10 Apr 2019 10:46:12,394 INFO : Copying experiment "In vitro kinase assay of human FLNc domain 18-21 with Akt and PKC alpha" from folder /University of Freiburg - Warscheid Lab/Z-disc/In vitro kinase assay of hFLNc domain 18-21 to /Panorama Public/2019/Warscheid Lab - In vitro kinase assay of hFLNc domain 18-21

10 Apr 2019 10:46:12,395 INFO : =======================================

10 Apr 2019 10:46:12,547 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentExportTask' at location 'webserver-high-priority'

10 Apr 2019 10:46:12,547 INFO : 

10 Apr 2019 10:46:12,547 INFO : Exporting experiment.

10 Apr 2019 10:46:17,312 INFO : 

10 Apr 2019 10:46:17,312 INFO : Experiment export completed successfully.

10 Apr 2019 10:46:17,312 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentExportTask'

10 Apr 2019 10:46:17,361 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentImportTask' at location 'webserver-high-priority'

10 Apr 2019 10:46:17,361 INFO : 

10 Apr 2019 10:46:17,361 INFO : Importing experiment.

10 Apr 2019 10:46:17,368 INFO : Loading folder properties (folder type, settings and active modules)

10 Apr 2019 10:46:17,507 INFO : Done importing folder properties (folder type, settings and active modules)

10 Apr 2019 10:46:17,511 INFO : Loading grid views

10 Apr 2019 10:46:17,523 INFO : 2 custom views imported

10 Apr 2019 10:46:17,523 INFO : Done importing grid views

10 Apr 2019 10:46:17,527 INFO : Loading xar

10 Apr 2019 10:46:18,004 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-5251:TargetedMS.ImportSkyZip'

10 Apr 2019 10:46:18,010 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-5251:TargetedMS.ImportSkyZip.Core'

10 Apr 2019 10:46:18,016 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-5251:TargetedMS.ImportSkyZip.Output'

10 Apr 2019 10:46:18,016 DEBUG: Protocol import complete

10 Apr 2019 10:46:18,019 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-5251:In+vitro+kinase+assay+of+human+FLNc+domain+18-21+with+Akt+and+PKC+alpha'

10 Apr 2019 10:46:18,019 DEBUG: Experiment/Run group import complete

10 Apr 2019 10:46:18,066 DEBUG: Protocol action set import complete

10 Apr 2019 10:46:18,111 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5251:TargetedMS.ImportSkyZip'

10 Apr 2019 10:46:18,229 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-5251:1642932c-fe96-1035-940b-3013bb9b1c47'

10 Apr 2019 10:46:18,229 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5251:TargetedMS.ImportSkyZip.Core'

10 Apr 2019 10:46:18,261 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5251:TargetedMS.ImportSkyZip.Output'

10 Apr 2019 10:46:18,263 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-5251:16429364-fe96-1035-940b-3013bb9b1c47'

10 Apr 2019 10:46:18,264 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/Warscheid%20Lab%20-%20In%20vitro%20kinase%20assay%20of%20hFLNc%20domain%2018-21/@files/export/xar/experiments_and_runs.xar.exploded/Run27998/FLNcd18-21_IVKA.sky.zip into the system

10 Apr 2019 10:46:18,267 INFO : Starting import from FLNcd18-21_IVKA.sky.zip

10 Apr 2019 10:46:18,275 INFO : Starting to import Skyline document from FLNcd18-21_IVKA.sky.zip

10 Apr 2019 10:46:18,276 INFO : Expanding FLNcd18-21_IVKA.blib

10 Apr 2019 10:46:18,277 INFO : Expanding FLNcd18-21_IVKA.redundant.blib

10 Apr 2019 10:46:18,283 INFO : Expanding FLNcd18-21_IVKA.skyd

10 Apr 2019 10:46:19,341 INFO : Expanding FLNcd18-21_IVKA.sky.view

10 Apr 2019 10:46:19,342 INFO : Expanding FLNcd18-21_IVKA.sky

10 Apr 2019 10:46:20,849 INFO : Inserting sp|Q14315|FLNCd18-21-hWT_HUMAN

10 Apr 2019 10:46:23,886 INFO : Total peptides inserted: 14

10 Apr 2019 10:46:27,329 INFO : Completed import of Skyline document from FLNcd18-21_IVKA.sky.zip

10 Apr 2019 10:46:27,335 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/Warscheid%20Lab%20-%20In%20vitro%20kinase%20assay%20of%20hFLNc%20domain%2018-21/@files/export/xar/experiments_and_runs.xar.exploded/Run27998/FLNcd18-21_IVKA.sky.zip into the system

10 Apr 2019 10:46:27,348 INFO : Done importing xar

10 Apr 2019 10:46:27,351 INFO : Loading wikis

10 Apr 2019 10:46:27,456 INFO : 2 wikis imported

10 Apr 2019 10:46:27,456 INFO : Done importing wikis

10 Apr 2019 10:46:27,930 INFO : Loading pages and webpart properties

10 Apr 2019 10:46:28,010 INFO : Done importing pages and webpart properties

10 Apr 2019 10:46:28,010 INFO : 

10 Apr 2019 10:46:28,011 INFO : Experiment import completed successfully.

10 Apr 2019 10:46:28,011 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentImportTask'

10 Apr 2019 10:46:28,086 INFO : Starting to run task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'

10 Apr 2019 10:46:28,086 INFO : 

10 Apr 2019 10:46:28,086 INFO : Finishing up experiment copy.

10 Apr 2019 10:46:28,090 INFO : Creating a new TargetedMS experiment entry in targetedms.ExperimentAnnotations.

10 Apr 2019 10:46:28,099 INFO : Updating access URL to point to the new copy of the data.

10 Apr 2019 10:46:28,165 INFO : Setting the 'copied' timestamp on the JournalExperiment table.

10 Apr 2019 10:46:28,168 INFO : Removing copy permissions given to journal.

10 Apr 2019 10:46:28,236 INFO : Adding read permissions to all users that are folder admins in the source container.

10 Apr 2019 10:46:28,259 INFO : Setting the TargetedMS folder type to 'Experimental Data'

10 Apr 2019 10:46:28,281 INFO : Updating the 'Raw Data' tab configuration

10 Apr 2019 10:46:28,287 INFO : Updating dataFileUrls for run FLNcd18-21_IVKA.sky.zip; targetedms run ID 61510

10 Apr 2019 10:46:28,289 INFO : Adding ExpData for .skyd file

10 Apr 2019 10:46:28,289 INFO : Updating dataFileUrl...

10 Apr 2019 10:46:28,290 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/Warscheid%20Lab%20-%20In%20vitro%20kinase%20assay%20of%20hFLNc%20domain%2018-21/@files/export/xar/experiments_and_runs.xar.exploded/Run27998/FLNcd18-21_IVKA.sky.zip

10 Apr 2019 10:46:28,290 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/Warscheid%20Lab%20-%20In%20vitro%20kinase%20assay%20of%20hFLNc%20domain%2018-21/@files/FLNcd18-21_IVKA.sky.zip

10 Apr 2019 10:46:28,299 INFO : Updating dataFileUrl...

10 Apr 2019 10:46:28,299 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/Warscheid%20Lab%20-%20In%20vitro%20kinase%20assay%20of%20hFLNc%20domain%2018-21/@files/export/xar/experiments_and_runs.xar.exploded/Run27998/FLNcd18-21_IVKA/FLNcd18-21_IVKA.skyd

10 Apr 2019 10:46:28,299 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/Warscheid%20Lab%20-%20In%20vitro%20kinase%20assay%20of%20hFLNc%20domain%2018-21/@files/FLNcd18-21_IVKA/FLNcd18-21_IVKA.skyd

10 Apr 2019 10:46:28,530 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask'