Copying experiment: Multiplexed MRM-based protein quantification of putative prognostic biomarkers for chronic kidney disease progression in plasma.

BRFAA - Multiplexed MRM-based protein quantification of putative prognostic biomarkers for chronic kidney disease progression in plasma

Job Status

Created: 2020-06-11 15:11:21
Modified: 2020-06-11 15:47:40
Email: kaipot@uw.edu
Status: COMPLETE
Info:
Description: Copying experiment: Multiplexed MRM-based protein quantification of putative prognostic biomarkers for chronic kidney disease progression in plasma.
File Path: /data/labkey/files/Panorama Public/2020/BRFAA - Multiplexed MRM-based protein quantification of putative prognostic biomarkers for chronic kidney disease progression in plasma/@files/Experiment_988.log
Files: Experiment_988.log

Log File


11 Jun 2020 15:11:21,065 INFO : Copying experiment "Multiplexed MRM-based protein quantification of putative prognostic biomarkers for chronic kidney disease progression in plasma." from folder /BRFAA - Vlahou Lab/Multiplexed MRM-based protein quantification of putative prognostic biomarkers for chronic kidney disease progression in plasma to /Panorama Public/2020/BRFAA - Multiplexed MRM-based protein quantification of putative prognostic biomarkers for chronic kidney disease progression in plasma
11 Jun 2020 15:11:21,065 INFO : =======================================
11 Jun 2020 15:11:21,246 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
11 Jun 2020 15:11:21,246 INFO :
11 Jun 2020 15:11:21,246 INFO : Exporting experiment.
11 Jun 2020 15:25:49,638 INFO :
11 Jun 2020 15:25:49,638 INFO : Experiment export completed successfully.
11 Jun 2020 15:25:49,639 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
11 Jun 2020 15:25:49,718 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
11 Jun 2020 15:25:49,718 INFO :
11 Jun 2020 15:25:49,718 INFO : Importing experiment.
11 Jun 2020 15:25:49,733 INFO : Loading folder properties (folder type, settings and active modules)
11 Jun 2020 15:25:50,143 INFO : Done importing folder properties (folder type, settings and active modules)
11 Jun 2020 15:25:50,151 INFO : Loading etl definitions
11 Jun 2020 15:25:50,158 INFO : Loading wikis
11 Jun 2020 15:25:50,162 INFO : 0 wikis imported
11 Jun 2020 15:25:50,162 INFO : Done importing wikis
11 Jun 2020 15:25:50,162 INFO : Starting to copy files
11 Jun 2020 15:28:00,528 INFO : 33 files copied, now copying humanreviewed_300516.protdb
11 Jun 2020 15:28:22,196 INFO : 38 files copied, now copying humanreviewed_300516.protdb
11 Jun 2020 15:28:44,082 INFO : 43 files copied, now copying humanreviewed_300516.protdb
11 Jun 2020 15:29:05,895 INFO : 48 files copied, now copying humanreviewed_300516.protdb
11 Jun 2020 15:29:27,710 INFO : 53 files copied, now copying humanreviewed_300516.protdb
11 Jun 2020 15:29:49,263 INFO : 58 files copied, now copying humanreviewed_300516.protdb
11 Jun 2020 15:30:10,989 INFO : 63 files copied, now copying humanreviewed_300516.protdb
11 Jun 2020 15:30:32,845 INFO : 68 files copied, now copying humanreviewed_300516.protdb
11 Jun 2020 15:30:54,497 INFO : 73 files copied, now copying humanreviewed_300516.protdb
11 Jun 2020 15:31:16,509 INFO : 78 files copied, now copying humanreviewed_300516.protdb
11 Jun 2020 15:31:38,265 INFO : 83 files copied, now copying humanreviewed_300516.protdb
11 Jun 2020 15:32:00,744 INFO : 88 files copied, now copying humanreviewed_300516.protdb
11 Jun 2020 15:32:22,862 INFO : Copied 93 files
11 Jun 2020 15:32:22,862 INFO : Ensuring exp.data rows exist for imported files
11 Jun 2020 15:32:24,629 INFO : Loading xar
11 Jun 2020 15:34:13,926 INFO : Starting import from SERPINF1b_2020-06-05_16-03-56.sky.zip
11 Jun 2020 15:34:13,935 INFO : Starting to import Skyline document from SERPINF1b_2020-06-05_16-03-56.sky.zip
11 Jun 2020 15:34:13,936 INFO : Expanding humanreviewed_300516.protdb
11 Jun 2020 15:34:15,650 INFO : Expanding human_consensus_final_true_lib.msp
11 Jun 2020 15:34:33,335 INFO : Expanding SERPINF1b.skyd
11 Jun 2020 15:34:33,337 INFO : Expanding SERPINF1b.sky.view
11 Jun 2020 15:34:33,338 INFO : Expanding SERPINF1b.sky
11 Jun 2020 15:34:33,341 WARN : The version of this Skyline document is 20.1. This is newer than the highest supported version 4.1
11 Jun 2020 15:34:33,342 INFO : 42% Done
11 Jun 2020 15:34:33,484 INFO : Inserting sp|P36955|PEDF_HUMAN
11 Jun 2020 15:34:33,536 INFO : 98% Done
11 Jun 2020 15:34:33,817 INFO : Done parsing Skyline document.
11 Jun 2020 15:34:33,820 INFO : Creating and populating temp tables for Proportion values
11 Jun 2020 15:34:33,868 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
11 Jun 2020 15:34:33,872 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
11 Jun 2020 15:34:33,874 INFO : Cleaning up temp tables
11 Jun 2020 15:34:34,421 INFO : Completed import of Skyline document from SERPINF1b_2020-06-05_16-03-56.sky.zip
11 Jun 2020 15:34:34,424 INFO : 100% Done
11 Jun 2020 15:34:34,440 INFO : Starting import from SERPINF1_2020-06-05_12-55-50.sky.zip
11 Jun 2020 15:34:34,447 INFO : Starting to import Skyline document from SERPINF1_2020-06-05_12-55-50.sky.zip
11 Jun 2020 15:34:34,456 INFO : Expanding humanreviewed_300516.protdb
11 Jun 2020 15:34:36,140 INFO : Expanding human_consensus_final_true_lib.msp
11 Jun 2020 15:34:53,427 INFO : Expanding SERPINF1.skyd
11 Jun 2020 15:34:53,520 INFO : Expanding SERPINF1.sky.view
11 Jun 2020 15:34:53,520 INFO : Expanding SERPINF1.sky
11 Jun 2020 15:34:53,524 WARN : The version of this Skyline document is 20.1. This is newer than the highest supported version 4.1
11 Jun 2020 15:34:53,528 INFO : 20% Done
11 Jun 2020 15:34:53,788 INFO : Inserting sp|P36955|PEDF_HUMAN
11 Jun 2020 15:34:53,795 INFO : 98% Done
11 Jun 2020 15:34:54,163 INFO : Done parsing Skyline document.
11 Jun 2020 15:34:54,164 INFO : Creating and populating temp tables for Proportion values
11 Jun 2020 15:34:54,200 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
11 Jun 2020 15:34:54,251 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
11 Jun 2020 15:34:54,256 INFO : Cleaning up temp tables
11 Jun 2020 15:34:54,541 INFO : Completed import of Skyline document from SERPINF1_2020-06-05_12-55-50.sky.zip
11 Jun 2020 15:34:54,542 INFO : 100% Done
11 Jun 2020 15:34:54,551 INFO : Starting import from LYZb_2020-06-04_18-12-30.sky.zip
11 Jun 2020 15:34:54,555 INFO : Starting to import Skyline document from LYZb_2020-06-04_18-12-30.sky.zip
11 Jun 2020 15:34:54,556 INFO : Expanding humanreviewed_300516.protdb
11 Jun 2020 15:34:55,835 INFO : Expanding human_consensus_final_true_lib.msp
11 Jun 2020 15:35:13,092 INFO : Expanding LYZb.skyd
11 Jun 2020 15:35:13,106 INFO : Expanding LYZb.sky.view
11 Jun 2020 15:35:13,107 INFO : Expanding LYZb.sky
11 Jun 2020 15:35:13,110 WARN : The version of this Skyline document is 20.1. This is newer than the highest supported version 4.1
11 Jun 2020 15:35:13,111 INFO : 33% Done
11 Jun 2020 15:35:13,490 INFO : Inserting sp|P61626|LYSC_HUMAN
11 Jun 2020 15:35:13,527 INFO : 98% Done
11 Jun 2020 15:35:13,680 INFO : Done parsing Skyline document.
11 Jun 2020 15:35:13,683 INFO : Creating and populating temp tables for Proportion values
11 Jun 2020 15:35:13,706 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
11 Jun 2020 15:35:13,711 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
11 Jun 2020 15:35:13,715 INFO : Cleaning up temp tables
11 Jun 2020 15:35:14,854 INFO : Completed import of Skyline document from LYZb_2020-06-04_18-12-30.sky.zip
11 Jun 2020 15:35:14,856 INFO : 100% Done
11 Jun 2020 15:35:14,872 INFO : Starting import from LYZ_2020-06-04_15-26-23.sky.zip
11 Jun 2020 15:35:14,879 INFO : Starting to import Skyline document from LYZ_2020-06-04_15-26-23.sky.zip
11 Jun 2020 15:35:14,887 INFO : Expanding humanreviewed_300516.protdb
11 Jun 2020 15:35:16,595 INFO : Expanding human_consensus_final_true_lib.msp
11 Jun 2020 15:35:33,692 INFO : Expanding LYZ.skyd
11 Jun 2020 15:35:33,771 INFO : Expanding LYZ.sky.view
11 Jun 2020 15:35:33,771 INFO : Expanding LYZ.sky
11 Jun 2020 15:35:33,774 WARN : The version of this Skyline document is 20.1. This is newer than the highest supported version 4.1
11 Jun 2020 15:35:33,776 INFO : 24% Done
11 Jun 2020 15:35:33,996 INFO : 32% Done
11 Jun 2020 15:35:34,014 INFO : Inserting sp|P61626|LYSC_HUMAN
11 Jun 2020 15:35:34,018 INFO : 98% Done
11 Jun 2020 15:35:34,307 INFO : Done parsing Skyline document.
11 Jun 2020 15:35:34,308 INFO : Creating and populating temp tables for Proportion values
11 Jun 2020 15:35:34,331 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
11 Jun 2020 15:35:34,357 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
11 Jun 2020 15:35:34,367 INFO : Cleaning up temp tables
11 Jun 2020 15:35:34,857 INFO : Completed import of Skyline document from LYZ_2020-06-04_15-26-23.sky.zip
11 Jun 2020 15:35:34,859 INFO : 100% Done
11 Jun 2020 15:35:34,875 INFO : Starting import from IGHA1c_2020-06-04_12-45-14.sky.zip
11 Jun 2020 15:35:34,882 INFO : Starting to import Skyline document from IGHA1c_2020-06-04_12-45-14.sky.zip
11 Jun 2020 15:35:34,882 INFO : Expanding humanreviewed_300516.protdb
11 Jun 2020 15:35:36,842 INFO : Expanding human_consensus_final_true_lib.msp
11 Jun 2020 15:35:56,320 INFO : Expanding IGHA1c.skyd
11 Jun 2020 15:35:56,323 INFO : Expanding IGHA1c.sky.view
11 Jun 2020 15:35:56,324 INFO : Expanding IGHA1c.sky
11 Jun 2020 15:35:56,327 WARN : The version of this Skyline document is 20.1. This is newer than the highest supported version 4.1
11 Jun 2020 15:35:56,328 INFO : 33% Done
11 Jun 2020 15:35:56,424 INFO : Inserting sp|P01876|IGHA1_HUMAN
11 Jun 2020 15:35:56,469 INFO : 98% Done
11 Jun 2020 15:35:56,577 INFO : Done parsing Skyline document.
11 Jun 2020 15:35:56,578 INFO : Creating and populating temp tables for Proportion values
11 Jun 2020 15:35:56,589 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
11 Jun 2020 15:35:56,590 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
11 Jun 2020 15:35:56,591 INFO : Cleaning up temp tables
11 Jun 2020 15:35:56,958 INFO : Completed import of Skyline document from IGHA1c_2020-06-04_12-45-14.sky.zip
11 Jun 2020 15:35:56,959 INFO : 100% Done
11 Jun 2020 15:35:56,967 INFO : Starting import from IGHA1b_2020-06-03_16-47-13.sky.zip
11 Jun 2020 15:35:56,971 INFO : Starting to import Skyline document from IGHA1b_2020-06-03_16-47-13.sky.zip
11 Jun 2020 15:35:56,979 INFO : Expanding humanreviewed_300516.protdb
11 Jun 2020 15:35:58,637 INFO : Expanding human_consensus_final_true_lib.msp
11 Jun 2020 15:36:23,118 INFO : Expanding IGHA1b.skyd
11 Jun 2020 15:36:23,120 INFO : Expanding IGHA1b.sky.view
11 Jun 2020 15:36:23,120 INFO : Expanding IGHA1b.sky
11 Jun 2020 15:36:23,123 WARN : The version of this Skyline document is 20.1. This is newer than the highest supported version 4.1
11 Jun 2020 15:36:23,124 INFO : 42% Done
11 Jun 2020 15:36:23,140 INFO : Inserting sp|P01876|IGHA1_HUMAN
11 Jun 2020 15:36:23,143 INFO : 98% Done
11 Jun 2020 15:36:23,210 INFO : Done parsing Skyline document.
11 Jun 2020 15:36:23,211 INFO : Creating and populating temp tables for Proportion values
11 Jun 2020 15:36:23,221 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
11 Jun 2020 15:36:23,222 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
11 Jun 2020 15:36:23,222 INFO : Cleaning up temp tables
11 Jun 2020 15:36:23,662 INFO : Completed import of Skyline document from IGHA1b_2020-06-03_16-47-13.sky.zip
11 Jun 2020 15:36:23,664 INFO : 100% Done
11 Jun 2020 15:36:23,681 INFO : Starting import from IGHA1_2020-06-03_14-07-57.sky.zip
11 Jun 2020 15:36:23,687 INFO : Starting to import Skyline document from IGHA1_2020-06-03_14-07-57.sky.zip
11 Jun 2020 15:36:23,705 INFO : Expanding humanreviewed_300516.protdb
11 Jun 2020 15:36:25,643 INFO : Expanding human_consensus_final_true_lib.msp
11 Jun 2020 15:36:49,457 INFO : Expanding IGHA1.skyd
11 Jun 2020 15:36:49,894 INFO : Expanding IGHA1.sky.view
11 Jun 2020 15:36:49,895 INFO : Expanding IGHA1.sky
11 Jun 2020 15:36:49,903 WARN : The version of this Skyline document is 20.1. This is newer than the highest supported version 4.1
11 Jun 2020 15:36:49,908 INFO : 14% Done
11 Jun 2020 15:36:50,494 INFO : Inserting sp|P01876|IGHA1_HUMAN
11 Jun 2020 15:36:50,518 INFO : 98% Done
11 Jun 2020 15:36:51,654 INFO : Done parsing Skyline document.
11 Jun 2020 15:36:51,656 INFO : Creating and populating temp tables for Proportion values
11 Jun 2020 15:36:51,681 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
11 Jun 2020 15:36:51,766 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
11 Jun 2020 15:36:51,801 INFO : Cleaning up temp tables
11 Jun 2020 15:36:52,212 INFO : Completed import of Skyline document from IGHA1_2020-06-03_14-07-57.sky.zip
11 Jun 2020 15:36:52,213 INFO : 100% Done
11 Jun 2020 15:36:52,227 INFO : Starting import from HBB_2020-06-03_11-25-07.sky.zip
11 Jun 2020 15:36:52,233 INFO : Starting to import Skyline document from HBB_2020-06-03_11-25-07.sky.zip
11 Jun 2020 15:36:52,240 INFO : Expanding humanreviewed_300516.protdb
11 Jun 2020 15:36:54,049 INFO : Expanding human_consensus_final_true_lib.msp
11 Jun 2020 15:37:16,285 INFO : Expanding HBB.skyd
11 Jun 2020 15:37:16,390 INFO : Expanding HBB.sky.view
11 Jun 2020 15:37:16,390 INFO : Expanding HBB.sky
11 Jun 2020 15:37:16,394 WARN : The version of this Skyline document is 20.1. This is newer than the highest supported version 4.1
11 Jun 2020 15:37:16,396 INFO : 21% Done
11 Jun 2020 15:37:16,793 INFO : Inserting sp|P68871|HBB_HUMAN
11 Jun 2020 15:37:16,851 INFO : 98% Done
11 Jun 2020 15:37:17,687 INFO : Done parsing Skyline document.
11 Jun 2020 15:37:17,689 INFO : Creating and populating temp tables for Proportion values
11 Jun 2020 15:37:17,906 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
11 Jun 2020 15:37:18,028 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
11 Jun 2020 15:37:18,040 INFO : Cleaning up temp tables
11 Jun 2020 15:37:18,524 INFO : Completed import of Skyline document from HBB_2020-06-03_11-25-07.sky.zip
11 Jun 2020 15:37:18,526 INFO : 100% Done
11 Jun 2020 15:37:18,543 INFO : Starting import from B2M_2020-06-02_17-56-29.sky.zip
11 Jun 2020 15:37:18,550 INFO : Starting to import Skyline document from B2M_2020-06-02_17-56-29.sky.zip
11 Jun 2020 15:37:18,577 INFO : Expanding humanreviewed_300516.protdb
11 Jun 2020 15:37:20,212 INFO : Expanding human_consensus_final_true_lib.msp
11 Jun 2020 15:37:42,735 INFO : Expanding B2M.skyd
11 Jun 2020 15:37:42,820 INFO : Expanding B2M.sky.view
11 Jun 2020 15:37:42,821 INFO : Expanding B2M.sky
11 Jun 2020 15:37:42,825 WARN : The version of this Skyline document is 20.1. This is newer than the highest supported version 4.1
11 Jun 2020 15:37:42,827 INFO : 20% Done
11 Jun 2020 15:37:43,195 INFO : Inserting sp|P61769|B2MG_HUMAN
11 Jun 2020 15:37:43,252 INFO : 98% Done
11 Jun 2020 15:37:43,979 INFO : Done parsing Skyline document.
11 Jun 2020 15:37:43,981 INFO : Creating and populating temp tables for Proportion values
11 Jun 2020 15:37:44,018 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
11 Jun 2020 15:37:44,045 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
11 Jun 2020 15:37:44,056 INFO : Cleaning up temp tables
11 Jun 2020 15:37:44,516 INFO : Completed import of Skyline document from B2M_2020-06-02_17-56-29.sky.zip
11 Jun 2020 15:37:44,518 INFO : 100% Done
11 Jun 2020 15:37:44,533 INFO : Starting import from B2Mb_2020-06-02_15-19-17.sky.zip
11 Jun 2020 15:37:44,540 INFO : Starting to import Skyline document from B2Mb_2020-06-02_15-19-17.sky.zip
11 Jun 2020 15:37:44,559 INFO : Expanding humanreviewed_300516.protdb
11 Jun 2020 15:37:46,850 INFO : Expanding human_consensus_final_true_lib.msp
11 Jun 2020 15:38:09,077 INFO : Expanding B2Mb.skyd
11 Jun 2020 15:38:09,088 INFO : Expanding B2Mb.sky.view
11 Jun 2020 15:38:09,088 INFO : Expanding B2Mb.sky
11 Jun 2020 15:38:09,093 WARN : The version of this Skyline document is 20.1. This is newer than the highest supported version 4.1
11 Jun 2020 15:38:09,095 INFO : 28% Done
11 Jun 2020 15:38:09,189 INFO : Inserting sp|P61769|B2MG_HUMAN
11 Jun 2020 15:38:09,195 INFO : 98% Done
11 Jun 2020 15:38:09,316 INFO : Done parsing Skyline document.
11 Jun 2020 15:38:09,318 INFO : Creating and populating temp tables for Proportion values
11 Jun 2020 15:38:09,373 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
11 Jun 2020 15:38:09,378 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
11 Jun 2020 15:38:09,381 INFO : Cleaning up temp tables
11 Jun 2020 15:38:09,681 INFO : Completed import of Skyline document from B2Mb_2020-06-02_15-19-17.sky.zip
11 Jun 2020 15:38:09,683 INFO : 100% Done
11 Jun 2020 15:38:09,708 INFO : Starting import from AMBPc_2020-06-02_12-38-26.sky.zip
11 Jun 2020 15:38:09,713 INFO : Starting to import Skyline document from AMBPc_2020-06-02_12-38-26.sky.zip
11 Jun 2020 15:38:09,725 INFO : Expanding humanreviewed_300516.protdb
11 Jun 2020 15:38:11,243 INFO : Expanding human_consensus_final_true_lib.msp
11 Jun 2020 15:38:36,998 INFO : Expanding AMBPc.skyd
11 Jun 2020 15:38:37,000 INFO : Expanding AMBPc.sky.view
11 Jun 2020 15:38:37,001 INFO : Expanding AMBPc.sky
11 Jun 2020 15:38:37,005 WARN : The version of this Skyline document is 20.1. This is newer than the highest supported version 4.1
11 Jun 2020 15:38:37,006 INFO : 41% Done
11 Jun 2020 15:38:37,112 INFO : Inserting sp|P02760|AMBP_HUMAN
11 Jun 2020 15:38:37,145 INFO : 98% Done
11 Jun 2020 15:38:37,227 INFO : Done parsing Skyline document.
11 Jun 2020 15:38:37,228 INFO : Creating and populating temp tables for Proportion values
11 Jun 2020 15:38:37,238 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
11 Jun 2020 15:38:37,239 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
11 Jun 2020 15:38:37,240 INFO : Cleaning up temp tables
11 Jun 2020 15:38:37,663 INFO : Completed import of Skyline document from AMBPc_2020-06-02_12-38-26.sky.zip
11 Jun 2020 15:38:37,665 INFO : 100% Done
11 Jun 2020 15:38:37,725 INFO : Starting import from AMBP_2020-06-01_17-29-42.sky.zip
11 Jun 2020 15:38:37,732 INFO : Starting to import Skyline document from AMBP_2020-06-01_17-29-42.sky.zip
11 Jun 2020 15:38:37,741 INFO : Expanding humanreviewed_300516.protdb
11 Jun 2020 15:38:39,271 INFO : Expanding human_consensus_final_true_lib.msp
11 Jun 2020 15:39:02,379 INFO : Expanding AMBP.skyd
11 Jun 2020 15:39:02,604 INFO : Expanding AMBP.sky.view
11 Jun 2020 15:39:02,605 INFO : Expanding AMBP.sky
11 Jun 2020 15:39:02,612 WARN : The version of this Skyline document is 20.1. This is newer than the highest supported version 4.1
11 Jun 2020 15:39:02,617 INFO : 20% Done
11 Jun 2020 15:39:03,002 INFO : Inserting sp|P02760|AMBP_HUMAN
11 Jun 2020 15:39:03,008 INFO : 98% Done
11 Jun 2020 15:39:03,567 INFO : Done parsing Skyline document.
11 Jun 2020 15:39:03,569 INFO : Creating and populating temp tables for Proportion values
11 Jun 2020 15:39:03,603 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
11 Jun 2020 15:39:03,656 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
11 Jun 2020 15:39:03,668 INFO : Cleaning up temp tables
11 Jun 2020 15:39:04,140 INFO : Completed import of Skyline document from AMBP_2020-06-01_17-29-42.sky.zip
11 Jun 2020 15:39:04,142 INFO : 100% Done
11 Jun 2020 15:39:04,174 INFO : Starting import from AMBPb_2020-06-01_14-39-27.sky.zip
11 Jun 2020 15:39:04,181 INFO : Starting to import Skyline document from AMBPb_2020-06-01_14-39-27.sky.zip
11 Jun 2020 15:39:04,191 INFO : Expanding humanreviewed_300516.protdb
11 Jun 2020 15:39:07,011 INFO : Expanding human_consensus_final_true_lib.msp
11 Jun 2020 15:39:35,696 INFO : Expanding AMBPb.skyd
11 Jun 2020 15:39:35,699 INFO : Expanding AMBPb.sky.view
11 Jun 2020 15:39:35,700 INFO : Expanding AMBPb.sky
11 Jun 2020 15:39:35,704 WARN : The version of this Skyline document is 20.1. This is newer than the highest supported version 4.1
11 Jun 2020 15:39:35,706 INFO : 52% Done
11 Jun 2020 15:39:35,748 INFO : Inserting sp|P02760|AMBP_HUMAN
11 Jun 2020 15:39:35,753 INFO : 98% Done
11 Jun 2020 15:39:35,792 INFO : Done parsing Skyline document.
11 Jun 2020 15:39:35,794 INFO : Creating and populating temp tables for Proportion values
11 Jun 2020 15:39:35,840 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
11 Jun 2020 15:39:35,842 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
11 Jun 2020 15:39:35,843 INFO : Cleaning up temp tables
11 Jun 2020 15:39:36,268 INFO : Completed import of Skyline document from AMBPb_2020-06-01_14-39-27.sky.zip
11 Jun 2020 15:39:36,270 INFO : 100% Done
11 Jun 2020 15:39:36,386 INFO : Done importing xar
11 Jun 2020 15:39:36,392 INFO : Loading pages and webpart properties
11 Jun 2020 15:39:36,653 INFO : Done importing pages and webpart properties
11 Jun 2020 15:39:36,653 INFO :
11 Jun 2020 15:39:36,654 INFO : Experiment import completed successfully.
11 Jun 2020 15:39:36,654 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
11 Jun 2020 15:47:26,714 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
11 Jun 2020 15:47:26,714 INFO :
11 Jun 2020 15:47:26,714 INFO : Finishing up experiment copy.
11 Jun 2020 15:47:26,715 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
11 Jun 2020 15:47:26,939 INFO : Updating access URL to point to the new copy of the data.
11 Jun 2020 15:47:27,052 INFO : Setting the 'copied' timestamp on the JournalExperiment table.
11 Jun 2020 15:47:27,053 INFO : Removing copy permissions given to journal.
11 Jun 2020 15:47:27,249 INFO : Adding read permissions to all users that are folder admins in the source container.
11 Jun 2020 15:47:27,298 INFO : Setting the TargetedMS folder type to 'Experimental Data'
11 Jun 2020 15:47:27,316 INFO : Updating the 'Raw Data' tab configuration
11 Jun 2020 15:47:27,334 INFO : Updating dataFileUrls for run AMBPb_2020-06-01_14-39-27.sky.zip; targetedms run ID 88922
11 Jun 2020 15:47:27,335 INFO : Updating dataFileUrl...
11 Jun 2020 15:47:27,335 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/BRFAA%20-%20Multiplexed%20MRM-based%20protein%20quantification%20of%20putative%20prognostic%20biomarkers%20for%20chronic%20kidney%20disease%20progression%20in%20plasma_1914067f-8e5c-1038-9976-3013bb9ba8d4/_temp__2020-06-11_15-11-20/export/xar/experiments_and_runs.xar.exploded/Run86395/AMBPb_2020-06-01_14-39-27.sky.zip
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11 Jun 2020 15:47:27,532 INFO : to: file:///data/labkey/files/Panorama%20Public/2020/BRFAA%20-%20Multiplexed%20MRM-based%20protein%20quantification%20of%20putative%20prognostic%20biomarkers%20for%20chronic%20kidney%20disease%20progression%20in%20plasma/@files/SERPINF1_2020-06-05_12-55-50.sky.zip
11 Jun 2020 15:47:27,536 INFO : Updating dataFileUrls for run SERPINF1b_2020-06-05_16-03-56.sky.zip; targetedms run ID 88910
11 Jun 2020 15:47:27,537 INFO : Updating dataFileUrl...
11 Jun 2020 15:47:27,537 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/BRFAA%20-%20Multiplexed%20MRM-based%20protein%20quantification%20of%20putative%20prognostic%20biomarkers%20for%20chronic%20kidney%20disease%20progression%20in%20plasma_1914067f-8e5c-1038-9976-3013bb9ba8d4/_temp__2020-06-11_15-11-20/export/xar/experiments_and_runs.xar.exploded/Run86684/SERPINF1b_2020-06-05_16-03-56.sky.zip
11 Jun 2020 15:47:27,537 INFO : to: file:///data/labkey/files/Panorama%20Public/2020/BRFAA%20-%20Multiplexed%20MRM-based%20protein%20quantification%20of%20putative%20prognostic%20biomarkers%20for%20chronic%20kidney%20disease%20progression%20in%20plasma/@files/SERPINF1b_2020-06-05_16-03-56.sky.zip
11 Jun 2020 15:47:27,540 INFO : Updating dataFileUrl...
11 Jun 2020 15:47:27,540 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/BRFAA%20-%20Multiplexed%20MRM-based%20protein%20quantification%20of%20putative%20prognostic%20biomarkers%20for%20chronic%20kidney%20disease%20progression%20in%20plasma_1914067f-8e5c-1038-9976-3013bb9ba8d4/_temp__2020-06-11_15-11-20/export/xar/experiments_and_runs.xar.exploded/Run86684/SERPINF1b_2020-06-05_16-03-56/SERPINF1b.skyd
11 Jun 2020 15:47:27,540 INFO : to: file:///data/labkey/files/Panorama%20Public/2020/BRFAA%20-%20Multiplexed%20MRM-based%20protein%20quantification%20of%20putative%20prognostic%20biomarkers%20for%20chronic%20kidney%20disease%20progression%20in%20plasma/@files/SERPINF1b_2020-06-05_16-03-56/SERPINF1b.skyd
11 Jun 2020 15:47:27,544 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'