13 Sep 2020 11:03:25,890 INFO : Copying ProteomeXchange ID from the previous copy of the data.

13 Sep 2020 11:03:26,153 INFO : Updating access URL to point to the new copy of the data.

13 Sep 2020 11:03:26,314 INFO : Setting the 'copied' timestamp and journalExperimentId on the JournalExperiment table.

13 Sep 2020 11:03:26,339 INFO : Removing copy permissions given to journal.

13 Sep 2020 11:03:26,455 INFO : Adding read permissions to all users that are folder admins in the source container.

13 Sep 2020 11:03:26,457 INFO : Adding read permissions to all users that had read access to previous copy.

13 Sep 2020 11:03:26,475 INFO : Setting the TargetedMS folder type to 'Experimental Data'

13 Sep 2020 11:03:26,554 INFO : Updating the 'Raw Data' tab configuration

13 Sep 2020 11:03:26,568 INFO : Updating dataFileUrls for run PRM_9min_2020-09-11_15-50-27.sky.zip; targetedms run ID 94036

13 Sep 2020 11:03:26,569 INFO : Updating dataFileUrl...

13 Sep 2020 11:03:26,569 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/PRM/xar/experiments_and_runs.xar.exploded/Run91883/PRM_9min_2020-09-11_15-50-27/PRM_9min.skyd

13 Sep 2020 11:03:26,569 INFO : to: file:///data/labkey/files/Panorama%20Public/2020/Group%20Fleury%20-%20Fleury_SARS-CoV-2/PRM/@files/PRM_9min_2020-09-11_15-50-27/PRM_9min.skyd

13 Sep 2020 11:03:26,575 INFO : Updating dataFileUrl...

13 Sep 2020 11:03:26,575 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/PRM/xar/experiments_and_runs.xar.exploded/Run91883/PRM_9min_2020-09-11_15-50-27.sky.zip

13 Sep 2020 11:03:26,575 INFO : to: file:///data/labkey/files/Panorama%20Public/2020/Group%20Fleury%20-%20Fleury_SARS-CoV-2/PRM/@files/PRM_9min_2020-09-11_15-50-27.sky.zip

13 Sep 2020 11:03:26,596 INFO : Updating dataFileUrls for run PRM_60min_2020-09-11_15-51-41.sky.zip; targetedms run ID 94035

13 Sep 2020 11:03:26,597 INFO : Updating dataFileUrl...

13 Sep 2020 11:03:26,597 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/PRM/xar/experiments_and_runs.xar.exploded/Run91884/PRM_60min_2020-09-11_15-51-41.sky.zip

13 Sep 2020 11:03:26,597 INFO : to: file:///data/labkey/files/Panorama%20Public/2020/Group%20Fleury%20-%20Fleury_SARS-CoV-2/PRM/@files/PRM_60min_2020-09-11_15-51-41.sky.zip

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13 Sep 2020 11:03:26,840 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_1/xar/experiments_and_runs.xar.exploded/Run91830/200821_1358_2020-09-10_19-22-30.sky.zip

13 Sep 2020 11:03:26,841 INFO : to: file:///data/labkey/files/Panorama%20Public/2020/Group%20Fleury%20-%20Fleury_SARS-CoV-2/Tier_1/@files/200821_1358_2020-09-10_19-22-30.sky.zip

13 Sep 2020 11:03:26,888 INFO : Updating dataFileUrls for run Tier3_2020-09-10_18-48-08.sky.zip; targetedms run ID 94051

13 Sep 2020 11:03:26,889 INFO : Updating dataFileUrl...

13 Sep 2020 11:03:26,889 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_3/xar/experiments_and_runs.xar.exploded/Run91815/Tier3_2020-09-10_18-48-08/Tier3.skyd

13 Sep 2020 11:03:26,890 INFO : to: file:///data/labkey/files/Panorama%20Public/2020/Group%20Fleury%20-%20Fleury_SARS-CoV-2/Tier_3/@files/Tier3_2020-09-10_18-48-08/Tier3.skyd

13 Sep 2020 11:03:26,894 INFO : Updating dataFileUrl...

13 Sep 2020 11:03:26,894 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/Group%20Fleury%20-%20Fleury_SARS-CoV-2_246093a3-d817-1038-9455-3013bb9b8170/_temp__2020-09-13_10-51-42/export/subfolders/Tier_3/xar/experiments_and_runs.xar.exploded/Run91815/Tier3_2020-09-10_18-48-08.sky.zip

13 Sep 2020 11:03:26,894 INFO : to: file:///data/labkey/files/Panorama%20Public/2020/Group%20Fleury%20-%20Fleury_SARS-CoV-2/Tier_3/@files/Tier3_2020-09-10_18-48-08.sky.zip

13 Sep 2020 11:03:26,907 INFO : Creating a reviewer account.

13 Sep 2020 11:03:27,732 INFO : Created reviewer with email: User panorama+reviewer3@proteinms.net

13 Sep 2020 11:03:27,753 INFO : Hiding the Data Pipeline tab.

13 Sep 2020 11:03:28,884 INFO : Emailing submitter.

13 Sep 2020 11:03:29,887 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'