19 Aug 2019 10:47:45,312 INFO : Copying experiment "Urinary PRM analysis of early type 1 diabetes" from folder /U of Toronto - Diamandis Lab/Van et al, Urinary peptidomics in type 1 diabetes to /Panorama Public/2019/U of Toronto Diamandis Lab - Urinary peptidomics in type 1 diabetes
19 Aug 2019 10:47:45,313 INFO : =======================================
19 Aug 2019 15:23:05,572 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
19 Aug 2019 15:23:05,589 INFO :
19 Aug 2019 15:23:05,590 INFO : Exporting experiment.
19 Aug 2019 15:23:29,777 INFO :
19 Aug 2019 15:23:29,777 INFO : Experiment export completed successfully.
19 Aug 2019 15:23:29,777 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentExportTask'
19 Aug 2019 19:06:52,100 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
19 Aug 2019 19:06:52,116 INFO :
19 Aug 2019 19:06:52,116 INFO : Importing experiment.
19 Aug 2019 19:06:52,139 INFO : Loading folder properties (folder type, settings and active modules)
19 Aug 2019 19:06:52,237 INFO : Done importing folder properties (folder type, settings and active modules)
19 Aug 2019 19:06:52,240 INFO : Loading etl definitions
19 Aug 2019 19:06:52,242 INFO : Loading wikis
19 Aug 2019 19:06:52,265 INFO : 0 wikis imported
19 Aug 2019 19:06:52,265 INFO : Done importing wikis
19 Aug 2019 19:07:15,096 INFO : Loading xar
19 Aug 2019 19:07:15,357 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-5864:TargetedMS.ImportSkyZip'
19 Aug 2019 19:07:15,362 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-5864:TargetedMS.ImportSkyZip.Core'
19 Aug 2019 19:07:15,366 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-5864:TargetedMS.ImportSkyZip.Output'
19 Aug 2019 19:07:15,367 DEBUG: Protocol import complete
19 Aug 2019 19:07:15,428 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-5864:Urinary+PRM+analysis+of+early+type+1+diabetes'
19 Aug 2019 19:07:15,428 DEBUG: Experiment/Run group import complete
19 Aug 2019 19:07:15,528 DEBUG: Protocol action set import complete
19 Aug 2019 19:07:15,576 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5864:TargetedMS.ImportSkyZip'
19 Aug 2019 19:07:15,773 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-5864:b5e54720-fa7c-1036-8133-3013bb9b374c'
19 Aug 2019 19:07:15,794 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-5864:b5e5470b-fa7c-1036-8133-3013bb9b374c'
19 Aug 2019 19:07:15,794 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5864:TargetedMS.ImportSkyZip.Core'
19 Aug 2019 19:07:15,813 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5864:TargetedMS.ImportSkyZip.Output'
19 Aug 2019 19:07:15,814 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-5864:b5e54849-fa7c-1036-8133-3013bb9b374c'
19 Aug 2019 19:07:15,816 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/U%20of%20Toronto%20Diamandis%20Lab%20-%20Urinary%20peptidomics%20in%20type%201%20diabetes/@files/export/xar/experiments_and_runs.xar.exploded/Run45976/SPARCMA-JV-185_sparc_finalized.skyd into the system
19 Aug 2019 19:07:15,817 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/U%20of%20Toronto%20Diamandis%20Lab%20-%20Urinary%20peptidomics%20in%20type%201%20diabetes/@files/export/xar/experiments_and_runs.xar.exploded/Run45976/SPARCMA-JV-185_sparc_finalized.skyd into the system
19 Aug 2019 19:07:15,817 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/U%20of%20Toronto%20Diamandis%20Lab%20-%20Urinary%20peptidomics%20in%20type%201%20diabetes/@files/export/xar/experiments_and_runs.xar.exploded/Run45976/SPARCMA-JV-185_sparc_finalized_2019-01-14_18-08-18.sky.zip into the system
19 Aug 2019 19:07:15,820 INFO : Starting import from SPARCMA-JV-185_sparc_finalized_2019-01-14_18-08-18.sky.zip
19 Aug 2019 19:07:15,826 INFO : Starting to import Skyline document from SPARCMA-JV-185_sparc_finalized_2019-01-14_18-08-18.sky.zip
19 Aug 2019 19:07:15,826 INFO : Expanding SPARCMA-JV-185_sparc_finalized.skyd
19 Aug 2019 19:07:16,115 INFO : Expanding SPARCMA-JV-185_sparc_finalized.sky.view
19 Aug 2019 19:07:16,117 INFO : Expanding SPARCMA-JV-185_sparc_finalized.sky
19 Aug 2019 19:07:17,145 INFO : Inserting Passing Peptides
19 Aug 2019 19:07:35,914 INFO : Total peptides inserted: 20
19 Aug 2019 19:07:35,919 WARN : Log file is missing. Proceeding without the log.
19 Aug 2019 19:07:37,626 INFO : Completed import of Skyline document from SPARCMA-JV-185_sparc_finalized_2019-01-14_18-08-18.sky.zip
19 Aug 2019 19:07:37,633 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/U%20of%20Toronto%20Diamandis%20Lab%20-%20Urinary%20peptidomics%20in%20type%201%20diabetes/@files/export/xar/experiments_and_runs.xar.exploded/Run45976/SPARCMA-JV-185_sparc_finalized_2019-01-14_18-08-18.sky.zip into the system
19 Aug 2019 19:07:37,658 INFO : Done importing xar
19 Aug 2019 19:07:37,665 INFO : Loading pages and webpart properties
19 Aug 2019 19:07:37,879 INFO : Done importing pages and webpart properties
19 Aug 2019 19:07:37,880 INFO :
19 Aug 2019 19:07:37,880 INFO : Experiment import completed successfully.
19 Aug 2019 19:07:37,881 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentImportTask'
19 Aug 2019 21:11:55,282 INFO : Starting to run task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
19 Aug 2019 21:11:55,310 INFO :
19 Aug 2019 21:11:55,311 INFO : Finishing up experiment copy.
19 Aug 2019 21:11:55,332 INFO : Creating a new TargetedMS experiment entry in targetedms.ExperimentAnnotations.
19 Aug 2019 21:11:55,596 INFO : Updating access URL to point to the new copy of the data.
19 Aug 2019 21:11:55,811 INFO : Setting the 'copied' timestamp on the JournalExperiment table.
19 Aug 2019 21:11:55,852 INFO : Removing copy permissions given to journal.
19 Aug 2019 21:11:56,000 INFO : Adding read permissions to all users that are folder admins in the source container.
19 Aug 2019 21:11:56,106 INFO : Setting the TargetedMS folder type to 'Experimental Data'
19 Aug 2019 21:11:56,206 INFO : Updating the 'Raw Data' tab configuration
19 Aug 2019 21:11:56,305 INFO : Updating dataFileUrls for run SPARCMA-JV-185_sparc_finalized_2019-01-14_18-08-18.sky.zip; targetedms run ID 73115
19 Aug 2019 21:11:56,306 INFO : Adding ExpData for .skyd file
19 Aug 2019 21:11:56,354 INFO : Updating dataFileUrl...
19 Aug 2019 21:11:56,354 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/U%20of%20Toronto%20Diamandis%20Lab%20-%20Urinary%20peptidomics%20in%20type%201%20diabetes/@files/export/xar/experiments_and_runs.xar.exploded/Run45976/SPARCMA-JV-185_sparc_finalized.skyd
19 Aug 2019 21:11:56,355 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/U%20of%20Toronto%20Diamandis%20Lab%20-%20Urinary%20peptidomics%20in%20type%201%20diabetes/@files/SPARCMA-JV-185_sparc_finalized_2019-01-14_18-08-18/SPARCMA-JV-185_sparc_finalized.skyd
19 Aug 2019 21:11:56,438 INFO : Updating dataFileUrl...
19 Aug 2019 21:11:56,438 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/U%20of%20Toronto%20Diamandis%20Lab%20-%20Urinary%20peptidomics%20in%20type%201%20diabetes/@files/export/xar/experiments_and_runs.xar.exploded/Run45976/SPARCMA-JV-185_sparc_finalized_2019-01-14_18-08-18.sky.zip
19 Aug 2019 21:11:56,439 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/U%20of%20Toronto%20Diamandis%20Lab%20-%20Urinary%20peptidomics%20in%20type%201%20diabetes/@files/SPARCMA-JV-185_sparc_finalized_2019-01-14_18-08-18.sky.zip
19 Aug 2019 21:11:56,475 INFO : Updating dataFileUrl...
19 Aug 2019 21:11:56,476 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/U%20of%20Toronto%20Diamandis%20Lab%20-%20Urinary%20peptidomics%20in%20type%201%20diabetes/@files/export/xar/experiments_and_runs.xar.exploded/Run45976/SPARCMA-JV-185_sparc_finalized_2019-01-14_18-08-18/SPARCMA-JV-185_sparc_finalized.skyd
19 Aug 2019 21:11:56,476 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/U%20of%20Toronto%20Diamandis%20Lab%20-%20Urinary%20peptidomics%20in%20type%201%20diabetes/@files/SPARCMA-JV-185_sparc_finalized_2019-01-14_18-08-18/SPARCMA-JV-185_sparc_finalized.skyd
19 Aug 2019 21:11:56,770 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask'