Copying experiment: Proteomic Tissue-based Classifier for Early Prediction of Prostate Cancer Progression: /Panorama Public/2020/PNNL

Copying experiment: Proteomic Tissue-based Classifier for Early Prediction of Prostate Cancer Progression

PNNL - Prostate_Biomarker_PNNL_2019

Job Status

Created:

2020-05-11 15:12:56

Modified:

2021-01-27 17:03:52

Email:

vsharma@uw.edu

Status:

COMPLETE

Info:

Description:

Copying experiment: Proteomic Tissue-based Classifier for Early Prediction of Prostate Cancer Progression

File Path:

/data/labkey/files/Panorama Public/2020/PNNL - Prostate_Biomarker_PNNL_2019/@files/Experiment_917.log

Files:

Experiment_917.log

Join job:

Status	Description

Split jobs:

Status	Description

Show Grid Data Browse Files

Log File

Show full log file Show raw log file Copy to clipboard

11 May 2020 15:12:56,827 INFO : Copying experiment "Proteomic Tissue-based Classifier for Early Prediction of Prostate Cancer Progression" from folder /PNNL/Prostate_Biomarker_PNNL_2019 to /Panorama Public/2019/PNNL - Prostate_Biomarker_PNNL_2019

11 May 2020 15:12:56,828 INFO : =======================================

11 May 2020 15:12:56,985 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'

11 May 2020 15:12:56,985 INFO :

11 May 2020 15:12:56,985 INFO : Exporting experiment.

11 May 2020 15:34:11,835 INFO :

11 May 2020 15:34:11,853 INFO : Experiment export completed successfully.

11 May 2020 15:34:11,853 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'

11 May 2020 15:34:11,969 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'

11 May 2020 15:34:11,969 INFO :

11 May 2020 15:34:11,969 INFO : Importing experiment.

11 May 2020 15:34:11,996 INFO : Loading folder properties (folder type, settings and active modules)

11 May 2020 15:34:12,169 INFO : Done importing folder properties (folder type, settings and active modules)

11 May 2020 15:34:12,177 INFO : Loading etl definitions

11 May 2020 15:34:12,187 INFO : Loading wikis

11 May 2020 15:34:12,226 INFO : 0 wikis imported

11 May 2020 15:34:12,226 INFO : Done importing wikis

11 May 2020 15:34:12,227 INFO : Starting to copy files

11 May 2020 15:34:12,234 INFO : Copied 0 files

11 May 2020 15:34:12,234 INFO : Ensuring exp.data rows exist for imported files

11 May 2020 15:34:12,349 INFO : Loading xar

11 May 2020 15:34:17,433 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-6991:Tissue-based+Proteomic+Classifier+for+Early+Prediction+of+Prostate+Cancer+Progression'

11 May 2020 15:34:17,433 DEBUG: Experiment/Run group import complete

11 May 2020 15:34:17,435 INFO : Done importing xar

11 May 2020 15:34:17,440 INFO : Loading pages and webpart properties

11 May 2020 15:34:17,636 INFO : Done importing pages and webpart properties

11 May 2020 15:34:17,669 INFO : Loading subfolders and container tabs

11 May 2020 15:34:17,817 INFO : New container created with inherited permissions for Batch1_52_proteins

11 May 2020 15:34:17,817 INFO : Loading folder archive for Batch1_52_proteins

11 May 2020 15:34:17,822 INFO : Loading folder properties (folder type, settings and active modules)

11 May 2020 15:34:17,960 INFO : Done importing folder properties (folder type, settings and active modules)

11 May 2020 15:34:17,967 INFO : Loading etl definitions

11 May 2020 15:34:17,972 INFO : Loading wikis

11 May 2020 15:34:17,997 INFO : 0 wikis imported

11 May 2020 15:34:17,997 INFO : Done importing wikis

11 May 2020 15:34:17,999 INFO : Starting to copy files

11 May 2020 15:36:18,081 INFO : 584 files copied, now copying CPDR-FFPE-ID-243.sky.view

11 May 2020 15:36:18,085 INFO : 585 files copied, now copying CPDR-FFPE-ID-361_seg1.sky

11 May 2020 15:36:18,735 INFO : 588 files copied, now copying CPDR-FFPE-ID-297.skyd

11 May 2020 15:36:19,632 INFO : 591 files copied, now copying CPDR-FFPE-ID-82_seg1.sky.view

11 May 2020 15:36:20,196 INFO : 594 files copied, now copying CPDR-FFPE-ID-253.skyd

11 May 2020 15:36:20,821 INFO : 597 files copied, now copying CPDR-FFPE-ID-209.skyd

11 May 2020 15:36:21,397 INFO : 600 files copied, now copying CPDR-FFPE-ID-500_seg2.sky

11 May 2020 15:36:21,965 INFO : 603 files copied, now copying CPDR-FFPE-ID-288.sky

11 May 2020 15:36:22,537 INFO : 606 files copied, now copying CPDR-FFPE-ID-322.skyd

11 May 2020 15:36:23,127 INFO : 609 files copied, now copying CPDR-FFPE-ID-225.sky

11 May 2020 15:36:23,667 INFO : 612 files copied, now copying CPDR-FFPE-ID-57_seg1.skyd

11 May 2020 15:36:24,205 INFO : 615 files copied, now copying CPDR-FFPE-ID-247.skyd

11 May 2020 15:36:24,827 INFO : 618 files copied, now copying CPDR-FFPE-ID-991_seg2.sky

11 May 2020 15:36:25,345 INFO : 621 files copied, now copying CPDR-FFPE-ID-316.skyd

11 May 2020 15:36:25,899 INFO : 624 files copied, now copying CPDR-FFPE-ID-273.sky.view

11 May 2020 15:36:26,508 INFO : 627 files copied, now copying CPDR-FFPE-ID-159_seg1.sky

11 May 2020 15:36:27,246 INFO : 630 files copied, now copying CPDR-FFPE-ID-260.sky

11 May 2020 15:36:27,771 INFO : 633 files copied, now copying CPDR-FFPE-ID-83.skyd

11 May 2020 15:36:28,348 INFO : 636 files copied, now copying CPDR-FFPE-ID-249.sky

11 May 2020 15:36:28,886 INFO : 639 files copied, now copying CPDR-FFPE-ID-398.sky.view

11 May 2020 15:36:29,413 INFO : 642 files copied, now copying CPDR-FFPE-ID-246.sky

11 May 2020 15:36:29,942 INFO : Copied 645 files

11 May 2020 15:36:29,943 INFO : Ensuring exp.data rows exist for imported files

11 May 2020 15:36:37,857 INFO : Loading xar

11 May 2020 15:38:09,285 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:09,288 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:09,292 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:09,292 DEBUG: Protocol import complete

11 May 2020 15:38:09,314 DEBUG: Protocol action set import complete

11 May 2020 15:38:09,324 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:09,381 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:904194ec-2428-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,388 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:904194b1-2428-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,389 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:09,393 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:09,394 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:9041989a-2428-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,399 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:09,406 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:90419981-2428-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,411 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:9041995a-2428-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,411 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:09,414 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:09,414 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:90419cd1-2428-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,419 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:09,425 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:90418cf0-2428-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,429 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:90418cc3-2428-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,430 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:09,479 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:09,479 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:9041901a-2428-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,485 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:09,491 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:904184a2-2428-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,496 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:90418471-2428-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,496 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:09,498 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:09,499 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:90418810-2428-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,504 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:09,509 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:27a50e45-242a-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,514 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:27a50dfa-242a-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,514 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:09,516 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:09,517 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:27a511d7-242a-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,521 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:09,527 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:6c9278f4-2429-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,532 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:6c9278c7-2429-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,532 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:09,547 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:09,548 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:6c927c72-2429-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,568 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:09,575 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:6c926bde-2429-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,579 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:6c926b86-2429-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,579 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:09,582 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:09,583 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:6c926fae-2429-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,588 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:09,593 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:d3accda4-2427-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,598 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:d3accd74-2427-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,598 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:09,600 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:09,601 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:d3acd28b-2427-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,605 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:09,611 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:7a5b88b7-242b-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,615 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:7a5b888f-242b-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,615 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:09,618 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:09,618 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:53f458e5-242c-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,668 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:09,675 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:7a5b84ac-242b-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,680 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:7a5b8485-242b-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,680 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:09,682 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:09,683 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:7a5b881c-242b-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,694 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:09,710 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:7a5b80e1-242b-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,714 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:7a5b80c0-242b-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,714 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:09,717 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:09,717 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:7a5b841d-242b-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,722 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:09,727 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:7a5b7cf1-242b-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,732 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:7a5b7ccc-242b-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,732 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:09,734 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:09,735 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:7a5b802d-242b-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,739 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:09,744 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:a5d54b32-242a-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,748 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:a5d54b07-242a-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,748 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:09,750 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:09,751 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:a5d54ecf-242a-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,782 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:09,802 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:27a50b22-242a-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,806 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:27a50af9-242a-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,806 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:09,809 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:09,810 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:27a50d7f-242a-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,815 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:09,820 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:904190cd-2428-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,848 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:904190aa-2428-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,849 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:09,851 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:09,852 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:90419434-2428-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,857 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:09,863 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:d3acc69d-2427-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,868 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:d3acc677-2427-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,868 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:09,870 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:09,871 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:d3acc965-2427-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,875 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:09,880 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:87f5fec1-2426-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,884 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:87f5fe9b-2426-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,884 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:09,887 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:09,887 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:6976950b-2427-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,892 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:09,897 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:a5d560ec-242a-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,901 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:a5d560c3-242a-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,902 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:09,904 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:09,904 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:a5d564fe-242a-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,909 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:09,932 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:a5d54f76-242a-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,936 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:a5d54f4c-242a-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,936 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:09,939 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:09,939 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:a5d55333-242a-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,944 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:09,949 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:18167808-242f-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,953 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:181677e2-242f-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,953 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:09,955 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:09,956 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:18167b98-242f-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,960 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:09,965 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:350aae4a-242e-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,969 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:350aae27-242e-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,969 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:09,971 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:09,972 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:350ab1a6-242e-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,976 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:09,981 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:350aa5d7-242e-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,985 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:350aa5b0-242e-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,985 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:09,987 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:09,988 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:350aa948-242e-1038-b289-3013bb9ba57c'

11 May 2020 15:38:09,992 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:09,997 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:350aa1fe-242e-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,001 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:350aa1dd-242e-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,001 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:10,003 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:10,004 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:350aa538-242e-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,008 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:10,013 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:27a529ff-242a-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,017 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:27a529e6-242a-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,017 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:10,019 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:10,019 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:27a52d9c-242a-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,023 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:10,028 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:9041a57b-2428-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,032 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:9041a558-2428-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,033 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:10,035 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:10,035 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:6c926a75-2429-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,040 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:10,045 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:904188c2-2428-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,049 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:9041889b-2428-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,049 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:10,051 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:10,051 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:90418c61-2428-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,055 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:10,061 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:d3acc33e-2427-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,065 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:d3acc311-2427-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,065 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:10,079 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:10,079 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:d3acc5eb-2427-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,084 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:10,090 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:87f5e986-2426-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,094 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:87f5e95e-2426-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,094 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:10,096 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:10,097 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:87f5ed06-2426-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,102 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:10,107 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:90418011-2428-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,111 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:90417ff3-2428-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,111 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:10,113 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:10,114 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:9041840d-2428-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,130 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:10,136 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:d3acc06b-2427-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,140 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:d3acc01d-2427-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,140 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:10,142 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:10,143 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:d3acc2a7-2427-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,148 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:10,154 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:6976a4e5-2427-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,158 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:6976a0d4-2427-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,158 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:10,160 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:10,161 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:6976a8d4-2427-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,165 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:10,170 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:87f5f490-2426-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,174 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:87f5f45e-2426-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,174 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:10,176 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:10,177 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:87f5f74d-2426-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,181 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:10,186 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:87f5dac1-2426-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,190 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:87f5daa7-2426-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,191 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:10,193 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:10,193 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:87f5dc3a-2426-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,197 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:10,203 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:9183b9e8-2425-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,207 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:9183b9b0-2425-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,207 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:10,209 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:10,210 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:9183bdf6-2425-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,214 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:10,219 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:9183a815-2425-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,223 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:9183a7e4-2425-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,223 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:10,226 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:10,226 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:9183a87d-2425-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,230 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:10,236 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:c21679c6-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,240 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:c2167993-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,240 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:10,242 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:10,243 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:c2167a51-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,247 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:10,253 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:c2167767-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,257 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:c216771d-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,257 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:10,259 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:10,260 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:c21677d5-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,282 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:10,288 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:c2167615-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,292 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:c21675ef-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,292 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:10,295 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:10,295 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:c21676a5-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,300 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:10,305 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:c2167520-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,309 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:c2167503-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,309 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:10,311 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:10,312 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:c216755c-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,316 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:10,322 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:d3acca3d-2427-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,326 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:d3acca19-2427-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,326 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:10,328 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:10,329 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:d3acccfa-2427-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,334 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:10,377 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:d3acbd12-2427-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,381 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:6976a974-2427-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,381 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:10,383 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:10,384 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:d3acbf98-2427-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,389 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:10,394 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:87f5fb46-2426-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,398 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:87f5fb1c-2426-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,399 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:10,401 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:10,402 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:87f5fe0f-2426-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,406 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:10,411 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:87f5f7e5-2426-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,415 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:87f5f7c1-2426-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,415 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:10,417 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:10,418 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:87f5faa4-2426-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,422 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:10,427 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:87f5f129-2426-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,431 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:87f5f104-2426-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,431 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:10,433 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:10,434 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:87f5f3df-2426-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,438 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:10,444 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:87f5edb6-2426-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,448 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:87f5ed8d-2426-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,448 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:10,450 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:10,451 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:87f5f082-2426-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,455 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:10,460 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:87f5e697-2426-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,464 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:87f5e671-2426-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,464 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:10,466 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:10,467 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:87f5e8f6-2426-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,488 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:10,495 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:9183c973-2425-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,499 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:9183c93a-2425-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,499 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:10,501 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:10,502 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:87f5da38-2426-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,507 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:10,512 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:9183bebe-2425-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,516 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:9183be97-2425-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,516 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:10,518 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:10,519 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:9183c18d-2425-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,524 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:10,529 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:9183aa51-2425-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,534 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:9183aa33-2425-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,534 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:10,536 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:10,537 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:9183aadc-2425-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,542 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:10,548 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:9183a94a-2425-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,552 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:9183a92b-2425-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,552 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:10,554 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:10,555 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:9183a9a4-2425-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,560 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:10,566 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:c2169648-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,570 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:c216961c-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,570 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:10,572 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:10,573 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:c21696c9-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,577 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:10,583 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:c2168abc-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,587 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:c2168652-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,587 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:10,589 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:10,590 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:c2169012-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,594 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:10,599 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:c2167892-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,603 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:c2167870-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,603 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:10,605 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:10,606 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:c2167922-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,610 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:10,616 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:b1099fbe-2423-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,620 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:b1099f97-2423-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,620 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:10,622 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:10,622 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:c21671a4-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,654 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:10,660 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:b1099d2e-2423-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,665 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:b1099d04-2423-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,665 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:10,667 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:10,668 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:b1099daa-2423-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,672 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:10,678 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:b1099968-2423-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,682 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:b109992a-2423-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,682 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:10,684 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:10,685 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:b1099a18-2423-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,689 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:10,695 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:87f5e363-2426-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,699 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:87f5e345-2426-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,699 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:10,738 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:10,739 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:87f5e5f9-2426-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,745 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:10,753 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:87f5dce3-2426-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,775 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:87f5dcb9-2426-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,775 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:10,778 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:10,778 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:87f5df6e-2426-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,783 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:10,789 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:9183b5fa-2425-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,793 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:9183b5cd-2425-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,793 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:10,795 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:10,796 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:9183b883-2425-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,821 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:10,827 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:9183af57-2425-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,832 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:9183af35-2425-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,832 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:10,834 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:10,835 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:9183b200-2425-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,839 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:10,844 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:9183ab90-2425-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,848 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:9183ab64-2425-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,848 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:10,850 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:10,851 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:9183ae8e-2425-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,855 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:10,860 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:9183a6c4-2425-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,864 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:9183a688-2425-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,864 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:10,866 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:10,867 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:9183a73c-2425-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,871 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:10,876 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:9183a43d-2425-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,880 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:9183a3fc-2425-1038-b289-3013bb9ba57c'

11 May 2020 15:38:10,881 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:11,010 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:11,011 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:9183a4b4-2425-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,017 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:11,023 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:c2169122-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,027 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:c21690e2-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,028 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:11,030 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:11,031 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:c2169199-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,036 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:11,042 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:c2167b38-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,046 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:c2167b07-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,047 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:11,049 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:11,050 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:c2167bc9-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,055 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:11,060 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:c2167404-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,070 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:c21673da-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,070 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:11,072 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:11,073 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:c2167489-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,078 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:11,098 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:87f5e024-2426-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,102 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:87f5dfd0-2426-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,102 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:11,104 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:11,105 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:87f5e2c1-2426-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,109 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:11,115 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:9183c5e6-2425-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,119 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:9183c5b6-2425-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,119 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:11,121 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:11,122 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:9183c897-2425-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,126 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:11,132 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:9183c286-2425-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,135 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:9183c254-2425-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,136 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:11,138 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:11,138 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:9183c52a-2425-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,142 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:11,147 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:9183b2a0-2425-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,151 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:9183b276-2425-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,151 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:11,153 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:11,154 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:9183b51c-2425-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,176 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:11,181 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:9183a585-2425-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,186 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:9183a563-2425-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,186 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:11,188 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:11,189 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:9183a61e-2425-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,193 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:11,198 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:c216924f-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,203 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:c2169227-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,203 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:11,205 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:11,206 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:c21692c4-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,210 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:11,215 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:c2167c96-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,219 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:c2167c70-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,219 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:11,221 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:11,222 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:c2167d2d-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,226 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:11,231 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:c21672d7-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,235 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:c216727b-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,235 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:11,237 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:11,238 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:c2167346-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,242 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:11,247 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:b1099e75-2423-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,251 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:b1099e4c-2423-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,251 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:11,253 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:11,254 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:b1099efe-2423-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,258 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:11,263 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:b1099b3d-2423-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,267 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:b1099afb-2423-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,267 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:11,269 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:11,270 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:b1099c05-2423-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,274 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:11,279 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:350abebd-242e-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,283 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:350abe96-242e-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,283 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:11,286 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:11,286 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:350ac29e-242e-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,291 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:11,296 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:350ab654-242e-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,501 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:350ab630-242e-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,501 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:11,506 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:11,506 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:350ab9ae-242e-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,512 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:11,517 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:378a7b94-242d-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,521 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:378a7b52-242d-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,521 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:11,523 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:11,524 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:378a7ed6-242d-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,528 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:11,556 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:18166a6a-242f-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,564 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:18166a42-242f-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,564 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:11,568 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:11,569 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:18166d85-242f-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,577 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:11,586 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:350a9df7-242e-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,592 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:350a9dce-242e-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,592 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:11,596 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:11,597 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:350aa158-242e-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,605 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:11,614 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:378a8381-242d-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,620 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:378a8348-242d-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,620 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:11,624 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:11,625 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:350a9d2d-242e-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,633 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:11,642 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:378a7777-242d-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,648 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:378a774c-242d-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,648 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:11,652 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:11,653 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:378a7ac8-242d-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,661 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:11,671 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:378a73ae-242d-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,678 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:378a738c-242d-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,679 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:11,683 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:11,684 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:378a76c8-242d-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,692 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:11,701 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:378a5ef8-242d-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,707 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:378a5ec3-242d-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,707 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:11,711 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:11,712 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:378a6250-242d-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,721 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:11,730 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:53f477e2-242c-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,736 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:53f477aa-242c-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,737 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:11,740 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:11,741 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:53f47b0c-242c-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,749 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:11,758 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:53f459f6-242c-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,765 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:53f459cd-242c-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,765 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:11,769 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:11,770 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:53f45edd-242c-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,778 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:11,787 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:350ab266-242e-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,794 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:350ab245-242e-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,794 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:11,798 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:11,799 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:350ab587-242e-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,807 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:11,815 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:350aaa1b-242e-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,821 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:350aa9f8-242e-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,821 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:11,825 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:11,826 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:350aad78-242e-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,834 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:11,841 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:378a7f7d-242d-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,848 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:378a7f5b-242d-1038-b289-3013bb9ba57c'

11 May 2020 15:38:11,848 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:11,852 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:11,853 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:378a82d5-242d-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,148 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:12,156 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:53f47b9c-242c-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,162 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:53f47b77-242c-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,162 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:12,195 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:12,196 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:53f47ef4-242c-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,202 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:12,209 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:53f46c02-242c-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,214 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:53f46bda-242c-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,215 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:12,217 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:12,218 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:53f46f38-242c-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,223 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:12,230 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:53f467c1-242c-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,235 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:53f46796-242c-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,235 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:12,237 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:12,238 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:53f46b4d-242c-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,243 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:12,249 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:53f46374-242c-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,254 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:53f4634c-242c-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,254 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:12,257 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:12,258 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:53f466f6-242c-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,263 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:12,269 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:a5d5658f-242a-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,274 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:a5d56568-242a-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,274 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:12,277 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:12,277 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:a5d56857-242a-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,282 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:12,288 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:27a52e6b-242a-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,294 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:27a52e1b-242a-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,294 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:12,296 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:12,297 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:a5d54596-242a-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,302 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:12,307 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:378a6fce-242d-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,311 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:378a6fa7-242d-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,311 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:12,313 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:12,313 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:378a7313-242d-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,333 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:12,339 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:378a6acc-242d-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,344 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:378a6aa3-242d-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,344 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:12,347 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:12,347 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:378a6e14-242d-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,352 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:12,357 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:7a5b7931-242b-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,361 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:7a5b7912-242b-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,361 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:12,363 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:12,364 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:7a5b7c58-242b-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,368 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:12,373 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:7a5b694b-242b-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,377 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:7a5b691f-242b-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,377 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:12,399 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:12,399 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:7a5b6c77-242b-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,429 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:12,434 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:7a5b64e5-242b-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,439 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:7a5b64c2-242b-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,439 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:12,441 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:12,441 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:7a5b6876-242b-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,446 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:12,452 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:a5d568d8-242a-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,456 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:a5d568bf-242a-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,456 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:12,458 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:12,458 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:7a5b647a-242b-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,463 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:12,488 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:6c928b3f-2429-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,502 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:6c928b11-2429-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,502 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:12,505 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:12,505 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:6c928ddf-2429-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,518 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:12,523 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:6c9286e8-2429-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,527 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:6c9286a9-2429-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,527 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:12,529 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:12,530 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:6c928a71-2429-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,534 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:12,539 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:6c927d76-2429-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,543 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:6c927d34-2429-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,543 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:12,546 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:12,546 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:6c928161-2429-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,551 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:12,556 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:1816644a-242f-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,560 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:18166428-242f-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,560 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:12,562 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:12,563 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:18166955-242f-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,568 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:12,573 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:378a62f3-242d-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,577 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:378a62ce-242d-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,577 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:12,579 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:12,579 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:378a6650-242d-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,584 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:12,589 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:53f473a3-242c-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,593 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:53f4737e-242c-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,593 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:12,595 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:12,596 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:53f47737-242c-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,601 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:12,605 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:53f46fd2-242c-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,610 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:53f46fb3-242c-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,610 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:12,612 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:12,613 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:53f472fd-242c-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,618 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:12,622 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:53f45f84-242c-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,627 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:53f45f4b-242c-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,627 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:12,629 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:12,630 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:53f462d0-242c-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,635 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:12,640 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:7a5b7101-242b-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,643 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:7a5b70da-242b-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,644 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:12,646 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:12,646 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:7a5b7471-242b-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,651 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:12,656 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:a5d557cd-242a-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,660 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:a5d557aa-242a-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,660 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:12,662 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:12,662 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:a5d55b96-242a-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,667 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:12,672 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:a5d553e9-242a-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,676 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:a5d553c4-242a-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,676 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:12,678 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:12,679 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:a5d5573a-242a-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,683 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:12,688 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:a5d54642-242a-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,692 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:a5d5461d-242a-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,692 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:12,694 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:12,695 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:a5d54a57-242a-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,699 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:12,704 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:6c928e79-2429-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,708 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:6c928e45-2429-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,708 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:12,710 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:12,711 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:27a50a65-242a-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,715 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:12,721 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:6c9271f6-2429-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,731 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:6c9271bf-2429-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,731 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:12,734 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:12,734 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:6c927716-2429-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,739 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:12,744 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:9041a169-2428-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,749 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:9041a141-2428-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,749 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:12,751 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:12,751 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:9041a4d4-2428-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,756 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:12,761 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:90419d73-2428-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,766 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:90419d4c-2428-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,766 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:12,769 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:12,770 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:9041a0dd-2428-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,775 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:12,781 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:350aba5a-242e-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,786 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:350aba36-242e-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,786 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:12,788 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:12,788 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:350abdfb-242e-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,793 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:12,798 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:378a66f3-242d-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,802 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:378a66cd-242d-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,802 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:12,804 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:12,805 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:378a6a24-242d-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,809 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:12,814 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:7a5b7514-242b-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,818 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:7a5b74f3-242b-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,818 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:12,820 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:12,820 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:7a5b7897-242b-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,825 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:12,830 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:7a5b6d27-242b-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,833 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:7a5b6ce2-242b-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,834 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:12,836 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:12,836 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:7a5b7072-242b-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,871 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:12,877 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:a5d55c59-242a-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,882 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:a5d55c2b-242a-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,882 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:12,884 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:12,885 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:a5d56029-242a-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,890 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:12,895 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:27a5266e-242a-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,899 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:27a52655-242a-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,899 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:12,901 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:12,901 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:27a52954-242a-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,906 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:12,910 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:27a51267-242a-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,914 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:27a5124c-242a-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,914 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:12,916 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:12,917 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:27a51ce1-242a-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,922 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:12,927 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:6c928227-2429-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,931 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:6c928201-2429-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,931 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:12,933 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:12,934 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:6c928622-2429-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,938 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:12,943 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:c216951c-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,947 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:c21694f8-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,947 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:12,949 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:12,950 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:c2169590-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,954 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:12,959 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:c21697c2-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,963 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:c2169793-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,963 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:12,965 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:12,966 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:9183a374-2425-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,970 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip'

11 May 2020 15:38:12,976 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6994:c21693f0-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,980 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6994:c21693c3-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,980 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Core'

11 May 2020 15:38:12,982 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6994:TargetedMS.ImportSkyZip.Output'

11 May 2020 15:38:12,983 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6994:c216946a-2424-1038-b289-3013bb9ba57c'

11 May 2020 15:38:12,985 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80115/CPDR-FFPE-ID-326_2020-01-28_10-22-09/CPDR-FFPE-ID-326.skyd into the system

11 May 2020 15:38:12,986 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80115/CPDR-FFPE-ID-326_2020-01-28_10-22-09/CPDR-FFPE-ID-326.skyd into the system

11 May 2020 15:38:12,986 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80115/CPDR-FFPE-ID-326_2020-01-28_10-22-09.sky.zip into the system

11 May 2020 15:38:12,988 INFO : Starting import from CPDR-FFPE-ID-326_2020-01-28_10-22-09.sky.zip

11 May 2020 15:38:12,993 INFO : Starting to import Skyline document from CPDR-FFPE-ID-326_2020-01-28_10-22-09.sky.zip

11 May 2020 15:38:13,001 INFO : Expanding CPDR-FFPE-ID-326.skyd

11 May 2020 15:38:13,182 INFO : Expanding CPDR-FFPE-ID-326.sky.view

11 May 2020 15:38:13,183 INFO : Expanding CPDR-FFPE-ID-326.sky

11 May 2020 15:38:13,739 INFO : Inserting TFF3

11 May 2020 15:38:13,832 INFO : 1% Done

11 May 2020 15:38:14,293 INFO : 2% Done

11 May 2020 15:38:14,580 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:14,580 INFO : Inserting AKT1

11 May 2020 15:38:14,620 INFO : 3% Done

11 May 2020 15:38:14,786 INFO : 4% Done

11 May 2020 15:38:15,175 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:15,175 INFO : Inserting AMACR

11 May 2020 15:38:15,190 INFO : 5% Done

11 May 2020 15:38:15,396 INFO : 6% Done

11 May 2020 15:38:15,523 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:15,523 INFO : Inserting ANDR

11 May 2020 15:38:15,526 INFO : 7% Done

11 May 2020 15:38:15,729 INFO : 8% Done

11 May 2020 15:38:15,927 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:15,928 INFO : Inserting ANXA2

11 May 2020 15:38:16,188 INFO : 9% Done

11 May 2020 15:38:16,440 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:16,440 INFO : Inserting AURKA

11 May 2020 15:38:16,459 INFO : 10% Done

11 May 2020 15:38:16,779 INFO : 11% Done

11 May 2020 15:38:16,965 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:16,966 INFO : Inserting BRAF

11 May 2020 15:38:16,982 INFO : 12% Done

11 May 2020 15:38:17,165 INFO : 13% Done

11 May 2020 15:38:17,469 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:17,469 INFO : Inserting CAMKK2

11 May 2020 15:38:17,485 INFO : 14% Done

11 May 2020 15:38:17,706 INFO : 15% Done

11 May 2020 15:38:17,904 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:17,904 INFO : Inserting CCND1

11 May 2020 15:38:17,915 INFO : 16% Done

11 May 2020 15:38:18,258 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:18,258 INFO : Inserting CDN1A

11 May 2020 15:38:18,288 INFO : 17% Done

11 May 2020 15:38:18,504 INFO : 18% Done

11 May 2020 15:38:18,694 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:18,694 INFO : Inserting CRISP3

11 May 2020 15:38:18,723 INFO : 19% Done

11 May 2020 15:38:18,955 INFO : 20% Done

11 May 2020 15:38:19,225 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:19,225 INFO : Inserting DCOR

11 May 2020 15:38:19,250 INFO : 21% Done

11 May 2020 15:38:19,496 INFO : 22% Done

11 May 2020 15:38:19,711 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:19,711 INFO : Inserting EGFR

11 May 2020 15:38:19,744 INFO : 23% Done

11 May 2020 15:38:19,947 INFO : 24% Done

11 May 2020 15:38:20,107 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:20,107 INFO : Inserting EZH2

11 May 2020 15:38:20,118 INFO : 25% Done

11 May 2020 15:38:20,497 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:20,497 INFO : Inserting FGFR1

11 May 2020 15:38:20,679 INFO : 26% Done

11 May 2020 15:38:20,884 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:20,884 INFO : Inserting FOLH1

11 May 2020 15:38:20,948 INFO : 27% Done

11 May 2020 15:38:21,136 INFO : 28% Done

11 May 2020 15:38:21,336 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:21,336 INFO : Inserting HIF1A

11 May 2020 15:38:21,364 INFO : 29% Done

11 May 2020 15:38:21,548 INFO : 30% Done

11 May 2020 15:38:21,736 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:21,737 INFO : Inserting HPN

11 May 2020 15:38:21,753 INFO : 31% Done

11 May 2020 15:38:21,936 INFO : 32% Done

11 May 2020 15:38:22,127 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:22,128 INFO : Inserting HSPB1

11 May 2020 15:38:22,143 INFO : 33% Done

11 May 2020 15:38:22,342 INFO : 34% Done

11 May 2020 15:38:22,569 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:22,569 INFO : Inserting HXC6

11 May 2020 15:38:22,589 INFO : 35% Done

11 May 2020 15:38:22,774 INFO : 36% Done

11 May 2020 15:38:22,957 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:22,957 INFO : Inserting KLK11

11 May 2020 15:38:23,189 INFO : 37% Done

11 May 2020 15:38:23,413 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:23,413 INFO : Inserting KLK2

11 May 2020 15:38:23,418 INFO : 38% Done

11 May 2020 15:38:23,690 INFO : 39% Done

11 May 2020 15:38:23,891 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:23,891 INFO : Inserting MMP2

11 May 2020 15:38:23,910 INFO : 40% Done

11 May 2020 15:38:24,104 INFO : 41% Done

11 May 2020 15:38:24,199 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:24,199 INFO : Inserting MMP9

11 May 2020 15:38:24,218 INFO : 42% Done

11 May 2020 15:38:24,308 INFO : 43% Done

11 May 2020 15:38:24,410 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:24,410 INFO : Inserting MUC1

11 May 2020 15:38:24,422 INFO : 44% Done

11 May 2020 15:38:24,545 INFO : 45% Done

11 May 2020 15:38:24,657 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:24,657 INFO : Inserting MUC6

11 May 2020 15:38:24,819 INFO : 46% Done

11 May 2020 15:38:24,922 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:24,922 INFO : Inserting MYC

11 May 2020 15:38:24,932 INFO : 47% Done

11 May 2020 15:38:25,028 INFO : 48% Done

11 May 2020 15:38:25,265 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:25,265 INFO : Inserting MYCN

11 May 2020 15:38:25,286 INFO : 49% Done

11 May 2020 15:38:25,552 INFO : 50% Done

11 May 2020 15:38:25,828 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:25,828 INFO : Inserting MYO6

11 May 2020 15:38:25,855 INFO : 51% Done

11 May 2020 15:38:26,055 INFO : 52% Done

11 May 2020 15:38:26,305 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:26,305 INFO : Inserting NCOA2

11 May 2020 15:38:26,328 INFO : 53% Done

11 May 2020 15:38:26,578 INFO : 54% Done

11 May 2020 15:38:26,853 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:26,853 INFO : Inserting NPY

11 May 2020 15:38:26,865 INFO : 55% Done

11 May 2020 15:38:27,089 INFO : 56% Done

11 May 2020 15:38:27,338 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:27,338 INFO : Inserting O51E2

11 May 2020 15:38:27,527 INFO : 57% Done

11 May 2020 15:38:27,738 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:27,738 INFO : Inserting OSTP

11 May 2020 15:38:27,744 INFO : 58% Done

11 May 2020 15:38:27,992 INFO : 59% Done

11 May 2020 15:38:28,124 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:28,124 INFO : Inserting P53

11 May 2020 15:38:28,136 INFO : 60% Done

11 May 2020 15:38:28,266 INFO : 61% Done

11 May 2020 15:38:28,374 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:28,374 INFO : Inserting PAFA

11 May 2020 15:38:28,448 INFO : 62% Done

11 May 2020 15:38:28,556 INFO : 63% Done

11 May 2020 15:38:28,674 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:28,674 INFO : Inserting PGFRB

11 May 2020 15:38:28,766 INFO : 64% Done

11 May 2020 15:38:28,873 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:28,873 INFO : Inserting PK3CA

11 May 2020 15:38:28,883 INFO : 65% Done

11 May 2020 15:38:28,984 INFO : 66% Done

11 May 2020 15:38:29,146 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:29,146 INFO : Inserting RAF1

11 May 2020 15:38:29,171 INFO : 67% Done

11 May 2020 15:38:29,415 INFO : 68% Done

11 May 2020 15:38:29,556 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:29,556 INFO : Inserting SERPINI1

11 May 2020 15:38:29,569 INFO : 69% Done

11 May 2020 15:38:29,670 INFO : 70% Done

11 May 2020 15:38:29,751 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:29,752 INFO : Inserting SPINK1

11 May 2020 15:38:29,765 INFO : 71% Done

11 May 2020 15:38:29,866 INFO : 72% Done

11 May 2020 15:38:29,961 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:29,961 INFO : Inserting SPRC

11 May 2020 15:38:30,149 INFO : 73% Done

11 May 2020 15:38:30,487 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:30,487 INFO : Inserting TGFB1

11 May 2020 15:38:30,517 INFO : 74% Done

11 May 2020 15:38:31,049 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:31,049 INFO : Inserting TMPS2

11 May 2020 15:38:31,060 INFO : 75% Done

11 May 2020 15:38:31,248 INFO : 76% Done

11 May 2020 15:38:31,431 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:31,431 INFO : Inserting TPM2

11 May 2020 15:38:31,445 INFO : 77% Done

11 May 2020 15:38:31,658 INFO : 78% Done

11 May 2020 15:38:31,888 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:31,888 INFO : Inserting TWST1

11 May 2020 15:38:31,925 INFO : 79% Done

11 May 2020 15:38:32,164 INFO : 80% Done

11 May 2020 15:38:32,374 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:32,374 INFO : Inserting VEGFA

11 May 2020 15:38:32,389 INFO : 81% Done

11 May 2020 15:38:32,643 INFO : 82% Done

11 May 2020 15:38:32,895 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:32,896 INFO : Inserting PSA

11 May 2020 15:38:32,922 INFO : 83% Done

11 May 2020 15:38:33,170 INFO : 84% Done

11 May 2020 15:38:33,396 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:33,397 INFO : Inserting ERG_pan

11 May 2020 15:38:33,664 INFO : 85% Done

11 May 2020 15:38:33,910 INFO : 86% Done

11 May 2020 15:38:34,177 INFO : 87% Done

11 May 2020 15:38:34,422 INFO : 88% Done

11 May 2020 15:38:34,678 INFO : 89% Done

11 May 2020 15:38:34,918 INFO : 90% Done

11 May 2020 15:38:35,158 DEBUG: Total peptides inserted: 7

11 May 2020 15:38:35,158 INFO : Inserting ETV1

11 May 2020 15:38:35,163 INFO : 91% Done

11 May 2020 15:38:35,409 INFO : 92% Done

11 May 2020 15:38:35,584 INFO : 93% Done

11 May 2020 15:38:35,674 DEBUG: Total peptides inserted: 3

11 May 2020 15:38:35,674 INFO : Inserting ERG8

11 May 2020 15:38:35,694 INFO : 94% Done

11 May 2020 15:38:35,788 INFO : 95% Done

11 May 2020 15:38:35,911 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:35,911 INFO : Inserting SMAD4

11 May 2020 15:38:36,024 INFO : 96% Done

11 May 2020 15:38:36,241 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:36,241 INFO : Inserting STAT3

11 May 2020 15:38:36,263 INFO : 97% Done

11 May 2020 15:38:36,500 INFO : 98% Done

11 May 2020 15:38:36,708 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:36,708 INFO : Done parsing Skyline document.

11 May 2020 15:38:36,710 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:38:36,831 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:38:37,349 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:38:37,612 INFO : Cleaning up temp tables

11 May 2020 15:38:38,016 INFO : Completed import of Skyline document from CPDR-FFPE-ID-326_2020-01-28_10-22-09.sky.zip

11 May 2020 15:38:38,017 INFO : 100% Done

11 May 2020 15:38:38,023 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80115/CPDR-FFPE-ID-326_2020-01-28_10-22-09.sky.zip into the system

11 May 2020 15:38:38,023 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80116/CPDR-FFPE-ID-207_2020-01-28_10-23-01/CPDR-FFPE-ID-207.skyd into the system

11 May 2020 15:38:38,024 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80116/CPDR-FFPE-ID-207_2020-01-28_10-23-01/CPDR-FFPE-ID-207.skyd into the system

11 May 2020 15:38:38,024 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80116/CPDR-FFPE-ID-207_2020-01-28_10-23-01.sky.zip into the system

11 May 2020 15:38:38,026 INFO : Starting import from CPDR-FFPE-ID-207_2020-01-28_10-23-01.sky.zip

11 May 2020 15:38:38,029 INFO : Starting to import Skyline document from CPDR-FFPE-ID-207_2020-01-28_10-23-01.sky.zip

11 May 2020 15:38:38,044 INFO : Expanding CPDR-FFPE-ID-207.skyd

11 May 2020 15:38:38,416 INFO : Expanding CPDR-FFPE-ID-207.sky.view

11 May 2020 15:38:38,417 INFO : Expanding CPDR-FFPE-ID-207.sky

11 May 2020 15:38:38,762 INFO : Inserting TFF3

11 May 2020 15:38:38,765 INFO : 1% Done

11 May 2020 15:38:38,859 INFO : 2% Done

11 May 2020 15:38:38,949 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:38,949 INFO : Inserting AKT1

11 May 2020 15:38:38,952 INFO : 3% Done

11 May 2020 15:38:39,025 INFO : 4% Done

11 May 2020 15:38:39,133 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:39,133 INFO : Inserting AMACR

11 May 2020 15:38:39,136 INFO : 5% Done

11 May 2020 15:38:39,248 INFO : 6% Done

11 May 2020 15:38:39,371 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:39,371 INFO : Inserting ANDR

11 May 2020 15:38:39,373 INFO : 7% Done

11 May 2020 15:38:39,511 INFO : 8% Done

11 May 2020 15:38:39,611 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:39,611 INFO : Inserting ANXA2

11 May 2020 15:38:39,706 INFO : 9% Done

11 May 2020 15:38:39,798 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:39,798 INFO : Inserting AURKA

11 May 2020 15:38:39,800 INFO : 10% Done

11 May 2020 15:38:39,896 INFO : 11% Done

11 May 2020 15:38:40,001 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:40,001 INFO : Inserting BRAF

11 May 2020 15:38:40,004 INFO : 12% Done

11 May 2020 15:38:40,097 INFO : 13% Done

11 May 2020 15:38:40,188 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:40,188 INFO : Inserting CAMKK2

11 May 2020 15:38:40,193 INFO : 14% Done

11 May 2020 15:38:40,310 INFO : 15% Done

11 May 2020 15:38:40,406 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:40,406 INFO : Inserting CCND1

11 May 2020 15:38:40,424 INFO : 16% Done

11 May 2020 15:38:40,618 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:40,618 INFO : Inserting CDN1A

11 May 2020 15:38:40,620 INFO : 17% Done

11 May 2020 15:38:40,709 INFO : 18% Done

11 May 2020 15:38:40,797 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:40,797 INFO : Inserting CRISP3

11 May 2020 15:38:40,799 INFO : 19% Done

11 May 2020 15:38:40,892 INFO : 20% Done

11 May 2020 15:38:40,992 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:40,992 INFO : Inserting DCOR

11 May 2020 15:38:40,995 INFO : 21% Done

11 May 2020 15:38:41,089 INFO : 22% Done

11 May 2020 15:38:41,391 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:41,392 INFO : Inserting EGFR

11 May 2020 15:38:41,395 INFO : 23% Done

11 May 2020 15:38:41,636 INFO : 24% Done

11 May 2020 15:38:41,737 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:41,737 INFO : Inserting EZH2

11 May 2020 15:38:41,739 INFO : 25% Done

11 May 2020 15:38:41,959 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:41,959 INFO : Inserting FGFR1

11 May 2020 15:38:42,064 INFO : 26% Done

11 May 2020 15:38:42,166 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:42,167 INFO : Inserting FOLH1

11 May 2020 15:38:42,169 INFO : 27% Done

11 May 2020 15:38:42,271 INFO : 28% Done

11 May 2020 15:38:42,396 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:42,396 INFO : Inserting HIF1A

11 May 2020 15:38:42,399 INFO : 29% Done

11 May 2020 15:38:42,511 INFO : 30% Done

11 May 2020 15:38:42,611 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:42,612 INFO : Inserting HPN

11 May 2020 15:38:42,614 INFO : 31% Done

11 May 2020 15:38:42,708 INFO : 32% Done

11 May 2020 15:38:42,818 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:42,819 INFO : Inserting HSPB1

11 May 2020 15:38:42,821 INFO : 33% Done

11 May 2020 15:38:42,957 INFO : 34% Done

11 May 2020 15:38:43,064 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:43,064 INFO : Inserting HXC6

11 May 2020 15:38:43,066 INFO : 35% Done

11 May 2020 15:38:43,168 INFO : 36% Done

11 May 2020 15:38:43,275 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:43,275 INFO : Inserting KLK11

11 May 2020 15:38:43,416 INFO : 37% Done

11 May 2020 15:38:43,572 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:43,572 INFO : Inserting KLK2

11 May 2020 15:38:43,575 INFO : 38% Done

11 May 2020 15:38:43,713 INFO : 39% Done

11 May 2020 15:38:43,884 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:43,884 INFO : Inserting MMP2

11 May 2020 15:38:43,888 INFO : 40% Done

11 May 2020 15:38:44,070 INFO : 41% Done

11 May 2020 15:38:44,154 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:44,155 INFO : Inserting MMP9

11 May 2020 15:38:44,157 INFO : 42% Done

11 May 2020 15:38:44,286 INFO : 43% Done

11 May 2020 15:38:44,446 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:44,447 INFO : Inserting MUC1

11 May 2020 15:38:44,450 INFO : 44% Done

11 May 2020 15:38:44,566 INFO : 45% Done

11 May 2020 15:38:44,663 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:44,663 INFO : Inserting MUC6

11 May 2020 15:38:44,779 INFO : 46% Done

11 May 2020 15:38:44,918 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:44,918 INFO : Inserting MYC

11 May 2020 15:38:44,920 INFO : 47% Done

11 May 2020 15:38:45,079 INFO : 48% Done

11 May 2020 15:38:45,185 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:45,185 INFO : Inserting MYCN

11 May 2020 15:38:45,187 INFO : 49% Done

11 May 2020 15:38:45,295 INFO : 50% Done

11 May 2020 15:38:45,454 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:45,454 INFO : Inserting MYO6

11 May 2020 15:38:45,457 INFO : 51% Done

11 May 2020 15:38:45,592 INFO : 52% Done

11 May 2020 15:38:45,712 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:45,712 INFO : Inserting NCOA2

11 May 2020 15:38:45,715 INFO : 53% Done

11 May 2020 15:38:45,820 INFO : 54% Done

11 May 2020 15:38:45,933 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:45,933 INFO : Inserting NPY

11 May 2020 15:38:45,935 INFO : 55% Done

11 May 2020 15:38:46,037 INFO : 56% Done

11 May 2020 15:38:46,138 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:46,138 INFO : Inserting O51E2

11 May 2020 15:38:46,214 INFO : 57% Done

11 May 2020 15:38:46,307 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:46,307 INFO : Inserting OSTP

11 May 2020 15:38:46,309 INFO : 58% Done

11 May 2020 15:38:46,399 INFO : 59% Done

11 May 2020 15:38:46,499 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:46,499 INFO : Inserting P53

11 May 2020 15:38:46,501 INFO : 60% Done

11 May 2020 15:38:46,588 INFO : 61% Done

11 May 2020 15:38:46,700 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:46,700 INFO : Inserting PAFA

11 May 2020 15:38:46,702 INFO : 62% Done

11 May 2020 15:38:46,811 INFO : 63% Done

11 May 2020 15:38:46,926 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:46,927 INFO : Inserting PGFRB

11 May 2020 15:38:47,013 INFO : 64% Done

11 May 2020 15:38:47,131 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:47,131 INFO : Inserting PK3CA

11 May 2020 15:38:47,133 INFO : 65% Done

11 May 2020 15:38:47,225 INFO : 66% Done

11 May 2020 15:38:47,367 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:47,367 INFO : Inserting RAF1

11 May 2020 15:38:47,370 INFO : 67% Done

11 May 2020 15:38:47,504 INFO : 68% Done

11 May 2020 15:38:47,593 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:47,594 INFO : Inserting SERPINI1

11 May 2020 15:38:47,596 INFO : 69% Done

11 May 2020 15:38:47,693 INFO : 70% Done

11 May 2020 15:38:47,788 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:47,788 INFO : Inserting SPINK1

11 May 2020 15:38:47,791 INFO : 71% Done

11 May 2020 15:38:47,892 INFO : 72% Done

11 May 2020 15:38:47,989 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:47,990 INFO : Inserting SPRC

11 May 2020 15:38:48,090 INFO : 73% Done

11 May 2020 15:38:48,185 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:48,185 INFO : Inserting TGFB1

11 May 2020 15:38:48,187 INFO : 74% Done

11 May 2020 15:38:48,385 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:48,385 INFO : Inserting TMPS2

11 May 2020 15:38:48,387 INFO : 75% Done

11 May 2020 15:38:48,483 INFO : 76% Done

11 May 2020 15:38:48,579 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:48,579 INFO : Inserting TPM2

11 May 2020 15:38:48,581 INFO : 77% Done

11 May 2020 15:38:48,683 INFO : 78% Done

11 May 2020 15:38:48,778 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:48,778 INFO : Inserting TWST1

11 May 2020 15:38:48,780 INFO : 79% Done

11 May 2020 15:38:48,877 INFO : 80% Done

11 May 2020 15:38:48,979 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:48,979 INFO : Inserting VEGFA

11 May 2020 15:38:48,981 INFO : 81% Done

11 May 2020 15:38:49,085 INFO : 82% Done

11 May 2020 15:38:49,181 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:49,182 INFO : Inserting PSA

11 May 2020 15:38:49,184 INFO : 83% Done

11 May 2020 15:38:49,384 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:49,384 INFO : 84% Done

11 May 2020 15:38:49,384 INFO : Inserting ERG_pan

11 May 2020 15:38:49,483 INFO : 85% Done

11 May 2020 15:38:49,583 INFO : 86% Done

11 May 2020 15:38:49,681 INFO : 87% Done

11 May 2020 15:38:49,777 INFO : 88% Done

11 May 2020 15:38:49,874 INFO : 89% Done

11 May 2020 15:38:49,969 INFO : 90% Done

11 May 2020 15:38:50,064 DEBUG: Total peptides inserted: 7

11 May 2020 15:38:50,064 INFO : Inserting ETV1

11 May 2020 15:38:50,066 INFO : 91% Done

11 May 2020 15:38:50,171 INFO : 92% Done

11 May 2020 15:38:50,260 INFO : 93% Done

11 May 2020 15:38:50,350 DEBUG: Total peptides inserted: 3

11 May 2020 15:38:50,350 INFO : Inserting ERG8

11 May 2020 15:38:50,352 INFO : 94% Done

11 May 2020 15:38:50,444 INFO : 95% Done

11 May 2020 15:38:50,531 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:50,531 INFO : Inserting SMAD4

11 May 2020 15:38:50,533 INFO : 96% Done

11 May 2020 15:38:50,706 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:50,707 INFO : Inserting STAT3

11 May 2020 15:38:50,709 INFO : 97% Done

11 May 2020 15:38:50,794 INFO : 98% Done

11 May 2020 15:38:50,878 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:50,878 INFO : Done parsing Skyline document.

11 May 2020 15:38:50,879 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:38:50,950 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:38:51,445 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:38:51,622 INFO : Cleaning up temp tables

11 May 2020 15:38:51,911 INFO : Completed import of Skyline document from CPDR-FFPE-ID-207_2020-01-28_10-23-01.sky.zip

11 May 2020 15:38:51,912 INFO : 100% Done

11 May 2020 15:38:51,917 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80116/CPDR-FFPE-ID-207_2020-01-28_10-23-01.sky.zip into the system

11 May 2020 15:38:51,917 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80113/CPDR-FFPE-ID-217_2020-01-28_10-20-52/CPDR-FFPE-ID-217.skyd into the system

11 May 2020 15:38:51,918 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80113/CPDR-FFPE-ID-217_2020-01-28_10-20-52/CPDR-FFPE-ID-217.skyd into the system

11 May 2020 15:38:51,918 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80113/CPDR-FFPE-ID-217_2020-01-28_10-20-52.sky.zip into the system

11 May 2020 15:38:51,920 INFO : Starting import from CPDR-FFPE-ID-217_2020-01-28_10-20-52.sky.zip

11 May 2020 15:38:51,922 INFO : Starting to import Skyline document from CPDR-FFPE-ID-217_2020-01-28_10-20-52.sky.zip

11 May 2020 15:38:51,931 INFO : Expanding CPDR-FFPE-ID-217.skyd

11 May 2020 15:38:52,225 INFO : Expanding CPDR-FFPE-ID-217.sky.view

11 May 2020 15:38:52,226 INFO : Expanding CPDR-FFPE-ID-217.sky

11 May 2020 15:38:52,880 INFO : Inserting TFF3

11 May 2020 15:38:52,886 INFO : 1% Done

11 May 2020 15:38:53,032 INFO : 2% Done

11 May 2020 15:38:53,261 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:53,261 INFO : Inserting AKT1

11 May 2020 15:38:53,265 INFO : 3% Done

11 May 2020 15:38:53,453 INFO : 4% Done

11 May 2020 15:38:53,591 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:53,591 INFO : Inserting AMACR

11 May 2020 15:38:53,593 INFO : 5% Done

11 May 2020 15:38:53,689 INFO : 6% Done

11 May 2020 15:38:53,789 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:53,789 INFO : Inserting ANDR

11 May 2020 15:38:53,791 INFO : 7% Done

11 May 2020 15:38:53,890 INFO : 8% Done

11 May 2020 15:38:54,005 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:54,005 INFO : Inserting ANXA2

11 May 2020 15:38:54,104 INFO : 9% Done

11 May 2020 15:38:54,203 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:54,203 INFO : Inserting AURKA

11 May 2020 15:38:54,205 INFO : 10% Done

11 May 2020 15:38:54,302 INFO : 11% Done

11 May 2020 15:38:54,410 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:54,410 INFO : Inserting BRAF

11 May 2020 15:38:54,413 INFO : 12% Done

11 May 2020 15:38:54,516 INFO : 13% Done

11 May 2020 15:38:54,663 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:54,663 INFO : Inserting CAMKK2

11 May 2020 15:38:54,671 INFO : 14% Done

11 May 2020 15:38:54,784 INFO : 15% Done

11 May 2020 15:38:54,884 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:54,884 INFO : Inserting CCND1

11 May 2020 15:38:54,886 INFO : 16% Done

11 May 2020 15:38:55,086 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:55,086 INFO : Inserting CDN1A

11 May 2020 15:38:55,088 INFO : 17% Done

11 May 2020 15:38:55,178 INFO : 18% Done

11 May 2020 15:38:55,270 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:55,270 INFO : Inserting CRISP3

11 May 2020 15:38:55,272 INFO : 19% Done

11 May 2020 15:38:55,362 INFO : 20% Done

11 May 2020 15:38:55,454 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:55,454 INFO : Inserting DCOR

11 May 2020 15:38:55,457 INFO : 21% Done

11 May 2020 15:38:55,558 INFO : 22% Done

11 May 2020 15:38:55,678 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:55,678 INFO : Inserting EGFR

11 May 2020 15:38:55,680 INFO : 23% Done

11 May 2020 15:38:55,775 INFO : 24% Done

11 May 2020 15:38:55,846 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:55,846 INFO : Inserting EZH2

11 May 2020 15:38:55,848 INFO : 25% Done

11 May 2020 15:38:56,023 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:56,023 INFO : Inserting FGFR1

11 May 2020 15:38:56,118 INFO : 26% Done

11 May 2020 15:38:56,205 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:56,205 INFO : Inserting FOLH1

11 May 2020 15:38:56,207 INFO : 27% Done

11 May 2020 15:38:56,296 INFO : 28% Done

11 May 2020 15:38:56,406 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:56,406 INFO : Inserting HIF1A

11 May 2020 15:38:56,408 INFO : 29% Done

11 May 2020 15:38:56,534 INFO : 30% Done

11 May 2020 15:38:56,659 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:56,659 INFO : Inserting HPN

11 May 2020 15:38:56,661 INFO : 31% Done

11 May 2020 15:38:56,753 INFO : 32% Done

11 May 2020 15:38:56,861 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:56,862 INFO : Inserting HSPB1

11 May 2020 15:38:56,864 INFO : 33% Done

11 May 2020 15:38:56,970 INFO : 34% Done

11 May 2020 15:38:57,567 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:57,567 INFO : Inserting HXC6

11 May 2020 15:38:57,570 INFO : 35% Done

11 May 2020 15:38:57,662 INFO : 36% Done

11 May 2020 15:38:57,747 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:57,747 INFO : Inserting KLK11

11 May 2020 15:38:57,836 INFO : 37% Done

11 May 2020 15:38:57,927 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:57,928 INFO : Inserting KLK2

11 May 2020 15:38:57,930 INFO : 38% Done

11 May 2020 15:38:58,014 INFO : 39% Done

11 May 2020 15:38:58,104 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:58,104 INFO : Inserting MMP2

11 May 2020 15:38:58,106 INFO : 40% Done

11 May 2020 15:38:58,201 INFO : 41% Done

11 May 2020 15:38:58,273 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:58,273 INFO : Inserting MMP9

11 May 2020 15:38:58,275 INFO : 42% Done

11 May 2020 15:38:58,367 INFO : 43% Done

11 May 2020 15:38:58,477 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:58,478 INFO : Inserting MUC1

11 May 2020 15:38:58,480 INFO : 44% Done

11 May 2020 15:38:58,661 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:58,661 INFO : Inserting MUC6

11 May 2020 15:38:58,663 INFO : 45% Done

11 May 2020 15:38:58,757 INFO : 46% Done

11 May 2020 15:38:58,846 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:58,847 INFO : Inserting MYC

11 May 2020 15:38:58,849 INFO : 47% Done

11 May 2020 15:38:58,954 INFO : 48% Done

11 May 2020 15:38:59,053 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:59,054 INFO : Inserting MYCN

11 May 2020 15:38:59,056 INFO : 49% Done

11 May 2020 15:38:59,146 INFO : 50% Done

11 May 2020 15:38:59,240 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:59,240 INFO : Inserting MYO6

11 May 2020 15:38:59,242 INFO : 51% Done

11 May 2020 15:38:59,329 INFO : 52% Done

11 May 2020 15:38:59,413 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:59,413 INFO : Inserting NCOA2

11 May 2020 15:38:59,415 INFO : 53% Done

11 May 2020 15:38:59,503 INFO : 54% Done

11 May 2020 15:38:59,632 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:59,633 INFO : Inserting NPY

11 May 2020 15:38:59,635 INFO : 55% Done

11 May 2020 15:38:59,723 INFO : 56% Done

11 May 2020 15:38:59,811 DEBUG: Total peptides inserted: 2

11 May 2020 15:38:59,811 INFO : Inserting O51E2

11 May 2020 15:38:59,884 INFO : 57% Done

11 May 2020 15:39:00,028 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:00,028 INFO : Inserting OSTP

11 May 2020 15:39:00,030 INFO : 58% Done

11 May 2020 15:39:00,194 INFO : 59% Done

11 May 2020 15:39:00,296 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:00,296 INFO : Inserting P53

11 May 2020 15:39:00,298 INFO : 60% Done

11 May 2020 15:39:00,387 INFO : 61% Done

11 May 2020 15:39:00,514 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:00,514 INFO : Inserting PAFA

11 May 2020 15:39:00,516 INFO : 62% Done

11 May 2020 15:39:00,722 INFO : 63% Done

11 May 2020 15:39:00,928 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:00,928 INFO : Inserting PGFRB

11 May 2020 15:39:01,070 INFO : 64% Done

11 May 2020 15:39:01,157 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:01,157 INFO : Inserting PK3CA

11 May 2020 15:39:01,159 INFO : 65% Done

11 May 2020 15:39:01,246 INFO : 66% Done

11 May 2020 15:39:01,332 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:01,332 INFO : Inserting RAF1

11 May 2020 15:39:01,334 INFO : 67% Done

11 May 2020 15:39:01,443 INFO : 68% Done

11 May 2020 15:39:01,525 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:01,525 INFO : Inserting SERPINI1

11 May 2020 15:39:01,528 INFO : 69% Done

11 May 2020 15:39:01,665 INFO : 70% Done

11 May 2020 15:39:01,761 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:01,761 INFO : Inserting SPINK1

11 May 2020 15:39:01,763 INFO : 71% Done

11 May 2020 15:39:01,887 INFO : 72% Done

11 May 2020 15:39:01,984 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:01,984 INFO : Inserting SPRC

11 May 2020 15:39:02,082 INFO : 73% Done

11 May 2020 15:39:02,190 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:02,191 INFO : Inserting TGFB1

11 May 2020 15:39:02,193 INFO : 74% Done

11 May 2020 15:39:02,401 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:02,401 INFO : Inserting TMPS2

11 May 2020 15:39:02,403 INFO : 75% Done

11 May 2020 15:39:02,490 INFO : 76% Done

11 May 2020 15:39:02,575 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:02,575 INFO : Inserting TPM2

11 May 2020 15:39:02,577 INFO : 77% Done

11 May 2020 15:39:02,668 INFO : 78% Done

11 May 2020 15:39:02,758 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:02,758 INFO : Inserting TWST1

11 May 2020 15:39:02,760 INFO : 79% Done

11 May 2020 15:39:02,846 INFO : 80% Done

11 May 2020 15:39:02,943 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:02,943 INFO : Inserting VEGFA

11 May 2020 15:39:02,945 INFO : 81% Done

11 May 2020 15:39:03,032 INFO : 82% Done

11 May 2020 15:39:03,122 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:03,122 INFO : Inserting PSA

11 May 2020 15:39:03,124 INFO : 83% Done

11 May 2020 15:39:03,340 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:03,340 INFO : Inserting ERG_pan

11 May 2020 15:39:03,342 INFO : 84% Done

11 May 2020 15:39:03,484 INFO : 85% Done

11 May 2020 15:39:03,588 INFO : 86% Done

11 May 2020 15:39:03,677 INFO : 87% Done

11 May 2020 15:39:03,769 INFO : 88% Done

11 May 2020 15:39:03,878 INFO : 89% Done

11 May 2020 15:39:03,982 INFO : 90% Done

11 May 2020 15:39:04,071 DEBUG: Total peptides inserted: 7

11 May 2020 15:39:04,071 INFO : Inserting ETV1

11 May 2020 15:39:04,078 INFO : 91% Done

11 May 2020 15:39:04,178 INFO : 92% Done

11 May 2020 15:39:04,286 INFO : 93% Done

11 May 2020 15:39:04,388 DEBUG: Total peptides inserted: 3

11 May 2020 15:39:04,388 INFO : Inserting ERG8

11 May 2020 15:39:04,390 INFO : 94% Done

11 May 2020 15:39:04,500 INFO : 95% Done

11 May 2020 15:39:04,609 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:04,609 INFO : Inserting SMAD4

11 May 2020 15:39:04,706 INFO : 96% Done

11 May 2020 15:39:04,801 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:04,801 INFO : Inserting STAT3

11 May 2020 15:39:04,804 INFO : 97% Done

11 May 2020 15:39:04,894 INFO : 98% Done

11 May 2020 15:39:04,982 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:04,982 INFO : Done parsing Skyline document.

11 May 2020 15:39:04,983 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:39:05,075 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:39:05,644 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:39:05,912 INFO : Cleaning up temp tables

11 May 2020 15:39:06,250 INFO : Completed import of Skyline document from CPDR-FFPE-ID-217_2020-01-28_10-20-52.sky.zip

11 May 2020 15:39:06,251 INFO : 100% Done

11 May 2020 15:39:06,275 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80113/CPDR-FFPE-ID-217_2020-01-28_10-20-52.sky.zip into the system

11 May 2020 15:39:06,275 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80111/CPDR-FFPE-ID-307_2020-01-28_10-19-35/CPDR-FFPE-ID-307.skyd into the system

11 May 2020 15:39:06,276 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80111/CPDR-FFPE-ID-307_2020-01-28_10-19-35/CPDR-FFPE-ID-307.skyd into the system

11 May 2020 15:39:06,276 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80111/CPDR-FFPE-ID-307_2020-01-28_10-19-35.sky.zip into the system

11 May 2020 15:39:06,278 INFO : Starting import from CPDR-FFPE-ID-307_2020-01-28_10-19-35.sky.zip

11 May 2020 15:39:06,282 INFO : Starting to import Skyline document from CPDR-FFPE-ID-307_2020-01-28_10-19-35.sky.zip

11 May 2020 15:39:06,291 INFO : Expanding CPDR-FFPE-ID-307.skyd

11 May 2020 15:39:06,485 INFO : Expanding CPDR-FFPE-ID-307.sky.view

11 May 2020 15:39:06,485 INFO : Expanding CPDR-FFPE-ID-307.sky

11 May 2020 15:39:06,922 INFO : Inserting TFF3

11 May 2020 15:39:06,927 INFO : 1% Done

11 May 2020 15:39:07,029 INFO : 2% Done

11 May 2020 15:39:07,131 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:07,131 INFO : Inserting AKT1

11 May 2020 15:39:07,133 INFO : 3% Done

11 May 2020 15:39:07,213 INFO : 4% Done

11 May 2020 15:39:07,313 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:07,313 INFO : Inserting AMACR

11 May 2020 15:39:07,315 INFO : 5% Done

11 May 2020 15:39:07,429 INFO : 6% Done

11 May 2020 15:39:07,551 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:07,552 INFO : Inserting ANDR

11 May 2020 15:39:07,554 INFO : 7% Done

11 May 2020 15:39:07,685 INFO : 8% Done

11 May 2020 15:39:07,785 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:07,785 INFO : Inserting ANXA2

11 May 2020 15:39:07,911 INFO : 9% Done

11 May 2020 15:39:08,007 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:08,007 INFO : Inserting AURKA

11 May 2020 15:39:08,010 INFO : 10% Done

11 May 2020 15:39:08,139 INFO : 11% Done

11 May 2020 15:39:08,257 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:08,257 INFO : Inserting BRAF

11 May 2020 15:39:08,259 INFO : 12% Done

11 May 2020 15:39:08,365 INFO : 13% Done

11 May 2020 15:39:08,506 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:08,506 INFO : Inserting CAMKK2

11 May 2020 15:39:08,509 INFO : 14% Done

11 May 2020 15:39:08,687 INFO : 15% Done

11 May 2020 15:39:08,910 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:08,911 INFO : Inserting CCND1

11 May 2020 15:39:08,915 INFO : 16% Done

11 May 2020 15:39:09,156 INFO : 17% Done

11 May 2020 15:39:09,327 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:09,327 INFO : Inserting CDN1A

11 May 2020 15:39:09,521 INFO : 18% Done

11 May 2020 15:39:09,638 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:09,638 INFO : Inserting CRISP3

11 May 2020 15:39:09,640 INFO : 19% Done

11 May 2020 15:39:09,740 INFO : 20% Done

11 May 2020 15:39:09,844 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:09,844 INFO : Inserting DCOR

11 May 2020 15:39:09,846 INFO : 21% Done

11 May 2020 15:39:09,944 INFO : 22% Done

11 May 2020 15:39:10,052 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:10,052 INFO : Inserting EGFR

11 May 2020 15:39:10,054 INFO : 23% Done

11 May 2020 15:39:10,160 INFO : 24% Done

11 May 2020 15:39:10,239 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:10,239 INFO : Inserting EZH2

11 May 2020 15:39:10,241 INFO : 25% Done

11 May 2020 15:39:10,438 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:10,439 INFO : Inserting FGFR1

11 May 2020 15:39:10,544 INFO : 26% Done

11 May 2020 15:39:10,643 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:10,643 INFO : Inserting FOLH1

11 May 2020 15:39:10,645 INFO : 27% Done

11 May 2020 15:39:10,791 INFO : 28% Done

11 May 2020 15:39:10,918 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:10,918 INFO : Inserting HIF1A

11 May 2020 15:39:10,920 INFO : 29% Done

11 May 2020 15:39:11,009 INFO : 30% Done

11 May 2020 15:39:11,102 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:11,102 INFO : Inserting HPN

11 May 2020 15:39:11,104 INFO : 31% Done

11 May 2020 15:39:11,205 INFO : 32% Done

11 May 2020 15:39:11,300 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:11,300 INFO : Inserting HSPB1

11 May 2020 15:39:11,302 INFO : 33% Done

11 May 2020 15:39:11,391 INFO : 34% Done

11 May 2020 15:39:11,477 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:11,478 INFO : Inserting HXC6

11 May 2020 15:39:11,480 INFO : 35% Done

11 May 2020 15:39:11,569 INFO : 36% Done

11 May 2020 15:39:11,655 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:11,655 INFO : Inserting KLK11

11 May 2020 15:39:11,657 INFO : 37% Done

11 May 2020 15:39:11,845 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:11,845 INFO : Inserting KLK2

11 May 2020 15:39:11,847 INFO : 38% Done

11 May 2020 15:39:11,935 INFO : 39% Done

11 May 2020 15:39:12,023 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:12,023 INFO : Inserting MMP2

11 May 2020 15:39:12,025 INFO : 40% Done

11 May 2020 15:39:12,113 INFO : 41% Done

11 May 2020 15:39:12,192 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:12,192 INFO : Inserting MMP9

11 May 2020 15:39:12,194 INFO : 42% Done

11 May 2020 15:39:12,283 INFO : 43% Done

11 May 2020 15:39:12,371 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:12,371 INFO : Inserting MUC1

11 May 2020 15:39:12,373 INFO : 44% Done

11 May 2020 15:39:12,464 INFO : 45% Done

11 May 2020 15:39:12,556 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:12,556 INFO : Inserting MUC6

11 May 2020 15:39:12,647 INFO : 46% Done

11 May 2020 15:39:12,733 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:12,733 INFO : Inserting MYC

11 May 2020 15:39:12,735 INFO : 47% Done

11 May 2020 15:39:12,823 INFO : 48% Done

11 May 2020 15:39:12,910 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:12,910 INFO : Inserting MYCN

11 May 2020 15:39:12,912 INFO : 49% Done

11 May 2020 15:39:13,001 INFO : 50% Done

11 May 2020 15:39:13,097 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:13,098 INFO : Inserting MYO6

11 May 2020 15:39:13,099 INFO : 51% Done

11 May 2020 15:39:13,186 INFO : 52% Done

11 May 2020 15:39:13,276 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:13,277 INFO : Inserting NCOA2

11 May 2020 15:39:13,279 INFO : 53% Done

11 May 2020 15:39:13,397 INFO : 54% Done

11 May 2020 15:39:13,494 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:13,495 INFO : Inserting NPY

11 May 2020 15:39:13,497 INFO : 55% Done

11 May 2020 15:39:13,604 INFO : 56% Done

11 May 2020 15:39:13,703 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:13,703 INFO : Inserting O51E2

11 May 2020 15:39:13,785 INFO : 57% Done

11 May 2020 15:39:13,881 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:13,881 INFO : Inserting OSTP

11 May 2020 15:39:13,885 INFO : 58% Done

11 May 2020 15:39:13,982 INFO : 59% Done

11 May 2020 15:39:14,085 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:14,086 INFO : Inserting P53

11 May 2020 15:39:14,088 INFO : 60% Done

11 May 2020 15:39:14,179 INFO : 61% Done

11 May 2020 15:39:14,267 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:14,268 INFO : Inserting PAFA

11 May 2020 15:39:14,270 INFO : 62% Done

11 May 2020 15:39:14,375 INFO : 63% Done

11 May 2020 15:39:14,464 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:14,464 INFO : Inserting PGFRB

11 May 2020 15:39:14,537 INFO : 64% Done

11 May 2020 15:39:14,622 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:14,622 INFO : Inserting PK3CA

11 May 2020 15:39:14,624 INFO : 65% Done

11 May 2020 15:39:14,718 INFO : 66% Done

11 May 2020 15:39:14,803 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:14,804 INFO : Inserting RAF1

11 May 2020 15:39:14,806 INFO : 67% Done

11 May 2020 15:39:14,892 INFO : 68% Done

11 May 2020 15:39:14,979 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:14,979 INFO : Inserting SERPINI1

11 May 2020 15:39:14,981 INFO : 69% Done

11 May 2020 15:39:15,070 INFO : 70% Done

11 May 2020 15:39:15,156 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:15,157 INFO : Inserting SPINK1

11 May 2020 15:39:15,159 INFO : 71% Done

11 May 2020 15:39:15,249 INFO : 72% Done

11 May 2020 15:39:15,352 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:15,352 INFO : Inserting SPRC

11 May 2020 15:39:15,450 INFO : 73% Done

11 May 2020 15:39:15,535 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:15,535 INFO : Inserting TGFB1

11 May 2020 15:39:15,537 INFO : 74% Done

11 May 2020 15:39:15,722 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:15,723 INFO : Inserting TMPS2

11 May 2020 15:39:15,724 INFO : 75% Done

11 May 2020 15:39:15,811 INFO : 76% Done

11 May 2020 15:39:15,914 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:15,915 INFO : Inserting TPM2

11 May 2020 15:39:15,917 INFO : 77% Done

11 May 2020 15:39:16,004 INFO : 78% Done

11 May 2020 15:39:16,167 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:16,168 INFO : Inserting TWST1

11 May 2020 15:39:16,172 INFO : 79% Done

11 May 2020 15:39:16,371 INFO : 80% Done

11 May 2020 15:39:16,583 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:16,583 INFO : Inserting VEGFA

11 May 2020 15:39:16,587 INFO : 81% Done

11 May 2020 15:39:16,790 INFO : 82% Done

11 May 2020 15:39:16,938 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:16,938 INFO : Inserting PSA

11 May 2020 15:39:16,942 INFO : 83% Done

11 May 2020 15:39:17,175 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:17,176 INFO : Inserting ERG_pan

11 May 2020 15:39:17,180 INFO : 84% Done

11 May 2020 15:39:17,297 INFO : 85% Done

11 May 2020 15:39:17,438 INFO : 86% Done

11 May 2020 15:39:17,557 INFO : 87% Done

11 May 2020 15:39:17,675 INFO : 88% Done

11 May 2020 15:39:17,809 INFO : 89% Done

11 May 2020 15:39:17,926 INFO : 90% Done

11 May 2020 15:39:18,040 DEBUG: Total peptides inserted: 7

11 May 2020 15:39:18,040 INFO : Inserting ETV1

11 May 2020 15:39:18,044 INFO : 91% Done

11 May 2020 15:39:18,162 INFO : 92% Done

11 May 2020 15:39:18,289 INFO : 93% Done

11 May 2020 15:39:18,404 DEBUG: Total peptides inserted: 3

11 May 2020 15:39:18,404 INFO : Inserting ERG8

11 May 2020 15:39:18,408 INFO : 94% Done

11 May 2020 15:39:18,529 INFO : 95% Done

11 May 2020 15:39:18,646 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:18,646 INFO : Inserting SMAD4

11 May 2020 15:39:18,772 INFO : 96% Done

11 May 2020 15:39:18,865 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:18,865 INFO : Inserting STAT3

11 May 2020 15:39:18,869 INFO : 97% Done

11 May 2020 15:39:18,986 INFO : 98% Done

11 May 2020 15:39:19,150 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:19,150 INFO : Done parsing Skyline document.

11 May 2020 15:39:19,152 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:39:19,227 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:39:19,687 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:39:19,904 INFO : Cleaning up temp tables

11 May 2020 15:39:19,914 INFO : Completed import of Skyline document from CPDR-FFPE-ID-307_2020-01-28_10-19-35.sky.zip

11 May 2020 15:39:19,915 INFO : 100% Done

11 May 2020 15:39:19,924 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80111/CPDR-FFPE-ID-307_2020-01-28_10-19-35.sky.zip into the system

11 May 2020 15:39:19,924 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80134/CPDR-FFPE-ID-271_2020-01-28_10-31-13/CPDR-FFPE-ID-271.skyd into the system

11 May 2020 15:39:19,925 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80134/CPDR-FFPE-ID-271_2020-01-28_10-31-13/CPDR-FFPE-ID-271.skyd into the system

11 May 2020 15:39:19,925 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80134/CPDR-FFPE-ID-271_2020-01-28_10-31-13.sky.zip into the system

11 May 2020 15:39:19,927 INFO : Starting import from CPDR-FFPE-ID-271_2020-01-28_10-31-13.sky.zip

11 May 2020 15:39:19,931 INFO : Starting to import Skyline document from CPDR-FFPE-ID-271_2020-01-28_10-31-13.sky.zip

11 May 2020 15:39:19,941 INFO : Expanding CPDR-FFPE-ID-271.skyd

11 May 2020 15:39:20,138 INFO : Expanding CPDR-FFPE-ID-271.sky.view

11 May 2020 15:39:20,138 INFO : Expanding CPDR-FFPE-ID-271.sky

11 May 2020 15:39:20,596 INFO : Inserting TFF3

11 May 2020 15:39:20,600 INFO : 1% Done

11 May 2020 15:39:20,687 INFO : 2% Done

11 May 2020 15:39:20,769 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:20,769 INFO : Inserting AKT1

11 May 2020 15:39:20,782 INFO : 3% Done

11 May 2020 15:39:20,849 INFO : 4% Done

11 May 2020 15:39:20,931 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:20,931 INFO : Inserting AMACR

11 May 2020 15:39:20,933 INFO : 5% Done

11 May 2020 15:39:21,017 INFO : 6% Done

11 May 2020 15:39:21,101 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:21,101 INFO : Inserting ANDR

11 May 2020 15:39:21,103 INFO : 7% Done

11 May 2020 15:39:21,190 INFO : 8% Done

11 May 2020 15:39:21,291 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:21,291 INFO : Inserting ANXA2

11 May 2020 15:39:21,387 INFO : 9% Done

11 May 2020 15:39:21,478 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:21,478 INFO : Inserting AURKA

11 May 2020 15:39:21,480 INFO : 10% Done

11 May 2020 15:39:21,572 INFO : 11% Done

11 May 2020 15:39:21,663 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:21,663 INFO : Inserting BRAF

11 May 2020 15:39:21,665 INFO : 12% Done

11 May 2020 15:39:21,757 INFO : 13% Done

11 May 2020 15:39:21,848 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:21,848 INFO : Inserting CAMKK2

11 May 2020 15:39:21,850 INFO : 14% Done

11 May 2020 15:39:21,942 INFO : 15% Done

11 May 2020 15:39:22,033 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:22,033 INFO : Inserting CCND1

11 May 2020 15:39:22,035 INFO : 16% Done

11 May 2020 15:39:22,204 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:22,204 INFO : Inserting CDN1A

11 May 2020 15:39:22,206 INFO : 17% Done

11 May 2020 15:39:22,306 INFO : 18% Done

11 May 2020 15:39:22,424 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:22,424 INFO : Inserting CRISP3

11 May 2020 15:39:22,426 INFO : 19% Done

11 May 2020 15:39:22,520 INFO : 20% Done

11 May 2020 15:39:22,612 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:22,613 INFO : Inserting DCOR

11 May 2020 15:39:22,614 INFO : 21% Done

11 May 2020 15:39:22,707 INFO : 22% Done

11 May 2020 15:39:22,799 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:22,799 INFO : Inserting EGFR

11 May 2020 15:39:22,801 INFO : 23% Done

11 May 2020 15:39:23,239 INFO : 24% Done

11 May 2020 15:39:23,314 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:23,314 INFO : Inserting EZH2

11 May 2020 15:39:23,329 INFO : 25% Done

11 May 2020 15:39:23,514 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:23,514 INFO : Inserting FGFR1

11 May 2020 15:39:23,611 INFO : 26% Done

11 May 2020 15:39:23,713 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:23,713 INFO : Inserting FOLH1

11 May 2020 15:39:23,716 INFO : 27% Done

11 May 2020 15:39:23,847 INFO : 28% Done

11 May 2020 15:39:23,944 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:23,944 INFO : Inserting HIF1A

11 May 2020 15:39:23,947 INFO : 29% Done

11 May 2020 15:39:24,082 INFO : 30% Done

11 May 2020 15:39:24,196 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:24,197 INFO : Inserting HPN

11 May 2020 15:39:24,201 INFO : 31% Done

11 May 2020 15:39:24,319 INFO : 32% Done

11 May 2020 15:39:24,440 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:24,440 INFO : Inserting HSPB1

11 May 2020 15:39:24,444 INFO : 33% Done

11 May 2020 15:39:24,610 INFO : 34% Done

11 May 2020 15:39:24,743 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:24,743 INFO : Inserting HXC6

11 May 2020 15:39:24,747 INFO : 35% Done

11 May 2020 15:39:24,865 INFO : 36% Done

11 May 2020 15:39:24,980 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:24,980 INFO : Inserting KLK11

11 May 2020 15:39:25,102 INFO : 37% Done

11 May 2020 15:39:25,221 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:25,222 INFO : Inserting KLK2

11 May 2020 15:39:25,226 INFO : 38% Done

11 May 2020 15:39:25,341 INFO : 39% Done

11 May 2020 15:39:25,464 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:25,464 INFO : Inserting MMP2

11 May 2020 15:39:25,468 INFO : 40% Done

11 May 2020 15:39:25,573 INFO : 41% Done

11 May 2020 15:39:25,645 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:25,645 INFO : Inserting MMP9

11 May 2020 15:39:25,647 INFO : 42% Done

11 May 2020 15:39:25,753 INFO : 43% Done

11 May 2020 15:39:25,842 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:25,842 INFO : Inserting MUC1

11 May 2020 15:39:25,844 INFO : 44% Done

11 May 2020 15:39:25,937 INFO : 45% Done

11 May 2020 15:39:26,025 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:26,025 INFO : Inserting MUC6

11 May 2020 15:39:26,027 INFO : 46% Done

11 May 2020 15:39:26,255 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:26,255 INFO : Inserting MYC

11 May 2020 15:39:26,259 INFO : 47% Done

11 May 2020 15:39:26,377 INFO : 48% Done

11 May 2020 15:39:26,490 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:26,491 INFO : Inserting MYCN

11 May 2020 15:39:26,495 INFO : 49% Done

11 May 2020 15:39:26,612 INFO : 50% Done

11 May 2020 15:39:26,724 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:26,725 INFO : Inserting MYO6

11 May 2020 15:39:26,729 INFO : 51% Done

11 May 2020 15:39:26,844 INFO : 52% Done

11 May 2020 15:39:26,957 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:26,958 INFO : Inserting NCOA2

11 May 2020 15:39:26,962 INFO : 53% Done

11 May 2020 15:39:27,077 INFO : 54% Done

11 May 2020 15:39:27,236 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:27,236 INFO : Inserting NPY

11 May 2020 15:39:27,240 INFO : 55% Done

11 May 2020 15:39:27,357 INFO : 56% Done

11 May 2020 15:39:27,482 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:27,482 INFO : Inserting O51E2

11 May 2020 15:39:27,583 INFO : 57% Done

11 May 2020 15:39:27,697 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:27,697 INFO : Inserting OSTP

11 May 2020 15:39:27,701 INFO : 58% Done

11 May 2020 15:39:27,819 INFO : 59% Done

11 May 2020 15:39:27,947 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:27,947 INFO : Inserting P53

11 May 2020 15:39:27,952 INFO : 60% Done

11 May 2020 15:39:28,067 INFO : 61% Done

11 May 2020 15:39:28,175 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:28,175 INFO : Inserting PAFA

11 May 2020 15:39:28,179 INFO : 62% Done

11 May 2020 15:39:28,291 INFO : 63% Done

11 May 2020 15:39:29,091 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:29,092 INFO : Inserting PGFRB

11 May 2020 15:39:29,173 INFO : 64% Done

11 May 2020 15:39:29,267 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:29,267 INFO : Inserting PK3CA

11 May 2020 15:39:29,269 INFO : 65% Done

11 May 2020 15:39:29,365 INFO : 66% Done

11 May 2020 15:39:29,461 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:29,461 INFO : Inserting RAF1

11 May 2020 15:39:29,464 INFO : 67% Done

11 May 2020 15:39:29,564 INFO : 68% Done

11 May 2020 15:39:29,642 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:29,642 INFO : Inserting SERPINI1

11 May 2020 15:39:29,645 INFO : 69% Done

11 May 2020 15:39:29,771 INFO : 70% Done

11 May 2020 15:39:29,869 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:29,869 INFO : Inserting SPINK1

11 May 2020 15:39:29,872 INFO : 71% Done

11 May 2020 15:39:29,974 INFO : 72% Done

11 May 2020 15:39:30,082 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:30,082 INFO : Inserting SPRC

11 May 2020 15:39:30,234 INFO : 73% Done

11 May 2020 15:39:30,352 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:30,352 INFO : Inserting TGFB1

11 May 2020 15:39:30,356 INFO : 74% Done

11 May 2020 15:39:30,592 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:30,592 INFO : Inserting TMPS2

11 May 2020 15:39:30,596 INFO : 75% Done

11 May 2020 15:39:30,717 INFO : 76% Done

11 May 2020 15:39:30,835 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:30,835 INFO : Inserting TPM2

11 May 2020 15:39:30,839 INFO : 77% Done

11 May 2020 15:39:30,958 INFO : 78% Done

11 May 2020 15:39:31,074 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:31,075 INFO : Inserting TWST1

11 May 2020 15:39:31,079 INFO : 79% Done

11 May 2020 15:39:31,197 INFO : 80% Done

11 May 2020 15:39:31,312 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:31,312 INFO : Inserting VEGFA

11 May 2020 15:39:31,316 INFO : 81% Done

11 May 2020 15:39:31,435 INFO : 82% Done

11 May 2020 15:39:31,554 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:31,554 INFO : Inserting PSA

11 May 2020 15:39:31,558 INFO : 83% Done

11 May 2020 15:39:31,786 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:31,786 INFO : Inserting ERG_pan

11 May 2020 15:39:31,790 INFO : 84% Done

11 May 2020 15:39:31,925 INFO : 85% Done

11 May 2020 15:39:32,050 INFO : 86% Done

11 May 2020 15:39:32,170 INFO : 87% Done

11 May 2020 15:39:32,289 INFO : 88% Done

11 May 2020 15:39:32,410 INFO : 89% Done

11 May 2020 15:39:32,530 INFO : 90% Done

11 May 2020 15:39:32,647 DEBUG: Total peptides inserted: 7

11 May 2020 15:39:32,647 INFO : Inserting ETV1

11 May 2020 15:39:32,651 INFO : 91% Done

11 May 2020 15:39:32,770 INFO : 92% Done

11 May 2020 15:39:32,889 INFO : 93% Done

11 May 2020 15:39:33,004 DEBUG: Total peptides inserted: 3

11 May 2020 15:39:33,004 INFO : Inserting ERG8

11 May 2020 15:39:33,008 INFO : 94% Done

11 May 2020 15:39:33,127 INFO : 95% Done

11 May 2020 15:39:33,254 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:33,254 INFO : Inserting SMAD4

11 May 2020 15:39:33,379 INFO : 96% Done

11 May 2020 15:39:33,473 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:33,473 INFO : Inserting STAT3

11 May 2020 15:39:33,477 INFO : 97% Done

11 May 2020 15:39:33,599 INFO : 98% Done

11 May 2020 15:39:33,729 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:33,730 INFO : Done parsing Skyline document.

11 May 2020 15:39:33,731 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:39:33,796 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:39:34,768 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:39:35,082 INFO : Cleaning up temp tables

11 May 2020 15:39:35,399 INFO : Completed import of Skyline document from CPDR-FFPE-ID-271_2020-01-28_10-31-13.sky.zip

11 May 2020 15:39:35,400 INFO : 100% Done

11 May 2020 15:39:35,406 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80134/CPDR-FFPE-ID-271_2020-01-28_10-31-13.sky.zip into the system

11 May 2020 15:39:35,406 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80127/CPDR-FFPE-ID-282_2020-01-28_10-26-46/CPDR-FFPE-ID-282.skyd into the system

11 May 2020 15:39:35,407 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80127/CPDR-FFPE-ID-282_2020-01-28_10-26-46/CPDR-FFPE-ID-282.skyd into the system

11 May 2020 15:39:35,407 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80127/CPDR-FFPE-ID-282_2020-01-28_10-26-46.sky.zip into the system

11 May 2020 15:39:35,408 INFO : Starting import from CPDR-FFPE-ID-282_2020-01-28_10-26-46.sky.zip

11 May 2020 15:39:35,411 INFO : Starting to import Skyline document from CPDR-FFPE-ID-282_2020-01-28_10-26-46.sky.zip

11 May 2020 15:39:35,420 INFO : Expanding CPDR-FFPE-ID-282.skyd

11 May 2020 15:39:35,700 INFO : Expanding CPDR-FFPE-ID-282.sky.view

11 May 2020 15:39:35,701 INFO : Expanding CPDR-FFPE-ID-282.sky

11 May 2020 15:39:36,209 INFO : Inserting TFF3

11 May 2020 15:39:36,214 INFO : 1% Done

11 May 2020 15:39:36,363 INFO : 2% Done

11 May 2020 15:39:36,462 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:36,462 INFO : Inserting AKT1

11 May 2020 15:39:36,463 INFO : 3% Done

11 May 2020 15:39:36,548 INFO : 4% Done

11 May 2020 15:39:36,665 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:36,665 INFO : Inserting AMACR

11 May 2020 15:39:36,669 INFO : 5% Done

11 May 2020 15:39:36,788 INFO : 6% Done

11 May 2020 15:39:36,906 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:36,907 INFO : Inserting ANDR

11 May 2020 15:39:36,911 INFO : 7% Done

11 May 2020 15:39:37,030 INFO : 8% Done

11 May 2020 15:39:37,147 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:37,147 INFO : Inserting ANXA2

11 May 2020 15:39:37,317 INFO : 9% Done

11 May 2020 15:39:37,517 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:37,517 INFO : Inserting AURKA

11 May 2020 15:39:37,521 INFO : 10% Done

11 May 2020 15:39:37,724 INFO : 11% Done

11 May 2020 15:39:37,927 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:37,927 INFO : Inserting BRAF

11 May 2020 15:39:37,932 INFO : 12% Done

11 May 2020 15:39:38,135 INFO : 13% Done

11 May 2020 15:39:38,334 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:38,334 INFO : Inserting CAMKK2

11 May 2020 15:39:38,339 INFO : 14% Done

11 May 2020 15:39:38,546 INFO : 15% Done

11 May 2020 15:39:38,745 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:38,745 INFO : Inserting CCND1

11 May 2020 15:39:38,749 INFO : 16% Done

11 May 2020 15:39:38,952 INFO : 17% Done

11 May 2020 15:39:39,116 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:39,116 INFO : Inserting CDN1A

11 May 2020 15:39:39,327 INFO : 18% Done

11 May 2020 15:39:39,528 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:39,529 INFO : Inserting CRISP3

11 May 2020 15:39:39,533 INFO : 19% Done

11 May 2020 15:39:39,762 INFO : 20% Done

11 May 2020 15:39:39,962 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:39,962 INFO : Inserting DCOR

11 May 2020 15:39:39,966 INFO : 21% Done

11 May 2020 15:39:40,170 INFO : 22% Done

11 May 2020 15:39:40,371 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:40,371 INFO : Inserting EGFR

11 May 2020 15:39:40,375 INFO : 23% Done

11 May 2020 15:39:40,579 INFO : 24% Done

11 May 2020 15:39:40,739 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:40,739 INFO : Inserting EZH2

11 May 2020 15:39:40,743 INFO : 25% Done

11 May 2020 15:39:41,151 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:41,151 INFO : Inserting FGFR1

11 May 2020 15:39:41,358 INFO : 26% Done

11 May 2020 15:39:41,558 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:41,558 INFO : Inserting FOLH1

11 May 2020 15:39:41,562 INFO : 27% Done

11 May 2020 15:39:41,765 INFO : 28% Done

11 May 2020 15:39:41,966 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:41,966 INFO : Inserting HIF1A

11 May 2020 15:39:41,970 INFO : 29% Done

11 May 2020 15:39:42,174 INFO : 30% Done

11 May 2020 15:39:42,373 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:42,373 INFO : Inserting HPN

11 May 2020 15:39:42,378 INFO : 31% Done

11 May 2020 15:39:42,585 INFO : 32% Done

11 May 2020 15:39:42,788 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:42,788 INFO : Inserting HSPB1

11 May 2020 15:39:42,793 INFO : 33% Done

11 May 2020 15:39:42,995 INFO : 34% Done

11 May 2020 15:39:43,196 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:43,197 INFO : Inserting HXC6

11 May 2020 15:39:43,201 INFO : 35% Done

11 May 2020 15:39:43,401 INFO : 36% Done

11 May 2020 15:39:43,599 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:43,599 INFO : Inserting KLK11

11 May 2020 15:39:43,603 INFO : 37% Done

11 May 2020 15:39:44,006 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:44,007 INFO : Inserting KLK2

11 May 2020 15:39:44,011 INFO : 38% Done

11 May 2020 15:39:44,215 INFO : 39% Done

11 May 2020 15:39:44,433 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:44,433 INFO : Inserting MMP2

11 May 2020 15:39:44,437 INFO : 40% Done

11 May 2020 15:39:44,661 INFO : 41% Done

11 May 2020 15:39:44,844 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:44,844 INFO : Inserting MMP9

11 May 2020 15:39:44,848 INFO : 42% Done

11 May 2020 15:39:45,079 INFO : 43% Done

11 May 2020 15:39:45,303 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:45,303 INFO : Inserting MUC1

11 May 2020 15:39:45,307 INFO : 44% Done

11 May 2020 15:39:45,534 INFO : 45% Done

11 May 2020 15:39:45,804 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:45,804 INFO : Inserting MUC6

11 May 2020 15:39:46,036 INFO : 46% Done

11 May 2020 15:39:46,259 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:46,260 INFO : Inserting MYC

11 May 2020 15:39:46,264 INFO : 47% Done

11 May 2020 15:39:46,491 INFO : 48% Done

11 May 2020 15:39:46,716 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:46,716 INFO : Inserting MYCN

11 May 2020 15:39:46,720 INFO : 49% Done

11 May 2020 15:39:46,948 INFO : 50% Done

11 May 2020 15:39:47,172 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:47,173 INFO : Inserting MYO6

11 May 2020 15:39:47,177 INFO : 51% Done

11 May 2020 15:39:47,403 INFO : 52% Done

11 May 2020 15:39:47,627 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:47,628 INFO : Inserting NCOA2

11 May 2020 15:39:47,632 INFO : 53% Done

11 May 2020 15:39:47,881 INFO : 54% Done

11 May 2020 15:39:48,105 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:48,106 INFO : Inserting NPY

11 May 2020 15:39:48,110 INFO : 55% Done

11 May 2020 15:39:48,337 INFO : 56% Done

11 May 2020 15:39:48,563 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:48,563 INFO : Inserting O51E2

11 May 2020 15:39:48,749 INFO : 57% Done

11 May 2020 15:39:48,990 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:48,991 INFO : Inserting OSTP

11 May 2020 15:39:48,995 INFO : 58% Done

11 May 2020 15:39:49,224 INFO : 59% Done

11 May 2020 15:39:49,448 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:49,449 INFO : Inserting P53

11 May 2020 15:39:49,453 INFO : 60% Done

11 May 2020 15:39:49,681 INFO : 61% Done

11 May 2020 15:39:49,920 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:49,921 INFO : Inserting PAFA

11 May 2020 15:39:49,925 INFO : 62% Done

11 May 2020 15:39:50,198 INFO : 63% Done

11 May 2020 15:39:50,424 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:50,424 INFO : Inserting PGFRB

11 May 2020 15:39:50,613 INFO : 64% Done

11 May 2020 15:39:50,836 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:50,836 INFO : Inserting PK3CA

11 May 2020 15:39:50,841 INFO : 65% Done

11 May 2020 15:39:51,070 INFO : 66% Done

11 May 2020 15:39:51,309 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:51,309 INFO : Inserting RAF1

11 May 2020 15:39:51,314 INFO : 67% Done

11 May 2020 15:39:51,550 INFO : 68% Done

11 May 2020 15:39:51,771 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:51,772 INFO : Inserting SERPINI1

11 May 2020 15:39:51,776 INFO : 69% Done

11 May 2020 15:39:52,003 INFO : 70% Done

11 May 2020 15:39:52,237 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:52,237 INFO : Inserting SPINK1

11 May 2020 15:39:52,242 INFO : 71% Done

11 May 2020 15:39:52,473 INFO : 72% Done

11 May 2020 15:39:52,745 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:52,745 INFO : Inserting SPRC

11 May 2020 15:39:52,977 INFO : 73% Done

11 May 2020 15:39:53,203 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:53,203 INFO : Inserting TGFB1

11 May 2020 15:39:53,207 INFO : 74% Done

11 May 2020 15:39:53,659 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:53,660 INFO : Inserting TMPS2

11 May 2020 15:39:53,664 INFO : 75% Done

11 May 2020 15:39:53,890 INFO : 76% Done

11 May 2020 15:39:54,115 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:54,115 INFO : Inserting TPM2

11 May 2020 15:39:54,119 INFO : 77% Done

11 May 2020 15:39:54,347 INFO : 78% Done

11 May 2020 15:39:54,571 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:54,571 INFO : Inserting TWST1

11 May 2020 15:39:54,575 INFO : 79% Done

11 May 2020 15:39:54,832 INFO : 80% Done

11 May 2020 15:39:55,064 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:55,064 INFO : Inserting VEGFA

11 May 2020 15:39:55,069 INFO : 81% Done

11 May 2020 15:39:55,296 INFO : 82% Done

11 May 2020 15:39:55,522 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:55,522 INFO : Inserting PSA

11 May 2020 15:39:55,526 INFO : 83% Done

11 May 2020 15:39:55,977 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:55,978 INFO : Inserting ERG_pan

11 May 2020 15:39:55,982 INFO : 84% Done

11 May 2020 15:39:56,213 INFO : 85% Done

11 May 2020 15:39:56,445 INFO : 86% Done

11 May 2020 15:39:56,676 INFO : 87% Done

11 May 2020 15:39:56,911 INFO : 88% Done

11 May 2020 15:39:57,203 INFO : 89% Done

11 May 2020 15:39:57,502 INFO : 90% Done

11 May 2020 15:39:57,669 DEBUG: Total peptides inserted: 7

11 May 2020 15:39:57,669 INFO : Inserting ETV1

11 May 2020 15:39:57,672 INFO : 91% Done

11 May 2020 15:39:57,837 INFO : 92% Done

11 May 2020 15:39:58,002 INFO : 93% Done

11 May 2020 15:39:58,106 DEBUG: Total peptides inserted: 3

11 May 2020 15:39:58,106 INFO : Inserting ERG8

11 May 2020 15:39:58,109 INFO : 94% Done

11 May 2020 15:39:58,257 INFO : 95% Done

11 May 2020 15:39:58,350 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:58,351 INFO : Inserting SMAD4

11 May 2020 15:39:58,446 INFO : 96% Done

11 May 2020 15:39:58,517 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:58,517 INFO : Inserting STAT3

11 May 2020 15:39:58,519 INFO : 97% Done

11 May 2020 15:39:58,609 INFO : 98% Done

11 May 2020 15:39:58,696 DEBUG: Total peptides inserted: 2

11 May 2020 15:39:58,696 INFO : Done parsing Skyline document.

11 May 2020 15:39:58,697 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:39:58,761 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:39:59,630 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:39:59,991 INFO : Cleaning up temp tables

11 May 2020 15:40:00,306 INFO : Completed import of Skyline document from CPDR-FFPE-ID-282_2020-01-28_10-26-46.sky.zip

11 May 2020 15:40:00,307 INFO : 100% Done

11 May 2020 15:40:00,315 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80127/CPDR-FFPE-ID-282_2020-01-28_10-26-46.sky.zip into the system

11 May 2020 15:40:00,315 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80120/CPDR-FFPE-ID-263_2020-01-28_10-25-28/CPDR-FFPE-ID-263.skyd into the system

11 May 2020 15:40:00,316 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80120/CPDR-FFPE-ID-263_2020-01-28_10-25-28/CPDR-FFPE-ID-263.skyd into the system

11 May 2020 15:40:00,316 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80120/CPDR-FFPE-ID-263_2020-01-28_10-25-28.sky.zip into the system

11 May 2020 15:40:00,318 INFO : Starting import from CPDR-FFPE-ID-263_2020-01-28_10-25-28.sky.zip

11 May 2020 15:40:00,322 INFO : Starting to import Skyline document from CPDR-FFPE-ID-263_2020-01-28_10-25-28.sky.zip

11 May 2020 15:40:00,330 INFO : Expanding CPDR-FFPE-ID-263.skyd

11 May 2020 15:40:00,516 INFO : Expanding CPDR-FFPE-ID-263.sky.view

11 May 2020 15:40:00,517 INFO : Expanding CPDR-FFPE-ID-263.sky

11 May 2020 15:40:01,107 INFO : Inserting TFF3

11 May 2020 15:40:01,133 INFO : 1% Done

11 May 2020 15:40:01,505 INFO : 2% Done

11 May 2020 15:40:01,637 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:01,637 INFO : Inserting AKT1

11 May 2020 15:40:01,641 INFO : 3% Done

11 May 2020 15:40:01,739 INFO : 4% Done

11 May 2020 15:40:01,855 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:01,855 INFO : Inserting AMACR

11 May 2020 15:40:01,859 INFO : 5% Done

11 May 2020 15:40:01,981 INFO : 6% Done

11 May 2020 15:40:02,097 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:02,098 INFO : Inserting ANDR

11 May 2020 15:40:02,102 INFO : 7% Done

11 May 2020 15:40:02,220 INFO : 8% Done

11 May 2020 15:40:02,363 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:02,363 INFO : Inserting ANXA2

11 May 2020 15:40:02,501 INFO : 9% Done

11 May 2020 15:40:02,643 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:02,643 INFO : Inserting AURKA

11 May 2020 15:40:02,647 INFO : 10% Done

11 May 2020 15:40:02,765 INFO : 11% Done

11 May 2020 15:40:02,880 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:02,880 INFO : Inserting BRAF

11 May 2020 15:40:02,884 INFO : 12% Done

11 May 2020 15:40:03,002 INFO : 13% Done

11 May 2020 15:40:03,118 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:03,118 INFO : Inserting CAMKK2

11 May 2020 15:40:03,122 INFO : 14% Done

11 May 2020 15:40:03,241 INFO : 15% Done

11 May 2020 15:40:03,385 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:03,385 INFO : Inserting CCND1

11 May 2020 15:40:03,389 INFO : 16% Done

11 May 2020 15:40:03,597 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:03,598 INFO : Inserting CDN1A

11 May 2020 15:40:03,603 INFO : 17% Done

11 May 2020 15:40:03,725 INFO : 18% Done

11 May 2020 15:40:03,839 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:03,839 INFO : Inserting CRISP3

11 May 2020 15:40:03,843 INFO : 19% Done

11 May 2020 15:40:03,986 INFO : 20% Done

11 May 2020 15:40:04,101 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:04,101 INFO : Inserting DCOR

11 May 2020 15:40:04,105 INFO : 21% Done

11 May 2020 15:40:04,223 INFO : 22% Done

11 May 2020 15:40:04,339 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:04,339 INFO : Inserting EGFR

11 May 2020 15:40:04,343 INFO : 23% Done

11 May 2020 15:40:04,492 INFO : 24% Done

11 May 2020 15:40:04,586 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:04,586 INFO : Inserting EZH2

11 May 2020 15:40:04,590 INFO : 25% Done

11 May 2020 15:40:04,820 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:04,820 INFO : Inserting FGFR1

11 May 2020 15:40:04,960 INFO : 26% Done

11 May 2020 15:40:05,093 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:05,093 INFO : Inserting FOLH1

11 May 2020 15:40:05,098 INFO : 27% Done

11 May 2020 15:40:05,219 INFO : 28% Done

11 May 2020 15:40:05,337 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:05,337 INFO : Inserting HIF1A

11 May 2020 15:40:05,341 INFO : 29% Done

11 May 2020 15:40:05,463 INFO : 30% Done

11 May 2020 15:40:05,589 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:05,589 INFO : Inserting HPN

11 May 2020 15:40:05,592 INFO : 31% Done

11 May 2020 15:40:05,704 INFO : 32% Done

11 May 2020 15:40:05,814 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:05,814 INFO : Inserting HSPB1

11 May 2020 15:40:05,817 INFO : 33% Done

11 May 2020 15:40:05,931 INFO : 34% Done

11 May 2020 15:40:06,041 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:06,041 INFO : Inserting HXC6

11 May 2020 15:40:06,045 INFO : 35% Done

11 May 2020 15:40:06,179 INFO : 36% Done

11 May 2020 15:40:06,312 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:06,312 INFO : Inserting KLK11

11 May 2020 15:40:06,316 INFO : 37% Done

11 May 2020 15:40:06,571 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:06,571 INFO : Inserting KLK2

11 May 2020 15:40:06,575 INFO : 38% Done

11 May 2020 15:40:06,703 INFO : 39% Done

11 May 2020 15:40:06,839 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:06,839 INFO : Inserting MMP2

11 May 2020 15:40:06,844 INFO : 40% Done

11 May 2020 15:40:06,999 INFO : 41% Done

11 May 2020 15:40:07,087 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:07,087 INFO : Inserting MMP9

11 May 2020 15:40:07,090 INFO : 42% Done

11 May 2020 15:40:07,199 INFO : 43% Done

11 May 2020 15:40:07,303 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:07,303 INFO : Inserting MUC1

11 May 2020 15:40:07,306 INFO : 44% Done

11 May 2020 15:40:07,412 INFO : 45% Done

11 May 2020 15:40:07,545 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:07,545 INFO : Inserting MUC6

11 May 2020 15:40:07,548 INFO : 46% Done

11 May 2020 15:40:07,741 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:07,741 INFO : Inserting MYC

11 May 2020 15:40:07,745 INFO : 47% Done

11 May 2020 15:40:07,861 INFO : 48% Done

11 May 2020 15:40:07,959 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:07,959 INFO : Inserting MYCN

11 May 2020 15:40:07,962 INFO : 49% Done

11 May 2020 15:40:08,059 INFO : 50% Done

11 May 2020 15:40:08,210 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:08,210 INFO : Inserting MYO6

11 May 2020 15:40:08,212 INFO : 51% Done

11 May 2020 15:40:08,304 INFO : 52% Done

11 May 2020 15:40:08,395 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:08,395 INFO : Inserting NCOA2

11 May 2020 15:40:08,397 INFO : 53% Done

11 May 2020 15:40:08,493 INFO : 54% Done

11 May 2020 15:40:08,602 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:08,602 INFO : Inserting NPY

11 May 2020 15:40:08,606 INFO : 55% Done

11 May 2020 15:40:08,722 INFO : 56% Done

11 May 2020 15:40:08,840 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:08,840 INFO : Inserting O51E2

11 May 2020 15:40:08,946 INFO : 57% Done

11 May 2020 15:40:09,086 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:09,086 INFO : Inserting OSTP

11 May 2020 15:40:09,090 INFO : 58% Done

11 May 2020 15:40:09,211 INFO : 59% Done

11 May 2020 15:40:09,328 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:09,328 INFO : Inserting P53

11 May 2020 15:40:09,332 INFO : 60% Done

11 May 2020 15:40:09,451 INFO : 61% Done

11 May 2020 15:40:09,573 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:09,574 INFO : Inserting PAFA

11 May 2020 15:40:09,578 INFO : 62% Done

11 May 2020 15:40:09,702 INFO : 63% Done

11 May 2020 15:40:09,874 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:09,875 INFO : Inserting PGFRB

11 May 2020 15:40:09,878 INFO : 64% Done

11 May 2020 15:40:10,159 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:10,159 INFO : Inserting PK3CA

11 May 2020 15:40:10,161 INFO : 65% Done

11 May 2020 15:40:10,252 INFO : 66% Done

11 May 2020 15:40:10,342 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:10,342 INFO : Inserting RAF1

11 May 2020 15:40:10,344 INFO : 67% Done

11 May 2020 15:40:10,435 INFO : 68% Done

11 May 2020 15:40:10,510 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:10,510 INFO : Inserting SERPINI1

11 May 2020 15:40:10,512 INFO : 69% Done

11 May 2020 15:40:10,639 INFO : 70% Done

11 May 2020 15:40:10,760 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:10,760 INFO : Inserting SPINK1

11 May 2020 15:40:10,763 INFO : 71% Done

11 May 2020 15:40:10,864 INFO : 72% Done

11 May 2020 15:40:10,960 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:10,960 INFO : Inserting SPRC

11 May 2020 15:40:11,059 INFO : 73% Done

11 May 2020 15:40:11,161 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:11,162 INFO : Inserting TGFB1

11 May 2020 15:40:11,164 INFO : 74% Done

11 May 2020 15:40:11,355 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:11,355 INFO : Inserting TMPS2

11 May 2020 15:40:11,357 INFO : 75% Done

11 May 2020 15:40:11,469 INFO : 76% Done

11 May 2020 15:40:11,590 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:11,590 INFO : Inserting TPM2

11 May 2020 15:40:11,592 INFO : 77% Done

11 May 2020 15:40:11,691 INFO : 78% Done

11 May 2020 15:40:11,786 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:11,786 INFO : Inserting TWST1

11 May 2020 15:40:11,788 INFO : 79% Done

11 May 2020 15:40:11,883 INFO : 80% Done

11 May 2020 15:40:11,978 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:11,978 INFO : Inserting VEGFA

11 May 2020 15:40:11,980 INFO : 81% Done

11 May 2020 15:40:12,078 INFO : 82% Done

11 May 2020 15:40:12,185 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:12,185 INFO : Inserting PSA

11 May 2020 15:40:12,187 INFO : 83% Done

11 May 2020 15:40:12,389 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:12,389 INFO : 84% Done

11 May 2020 15:40:12,389 INFO : Inserting ERG_pan

11 May 2020 15:40:12,502 INFO : 85% Done

11 May 2020 15:40:12,601 INFO : 86% Done

11 May 2020 15:40:12,712 INFO : 87% Done

11 May 2020 15:40:12,815 INFO : 88% Done

11 May 2020 15:40:12,939 INFO : 89% Done

11 May 2020 15:40:13,035 INFO : 90% Done

11 May 2020 15:40:13,155 DEBUG: Total peptides inserted: 7

11 May 2020 15:40:13,155 INFO : Inserting ETV1

11 May 2020 15:40:13,157 INFO : 91% Done

11 May 2020 15:40:13,259 INFO : 92% Done

11 May 2020 15:40:13,357 INFO : 93% Done

11 May 2020 15:40:13,476 DEBUG: Total peptides inserted: 3

11 May 2020 15:40:13,476 INFO : Inserting ERG8

11 May 2020 15:40:13,479 INFO : 94% Done

11 May 2020 15:40:13,575 INFO : 95% Done

11 May 2020 15:40:13,670 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:13,670 INFO : Inserting SMAD4

11 May 2020 15:40:13,672 INFO : 96% Done

11 May 2020 15:40:13,987 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:13,987 INFO : Inserting STAT3

11 May 2020 15:40:13,990 INFO : 97% Done

11 May 2020 15:40:14,089 INFO : 98% Done

11 May 2020 15:40:14,301 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:14,302 INFO : Done parsing Skyline document.

11 May 2020 15:40:14,303 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:40:14,405 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:40:14,955 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:40:15,190 INFO : Cleaning up temp tables

11 May 2020 15:40:15,500 INFO : Completed import of Skyline document from CPDR-FFPE-ID-263_2020-01-28_10-25-28.sky.zip

11 May 2020 15:40:15,501 INFO : 100% Done

11 May 2020 15:40:15,507 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80120/CPDR-FFPE-ID-263_2020-01-28_10-25-28.sky.zip into the system

11 May 2020 15:40:15,507 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80109/CPDR-FFPE-ID-203_2020-01-28_10-18-16/CPDR-FFPE-ID-203.skyd into the system

11 May 2020 15:40:15,508 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80109/CPDR-FFPE-ID-203_2020-01-28_10-18-16/CPDR-FFPE-ID-203.skyd into the system

11 May 2020 15:40:15,508 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80109/CPDR-FFPE-ID-203_2020-01-28_10-18-16.sky.zip into the system

11 May 2020 15:40:15,511 INFO : Starting import from CPDR-FFPE-ID-203_2020-01-28_10-18-16.sky.zip

11 May 2020 15:40:15,514 INFO : Starting to import Skyline document from CPDR-FFPE-ID-203_2020-01-28_10-18-16.sky.zip

11 May 2020 15:40:15,525 INFO : Expanding CPDR-FFPE-ID-203.skyd

11 May 2020 15:40:15,718 INFO : Expanding CPDR-FFPE-ID-203.sky.view

11 May 2020 15:40:15,719 INFO : Expanding CPDR-FFPE-ID-203.sky

11 May 2020 15:40:16,051 INFO : Inserting TFF3

11 May 2020 15:40:16,056 INFO : 1% Done

11 May 2020 15:40:16,180 INFO : 2% Done

11 May 2020 15:40:16,326 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:16,326 INFO : Inserting AKT1

11 May 2020 15:40:16,328 INFO : 3% Done

11 May 2020 15:40:16,409 INFO : 4% Done

11 May 2020 15:40:16,507 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:16,507 INFO : Inserting AMACR

11 May 2020 15:40:16,509 INFO : 5% Done

11 May 2020 15:40:16,607 INFO : 6% Done

11 May 2020 15:40:16,715 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:16,715 INFO : Inserting ANDR

11 May 2020 15:40:16,717 INFO : 7% Done

11 May 2020 15:40:16,828 INFO : 8% Done

11 May 2020 15:40:16,927 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:16,927 INFO : Inserting ANXA2

11 May 2020 15:40:17,027 INFO : 9% Done

11 May 2020 15:40:17,128 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:17,128 INFO : Inserting AURKA

11 May 2020 15:40:17,130 INFO : 10% Done

11 May 2020 15:40:17,226 INFO : 11% Done

11 May 2020 15:40:17,334 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:17,334 INFO : Inserting BRAF

11 May 2020 15:40:17,336 INFO : 12% Done

11 May 2020 15:40:17,455 INFO : 13% Done

11 May 2020 15:40:17,551 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:17,552 INFO : Inserting CAMKK2

11 May 2020 15:40:17,554 INFO : 14% Done

11 May 2020 15:40:17,653 INFO : 15% Done

11 May 2020 15:40:17,765 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:17,765 INFO : Inserting CCND1

11 May 2020 15:40:17,768 INFO : 16% Done

11 May 2020 15:40:17,899 INFO : 17% Done

11 May 2020 15:40:18,018 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:18,018 INFO : Inserting CDN1A

11 May 2020 15:40:18,155 INFO : 18% Done

11 May 2020 15:40:18,260 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:18,260 INFO : Inserting CRISP3

11 May 2020 15:40:18,262 INFO : 19% Done

11 May 2020 15:40:18,407 INFO : 20% Done

11 May 2020 15:40:18,521 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:18,521 INFO : Inserting DCOR

11 May 2020 15:40:18,523 INFO : 21% Done

11 May 2020 15:40:18,637 INFO : 22% Done

11 May 2020 15:40:18,741 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:18,741 INFO : Inserting EGFR

11 May 2020 15:40:18,743 INFO : 23% Done

11 May 2020 15:40:18,845 INFO : 24% Done

11 May 2020 15:40:18,926 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:18,926 INFO : Inserting EZH2

11 May 2020 15:40:18,928 INFO : 25% Done

11 May 2020 15:40:19,158 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:19,158 INFO : Inserting FGFR1

11 May 2020 15:40:19,262 INFO : 26% Done

11 May 2020 15:40:19,379 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:19,379 INFO : Inserting FOLH1

11 May 2020 15:40:19,381 INFO : 27% Done

11 May 2020 15:40:19,485 INFO : 28% Done

11 May 2020 15:40:19,743 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:19,743 INFO : Inserting HIF1A

11 May 2020 15:40:19,745 INFO : 29% Done

11 May 2020 15:40:19,863 INFO : 30% Done

11 May 2020 15:40:19,964 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:19,964 INFO : Inserting HPN

11 May 2020 15:40:19,966 INFO : 31% Done

11 May 2020 15:40:20,087 INFO : 32% Done

11 May 2020 15:40:20,186 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:20,186 INFO : Inserting HSPB1

11 May 2020 15:40:20,188 INFO : 33% Done

11 May 2020 15:40:20,303 INFO : 34% Done

11 May 2020 15:40:20,410 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:20,410 INFO : Inserting HXC6

11 May 2020 15:40:20,412 INFO : 35% Done

11 May 2020 15:40:20,536 INFO : 36% Done

11 May 2020 15:40:20,691 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:20,691 INFO : Inserting KLK11

11 May 2020 15:40:20,831 INFO : 37% Done

11 May 2020 15:40:20,969 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:20,969 INFO : Inserting KLK2

11 May 2020 15:40:20,972 INFO : 38% Done

11 May 2020 15:40:21,294 INFO : 39% Done

11 May 2020 15:40:21,393 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:21,393 INFO : Inserting MMP2

11 May 2020 15:40:21,396 INFO : 40% Done

11 May 2020 15:40:21,492 INFO : 41% Done

11 May 2020 15:40:21,581 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:21,581 INFO : Inserting MMP9

11 May 2020 15:40:21,584 INFO : 42% Done

11 May 2020 15:40:21,689 INFO : 43% Done

11 May 2020 15:40:21,824 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:21,825 INFO : Inserting MUC1

11 May 2020 15:40:21,827 INFO : 44% Done

11 May 2020 15:40:21,930 INFO : 45% Done

11 May 2020 15:40:22,034 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:22,034 INFO : Inserting MUC6

11 May 2020 15:40:22,148 INFO : 46% Done

11 May 2020 15:40:22,263 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:22,263 INFO : Inserting MYC

11 May 2020 15:40:22,265 INFO : 47% Done

11 May 2020 15:40:22,370 INFO : 48% Done

11 May 2020 15:40:22,472 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:22,473 INFO : Inserting MYCN

11 May 2020 15:40:22,475 INFO : 49% Done

11 May 2020 15:40:22,579 INFO : 50% Done

11 May 2020 15:40:22,693 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:22,693 INFO : Inserting MYO6

11 May 2020 15:40:22,695 INFO : 51% Done

11 May 2020 15:40:22,797 INFO : 52% Done

11 May 2020 15:40:22,919 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:22,920 INFO : Inserting NCOA2

11 May 2020 15:40:22,922 INFO : 53% Done

11 May 2020 15:40:23,029 INFO : 54% Done

11 May 2020 15:40:23,129 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:23,130 INFO : Inserting NPY

11 May 2020 15:40:23,132 INFO : 55% Done

11 May 2020 15:40:23,233 INFO : 56% Done

11 May 2020 15:40:23,333 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:23,333 INFO : Inserting O51E2

11 May 2020 15:40:23,429 INFO : 57% Done

11 May 2020 15:40:23,531 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:23,531 INFO : Inserting OSTP

11 May 2020 15:40:23,533 INFO : 58% Done

11 May 2020 15:40:23,635 INFO : 59% Done

11 May 2020 15:40:23,736 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:23,736 INFO : Inserting P53

11 May 2020 15:40:23,738 INFO : 60% Done

11 May 2020 15:40:23,839 INFO : 61% Done

11 May 2020 15:40:23,948 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:23,948 INFO : Inserting PAFA

11 May 2020 15:40:23,950 INFO : 62% Done

11 May 2020 15:40:24,053 INFO : 63% Done

11 May 2020 15:40:24,168 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:24,169 INFO : Inserting PGFRB

11 May 2020 15:40:24,254 INFO : 64% Done

11 May 2020 15:40:24,355 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:24,356 INFO : Inserting PK3CA

11 May 2020 15:40:24,358 INFO : 65% Done

11 May 2020 15:40:24,461 INFO : 66% Done

11 May 2020 15:40:24,573 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:24,573 INFO : Inserting RAF1

11 May 2020 15:40:24,578 INFO : 67% Done

11 May 2020 15:40:24,702 INFO : 68% Done

11 May 2020 15:40:24,932 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:24,932 INFO : Inserting SERPINI1

11 May 2020 15:40:24,934 INFO : 69% Done

11 May 2020 15:40:25,037 INFO : 70% Done

11 May 2020 15:40:25,138 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:25,139 INFO : Inserting SPINK1

11 May 2020 15:40:25,161 INFO : 71% Done

11 May 2020 15:40:25,288 INFO : 72% Done

11 May 2020 15:40:25,390 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:25,390 INFO : Inserting SPRC

11 May 2020 15:40:25,491 INFO : 73% Done

11 May 2020 15:40:25,588 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:25,589 INFO : Inserting TGFB1

11 May 2020 15:40:25,591 INFO : 74% Done

11 May 2020 15:40:25,816 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:25,816 INFO : Inserting TMPS2

11 May 2020 15:40:25,818 INFO : 75% Done

11 May 2020 15:40:25,917 INFO : 76% Done

11 May 2020 15:40:26,016 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:26,016 INFO : Inserting TPM2

11 May 2020 15:40:26,018 INFO : 77% Done

11 May 2020 15:40:26,141 INFO : 78% Done

11 May 2020 15:40:26,238 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:26,238 INFO : Inserting TWST1

11 May 2020 15:40:26,240 INFO : 79% Done

11 May 2020 15:40:26,346 INFO : 80% Done

11 May 2020 15:40:26,446 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:26,446 INFO : Inserting VEGFA

11 May 2020 15:40:26,449 INFO : 81% Done

11 May 2020 15:40:26,551 INFO : 82% Done

11 May 2020 15:40:26,653 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:26,653 INFO : Inserting PSA

11 May 2020 15:40:26,655 INFO : 83% Done

11 May 2020 15:40:26,759 INFO : 84% Done

11 May 2020 15:40:26,875 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:26,875 INFO : Inserting ERG_pan

11 May 2020 15:40:26,987 INFO : 85% Done

11 May 2020 15:40:27,087 INFO : 86% Done

11 May 2020 15:40:27,187 INFO : 87% Done

11 May 2020 15:40:27,291 INFO : 88% Done

11 May 2020 15:40:27,398 INFO : 89% Done

11 May 2020 15:40:27,501 INFO : 90% Done

11 May 2020 15:40:27,603 DEBUG: Total peptides inserted: 7

11 May 2020 15:40:27,603 INFO : Inserting ETV1

11 May 2020 15:40:27,605 INFO : 91% Done

11 May 2020 15:40:27,707 INFO : 92% Done

11 May 2020 15:40:27,811 INFO : 93% Done

11 May 2020 15:40:27,914 DEBUG: Total peptides inserted: 3

11 May 2020 15:40:27,914 INFO : Inserting ERG8

11 May 2020 15:40:27,916 INFO : 94% Done

11 May 2020 15:40:28,023 INFO : 95% Done

11 May 2020 15:40:28,131 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:28,132 INFO : Inserting SMAD4

11 May 2020 15:40:28,134 INFO : 96% Done

11 May 2020 15:40:28,327 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:28,328 INFO : Inserting STAT3

11 May 2020 15:40:28,330 INFO : 97% Done

11 May 2020 15:40:28,433 INFO : 98% Done

11 May 2020 15:40:28,537 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:28,537 INFO : Done parsing Skyline document.

11 May 2020 15:40:28,538 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:40:28,622 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:40:29,156 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:40:29,364 INFO : Cleaning up temp tables

11 May 2020 15:40:29,679 INFO : Completed import of Skyline document from CPDR-FFPE-ID-203_2020-01-28_10-18-16.sky.zip

11 May 2020 15:40:29,680 INFO : 100% Done

11 May 2020 15:40:29,686 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80109/CPDR-FFPE-ID-203_2020-01-28_10-18-16.sky.zip into the system

11 May 2020 15:40:29,686 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80157/CPDR-FFPE-ID-297_2020-01-28_10-45-29/CPDR-FFPE-ID-297.skyd into the system

11 May 2020 15:40:29,687 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80157/CPDR-FFPE-ID-297_2020-01-28_10-45-29/CPDR-FFPE-ID-297.skyd into the system

11 May 2020 15:40:29,687 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80157/CPDR-FFPE-ID-297_2020-01-28_10-45-29.sky.zip into the system

11 May 2020 15:40:29,690 INFO : Starting import from CPDR-FFPE-ID-297_2020-01-28_10-45-29.sky.zip

11 May 2020 15:40:29,694 INFO : Starting to import Skyline document from CPDR-FFPE-ID-297_2020-01-28_10-45-29.sky.zip

11 May 2020 15:40:29,702 INFO : Expanding CPDR-FFPE-ID-297.skyd

11 May 2020 15:40:29,907 INFO : Expanding CPDR-FFPE-ID-297.sky.view

11 May 2020 15:40:29,907 INFO : Expanding CPDR-FFPE-ID-297.sky

11 May 2020 15:40:30,248 INFO : Inserting TFF3

11 May 2020 15:40:30,254 INFO : 1% Done

11 May 2020 15:40:30,367 INFO : 2% Done

11 May 2020 15:40:30,479 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:30,479 INFO : Inserting AKT1

11 May 2020 15:40:30,482 INFO : 3% Done

11 May 2020 15:40:30,575 INFO : 4% Done

11 May 2020 15:40:30,674 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:30,674 INFO : Inserting AMACR

11 May 2020 15:40:30,677 INFO : 5% Done

11 May 2020 15:40:30,780 INFO : 6% Done

11 May 2020 15:40:30,884 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:30,884 INFO : Inserting ANDR

11 May 2020 15:40:30,886 INFO : 7% Done

11 May 2020 15:40:31,136 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:31,136 INFO : Inserting ANXA2

11 May 2020 15:40:31,140 INFO : 8% Done

11 May 2020 15:40:31,253 INFO : 9% Done

11 May 2020 15:40:31,374 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:31,374 INFO : Inserting AURKA

11 May 2020 15:40:31,376 INFO : 10% Done

11 May 2020 15:40:31,490 INFO : 11% Done

11 May 2020 15:40:31,609 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:31,609 INFO : Inserting BRAF

11 May 2020 15:40:31,611 INFO : 12% Done

11 May 2020 15:40:31,729 INFO : 13% Done

11 May 2020 15:40:31,833 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:31,833 INFO : Inserting CAMKK2

11 May 2020 15:40:31,835 INFO : 14% Done

11 May 2020 15:40:31,939 INFO : 15% Done

11 May 2020 15:40:32,043 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:32,043 INFO : Inserting CCND1

11 May 2020 15:40:32,045 INFO : 16% Done

11 May 2020 15:40:32,156 INFO : 17% Done

11 May 2020 15:40:32,237 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:32,237 INFO : Inserting CDN1A

11 May 2020 15:40:32,342 INFO : 18% Done

11 May 2020 15:40:32,442 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:32,442 INFO : Inserting CRISP3

11 May 2020 15:40:32,444 INFO : 19% Done

11 May 2020 15:40:32,545 INFO : 20% Done

11 May 2020 15:40:32,654 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:32,655 INFO : Inserting DCOR

11 May 2020 15:40:32,657 INFO : 21% Done

11 May 2020 15:40:32,764 INFO : 22% Done

11 May 2020 15:40:32,881 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:32,881 INFO : Inserting EGFR

11 May 2020 15:40:32,883 INFO : 23% Done

11 May 2020 15:40:33,031 INFO : 24% Done

11 May 2020 15:40:33,112 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:33,112 INFO : Inserting EZH2

11 May 2020 15:40:33,114 INFO : 25% Done

11 May 2020 15:40:33,321 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:33,321 INFO : Inserting FGFR1

11 May 2020 15:40:33,424 INFO : 26% Done

11 May 2020 15:40:33,525 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:33,525 INFO : Inserting FOLH1

11 May 2020 15:40:33,527 INFO : 27% Done

11 May 2020 15:40:33,638 INFO : 28% Done

11 May 2020 15:40:33,743 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:33,743 INFO : Inserting HIF1A

11 May 2020 15:40:33,745 INFO : 29% Done

11 May 2020 15:40:33,861 INFO : 30% Done

11 May 2020 15:40:33,961 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:33,961 INFO : Inserting HPN

11 May 2020 15:40:33,963 INFO : 31% Done

11 May 2020 15:40:34,080 INFO : 32% Done

11 May 2020 15:40:34,178 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:34,178 INFO : Inserting HSPB1

11 May 2020 15:40:34,180 INFO : 33% Done

11 May 2020 15:40:34,279 INFO : 34% Done

11 May 2020 15:40:34,378 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:34,378 INFO : Inserting HXC6

11 May 2020 15:40:34,380 INFO : 35% Done

11 May 2020 15:40:34,478 INFO : 36% Done

11 May 2020 15:40:34,582 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:34,582 INFO : Inserting KLK11

11 May 2020 15:40:34,701 INFO : 37% Done

11 May 2020 15:40:34,800 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:34,800 INFO : Inserting KLK2

11 May 2020 15:40:34,802 INFO : 38% Done

11 May 2020 15:40:34,900 INFO : 39% Done

11 May 2020 15:40:35,001 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:35,001 INFO : Inserting MMP2

11 May 2020 15:40:35,003 INFO : 40% Done

11 May 2020 15:40:35,102 INFO : 41% Done

11 May 2020 15:40:35,180 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:35,180 INFO : Inserting MMP9

11 May 2020 15:40:35,182 INFO : 42% Done

11 May 2020 15:40:35,281 INFO : 43% Done

11 May 2020 15:40:35,410 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:35,410 INFO : Inserting MUC1

11 May 2020 15:40:35,412 INFO : 44% Done

11 May 2020 15:40:35,521 INFO : 45% Done

11 May 2020 15:40:35,622 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:35,623 INFO : Inserting MUC6

11 May 2020 15:40:35,739 INFO : 46% Done

11 May 2020 15:40:35,839 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:35,840 INFO : Inserting MYC

11 May 2020 15:40:35,842 INFO : 47% Done

11 May 2020 15:40:35,941 INFO : 48% Done

11 May 2020 15:40:36,040 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:36,040 INFO : Inserting MYCN

11 May 2020 15:40:36,042 INFO : 49% Done

11 May 2020 15:40:36,141 INFO : 50% Done

11 May 2020 15:40:36,239 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:36,239 INFO : Inserting MYO6

11 May 2020 15:40:36,241 INFO : 51% Done

11 May 2020 15:40:36,340 INFO : 52% Done

11 May 2020 15:40:36,437 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:36,438 INFO : Inserting NCOA2

11 May 2020 15:40:36,440 INFO : 53% Done

11 May 2020 15:40:36,544 INFO : 54% Done

11 May 2020 15:40:36,643 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:36,643 INFO : Inserting NPY

11 May 2020 15:40:36,645 INFO : 55% Done

11 May 2020 15:40:36,745 INFO : 56% Done

11 May 2020 15:40:36,862 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:36,862 INFO : Inserting O51E2

11 May 2020 15:40:36,944 INFO : 57% Done

11 May 2020 15:40:37,051 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:37,052 INFO : Inserting OSTP

11 May 2020 15:40:37,054 INFO : 58% Done

11 May 2020 15:40:37,170 INFO : 59% Done

11 May 2020 15:40:37,273 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:37,273 INFO : Inserting P53

11 May 2020 15:40:37,275 INFO : 60% Done

11 May 2020 15:40:37,389 INFO : 61% Done

11 May 2020 15:40:37,494 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:37,494 INFO : Inserting PAFA

11 May 2020 15:40:37,496 INFO : 62% Done

11 May 2020 15:40:37,610 INFO : 63% Done

11 May 2020 15:40:37,710 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:37,710 INFO : Inserting PGFRB

11 May 2020 15:40:37,792 INFO : 64% Done

11 May 2020 15:40:37,888 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:37,888 INFO : Inserting PK3CA

11 May 2020 15:40:37,890 INFO : 65% Done

11 May 2020 15:40:37,993 INFO : 66% Done

11 May 2020 15:40:38,095 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:38,096 INFO : Inserting RAF1

11 May 2020 15:40:38,098 INFO : 67% Done

11 May 2020 15:40:38,200 INFO : 68% Done

11 May 2020 15:40:38,292 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:38,292 INFO : Inserting SERPINI1

11 May 2020 15:40:38,294 INFO : 69% Done

11 May 2020 15:40:38,398 INFO : 70% Done

11 May 2020 15:40:38,493 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:38,493 INFO : Inserting SPINK1

11 May 2020 15:40:38,495 INFO : 71% Done

11 May 2020 15:40:38,587 INFO : 72% Done

11 May 2020 15:40:38,673 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:38,673 INFO : Inserting SPRC

11 May 2020 15:40:38,765 INFO : 73% Done

11 May 2020 15:40:38,853 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:38,853 INFO : Inserting TGFB1

11 May 2020 15:40:38,855 INFO : 74% Done

11 May 2020 15:40:39,037 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:39,037 INFO : Inserting TMPS2

11 May 2020 15:40:39,040 INFO : 75% Done

11 May 2020 15:40:39,137 INFO : 76% Done

11 May 2020 15:40:39,227 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:39,227 INFO : Inserting TPM2

11 May 2020 15:40:39,230 INFO : 77% Done

11 May 2020 15:40:39,322 INFO : 78% Done

11 May 2020 15:40:39,412 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:39,413 INFO : Inserting TWST1

11 May 2020 15:40:39,415 INFO : 79% Done

11 May 2020 15:40:39,521 INFO : 80% Done

11 May 2020 15:40:39,637 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:39,638 INFO : Inserting VEGFA

11 May 2020 15:40:39,641 INFO : 81% Done

11 May 2020 15:40:39,785 INFO : 82% Done

11 May 2020 15:40:39,879 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:39,879 INFO : Inserting PSA

11 May 2020 15:40:39,881 INFO : 83% Done

11 May 2020 15:40:40,081 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:40,081 INFO : Inserting ERG_pan

11 May 2020 15:40:40,083 INFO : 84% Done

11 May 2020 15:40:40,177 INFO : 85% Done

11 May 2020 15:40:40,270 INFO : 86% Done

11 May 2020 15:40:40,363 INFO : 87% Done

11 May 2020 15:40:40,455 INFO : 88% Done

11 May 2020 15:40:40,565 INFO : 89% Done

11 May 2020 15:40:40,683 INFO : 90% Done

11 May 2020 15:40:40,770 DEBUG: Total peptides inserted: 7

11 May 2020 15:40:40,770 INFO : Inserting ETV1

11 May 2020 15:40:40,772 INFO : 91% Done

11 May 2020 15:40:40,863 INFO : 92% Done

11 May 2020 15:40:40,956 INFO : 93% Done

11 May 2020 15:40:41,057 DEBUG: Total peptides inserted: 3

11 May 2020 15:40:41,057 INFO : Inserting ERG8

11 May 2020 15:40:41,060 INFO : 94% Done

11 May 2020 15:40:41,150 INFO : 95% Done

11 May 2020 15:40:41,236 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:41,237 INFO : Inserting SMAD4

11 May 2020 15:40:41,352 INFO : 96% Done

11 May 2020 15:40:41,436 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:41,436 INFO : Inserting STAT3

11 May 2020 15:40:41,449 INFO : 97% Done

11 May 2020 15:40:41,542 INFO : 98% Done

11 May 2020 15:40:41,633 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:41,633 INFO : Done parsing Skyline document.

11 May 2020 15:40:41,634 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:40:41,704 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:40:42,242 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:40:42,487 INFO : Cleaning up temp tables

11 May 2020 15:40:42,751 INFO : Completed import of Skyline document from CPDR-FFPE-ID-297_2020-01-28_10-45-29.sky.zip

11 May 2020 15:40:42,752 INFO : 100% Done

11 May 2020 15:40:42,757 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80157/CPDR-FFPE-ID-297_2020-01-28_10-45-29.sky.zip into the system

11 May 2020 15:40:42,757 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80156/CPDR-FFPE-ID-288_2020-01-28_10-44-54/CPDR-FFPE-ID-288.skyd into the system

11 May 2020 15:40:42,758 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80156/CPDR-FFPE-ID-288_2020-01-28_10-44-54/CPDR-FFPE-ID-288.skyd into the system

11 May 2020 15:40:42,758 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80156/CPDR-FFPE-ID-288_2020-01-28_10-44-54.sky.zip into the system

11 May 2020 15:40:42,760 INFO : Starting import from CPDR-FFPE-ID-288_2020-01-28_10-44-54.sky.zip

11 May 2020 15:40:42,763 INFO : Starting to import Skyline document from CPDR-FFPE-ID-288_2020-01-28_10-44-54.sky.zip

11 May 2020 15:40:42,771 INFO : Expanding CPDR-FFPE-ID-288.skyd

11 May 2020 15:40:42,953 INFO : Expanding CPDR-FFPE-ID-288.sky.view

11 May 2020 15:40:42,954 INFO : Expanding CPDR-FFPE-ID-288.sky

11 May 2020 15:40:43,234 INFO : Inserting TFF3

11 May 2020 15:40:43,239 INFO : 1% Done

11 May 2020 15:40:43,338 INFO : 2% Done

11 May 2020 15:40:43,452 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:43,452 INFO : Inserting AKT1

11 May 2020 15:40:43,454 INFO : 3% Done

11 May 2020 15:40:43,599 INFO : 4% Done

11 May 2020 15:40:43,688 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:43,688 INFO : Inserting AMACR

11 May 2020 15:40:43,690 INFO : 5% Done

11 May 2020 15:40:43,787 INFO : 6% Done

11 May 2020 15:40:43,881 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:43,881 INFO : Inserting ANDR

11 May 2020 15:40:43,883 INFO : 7% Done

11 May 2020 15:40:43,990 INFO : 8% Done

11 May 2020 15:40:44,086 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:44,086 INFO : Inserting ANXA2

11 May 2020 15:40:44,202 INFO : 9% Done

11 May 2020 15:40:44,336 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:44,336 INFO : Inserting AURKA

11 May 2020 15:40:44,338 INFO : 10% Done

11 May 2020 15:40:44,448 INFO : 11% Done

11 May 2020 15:40:44,539 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:44,539 INFO : Inserting BRAF

11 May 2020 15:40:44,541 INFO : 12% Done

11 May 2020 15:40:44,634 INFO : 13% Done

11 May 2020 15:40:44,751 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:44,751 INFO : Inserting CAMKK2

11 May 2020 15:40:44,755 INFO : 14% Done

11 May 2020 15:40:44,858 INFO : 15% Done

11 May 2020 15:40:44,954 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:44,955 INFO : Inserting CCND1

11 May 2020 15:40:44,958 INFO : 16% Done

11 May 2020 15:40:45,145 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:45,145 INFO : 17% Done

11 May 2020 15:40:45,145 INFO : Inserting CDN1A

11 May 2020 15:40:45,252 INFO : 18% Done

11 May 2020 15:40:45,609 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:45,609 INFO : Inserting CRISP3

11 May 2020 15:40:45,612 INFO : 19% Done

11 May 2020 15:40:45,727 INFO : 20% Done

11 May 2020 15:40:45,843 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:45,844 INFO : Inserting DCOR

11 May 2020 15:40:45,846 INFO : 21% Done

11 May 2020 15:40:45,935 INFO : 22% Done

11 May 2020 15:40:46,036 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:46,036 INFO : Inserting EGFR

11 May 2020 15:40:46,040 INFO : 23% Done

11 May 2020 15:40:46,150 INFO : 24% Done

11 May 2020 15:40:46,245 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:46,245 INFO : Inserting EZH2

11 May 2020 15:40:46,247 INFO : 25% Done

11 May 2020 15:40:46,453 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:46,453 INFO : Inserting FGFR1

11 May 2020 15:40:46,555 INFO : 26% Done

11 May 2020 15:40:46,662 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:46,662 INFO : Inserting FOLH1

11 May 2020 15:40:46,664 INFO : 27% Done

11 May 2020 15:40:46,767 INFO : 28% Done

11 May 2020 15:40:46,869 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:46,869 INFO : Inserting HIF1A

11 May 2020 15:40:46,871 INFO : 29% Done

11 May 2020 15:40:46,969 INFO : 30% Done

11 May 2020 15:40:47,066 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:47,066 INFO : Inserting HPN

11 May 2020 15:40:47,068 INFO : 31% Done

11 May 2020 15:40:47,171 INFO : 32% Done

11 May 2020 15:40:47,269 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:47,269 INFO : Inserting HSPB1

11 May 2020 15:40:47,271 INFO : 33% Done

11 May 2020 15:40:47,387 INFO : 34% Done

11 May 2020 15:40:47,520 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:47,520 INFO : Inserting HXC6

11 May 2020 15:40:47,522 INFO : 35% Done

11 May 2020 15:40:47,618 INFO : 36% Done

11 May 2020 15:40:47,723 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:47,723 INFO : Inserting KLK11

11 May 2020 15:40:47,835 INFO : 37% Done

11 May 2020 15:40:47,960 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:47,960 INFO : Inserting KLK2

11 May 2020 15:40:47,962 INFO : 38% Done

11 May 2020 15:40:48,065 INFO : 39% Done

11 May 2020 15:40:48,177 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:48,177 INFO : Inserting MMP2

11 May 2020 15:40:48,179 INFO : 40% Done

11 May 2020 15:40:48,276 INFO : 41% Done

11 May 2020 15:40:48,355 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:48,355 INFO : Inserting MMP9

11 May 2020 15:40:48,357 INFO : 42% Done

11 May 2020 15:40:48,454 INFO : 43% Done

11 May 2020 15:40:48,563 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:48,563 INFO : Inserting MUC1

11 May 2020 15:40:48,565 INFO : 44% Done

11 May 2020 15:40:48,696 INFO : 45% Done

11 May 2020 15:40:48,796 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:48,796 INFO : Inserting MUC6

11 May 2020 15:40:48,798 INFO : 46% Done

11 May 2020 15:40:49,041 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:49,041 INFO : Inserting MYC

11 May 2020 15:40:49,044 INFO : 47% Done

11 May 2020 15:40:49,184 INFO : 48% Done

11 May 2020 15:40:49,334 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:49,334 INFO : Inserting MYCN

11 May 2020 15:40:49,338 INFO : 49% Done

11 May 2020 15:40:49,492 INFO : 50% Done

11 May 2020 15:40:49,638 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:49,639 INFO : Inserting MYO6

11 May 2020 15:40:49,642 INFO : 51% Done

11 May 2020 15:40:49,804 INFO : 52% Done

11 May 2020 15:40:49,904 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:49,904 INFO : Inserting NCOA2

11 May 2020 15:40:49,906 INFO : 53% Done

11 May 2020 15:40:50,006 INFO : 54% Done

11 May 2020 15:40:50,114 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:50,114 INFO : Inserting NPY

11 May 2020 15:40:50,117 INFO : 55% Done

11 May 2020 15:40:50,220 INFO : 56% Done

11 May 2020 15:40:50,333 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:50,333 INFO : Inserting O51E2

11 May 2020 15:40:50,417 INFO : 57% Done

11 May 2020 15:40:50,758 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:50,758 INFO : Inserting OSTP

11 May 2020 15:40:50,760 INFO : 58% Done

11 May 2020 15:40:50,862 INFO : 59% Done

11 May 2020 15:40:50,960 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:50,960 INFO : Inserting P53

11 May 2020 15:40:50,962 INFO : 60% Done

11 May 2020 15:40:51,075 INFO : 61% Done

11 May 2020 15:40:51,172 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:51,172 INFO : Inserting PAFA

11 May 2020 15:40:51,175 INFO : 62% Done

11 May 2020 15:40:51,317 INFO : 63% Done

11 May 2020 15:40:51,419 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:51,419 INFO : Inserting PGFRB

11 May 2020 15:40:51,529 INFO : 64% Done

11 May 2020 15:40:51,630 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:51,630 INFO : Inserting PK3CA

11 May 2020 15:40:51,632 INFO : 65% Done

11 May 2020 15:40:51,733 INFO : 66% Done

11 May 2020 15:40:51,837 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:51,837 INFO : Inserting RAF1

11 May 2020 15:40:51,839 INFO : 67% Done

11 May 2020 15:40:51,937 INFO : 68% Done

11 May 2020 15:40:52,024 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:52,024 INFO : Inserting SERPINI1

11 May 2020 15:40:52,026 INFO : 69% Done

11 May 2020 15:40:52,127 INFO : 70% Done

11 May 2020 15:40:52,231 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:52,231 INFO : Inserting SPINK1

11 May 2020 15:40:52,233 INFO : 71% Done

11 May 2020 15:40:52,335 INFO : 72% Done

11 May 2020 15:40:52,434 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:52,434 INFO : Inserting SPRC

11 May 2020 15:40:52,437 INFO : 73% Done

11 May 2020 15:40:52,691 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:52,691 INFO : Inserting TGFB1

11 May 2020 15:40:52,693 INFO : 74% Done

11 May 2020 15:40:52,919 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:52,920 INFO : Inserting TMPS2

11 May 2020 15:40:52,922 INFO : 75% Done

11 May 2020 15:40:53,058 INFO : 76% Done

11 May 2020 15:40:53,187 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:53,187 INFO : Inserting TPM2

11 May 2020 15:40:53,190 INFO : 77% Done

11 May 2020 15:40:53,295 INFO : 78% Done

11 May 2020 15:40:53,427 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:53,427 INFO : Inserting TWST1

11 May 2020 15:40:53,429 INFO : 79% Done

11 May 2020 15:40:53,562 INFO : 80% Done

11 May 2020 15:40:53,684 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:53,684 INFO : Inserting VEGFA

11 May 2020 15:40:53,687 INFO : 81% Done

11 May 2020 15:40:53,804 INFO : 82% Done

11 May 2020 15:40:53,920 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:53,920 INFO : Inserting PSA

11 May 2020 15:40:53,922 INFO : 83% Done

11 May 2020 15:40:54,163 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:54,163 INFO : Inserting ERG_pan

11 May 2020 15:40:54,167 INFO : 84% Done

11 May 2020 15:40:54,282 INFO : 85% Done

11 May 2020 15:40:54,412 INFO : 86% Done

11 May 2020 15:40:54,515 INFO : 87% Done

11 May 2020 15:40:54,617 INFO : 88% Done

11 May 2020 15:40:54,730 INFO : 89% Done

11 May 2020 15:40:54,839 INFO : 90% Done

11 May 2020 15:40:54,940 DEBUG: Total peptides inserted: 7

11 May 2020 15:40:54,940 INFO : Inserting ETV1

11 May 2020 15:40:54,942 INFO : 91% Done

11 May 2020 15:40:55,045 INFO : 92% Done

11 May 2020 15:40:55,150 INFO : 93% Done

11 May 2020 15:40:55,281 DEBUG: Total peptides inserted: 3

11 May 2020 15:40:55,282 INFO : Inserting ERG8

11 May 2020 15:40:55,284 INFO : 94% Done

11 May 2020 15:40:55,505 INFO : 95% Done

11 May 2020 15:40:55,640 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:55,641 INFO : Inserting SMAD4

11 May 2020 15:40:55,843 INFO : 96% Done

11 May 2020 15:40:55,924 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:55,924 INFO : Inserting STAT3

11 May 2020 15:40:55,926 INFO : 97% Done

11 May 2020 15:40:56,028 INFO : 98% Done

11 May 2020 15:40:56,132 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:56,132 INFO : Done parsing Skyline document.

11 May 2020 15:40:56,134 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:40:56,209 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:40:56,726 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:40:56,919 INFO : Cleaning up temp tables

11 May 2020 15:40:57,230 INFO : Completed import of Skyline document from CPDR-FFPE-ID-288_2020-01-28_10-44-54.sky.zip

11 May 2020 15:40:57,231 INFO : 100% Done

11 May 2020 15:40:57,236 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80156/CPDR-FFPE-ID-288_2020-01-28_10-44-54.sky.zip into the system

11 May 2020 15:40:57,236 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80155/CPDR-FFPE-ID-281_2020-01-28_10-44-16/CPDR-FFPE-ID-281.skyd into the system

11 May 2020 15:40:57,237 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80155/CPDR-FFPE-ID-281_2020-01-28_10-44-16/CPDR-FFPE-ID-281.skyd into the system

11 May 2020 15:40:57,237 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80155/CPDR-FFPE-ID-281_2020-01-28_10-44-16.sky.zip into the system

11 May 2020 15:40:57,239 INFO : Starting import from CPDR-FFPE-ID-281_2020-01-28_10-44-16.sky.zip

11 May 2020 15:40:57,243 INFO : Starting to import Skyline document from CPDR-FFPE-ID-281_2020-01-28_10-44-16.sky.zip

11 May 2020 15:40:57,255 INFO : Expanding CPDR-FFPE-ID-281.skyd

11 May 2020 15:40:57,445 INFO : Expanding CPDR-FFPE-ID-281.sky.view

11 May 2020 15:40:57,445 INFO : Expanding CPDR-FFPE-ID-281.sky

11 May 2020 15:40:57,797 INFO : Inserting TFF3

11 May 2020 15:40:57,802 INFO : 1% Done

11 May 2020 15:40:57,922 INFO : 2% Done

11 May 2020 15:40:58,034 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:58,035 INFO : Inserting AKT1

11 May 2020 15:40:58,036 INFO : 3% Done

11 May 2020 15:40:58,137 INFO : 4% Done

11 May 2020 15:40:58,225 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:58,225 INFO : Inserting AMACR

11 May 2020 15:40:58,227 INFO : 5% Done

11 May 2020 15:40:58,321 INFO : 6% Done

11 May 2020 15:40:58,409 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:58,409 INFO : Inserting ANDR

11 May 2020 15:40:58,412 INFO : 7% Done

11 May 2020 15:40:58,512 INFO : 8% Done

11 May 2020 15:40:58,629 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:58,629 INFO : Inserting ANXA2

11 May 2020 15:40:58,774 INFO : 9% Done

11 May 2020 15:40:58,918 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:58,918 INFO : Inserting AURKA

11 May 2020 15:40:58,920 INFO : 10% Done

11 May 2020 15:40:59,057 INFO : 11% Done

11 May 2020 15:40:59,181 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:59,182 INFO : Inserting BRAF

11 May 2020 15:40:59,184 INFO : 12% Done

11 May 2020 15:40:59,289 INFO : 13% Done

11 May 2020 15:40:59,425 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:59,425 INFO : Inserting CAMKK2

11 May 2020 15:40:59,428 INFO : 14% Done

11 May 2020 15:40:59,573 INFO : 15% Done

11 May 2020 15:40:59,682 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:59,682 INFO : Inserting CCND1

11 May 2020 15:40:59,684 INFO : 16% Done

11 May 2020 15:40:59,926 DEBUG: Total peptides inserted: 2

11 May 2020 15:40:59,926 INFO : Inserting CDN1A

11 May 2020 15:40:59,930 INFO : 17% Done

11 May 2020 15:41:00,060 INFO : 18% Done

11 May 2020 15:41:00,188 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:00,188 INFO : Inserting CRISP3

11 May 2020 15:41:00,191 INFO : 19% Done

11 May 2020 15:41:00,294 INFO : 20% Done

11 May 2020 15:41:00,415 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:00,415 INFO : Inserting DCOR

11 May 2020 15:41:00,424 INFO : 21% Done

11 May 2020 15:41:00,527 INFO : 22% Done

11 May 2020 15:41:00,641 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:00,641 INFO : Inserting EGFR

11 May 2020 15:41:00,643 INFO : 23% Done

11 May 2020 15:41:00,758 INFO : 24% Done

11 May 2020 15:41:00,851 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:00,851 INFO : Inserting EZH2

11 May 2020 15:41:00,853 INFO : 25% Done

11 May 2020 15:41:01,087 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:01,087 INFO : Inserting FGFR1

11 May 2020 15:41:01,204 INFO : 26% Done

11 May 2020 15:41:01,306 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:01,306 INFO : Inserting FOLH1

11 May 2020 15:41:01,308 INFO : 27% Done

11 May 2020 15:41:01,411 INFO : 28% Done

11 May 2020 15:41:02,026 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:02,099 INFO : Inserting HIF1A

11 May 2020 15:41:02,105 INFO : 29% Done

11 May 2020 15:41:02,208 INFO : 30% Done

11 May 2020 15:41:02,330 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:02,331 INFO : Inserting HPN

11 May 2020 15:41:02,333 INFO : 31% Done

11 May 2020 15:41:02,431 INFO : 32% Done

11 May 2020 15:41:02,528 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:02,529 INFO : Inserting HSPB1

11 May 2020 15:41:02,531 INFO : 33% Done

11 May 2020 15:41:02,646 INFO : 34% Done

11 May 2020 15:41:02,735 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:02,735 INFO : Inserting HXC6

11 May 2020 15:41:02,737 INFO : 35% Done

11 May 2020 15:41:02,831 INFO : 36% Done

11 May 2020 15:41:02,942 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:02,942 INFO : Inserting KLK11

11 May 2020 15:41:02,946 INFO : 37% Done

11 May 2020 15:41:03,197 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:03,197 INFO : Inserting KLK2

11 May 2020 15:41:03,199 INFO : 38% Done

11 May 2020 15:41:03,300 INFO : 39% Done

11 May 2020 15:41:03,402 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:03,402 INFO : Inserting MMP2

11 May 2020 15:41:03,404 INFO : 40% Done

11 May 2020 15:41:03,505 INFO : 41% Done

11 May 2020 15:41:03,583 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:03,584 INFO : Inserting MMP9

11 May 2020 15:41:03,586 INFO : 42% Done

11 May 2020 15:41:03,686 INFO : 43% Done

11 May 2020 15:41:03,834 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:03,834 INFO : Inserting MUC1

11 May 2020 15:41:03,836 INFO : 44% Done

11 May 2020 15:41:03,937 INFO : 45% Done

11 May 2020 15:41:04,036 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:04,036 INFO : Inserting MUC6

11 May 2020 15:41:04,143 INFO : 46% Done

11 May 2020 15:41:04,242 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:04,242 INFO : Inserting MYC

11 May 2020 15:41:04,245 INFO : 47% Done

11 May 2020 15:41:04,346 INFO : 48% Done

11 May 2020 15:41:04,447 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:04,447 INFO : Inserting MYCN

11 May 2020 15:41:04,449 INFO : 49% Done

11 May 2020 15:41:04,552 INFO : 50% Done

11 May 2020 15:41:04,658 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:04,658 INFO : Inserting MYO6

11 May 2020 15:41:04,661 INFO : 51% Done

11 May 2020 15:41:04,762 INFO : 52% Done

11 May 2020 15:41:04,860 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:04,860 INFO : Inserting NCOA2

11 May 2020 15:41:04,862 INFO : 53% Done

11 May 2020 15:41:04,968 INFO : 54% Done

11 May 2020 15:41:05,066 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:05,066 INFO : Inserting NPY

11 May 2020 15:41:05,068 INFO : 55% Done

11 May 2020 15:41:05,167 INFO : 56% Done

11 May 2020 15:41:05,270 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:05,270 INFO : Inserting O51E2

11 May 2020 15:41:05,351 INFO : 57% Done

11 May 2020 15:41:05,449 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:05,449 INFO : Inserting OSTP

11 May 2020 15:41:05,451 INFO : 58% Done

11 May 2020 15:41:05,558 INFO : 59% Done

11 May 2020 15:41:05,656 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:05,656 INFO : Inserting P53

11 May 2020 15:41:05,658 INFO : 60% Done

11 May 2020 15:41:05,779 INFO : 61% Done

11 May 2020 15:41:05,878 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:05,878 INFO : Inserting PAFA

11 May 2020 15:41:05,880 INFO : 62% Done

11 May 2020 15:41:06,033 INFO : 63% Done

11 May 2020 15:41:06,155 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:06,155 INFO : Inserting PGFRB

11 May 2020 15:41:06,252 INFO : 64% Done

11 May 2020 15:41:06,360 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:06,360 INFO : Inserting PK3CA

11 May 2020 15:41:06,362 INFO : 65% Done

11 May 2020 15:41:06,473 INFO : 66% Done

11 May 2020 15:41:06,575 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:06,575 INFO : Inserting RAF1

11 May 2020 15:41:06,578 INFO : 67% Done

11 May 2020 15:41:06,688 INFO : 68% Done

11 May 2020 15:41:06,769 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:06,769 INFO : Inserting SERPINI1

11 May 2020 15:41:06,772 INFO : 69% Done

11 May 2020 15:41:06,983 INFO : 70% Done

11 May 2020 15:41:07,094 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:07,094 INFO : Inserting SPINK1

11 May 2020 15:41:07,097 INFO : 71% Done

11 May 2020 15:41:07,249 INFO : 72% Done

11 May 2020 15:41:07,376 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:07,376 INFO : Inserting SPRC

11 May 2020 15:41:07,500 INFO : 73% Done

11 May 2020 15:41:07,608 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:07,608 INFO : Inserting TGFB1

11 May 2020 15:41:07,611 INFO : 74% Done

11 May 2020 15:41:07,843 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:07,843 INFO : Inserting TMPS2

11 May 2020 15:41:07,845 INFO : 75% Done

11 May 2020 15:41:07,963 INFO : 76% Done

11 May 2020 15:41:08,077 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:08,077 INFO : Inserting TPM2

11 May 2020 15:41:08,079 INFO : 77% Done

11 May 2020 15:41:08,199 INFO : 78% Done

11 May 2020 15:41:08,301 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:08,301 INFO : Inserting TWST1

11 May 2020 15:41:08,304 INFO : 79% Done

11 May 2020 15:41:08,418 INFO : 80% Done

11 May 2020 15:41:08,516 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:08,517 INFO : Inserting VEGFA

11 May 2020 15:41:08,520 INFO : 81% Done

11 May 2020 15:41:08,630 INFO : 82% Done

11 May 2020 15:41:08,735 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:08,735 INFO : Inserting PSA

11 May 2020 15:41:08,737 INFO : 83% Done

11 May 2020 15:41:08,856 INFO : 84% Done

11 May 2020 15:41:08,967 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:08,967 INFO : Inserting ERG_pan

11 May 2020 15:41:09,111 INFO : 85% Done

11 May 2020 15:41:09,227 INFO : 86% Done

11 May 2020 15:41:09,320 INFO : 87% Done

11 May 2020 15:41:09,409 INFO : 88% Done

11 May 2020 15:41:09,519 INFO : 89% Done

11 May 2020 15:41:09,643 INFO : 90% Done

11 May 2020 15:41:09,749 DEBUG: Total peptides inserted: 7

11 May 2020 15:41:09,749 INFO : Inserting ETV1

11 May 2020 15:41:09,751 INFO : 91% Done

11 May 2020 15:41:09,848 INFO : 92% Done

11 May 2020 15:41:09,947 INFO : 93% Done

11 May 2020 15:41:10,043 DEBUG: Total peptides inserted: 3

11 May 2020 15:41:10,043 INFO : Inserting ERG8

11 May 2020 15:41:10,045 INFO : 94% Done

11 May 2020 15:41:10,144 INFO : 95% Done

11 May 2020 15:41:10,240 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:10,240 INFO : Inserting SMAD4

11 May 2020 15:41:10,342 INFO : 96% Done

11 May 2020 15:41:10,420 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:10,420 INFO : Inserting STAT3

11 May 2020 15:41:10,422 INFO : 97% Done

11 May 2020 15:41:10,527 INFO : 98% Done

11 May 2020 15:41:10,635 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:10,636 INFO : Done parsing Skyline document.

11 May 2020 15:41:10,637 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:41:10,703 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:41:11,197 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:41:11,673 INFO : Cleaning up temp tables

11 May 2020 15:41:12,004 INFO : Completed import of Skyline document from CPDR-FFPE-ID-281_2020-01-28_10-44-16.sky.zip

11 May 2020 15:41:12,005 INFO : 100% Done

11 May 2020 15:41:12,012 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80155/CPDR-FFPE-ID-281_2020-01-28_10-44-16.sky.zip into the system

11 May 2020 15:41:12,012 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80154/CPDR-FFPE-ID-260_2020-01-28_10-43-39/CPDR-FFPE-ID-260.skyd into the system

11 May 2020 15:41:12,013 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80154/CPDR-FFPE-ID-260_2020-01-28_10-43-39/CPDR-FFPE-ID-260.skyd into the system

11 May 2020 15:41:12,013 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80154/CPDR-FFPE-ID-260_2020-01-28_10-43-39.sky.zip into the system

11 May 2020 15:41:12,015 INFO : Starting import from CPDR-FFPE-ID-260_2020-01-28_10-43-39.sky.zip

11 May 2020 15:41:12,019 INFO : Starting to import Skyline document from CPDR-FFPE-ID-260_2020-01-28_10-43-39.sky.zip

11 May 2020 15:41:12,026 INFO : Expanding CPDR-FFPE-ID-260.skyd

11 May 2020 15:41:12,224 INFO : Expanding CPDR-FFPE-ID-260.sky.view

11 May 2020 15:41:12,224 INFO : Expanding CPDR-FFPE-ID-260.sky

11 May 2020 15:41:12,619 INFO : Inserting TFF3

11 May 2020 15:41:12,625 INFO : 1% Done

11 May 2020 15:41:12,753 INFO : 2% Done

11 May 2020 15:41:12,851 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:12,851 INFO : Inserting AKT1

11 May 2020 15:41:12,853 INFO : 3% Done

11 May 2020 15:41:12,934 INFO : 4% Done

11 May 2020 15:41:13,069 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:13,069 INFO : Inserting AMACR

11 May 2020 15:41:13,073 INFO : 5% Done

11 May 2020 15:41:13,204 INFO : 6% Done

11 May 2020 15:41:13,352 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:13,352 INFO : Inserting ANDR

11 May 2020 15:41:13,355 INFO : 7% Done

11 May 2020 15:41:13,494 INFO : 8% Done

11 May 2020 15:41:13,638 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:13,638 INFO : Inserting ANXA2

11 May 2020 15:41:13,806 INFO : 9% Done

11 May 2020 15:41:13,921 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:13,921 INFO : Inserting AURKA

11 May 2020 15:41:13,929 INFO : 10% Done

11 May 2020 15:41:14,041 INFO : 11% Done

11 May 2020 15:41:14,140 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:14,140 INFO : Inserting BRAF

11 May 2020 15:41:14,142 INFO : 12% Done

11 May 2020 15:41:14,244 INFO : 13% Done

11 May 2020 15:41:14,367 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:14,367 INFO : Inserting CAMKK2

11 May 2020 15:41:14,370 INFO : 14% Done

11 May 2020 15:41:14,530 INFO : 15% Done

11 May 2020 15:41:14,683 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:14,683 INFO : Inserting CCND1

11 May 2020 15:41:14,686 INFO : 16% Done

11 May 2020 15:41:14,868 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:14,868 INFO : Inserting CDN1A

11 May 2020 15:41:14,870 INFO : 17% Done

11 May 2020 15:41:15,003 INFO : 18% Done

11 May 2020 15:41:15,106 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:15,106 INFO : Inserting CRISP3

11 May 2020 15:41:15,108 INFO : 19% Done

11 May 2020 15:41:15,229 INFO : 20% Done

11 May 2020 15:41:15,363 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:15,363 INFO : Inserting DCOR

11 May 2020 15:41:15,367 INFO : 21% Done

11 May 2020 15:41:15,545 INFO : 22% Done

11 May 2020 15:41:15,703 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:15,703 INFO : Inserting EGFR

11 May 2020 15:41:15,705 INFO : 23% Done

11 May 2020 15:41:15,818 INFO : 24% Done

11 May 2020 15:41:15,919 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:15,919 INFO : Inserting EZH2

11 May 2020 15:41:15,921 INFO : 25% Done

11 May 2020 15:41:16,158 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:16,158 INFO : Inserting FGFR1

11 May 2020 15:41:16,330 INFO : 26% Done

11 May 2020 15:41:16,459 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:16,459 INFO : Inserting FOLH1

11 May 2020 15:41:16,461 INFO : 27% Done

11 May 2020 15:41:16,592 INFO : 28% Done

11 May 2020 15:41:16,692 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:16,693 INFO : Inserting HIF1A

11 May 2020 15:41:16,695 INFO : 29% Done

11 May 2020 15:41:16,803 INFO : 30% Done

11 May 2020 15:41:16,940 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:16,940 INFO : Inserting HPN

11 May 2020 15:41:16,943 INFO : 31% Done

11 May 2020 15:41:17,052 INFO : 32% Done

11 May 2020 15:41:17,160 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:17,160 INFO : Inserting HSPB1

11 May 2020 15:41:17,162 INFO : 33% Done

11 May 2020 15:41:17,266 INFO : 34% Done

11 May 2020 15:41:17,383 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:17,383 INFO : Inserting HXC6

11 May 2020 15:41:17,385 INFO : 35% Done

11 May 2020 15:41:17,491 INFO : 36% Done

11 May 2020 15:41:17,596 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:17,596 INFO : Inserting KLK11

11 May 2020 15:41:17,710 INFO : 37% Done

11 May 2020 15:41:17,813 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:17,813 INFO : Inserting KLK2

11 May 2020 15:41:17,815 INFO : 38% Done

11 May 2020 15:41:17,945 INFO : 39% Done

11 May 2020 15:41:18,060 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:18,060 INFO : Inserting MMP2

11 May 2020 15:41:18,062 INFO : 40% Done

11 May 2020 15:41:18,509 INFO : 41% Done

11 May 2020 15:41:18,610 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:18,610 INFO : Inserting MMP9

11 May 2020 15:41:18,613 INFO : 42% Done

11 May 2020 15:41:18,724 INFO : 43% Done

11 May 2020 15:41:18,838 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:18,839 INFO : Inserting MUC1

11 May 2020 15:41:18,841 INFO : 44% Done

11 May 2020 15:41:18,941 INFO : 45% Done

11 May 2020 15:41:19,086 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:19,086 INFO : Inserting MUC6

11 May 2020 15:41:19,089 INFO : 46% Done

11 May 2020 15:41:19,356 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:19,357 INFO : Inserting MYC

11 May 2020 15:41:19,364 INFO : 47% Done

11 May 2020 15:41:19,469 INFO : 48% Done

11 May 2020 15:41:19,559 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:19,559 INFO : Inserting MYCN

11 May 2020 15:41:19,561 INFO : 49% Done

11 May 2020 15:41:19,666 INFO : 50% Done

11 May 2020 15:41:19,768 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:19,768 INFO : Inserting MYO6

11 May 2020 15:41:19,770 INFO : 51% Done

11 May 2020 15:41:19,905 INFO : 52% Done

11 May 2020 15:41:20,040 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:20,041 INFO : Inserting NCOA2

11 May 2020 15:41:20,043 INFO : 53% Done

11 May 2020 15:41:20,144 INFO : 54% Done

11 May 2020 15:41:20,299 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:20,299 INFO : Inserting NPY

11 May 2020 15:41:20,302 INFO : 55% Done

11 May 2020 15:41:20,450 INFO : 56% Done

11 May 2020 15:41:20,550 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:20,550 INFO : Inserting O51E2

11 May 2020 15:41:20,629 INFO : 57% Done

11 May 2020 15:41:20,724 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:20,724 INFO : Inserting OSTP

11 May 2020 15:41:20,726 INFO : 58% Done

11 May 2020 15:41:20,859 INFO : 59% Done

11 May 2020 15:41:20,986 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:20,986 INFO : Inserting P53

11 May 2020 15:41:20,988 INFO : 60% Done

11 May 2020 15:41:21,088 INFO : 61% Done

11 May 2020 15:41:21,187 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:21,187 INFO : Inserting PAFA

11 May 2020 15:41:21,189 INFO : 62% Done

11 May 2020 15:41:21,277 INFO : 63% Done

11 May 2020 15:41:21,372 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:21,372 INFO : Inserting PGFRB

11 May 2020 15:41:21,486 INFO : 64% Done

11 May 2020 15:41:21,616 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:21,616 INFO : Inserting PK3CA

11 May 2020 15:41:21,618 INFO : 65% Done

11 May 2020 15:41:21,739 INFO : 66% Done

11 May 2020 15:41:21,833 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:21,833 INFO : Inserting RAF1

11 May 2020 15:41:21,835 INFO : 67% Done

11 May 2020 15:41:21,922 INFO : 68% Done

11 May 2020 15:41:21,992 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:21,992 INFO : Inserting SERPINI1

11 May 2020 15:41:21,994 INFO : 69% Done

11 May 2020 15:41:22,093 INFO : 70% Done

11 May 2020 15:41:22,192 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:22,192 INFO : Inserting SPINK1

11 May 2020 15:41:22,194 INFO : 71% Done

11 May 2020 15:41:22,292 INFO : 72% Done

11 May 2020 15:41:22,381 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:22,382 INFO : Inserting SPRC

11 May 2020 15:41:22,475 INFO : 73% Done

11 May 2020 15:41:22,564 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:22,564 INFO : Inserting TGFB1

11 May 2020 15:41:22,566 INFO : 74% Done

11 May 2020 15:41:22,759 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:22,759 INFO : Inserting TMPS2

11 May 2020 15:41:22,761 INFO : 75% Done

11 May 2020 15:41:22,849 INFO : 76% Done

11 May 2020 15:41:23,012 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:23,012 INFO : Inserting TPM2

11 May 2020 15:41:23,016 INFO : 77% Done

11 May 2020 15:41:23,164 INFO : 78% Done

11 May 2020 15:41:23,268 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:23,268 INFO : Inserting TWST1

11 May 2020 15:41:23,270 INFO : 79% Done

11 May 2020 15:41:23,374 INFO : 80% Done

11 May 2020 15:41:23,476 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:23,476 INFO : Inserting VEGFA

11 May 2020 15:41:23,478 INFO : 81% Done

11 May 2020 15:41:23,593 INFO : 82% Done

11 May 2020 15:41:23,751 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:23,751 INFO : Inserting PSA

11 May 2020 15:41:23,753 INFO : 83% Done

11 May 2020 15:41:23,964 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:23,965 INFO : Inserting ERG_pan

11 May 2020 15:41:23,967 INFO : 84% Done

11 May 2020 15:41:24,071 INFO : 85% Done

11 May 2020 15:41:24,200 INFO : 86% Done

11 May 2020 15:41:24,360 INFO : 87% Done

11 May 2020 15:41:24,518 INFO : 88% Done

11 May 2020 15:41:24,634 INFO : 89% Done

11 May 2020 15:41:24,738 INFO : 90% Done

11 May 2020 15:41:24,865 DEBUG: Total peptides inserted: 7

11 May 2020 15:41:24,865 INFO : Inserting ETV1

11 May 2020 15:41:24,867 INFO : 91% Done

11 May 2020 15:41:24,970 INFO : 92% Done

11 May 2020 15:41:25,116 INFO : 93% Done

11 May 2020 15:41:25,223 DEBUG: Total peptides inserted: 3

11 May 2020 15:41:25,223 INFO : Inserting ERG8

11 May 2020 15:41:25,225 INFO : 94% Done

11 May 2020 15:41:25,327 INFO : 95% Done

11 May 2020 15:41:25,428 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:25,428 INFO : Inserting SMAD4

11 May 2020 15:41:25,430 INFO : 96% Done

11 May 2020 15:41:25,619 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:25,619 INFO : Inserting STAT3

11 May 2020 15:41:25,621 INFO : 97% Done

11 May 2020 15:41:25,738 INFO : 98% Done

11 May 2020 15:41:25,837 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:25,837 INFO : Done parsing Skyline document.

11 May 2020 15:41:25,838 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:41:25,919 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:41:26,663 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:41:27,057 INFO : Cleaning up temp tables

11 May 2020 15:41:27,364 INFO : Completed import of Skyline document from CPDR-FFPE-ID-260_2020-01-28_10-43-39.sky.zip

11 May 2020 15:41:27,365 INFO : 100% Done

11 May 2020 15:41:27,371 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80154/CPDR-FFPE-ID-260_2020-01-28_10-43-39.sky.zip into the system

11 May 2020 15:41:27,371 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80140/CPDR-FFPE-ID-234_2020-01-28_10-34-56/CPDR-FFPE-ID-234.skyd into the system

11 May 2020 15:41:27,372 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80140/CPDR-FFPE-ID-234_2020-01-28_10-34-56/CPDR-FFPE-ID-234.skyd into the system

11 May 2020 15:41:27,372 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80140/CPDR-FFPE-ID-234_2020-01-28_10-34-56.sky.zip into the system

11 May 2020 15:41:27,374 INFO : Starting import from CPDR-FFPE-ID-234_2020-01-28_10-34-56.sky.zip

11 May 2020 15:41:27,378 INFO : Starting to import Skyline document from CPDR-FFPE-ID-234_2020-01-28_10-34-56.sky.zip

11 May 2020 15:41:27,387 INFO : Expanding CPDR-FFPE-ID-234.skyd

11 May 2020 15:41:27,572 INFO : Expanding CPDR-FFPE-ID-234.sky.view

11 May 2020 15:41:27,572 INFO : Expanding CPDR-FFPE-ID-234.sky

11 May 2020 15:41:28,095 INFO : Inserting TFF3

11 May 2020 15:41:28,099 INFO : 1% Done

11 May 2020 15:41:28,229 INFO : 2% Done

11 May 2020 15:41:28,358 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:28,359 INFO : Inserting AKT1

11 May 2020 15:41:28,360 INFO : 3% Done

11 May 2020 15:41:28,462 INFO : 4% Done

11 May 2020 15:41:28,577 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:28,577 INFO : Inserting AMACR

11 May 2020 15:41:28,580 INFO : 5% Done

11 May 2020 15:41:28,684 INFO : 6% Done

11 May 2020 15:41:28,820 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:28,820 INFO : Inserting ANDR

11 May 2020 15:41:28,822 INFO : 7% Done

11 May 2020 15:41:28,958 INFO : 8% Done

11 May 2020 15:41:29,083 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:29,083 INFO : Inserting ANXA2

11 May 2020 15:41:29,196 INFO : 9% Done

11 May 2020 15:41:29,308 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:29,308 INFO : Inserting AURKA

11 May 2020 15:41:29,310 INFO : 10% Done

11 May 2020 15:41:29,436 INFO : 11% Done

11 May 2020 15:41:29,538 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:29,538 INFO : Inserting BRAF

11 May 2020 15:41:29,540 INFO : 12% Done

11 May 2020 15:41:29,647 INFO : 13% Done

11 May 2020 15:41:29,736 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:29,736 INFO : Inserting CAMKK2

11 May 2020 15:41:29,738 INFO : 14% Done

11 May 2020 15:41:29,856 INFO : 15% Done

11 May 2020 15:41:29,982 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:29,983 INFO : Inserting CCND1

11 May 2020 15:41:29,986 INFO : 16% Done

11 May 2020 15:41:30,209 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:30,209 INFO : Inserting CDN1A

11 May 2020 15:41:30,211 INFO : 17% Done

11 May 2020 15:41:30,339 INFO : 18% Done

11 May 2020 15:41:30,478 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:30,478 INFO : Inserting CRISP3

11 May 2020 15:41:30,480 INFO : 19% Done

11 May 2020 15:41:30,578 INFO : 20% Done

11 May 2020 15:41:30,675 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:30,676 INFO : Inserting DCOR

11 May 2020 15:41:30,678 INFO : 21% Done

11 May 2020 15:41:30,776 INFO : 22% Done

11 May 2020 15:41:30,892 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:30,893 INFO : Inserting EGFR

11 May 2020 15:41:30,896 INFO : 23% Done

11 May 2020 15:41:31,050 INFO : 24% Done

11 May 2020 15:41:31,155 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:31,155 INFO : Inserting EZH2

11 May 2020 15:41:31,157 INFO : 25% Done

11 May 2020 15:41:31,367 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:31,367 INFO : Inserting FGFR1

11 May 2020 15:41:31,476 INFO : 26% Done

11 May 2020 15:41:31,578 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:31,578 INFO : Inserting FOLH1

11 May 2020 15:41:31,580 INFO : 27% Done

11 May 2020 15:41:31,680 INFO : 28% Done

11 May 2020 15:41:31,773 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:31,773 INFO : Inserting HIF1A

11 May 2020 15:41:31,775 INFO : 29% Done

11 May 2020 15:41:31,873 INFO : 30% Done

11 May 2020 15:41:32,006 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:32,006 INFO : Inserting HPN

11 May 2020 15:41:32,008 INFO : 31% Done

11 May 2020 15:41:32,148 INFO : 32% Done

11 May 2020 15:41:32,259 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:32,259 INFO : Inserting HSPB1

11 May 2020 15:41:32,262 INFO : 33% Done

11 May 2020 15:41:32,373 INFO : 34% Done

11 May 2020 15:41:32,475 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:32,475 INFO : Inserting HXC6

11 May 2020 15:41:32,478 INFO : 35% Done

11 May 2020 15:41:32,581 INFO : 36% Done

11 May 2020 15:41:32,679 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:32,679 INFO : Inserting KLK11

11 May 2020 15:41:32,784 INFO : 37% Done

11 May 2020 15:41:32,889 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:32,889 INFO : Inserting KLK2

11 May 2020 15:41:32,891 INFO : 38% Done

11 May 2020 15:41:33,062 INFO : 39% Done

11 May 2020 15:41:33,161 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:33,161 INFO : Inserting MMP2

11 May 2020 15:41:33,163 INFO : 40% Done

11 May 2020 15:41:33,316 INFO : 41% Done

11 May 2020 15:41:33,440 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:33,440 INFO : Inserting MMP9

11 May 2020 15:41:33,443 INFO : 42% Done

11 May 2020 15:41:33,576 INFO : 43% Done

11 May 2020 15:41:33,684 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:33,685 INFO : Inserting MUC1

11 May 2020 15:41:33,688 INFO : 44% Done

11 May 2020 15:41:33,811 INFO : 45% Done

11 May 2020 15:41:33,913 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:33,913 INFO : Inserting MUC6

11 May 2020 15:41:33,915 INFO : 46% Done

11 May 2020 15:41:34,157 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:34,157 INFO : Inserting MYC

11 May 2020 15:41:34,159 INFO : 47% Done

11 May 2020 15:41:34,282 INFO : 48% Done

11 May 2020 15:41:34,404 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:34,404 INFO : Inserting MYCN

11 May 2020 15:41:34,406 INFO : 49% Done

11 May 2020 15:41:34,513 INFO : 50% Done

11 May 2020 15:41:34,614 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:34,614 INFO : Inserting MYO6

11 May 2020 15:41:34,616 INFO : 51% Done

11 May 2020 15:41:34,732 INFO : 52% Done

11 May 2020 15:41:34,882 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:34,882 INFO : Inserting NCOA2

11 May 2020 15:41:34,885 INFO : 53% Done

11 May 2020 15:41:34,991 INFO : 54% Done

11 May 2020 15:41:35,090 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:35,090 INFO : Inserting NPY

11 May 2020 15:41:35,092 INFO : 55% Done

11 May 2020 15:41:35,216 INFO : 56% Done

11 May 2020 15:41:35,317 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:35,317 INFO : Inserting O51E2

11 May 2020 15:41:35,397 INFO : 57% Done

11 May 2020 15:41:35,488 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:35,488 INFO : Inserting OSTP

11 May 2020 15:41:35,490 INFO : 58% Done

11 May 2020 15:41:35,586 INFO : 59% Done

11 May 2020 15:41:35,704 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:35,704 INFO : Inserting P53

11 May 2020 15:41:35,707 INFO : 60% Done

11 May 2020 15:41:35,855 INFO : 61% Done

11 May 2020 15:41:35,984 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:35,984 INFO : Inserting PAFA

11 May 2020 15:41:35,986 INFO : 62% Done

11 May 2020 15:41:36,106 INFO : 63% Done

11 May 2020 15:41:36,251 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:36,251 INFO : Inserting PGFRB

11 May 2020 15:41:36,353 INFO : 64% Done

11 May 2020 15:41:36,449 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:36,449 INFO : Inserting PK3CA

11 May 2020 15:41:36,451 INFO : 65% Done

11 May 2020 15:41:36,602 INFO : 66% Done

11 May 2020 15:41:36,731 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:36,731 INFO : Inserting RAF1

11 May 2020 15:41:36,734 INFO : 67% Done

11 May 2020 15:41:36,855 INFO : 68% Done

11 May 2020 15:41:36,944 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:36,944 INFO : Inserting SERPINI1

11 May 2020 15:41:36,946 INFO : 69% Done

11 May 2020 15:41:37,061 INFO : 70% Done

11 May 2020 15:41:37,210 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:37,210 INFO : Inserting SPINK1

11 May 2020 15:41:37,213 INFO : 71% Done

11 May 2020 15:41:37,367 INFO : 72% Done

11 May 2020 15:41:37,495 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:37,495 INFO : Inserting SPRC

11 May 2020 15:41:37,498 INFO : 73% Done

11 May 2020 15:41:37,710 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:37,710 INFO : Inserting TGFB1

11 May 2020 15:41:37,712 INFO : 74% Done

11 May 2020 15:41:37,907 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:37,907 INFO : Inserting TMPS2

11 May 2020 15:41:37,909 INFO : 75% Done

11 May 2020 15:41:38,009 INFO : 76% Done

11 May 2020 15:41:38,164 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:38,164 INFO : Inserting TPM2

11 May 2020 15:41:38,168 INFO : 77% Done

11 May 2020 15:41:38,315 INFO : 78% Done

11 May 2020 15:41:38,453 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:38,453 INFO : Inserting TWST1

11 May 2020 15:41:38,456 INFO : 79% Done

11 May 2020 15:41:38,577 INFO : 80% Done

11 May 2020 15:41:38,682 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:38,682 INFO : Inserting VEGFA

11 May 2020 15:41:38,685 INFO : 81% Done

11 May 2020 15:41:38,789 INFO : 82% Done

11 May 2020 15:41:38,890 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:38,890 INFO : Inserting PSA

11 May 2020 15:41:38,894 INFO : 83% Done

11 May 2020 15:41:39,099 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:39,099 INFO : Inserting ERG_pan

11 May 2020 15:41:39,102 INFO : 84% Done

11 May 2020 15:41:39,247 INFO : 85% Done

11 May 2020 15:41:39,355 INFO : 86% Done

11 May 2020 15:41:39,463 INFO : 87% Done

11 May 2020 15:41:39,573 INFO : 88% Done

11 May 2020 15:41:39,678 INFO : 89% Done

11 May 2020 15:41:39,782 INFO : 90% Done

11 May 2020 15:41:39,887 DEBUG: Total peptides inserted: 7

11 May 2020 15:41:39,887 INFO : Inserting ETV1

11 May 2020 15:41:39,890 INFO : 91% Done

11 May 2020 15:41:40,041 INFO : 92% Done

11 May 2020 15:41:40,185 INFO : 93% Done

11 May 2020 15:41:40,314 DEBUG: Total peptides inserted: 3

11 May 2020 15:41:40,314 INFO : Inserting ERG8

11 May 2020 15:41:40,316 INFO : 94% Done

11 May 2020 15:41:40,706 INFO : 95% Done

11 May 2020 15:41:40,803 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:40,929 INFO : Inserting SMAD4

11 May 2020 15:41:41,284 INFO : 96% Done

11 May 2020 15:41:41,427 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:41,428 INFO : Inserting STAT3

11 May 2020 15:41:41,431 INFO : 97% Done

11 May 2020 15:41:41,536 INFO : 98% Done

11 May 2020 15:41:41,632 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:41,632 INFO : Done parsing Skyline document.

11 May 2020 15:41:41,633 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:41:41,701 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:41:42,180 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:41:42,371 INFO : Cleaning up temp tables

11 May 2020 15:41:42,799 INFO : Completed import of Skyline document from CPDR-FFPE-ID-234_2020-01-28_10-34-56.sky.zip

11 May 2020 15:41:42,800 INFO : 100% Done

11 May 2020 15:41:42,806 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80140/CPDR-FFPE-ID-234_2020-01-28_10-34-56.sky.zip into the system

11 May 2020 15:41:42,806 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80133/CPDR-FFPE-ID-267_2020-01-28_10-30-41/CPDR-FFPE-ID-267.skyd into the system

11 May 2020 15:41:42,808 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80133/CPDR-FFPE-ID-267_2020-01-28_10-30-41/CPDR-FFPE-ID-267.skyd into the system

11 May 2020 15:41:42,808 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80133/CPDR-FFPE-ID-267_2020-01-28_10-30-41.sky.zip into the system

11 May 2020 15:41:42,811 INFO : Starting import from CPDR-FFPE-ID-267_2020-01-28_10-30-41.sky.zip

11 May 2020 15:41:42,814 INFO : Starting to import Skyline document from CPDR-FFPE-ID-267_2020-01-28_10-30-41.sky.zip

11 May 2020 15:41:42,828 INFO : Expanding CPDR-FFPE-ID-267.skyd

11 May 2020 15:41:43,143 INFO : Expanding CPDR-FFPE-ID-267.sky.view

11 May 2020 15:41:43,143 INFO : Expanding CPDR-FFPE-ID-267.sky

11 May 2020 15:41:43,635 INFO : Inserting TFF3

11 May 2020 15:41:43,639 INFO : 1% Done

11 May 2020 15:41:43,745 INFO : 2% Done

11 May 2020 15:41:43,906 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:43,906 INFO : Inserting AKT1

11 May 2020 15:41:43,908 INFO : 3% Done

11 May 2020 15:41:43,989 INFO : 4% Done

11 May 2020 15:41:44,137 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:44,137 INFO : Inserting AMACR

11 May 2020 15:41:44,140 INFO : 5% Done

11 May 2020 15:41:44,230 INFO : 6% Done

11 May 2020 15:41:44,327 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:44,327 INFO : Inserting ANDR

11 May 2020 15:41:44,337 INFO : 7% Done

11 May 2020 15:41:44,558 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:44,558 INFO : Inserting ANXA2

11 May 2020 15:41:44,560 INFO : 8% Done

11 May 2020 15:41:44,677 INFO : 9% Done

11 May 2020 15:41:44,786 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:44,786 INFO : Inserting AURKA

11 May 2020 15:41:44,788 INFO : 10% Done

11 May 2020 15:41:44,912 INFO : 11% Done

11 May 2020 15:41:45,022 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:45,022 INFO : Inserting BRAF

11 May 2020 15:41:45,024 INFO : 12% Done

11 May 2020 15:41:45,115 INFO : 13% Done

11 May 2020 15:41:45,240 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:45,240 INFO : Inserting CAMKK2

11 May 2020 15:41:45,243 INFO : 14% Done

11 May 2020 15:41:45,375 INFO : 15% Done

11 May 2020 15:41:45,472 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:45,472 INFO : Inserting CCND1

11 May 2020 15:41:45,475 INFO : 16% Done

11 May 2020 15:41:45,579 INFO : 17% Done

11 May 2020 15:41:45,655 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:45,655 INFO : Inserting CDN1A

11 May 2020 15:41:45,748 INFO : 18% Done

11 May 2020 15:41:45,837 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:45,837 INFO : Inserting CRISP3

11 May 2020 15:41:45,839 INFO : 19% Done

11 May 2020 15:41:45,938 INFO : 20% Done

11 May 2020 15:41:46,038 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:46,038 INFO : Inserting DCOR

11 May 2020 15:41:46,041 INFO : 21% Done

11 May 2020 15:41:46,158 INFO : 22% Done

11 May 2020 15:41:46,286 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:46,286 INFO : Inserting EGFR

11 May 2020 15:41:46,288 INFO : 23% Done

11 May 2020 15:41:46,417 INFO : 24% Done

11 May 2020 15:41:46,502 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:46,503 INFO : Inserting EZH2

11 May 2020 15:41:46,505 INFO : 25% Done

11 May 2020 15:41:46,711 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:46,711 INFO : Inserting FGFR1

11 May 2020 15:41:46,812 INFO : 26% Done

11 May 2020 15:41:46,922 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:46,922 INFO : Inserting FOLH1

11 May 2020 15:41:46,924 INFO : 27% Done

11 May 2020 15:41:47,024 INFO : 28% Done

11 May 2020 15:41:47,122 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:47,123 INFO : Inserting HIF1A

11 May 2020 15:41:47,124 INFO : 29% Done

11 May 2020 15:41:47,227 INFO : 30% Done

11 May 2020 15:41:47,330 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:47,330 INFO : Inserting HPN

11 May 2020 15:41:47,332 INFO : 31% Done

11 May 2020 15:41:47,431 INFO : 32% Done

11 May 2020 15:41:47,529 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:47,529 INFO : Inserting HSPB1

11 May 2020 15:41:47,531 INFO : 33% Done

11 May 2020 15:41:47,630 INFO : 34% Done

11 May 2020 15:41:47,727 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:47,727 INFO : Inserting HXC6

11 May 2020 15:41:47,729 INFO : 35% Done

11 May 2020 15:41:47,835 INFO : 36% Done

11 May 2020 15:41:47,931 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:47,931 INFO : Inserting KLK11

11 May 2020 15:41:48,033 INFO : 37% Done

11 May 2020 15:41:48,131 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:48,132 INFO : Inserting KLK2

11 May 2020 15:41:48,134 INFO : 38% Done

11 May 2020 15:41:48,231 INFO : 39% Done

11 May 2020 15:41:48,331 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:48,331 INFO : Inserting MMP2

11 May 2020 15:41:48,333 INFO : 40% Done

11 May 2020 15:41:48,435 INFO : 41% Done

11 May 2020 15:41:48,512 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:48,512 INFO : Inserting MMP9

11 May 2020 15:41:48,514 INFO : 42% Done

11 May 2020 15:41:48,613 INFO : 43% Done

11 May 2020 15:41:48,709 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:48,709 INFO : Inserting MUC1

11 May 2020 15:41:48,711 INFO : 44% Done

11 May 2020 15:41:48,810 INFO : 45% Done

11 May 2020 15:41:48,907 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:48,907 INFO : Inserting MUC6

11 May 2020 15:41:49,014 INFO : 46% Done

11 May 2020 15:41:49,123 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:49,123 INFO : Inserting MYC

11 May 2020 15:41:49,126 INFO : 47% Done

11 May 2020 15:41:49,228 INFO : 48% Done

11 May 2020 15:41:49,326 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:49,326 INFO : Inserting MYCN

11 May 2020 15:41:49,328 INFO : 49% Done

11 May 2020 15:41:49,428 INFO : 50% Done

11 May 2020 15:41:49,524 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:49,524 INFO : Inserting MYO6

11 May 2020 15:41:49,526 INFO : 51% Done

11 May 2020 15:41:49,626 INFO : 52% Done

11 May 2020 15:41:49,729 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:49,729 INFO : Inserting NCOA2

11 May 2020 15:41:49,731 INFO : 53% Done

11 May 2020 15:41:49,823 INFO : 54% Done

11 May 2020 15:41:49,917 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:49,917 INFO : Inserting NPY

11 May 2020 15:41:49,919 INFO : 55% Done

11 May 2020 15:41:50,017 INFO : 56% Done

11 May 2020 15:41:50,107 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:50,108 INFO : Inserting O51E2

11 May 2020 15:41:50,184 INFO : 57% Done

11 May 2020 15:41:50,271 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:50,271 INFO : Inserting OSTP

11 May 2020 15:41:50,273 INFO : 58% Done

11 May 2020 15:41:50,362 INFO : 59% Done

11 May 2020 15:41:50,449 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:50,449 INFO : Inserting P53

11 May 2020 15:41:50,451 INFO : 60% Done

11 May 2020 15:41:50,543 INFO : 61% Done

11 May 2020 15:41:50,630 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:50,630 INFO : Inserting PAFA

11 May 2020 15:41:50,633 INFO : 62% Done

11 May 2020 15:41:50,728 INFO : 63% Done

11 May 2020 15:41:50,815 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:50,816 INFO : Inserting PGFRB

11 May 2020 15:41:50,891 INFO : 64% Done

11 May 2020 15:41:50,977 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:50,977 INFO : Inserting PK3CA

11 May 2020 15:41:50,979 INFO : 65% Done

11 May 2020 15:41:51,068 INFO : 66% Done

11 May 2020 15:41:51,173 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:51,173 INFO : Inserting RAF1

11 May 2020 15:41:51,175 INFO : 67% Done

11 May 2020 15:41:51,264 INFO : 68% Done

11 May 2020 15:41:51,334 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:51,334 INFO : Inserting SERPINI1

11 May 2020 15:41:51,336 INFO : 69% Done

11 May 2020 15:41:51,426 INFO : 70% Done

11 May 2020 15:41:51,545 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:51,545 INFO : Inserting SPINK1

11 May 2020 15:41:51,547 INFO : 71% Done

11 May 2020 15:41:51,648 INFO : 72% Done

11 May 2020 15:41:51,753 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:51,753 INFO : Inserting SPRC

11 May 2020 15:41:51,755 INFO : 73% Done

11 May 2020 15:41:51,953 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:51,953 INFO : Inserting TGFB1

11 May 2020 15:41:51,955 INFO : 74% Done

11 May 2020 15:41:52,152 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:52,152 INFO : Inserting TMPS2

11 May 2020 15:41:52,154 INFO : 75% Done

11 May 2020 15:41:52,449 INFO : 76% Done

11 May 2020 15:41:52,555 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:52,556 INFO : Inserting TPM2

11 May 2020 15:41:52,558 INFO : 77% Done

11 May 2020 15:41:52,671 INFO : 78% Done

11 May 2020 15:41:52,786 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:52,786 INFO : Inserting TWST1

11 May 2020 15:41:52,788 INFO : 79% Done

11 May 2020 15:41:52,904 INFO : 80% Done

11 May 2020 15:41:53,021 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:53,022 INFO : Inserting VEGFA

11 May 2020 15:41:53,025 INFO : 81% Done

11 May 2020 15:41:53,141 INFO : 82% Done

11 May 2020 15:41:53,230 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:53,230 INFO : Inserting PSA

11 May 2020 15:41:53,232 INFO : 83% Done

11 May 2020 15:41:53,441 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:53,441 INFO : Inserting ERG_pan

11 May 2020 15:41:53,444 INFO : 84% Done

11 May 2020 15:41:53,546 INFO : 85% Done

11 May 2020 15:41:53,650 INFO : 86% Done

11 May 2020 15:41:53,737 INFO : 87% Done

11 May 2020 15:41:53,826 INFO : 88% Done

11 May 2020 15:41:53,921 INFO : 89% Done

11 May 2020 15:41:54,030 INFO : 90% Done

11 May 2020 15:41:54,119 DEBUG: Total peptides inserted: 7

11 May 2020 15:41:54,119 INFO : Inserting ETV1

11 May 2020 15:41:54,121 INFO : 91% Done

11 May 2020 15:41:54,211 INFO : 92% Done

11 May 2020 15:41:54,313 INFO : 93% Done

11 May 2020 15:41:54,412 DEBUG: Total peptides inserted: 3

11 May 2020 15:41:54,412 INFO : Inserting ERG8

11 May 2020 15:41:54,415 INFO : 94% Done

11 May 2020 15:41:54,515 INFO : 95% Done

11 May 2020 15:41:54,615 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:54,615 INFO : Inserting SMAD4

11 May 2020 15:41:54,763 INFO : 96% Done

11 May 2020 15:41:54,847 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:54,847 INFO : Inserting STAT3

11 May 2020 15:41:54,849 INFO : 97% Done

11 May 2020 15:41:54,944 INFO : 98% Done

11 May 2020 15:41:55,064 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:55,064 INFO : Done parsing Skyline document.

11 May 2020 15:41:55,065 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:41:55,342 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:41:56,017 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:41:56,390 INFO : Cleaning up temp tables

11 May 2020 15:41:56,800 INFO : Completed import of Skyline document from CPDR-FFPE-ID-267_2020-01-28_10-30-41.sky.zip

11 May 2020 15:41:56,801 INFO : 100% Done

11 May 2020 15:41:56,810 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80133/CPDR-FFPE-ID-267_2020-01-28_10-30-41.sky.zip into the system

11 May 2020 15:41:56,810 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80114/CPDR-FFPE-ID-295_2020-01-28_10-21-29/CPDR-FFPE-ID-295.skyd into the system

11 May 2020 15:41:56,822 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80114/CPDR-FFPE-ID-295_2020-01-28_10-21-29/CPDR-FFPE-ID-295.skyd into the system

11 May 2020 15:41:56,822 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80114/CPDR-FFPE-ID-295_2020-01-28_10-21-29.sky.zip into the system

11 May 2020 15:41:56,826 INFO : Starting import from CPDR-FFPE-ID-295_2020-01-28_10-21-29.sky.zip

11 May 2020 15:41:56,832 INFO : Starting to import Skyline document from CPDR-FFPE-ID-295_2020-01-28_10-21-29.sky.zip

11 May 2020 15:41:56,853 INFO : Expanding CPDR-FFPE-ID-295.skyd

11 May 2020 15:41:57,384 INFO : Expanding CPDR-FFPE-ID-295.sky.view

11 May 2020 15:41:57,384 INFO : Expanding CPDR-FFPE-ID-295.sky

11 May 2020 15:41:57,749 INFO : Inserting TFF3

11 May 2020 15:41:57,753 INFO : 1% Done

11 May 2020 15:41:57,849 INFO : 2% Done

11 May 2020 15:41:57,941 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:57,942 INFO : Inserting AKT1

11 May 2020 15:41:57,943 INFO : 3% Done

11 May 2020 15:41:58,018 INFO : 4% Done

11 May 2020 15:41:58,108 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:58,109 INFO : Inserting AMACR

11 May 2020 15:41:58,111 INFO : 5% Done

11 May 2020 15:41:58,246 INFO : 6% Done

11 May 2020 15:41:58,387 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:58,388 INFO : Inserting ANDR

11 May 2020 15:41:58,391 INFO : 7% Done

11 May 2020 15:41:58,505 INFO : 8% Done

11 May 2020 15:41:58,595 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:58,595 INFO : Inserting ANXA2

11 May 2020 15:41:58,693 INFO : 9% Done

11 May 2020 15:41:58,793 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:58,794 INFO : Inserting AURKA

11 May 2020 15:41:58,796 INFO : 10% Done

11 May 2020 15:41:58,900 INFO : 11% Done

11 May 2020 15:41:58,999 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:58,999 INFO : Inserting BRAF

11 May 2020 15:41:59,002 INFO : 12% Done

11 May 2020 15:41:59,098 INFO : 13% Done

11 May 2020 15:41:59,199 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:59,199 INFO : Inserting CAMKK2

11 May 2020 15:41:59,201 INFO : 14% Done

11 May 2020 15:41:59,345 INFO : 15% Done

11 May 2020 15:41:59,494 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:59,494 INFO : Inserting CCND1

11 May 2020 15:41:59,497 INFO : 16% Done

11 May 2020 15:41:59,694 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:59,694 INFO : 17% Done

11 May 2020 15:41:59,694 INFO : Inserting CDN1A

11 May 2020 15:41:59,802 INFO : 18% Done

11 May 2020 15:41:59,945 DEBUG: Total peptides inserted: 2

11 May 2020 15:41:59,945 INFO : Inserting CRISP3

11 May 2020 15:41:59,947 INFO : 19% Done

11 May 2020 15:42:00,082 INFO : 20% Done

11 May 2020 15:42:00,202 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:00,202 INFO : Inserting DCOR

11 May 2020 15:42:00,204 INFO : 21% Done

11 May 2020 15:42:00,342 INFO : 22% Done

11 May 2020 15:42:00,485 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:00,486 INFO : Inserting EGFR

11 May 2020 15:42:00,489 INFO : 23% Done

11 May 2020 15:42:00,641 INFO : 24% Done

11 May 2020 15:42:00,736 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:00,736 INFO : Inserting EZH2

11 May 2020 15:42:00,739 INFO : 25% Done

11 May 2020 15:42:00,971 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:00,971 INFO : Inserting FGFR1

11 May 2020 15:42:01,092 INFO : 26% Done

11 May 2020 15:42:01,211 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:01,211 INFO : Inserting FOLH1

11 May 2020 15:42:01,213 INFO : 27% Done

11 May 2020 15:42:01,328 INFO : 28% Done

11 May 2020 15:42:01,438 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:01,439 INFO : Inserting HIF1A

11 May 2020 15:42:01,441 INFO : 29% Done

11 May 2020 15:42:01,581 INFO : 30% Done

11 May 2020 15:42:01,739 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:01,739 INFO : Inserting HPN

11 May 2020 15:42:01,741 INFO : 31% Done

11 May 2020 15:42:01,844 INFO : 32% Done

11 May 2020 15:42:01,939 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:01,939 INFO : Inserting HSPB1

11 May 2020 15:42:01,941 INFO : 33% Done

11 May 2020 15:42:02,037 INFO : 34% Done

11 May 2020 15:42:02,136 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:02,136 INFO : Inserting HXC6

11 May 2020 15:42:02,138 INFO : 35% Done

11 May 2020 15:42:02,231 INFO : 36% Done

11 May 2020 15:42:02,323 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:02,323 INFO : Inserting KLK11

11 May 2020 15:42:02,419 INFO : 37% Done

11 May 2020 15:42:02,513 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:02,513 INFO : Inserting KLK2

11 May 2020 15:42:02,515 INFO : 38% Done

11 May 2020 15:42:02,621 INFO : 39% Done

11 May 2020 15:42:02,725 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:02,725 INFO : Inserting MMP2

11 May 2020 15:42:02,727 INFO : 40% Done

11 May 2020 15:42:02,843 INFO : 41% Done

11 May 2020 15:42:02,921 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:02,921 INFO : Inserting MMP9

11 May 2020 15:42:02,923 INFO : 42% Done

11 May 2020 15:42:03,020 INFO : 43% Done

11 May 2020 15:42:03,113 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:03,113 INFO : Inserting MUC1

11 May 2020 15:42:03,115 INFO : 44% Done

11 May 2020 15:42:03,219 INFO : 45% Done

11 May 2020 15:42:03,314 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:03,314 INFO : Inserting MUC6

11 May 2020 15:42:03,411 INFO : 46% Done

11 May 2020 15:42:03,528 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:03,528 INFO : Inserting MYC

11 May 2020 15:42:03,530 INFO : 47% Done

11 May 2020 15:42:03,641 INFO : 48% Done

11 May 2020 15:42:03,737 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:03,737 INFO : Inserting MYCN

11 May 2020 15:42:03,739 INFO : 49% Done

11 May 2020 15:42:03,864 INFO : 50% Done

11 May 2020 15:42:03,984 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:03,984 INFO : Inserting MYO6

11 May 2020 15:42:03,986 INFO : 51% Done

11 May 2020 15:42:04,082 INFO : 52% Done

11 May 2020 15:42:04,179 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:04,179 INFO : Inserting NCOA2

11 May 2020 15:42:04,181 INFO : 53% Done

11 May 2020 15:42:04,277 INFO : 54% Done

11 May 2020 15:42:04,383 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:04,383 INFO : Inserting NPY

11 May 2020 15:42:04,385 INFO : 55% Done

11 May 2020 15:42:04,493 INFO : 56% Done

11 May 2020 15:42:04,604 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:04,604 INFO : Inserting O51E2

11 May 2020 15:42:04,683 INFO : 57% Done

11 May 2020 15:42:04,780 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:04,780 INFO : Inserting OSTP

11 May 2020 15:42:04,783 INFO : 58% Done

11 May 2020 15:42:04,880 INFO : 59% Done

11 May 2020 15:42:04,976 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:04,976 INFO : Inserting P53

11 May 2020 15:42:04,978 INFO : 60% Done

11 May 2020 15:42:05,077 INFO : 61% Done

11 May 2020 15:42:05,176 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:05,176 INFO : Inserting PAFA

11 May 2020 15:42:05,178 INFO : 62% Done

11 May 2020 15:42:05,273 INFO : 63% Done

11 May 2020 15:42:05,368 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:05,368 INFO : Inserting PGFRB

11 May 2020 15:42:05,447 INFO : 64% Done

11 May 2020 15:42:05,543 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:05,543 INFO : Inserting PK3CA

11 May 2020 15:42:05,545 INFO : 65% Done

11 May 2020 15:42:05,642 INFO : 66% Done

11 May 2020 15:42:05,753 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:05,753 INFO : Inserting RAF1

11 May 2020 15:42:05,755 INFO : 67% Done

11 May 2020 15:42:05,851 INFO : 68% Done

11 May 2020 15:42:05,926 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:05,927 INFO : Inserting SERPINI1

11 May 2020 15:42:05,929 INFO : 69% Done

11 May 2020 15:42:06,023 INFO : 70% Done

11 May 2020 15:42:06,133 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:06,134 INFO : Inserting SPINK1

11 May 2020 15:42:06,136 INFO : 71% Done

11 May 2020 15:42:06,248 INFO : 72% Done

11 May 2020 15:42:06,345 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:06,345 INFO : Inserting SPRC

11 May 2020 15:42:06,451 INFO : 73% Done

11 May 2020 15:42:06,558 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:06,558 INFO : Inserting TGFB1

11 May 2020 15:42:06,573 INFO : 74% Done

11 May 2020 15:42:06,785 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:06,785 INFO : Inserting TMPS2

11 May 2020 15:42:06,787 INFO : 75% Done

11 May 2020 15:42:06,885 INFO : 76% Done

11 May 2020 15:42:06,984 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:06,985 INFO : Inserting TPM2

11 May 2020 15:42:06,987 INFO : 77% Done

11 May 2020 15:42:07,102 INFO : 78% Done

11 May 2020 15:42:07,216 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:07,216 INFO : Inserting TWST1

11 May 2020 15:42:07,218 INFO : 79% Done

11 May 2020 15:42:07,319 INFO : 80% Done

11 May 2020 15:42:07,417 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:07,417 INFO : Inserting VEGFA

11 May 2020 15:42:07,419 INFO : 81% Done

11 May 2020 15:42:07,519 INFO : 82% Done

11 May 2020 15:42:07,624 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:07,624 INFO : Inserting PSA

11 May 2020 15:42:07,626 INFO : 83% Done

11 May 2020 15:42:07,811 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:07,811 INFO : Inserting ERG_pan

11 May 2020 15:42:07,813 INFO : 84% Done

11 May 2020 15:42:07,914 INFO : 85% Done

11 May 2020 15:42:08,011 INFO : 86% Done

11 May 2020 15:42:08,219 INFO : 87% Done

11 May 2020 15:42:08,450 INFO : 88% Done

11 May 2020 15:42:08,651 INFO : 89% Done

11 May 2020 15:42:08,834 INFO : 90% Done

11 May 2020 15:42:09,022 DEBUG: Total peptides inserted: 7

11 May 2020 15:42:09,023 INFO : Inserting ETV1

11 May 2020 15:42:09,026 INFO : 91% Done

11 May 2020 15:42:09,236 INFO : 92% Done

11 May 2020 15:42:09,469 INFO : 93% Done

11 May 2020 15:42:09,670 DEBUG: Total peptides inserted: 3

11 May 2020 15:42:09,670 INFO : Inserting ERG8

11 May 2020 15:42:09,674 INFO : 94% Done

11 May 2020 15:42:09,853 INFO : 95% Done

11 May 2020 15:42:10,035 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:10,035 INFO : Inserting SMAD4

11 May 2020 15:42:10,250 INFO : 96% Done

11 May 2020 15:42:10,411 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:10,411 INFO : Inserting STAT3

11 May 2020 15:42:10,415 INFO : 97% Done

11 May 2020 15:42:10,620 INFO : 98% Done

11 May 2020 15:42:10,820 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:10,821 INFO : Done parsing Skyline document.

11 May 2020 15:42:10,823 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:42:10,988 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:42:12,039 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:42:12,234 INFO : Cleaning up temp tables

11 May 2020 15:42:12,523 INFO : Completed import of Skyline document from CPDR-FFPE-ID-295_2020-01-28_10-21-29.sky.zip

11 May 2020 15:42:12,524 INFO : 100% Done

11 May 2020 15:42:12,530 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80114/CPDR-FFPE-ID-295_2020-01-28_10-21-29.sky.zip into the system

11 May 2020 15:42:12,530 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80107/CPDR-FFPE-ID-745_seg2_2020-01-28_10-17-05/CPDR-FFPE-ID-745_seg2.skyd into the system

11 May 2020 15:42:12,531 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80107/CPDR-FFPE-ID-745_seg2_2020-01-28_10-17-05/CPDR-FFPE-ID-745_seg2.skyd into the system

11 May 2020 15:42:12,531 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80107/CPDR-FFPE-ID-745_seg2_2020-01-28_10-17-05.sky.zip into the system

11 May 2020 15:42:12,533 INFO : Starting import from CPDR-FFPE-ID-745_seg2_2020-01-28_10-17-05.sky.zip

11 May 2020 15:42:12,536 INFO : Starting to import Skyline document from CPDR-FFPE-ID-745_seg2_2020-01-28_10-17-05.sky.zip

11 May 2020 15:42:12,545 INFO : Expanding CPDR-FFPE-ID-745_seg2.skyd

11 May 2020 15:42:12,788 INFO : Expanding CPDR-FFPE-ID-745_seg2.sky.view

11 May 2020 15:42:12,788 INFO : Expanding CPDR-FFPE-ID-745_seg2.sky

11 May 2020 15:42:12,811 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 15:42:12,814 INFO : 1% Done

11 May 2020 15:42:13,055 INFO : Inserting TFF3

11 May 2020 15:42:13,059 INFO : 2% Done

11 May 2020 15:42:13,149 DEBUG: Total peptides inserted: 1

11 May 2020 15:42:13,149 INFO : Inserting AKT1

11 May 2020 15:42:13,152 INFO : 3% Done

11 May 2020 15:42:13,248 INFO : 4% Done

11 May 2020 15:42:13,353 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:13,353 INFO : Inserting AMACR

11 May 2020 15:42:13,356 INFO : 5% Done

11 May 2020 15:42:13,471 INFO : 6% Done

11 May 2020 15:42:13,583 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:13,583 INFO : Inserting ANDR

11 May 2020 15:42:13,585 INFO : 7% Done

11 May 2020 15:42:13,699 INFO : 8% Done

11 May 2020 15:42:13,788 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:13,788 INFO : Inserting ANXA2

11 May 2020 15:42:13,791 INFO : 10% Done

11 May 2020 15:42:13,890 DEBUG: Total peptides inserted: 1

11 May 2020 15:42:13,890 INFO : Inserting AURKA

11 May 2020 15:42:13,893 INFO : 11% Done

11 May 2020 15:42:13,996 INFO : 12% Done

11 May 2020 15:42:14,094 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:14,094 INFO : Inserting BRAF

11 May 2020 15:42:14,096 INFO : 13% Done

11 May 2020 15:42:14,173 INFO : 14% Done

11 May 2020 15:42:14,338 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:14,338 INFO : Inserting CAMKK2

11 May 2020 15:42:14,341 INFO : 15% Done

11 May 2020 15:42:14,438 DEBUG: Total peptides inserted: 1

11 May 2020 15:42:14,438 INFO : Inserting CCND1

11 May 2020 15:42:14,440 INFO : 16% Done

11 May 2020 15:42:14,520 DEBUG: Total peptides inserted: 1

11 May 2020 15:42:14,520 INFO : Inserting CDN1A

11 May 2020 15:42:14,522 INFO : 17% Done

11 May 2020 15:42:14,706 INFO : 18% Done

11 May 2020 15:42:14,918 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:14,918 INFO : Inserting CRISP3

11 May 2020 15:42:14,923 INFO : 19% Done

11 May 2020 15:42:15,073 INFO : 20% Done

11 May 2020 15:42:15,156 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:15,156 INFO : Inserting DCOR

11 May 2020 15:42:15,158 INFO : 21% Done

11 May 2020 15:42:15,244 INFO : 22% Done

11 May 2020 15:42:15,350 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:15,351 INFO : Inserting EGFR

11 May 2020 15:42:15,354 INFO : 23% Done

11 May 2020 15:42:15,470 DEBUG: Total peptides inserted: 1

11 May 2020 15:42:15,470 INFO : Inserting EZH2

11 May 2020 15:42:15,473 INFO : 24% Done

11 May 2020 15:42:15,598 INFO : 25% Done

11 May 2020 15:42:15,683 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:15,683 INFO : Inserting FGFR1

11 May 2020 15:42:15,764 INFO : 26% Done

11 May 2020 15:42:15,848 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:15,848 INFO : Inserting FOLH1

11 May 2020 15:42:15,850 INFO : 27% Done

11 May 2020 15:42:15,931 DEBUG: Total peptides inserted: 1

11 May 2020 15:42:15,931 INFO : Inserting HIF1A

11 May 2020 15:42:15,933 INFO : 28% Done

11 May 2020 15:42:16,022 INFO : 29% Done

11 May 2020 15:42:16,105 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:16,105 INFO : Inserting HPN

11 May 2020 15:42:16,107 INFO : 31% Done

11 May 2020 15:42:16,216 INFO : 32% Done

11 May 2020 15:42:16,317 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:16,317 INFO : Inserting HSPB1

11 May 2020 15:42:16,320 INFO : 33% Done

11 May 2020 15:42:16,408 INFO : 34% Done

11 May 2020 15:42:16,501 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:16,501 INFO : Inserting HXC6

11 May 2020 15:42:16,503 INFO : 35% Done

11 May 2020 15:42:16,591 INFO : 36% Done

11 May 2020 15:42:16,668 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:16,668 INFO : Inserting KLK11

11 May 2020 15:42:16,670 INFO : 37% Done

11 May 2020 15:42:16,753 INFO : 38% Done

11 May 2020 15:42:16,831 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:16,831 INFO : Inserting KLK2

11 May 2020 15:42:16,833 INFO : 39% Done

11 May 2020 15:42:16,919 INFO : 40% Done

11 May 2020 15:42:16,999 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:17,000 INFO : Inserting MMP2

11 May 2020 15:42:17,002 INFO : 42% Done

11 May 2020 15:42:17,113 INFO : 43% Done

11 May 2020 15:42:17,215 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:17,215 INFO : Inserting MMP9

11 May 2020 15:42:17,218 INFO : 44% Done

11 May 2020 15:42:17,336 DEBUG: Total peptides inserted: 1

11 May 2020 15:42:17,337 INFO : Inserting MUC1

11 May 2020 15:42:17,339 INFO : 45% Done

11 May 2020 15:42:17,433 DEBUG: Total peptides inserted: 1

11 May 2020 15:42:17,433 INFO : Inserting MUC6

11 May 2020 15:42:17,435 INFO : 46% Done

11 May 2020 15:42:17,511 INFO : 47% Done

11 May 2020 15:42:17,592 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:17,592 INFO : Inserting MYC

11 May 2020 15:42:17,594 INFO : 48% Done

11 May 2020 15:42:17,674 INFO : 49% Done

11 May 2020 15:42:17,751 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:17,751 INFO : Inserting MYCN

11 May 2020 15:42:17,753 INFO : 50% Done

11 May 2020 15:42:17,830 INFO : 51% Done

11 May 2020 15:42:17,914 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:17,914 INFO : Inserting MYO6

11 May 2020 15:42:17,916 INFO : 52% Done

11 May 2020 15:42:18,009 INFO : 53% Done

11 May 2020 15:42:18,088 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:18,088 INFO : Inserting NCOA2

11 May 2020 15:42:18,091 INFO : 54% Done

11 May 2020 15:42:18,169 DEBUG: Total peptides inserted: 1

11 May 2020 15:42:18,169 INFO : Inserting NPY

11 May 2020 15:42:18,171 INFO : 55% Done

11 May 2020 15:42:18,247 INFO : 56% Done

11 May 2020 15:42:18,323 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:18,323 INFO : Inserting O51E2

11 May 2020 15:42:18,325 INFO : 57% Done

11 May 2020 15:42:18,400 INFO : 58% Done

11 May 2020 15:42:18,476 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:18,476 INFO : Inserting OSTP

11 May 2020 15:42:18,478 INFO : 59% Done

11 May 2020 15:42:18,555 INFO : 60% Done

11 May 2020 15:42:18,627 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:18,627 INFO : Inserting P53

11 May 2020 15:42:18,629 INFO : 61% Done

11 May 2020 15:42:18,704 INFO : 62% Done

11 May 2020 15:42:18,775 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:18,775 INFO : Inserting PAFA

11 May 2020 15:42:18,777 INFO : 63% Done

11 May 2020 15:42:18,846 INFO : 64% Done

11 May 2020 15:42:18,918 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:18,918 INFO : Inserting PGFRB

11 May 2020 15:42:18,920 INFO : 65% Done

11 May 2020 15:42:19,010 INFO : 66% Done

11 May 2020 15:42:19,114 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:19,114 INFO : Inserting PK3CA

11 May 2020 15:42:19,118 INFO : 67% Done

11 May 2020 15:42:19,222 INFO : 68% Done

11 May 2020 15:42:19,303 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:19,304 INFO : Inserting RAF1

11 May 2020 15:42:19,306 INFO : 69% Done

11 May 2020 15:42:19,415 INFO : 70% Done

11 May 2020 15:42:19,556 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:19,557 INFO : Inserting SERPINI1

11 May 2020 15:42:19,560 INFO : 72% Done

11 May 2020 15:42:19,655 INFO : 73% Done

11 May 2020 15:42:19,731 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:19,731 INFO : Inserting SPINK1

11 May 2020 15:42:19,734 INFO : 74% Done

11 May 2020 15:42:19,812 DEBUG: Total peptides inserted: 1

11 May 2020 15:42:19,812 INFO : Inserting SPRC

11 May 2020 15:42:19,891 DEBUG: Total peptides inserted: 1

11 May 2020 15:42:19,891 INFO : Inserting TGFB1

11 May 2020 15:42:19,893 INFO : 75% Done

11 May 2020 15:42:19,974 DEBUG: Total peptides inserted: 1

11 May 2020 15:42:19,975 INFO : Inserting TMPS2

11 May 2020 15:42:19,977 INFO : 76% Done

11 May 2020 15:42:20,070 INFO : 77% Done

11 May 2020 15:42:20,182 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:20,182 INFO : Inserting TPM2

11 May 2020 15:42:20,184 INFO : 78% Done

11 May 2020 15:42:20,285 INFO : 79% Done

11 May 2020 15:42:20,419 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:20,419 INFO : Inserting TWST1

11 May 2020 15:42:20,422 INFO : 80% Done

11 May 2020 15:42:20,518 INFO : 81% Done

11 May 2020 15:42:20,606 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:20,606 INFO : Inserting VEGFA

11 May 2020 15:42:20,609 INFO : 82% Done

11 May 2020 15:42:20,697 DEBUG: Total peptides inserted: 1

11 May 2020 15:42:20,698 INFO : Inserting PSA

11 May 2020 15:42:20,700 INFO : 83% Done

11 May 2020 15:42:20,796 DEBUG: Total peptides inserted: 1

11 May 2020 15:42:20,796 INFO : Inserting ERG_pan

11 May 2020 15:42:20,798 INFO : 84% Done

11 May 2020 15:42:20,900 INFO : 85% Done

11 May 2020 15:42:20,991 INFO : 86% Done

11 May 2020 15:42:21,082 INFO : 87% Done

11 May 2020 15:42:21,168 INFO : 88% Done

11 May 2020 15:42:21,289 INFO : 90% Done

11 May 2020 15:42:21,388 DEBUG: Total peptides inserted: 6

11 May 2020 15:42:21,388 INFO : Inserting ETV1

11 May 2020 15:42:21,390 INFO : 91% Done

11 May 2020 15:42:21,473 INFO : 92% Done

11 May 2020 15:42:21,557 INFO : 93% Done

11 May 2020 15:42:21,643 DEBUG: Total peptides inserted: 3

11 May 2020 15:42:21,644 INFO : Inserting ERG8

11 May 2020 15:42:21,646 INFO : 94% Done

11 May 2020 15:42:21,727 INFO : 95% Done

11 May 2020 15:42:21,810 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:21,810 INFO : Inserting SMAD4

11 May 2020 15:42:21,812 INFO : 96% Done

11 May 2020 15:42:21,891 DEBUG: Total peptides inserted: 1

11 May 2020 15:42:21,891 INFO : Inserting STAT3

11 May 2020 15:42:21,895 INFO : 97% Done

11 May 2020 15:42:21,997 INFO : 98% Done

11 May 2020 15:42:22,084 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:22,084 INFO : Done parsing Skyline document.

11 May 2020 15:42:22,086 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:42:22,144 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:42:22,533 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:42:22,937 INFO : Cleaning up temp tables

11 May 2020 15:42:23,199 INFO : Completed import of Skyline document from CPDR-FFPE-ID-745_seg2_2020-01-28_10-17-05.sky.zip

11 May 2020 15:42:23,201 INFO : 100% Done

11 May 2020 15:42:23,206 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80107/CPDR-FFPE-ID-745_seg2_2020-01-28_10-17-05.sky.zip into the system

11 May 2020 15:42:23,206 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80101/CPDR-FFPE-ID-361_seg2_2020-01-28_10-10-22/CPDR-FFPE-ID-361_seg2.skyd into the system

11 May 2020 15:42:23,207 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80101/CPDR-FFPE-ID-361_seg2_2020-01-28_10-10-22/CPDR-FFPE-ID-361_seg2.skyd into the system

11 May 2020 15:42:23,207 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80101/CPDR-FFPE-ID-361_seg2_2020-01-28_10-10-22.sky.zip into the system

11 May 2020 15:42:23,209 INFO : Starting import from CPDR-FFPE-ID-361_seg2_2020-01-28_10-10-22.sky.zip

11 May 2020 15:42:23,213 INFO : Starting to import Skyline document from CPDR-FFPE-ID-361_seg2_2020-01-28_10-10-22.sky.zip

11 May 2020 15:42:23,222 INFO : Expanding CPDR-FFPE-ID-361_seg2.skyd

11 May 2020 15:42:23,441 INFO : Expanding CPDR-FFPE-ID-361_seg2.sky.view

11 May 2020 15:42:23,441 INFO : Expanding CPDR-FFPE-ID-361_seg2.sky

11 May 2020 15:42:23,463 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 15:42:23,464 INFO : 1% Done

11 May 2020 15:42:23,755 INFO : Inserting TFF3

11 May 2020 15:42:23,760 INFO : 2% Done

11 May 2020 15:42:23,835 DEBUG: Total peptides inserted: 1

11 May 2020 15:42:23,835 INFO : Inserting AKT1

11 May 2020 15:42:23,837 INFO : 3% Done

11 May 2020 15:42:23,910 INFO : 4% Done

11 May 2020 15:42:23,983 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:23,984 INFO : Inserting AMACR

11 May 2020 15:42:23,986 INFO : 5% Done

11 May 2020 15:42:24,080 INFO : 6% Done

11 May 2020 15:42:24,165 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:24,165 INFO : Inserting ANDR

11 May 2020 15:42:24,167 INFO : 7% Done

11 May 2020 15:42:24,247 INFO : 8% Done

11 May 2020 15:42:24,337 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:24,337 INFO : Inserting ANXA2

11 May 2020 15:42:24,340 INFO : 10% Done

11 May 2020 15:42:24,426 DEBUG: Total peptides inserted: 1

11 May 2020 15:42:24,426 INFO : Inserting AURKA

11 May 2020 15:42:24,428 INFO : 11% Done

11 May 2020 15:42:24,500 INFO : 12% Done

11 May 2020 15:42:24,573 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:24,573 INFO : Inserting BRAF

11 May 2020 15:42:24,575 INFO : 13% Done

11 May 2020 15:42:24,659 INFO : 14% Done

11 May 2020 15:42:24,745 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:24,745 INFO : Inserting CAMKK2

11 May 2020 15:42:24,747 INFO : 15% Done

11 May 2020 15:42:24,841 DEBUG: Total peptides inserted: 1

11 May 2020 15:42:24,841 INFO : Inserting CCND1

11 May 2020 15:42:24,843 INFO : 16% Done

11 May 2020 15:42:24,927 DEBUG: Total peptides inserted: 1

11 May 2020 15:42:24,927 INFO : Inserting CDN1A

11 May 2020 15:42:24,929 INFO : 17% Done

11 May 2020 15:42:25,018 INFO : 18% Done

11 May 2020 15:42:25,108 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:25,109 INFO : Inserting CRISP3

11 May 2020 15:42:25,111 INFO : 19% Done

11 May 2020 15:42:25,201 INFO : 20% Done

11 May 2020 15:42:25,294 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:25,294 INFO : Inserting DCOR

11 May 2020 15:42:25,296 INFO : 21% Done

11 May 2020 15:42:25,373 INFO : 22% Done

11 May 2020 15:42:25,448 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:25,448 INFO : Inserting EGFR

11 May 2020 15:42:25,451 INFO : 23% Done

11 May 2020 15:42:25,523 DEBUG: Total peptides inserted: 1

11 May 2020 15:42:25,523 INFO : Inserting EZH2

11 May 2020 15:42:25,526 INFO : 24% Done

11 May 2020 15:42:25,634 INFO : 25% Done

11 May 2020 15:42:25,704 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:25,704 INFO : Inserting FGFR1

11 May 2020 15:42:25,790 INFO : 26% Done

11 May 2020 15:42:25,878 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:25,879 INFO : Inserting FOLH1

11 May 2020 15:42:25,881 INFO : 27% Done

11 May 2020 15:42:25,987 DEBUG: Total peptides inserted: 1

11 May 2020 15:42:25,987 INFO : Inserting HIF1A

11 May 2020 15:42:25,989 INFO : 28% Done

11 May 2020 15:42:26,094 INFO : 29% Done

11 May 2020 15:42:26,207 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:26,207 INFO : Inserting HPN

11 May 2020 15:42:26,209 INFO : 30% Done

11 May 2020 15:42:26,290 INFO : 32% Done

11 May 2020 15:42:26,368 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:26,368 INFO : Inserting HSPB1

11 May 2020 15:42:26,370 INFO : 33% Done

11 May 2020 15:42:26,472 INFO : 34% Done

11 May 2020 15:42:26,563 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:26,563 INFO : Inserting HXC6

11 May 2020 15:42:26,565 INFO : 35% Done

11 May 2020 15:42:26,656 INFO : 36% Done

11 May 2020 15:42:26,744 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:26,744 INFO : Inserting KLK11

11 May 2020 15:42:26,746 INFO : 37% Done

11 May 2020 15:42:26,839 INFO : 38% Done

11 May 2020 15:42:26,921 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:26,921 INFO : Inserting KLK2

11 May 2020 15:42:26,923 INFO : 40% Done

11 May 2020 15:42:27,004 INFO : 41% Done

11 May 2020 15:42:27,101 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:27,101 INFO : Inserting MMP2

11 May 2020 15:42:27,103 INFO : 42% Done

11 May 2020 15:42:27,189 INFO : 43% Done

11 May 2020 15:42:27,281 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:27,281 INFO : Inserting MMP9

11 May 2020 15:42:27,283 INFO : 44% Done

11 May 2020 15:42:27,363 DEBUG: Total peptides inserted: 1

11 May 2020 15:42:27,363 INFO : Inserting MUC1

11 May 2020 15:42:27,365 INFO : 45% Done

11 May 2020 15:42:27,437 DEBUG: Total peptides inserted: 1

11 May 2020 15:42:27,437 INFO : Inserting MUC6

11 May 2020 15:42:27,439 INFO : 46% Done

11 May 2020 15:42:27,505 INFO : 47% Done

11 May 2020 15:42:27,574 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:27,574 INFO : Inserting MYC

11 May 2020 15:42:27,576 INFO : 48% Done

11 May 2020 15:42:27,646 INFO : 49% Done

11 May 2020 15:42:27,720 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:27,720 INFO : Inserting MYCN

11 May 2020 15:42:27,722 INFO : 50% Done

11 May 2020 15:42:27,801 INFO : 51% Done

11 May 2020 15:42:27,881 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:27,881 INFO : Inserting MYO6

11 May 2020 15:42:27,883 INFO : 52% Done

11 May 2020 15:42:28,013 INFO : 53% Done

11 May 2020 15:42:28,080 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:28,080 INFO : Inserting NCOA2

11 May 2020 15:42:28,082 INFO : 54% Done

11 May 2020 15:42:28,165 DEBUG: Total peptides inserted: 1

11 May 2020 15:42:28,165 INFO : Inserting NPY

11 May 2020 15:42:28,167 INFO : 55% Done

11 May 2020 15:42:28,236 INFO : 56% Done

11 May 2020 15:42:28,313 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:28,313 INFO : Inserting O51E2

11 May 2020 15:42:28,315 INFO : 57% Done

11 May 2020 15:42:28,391 INFO : 58% Done

11 May 2020 15:42:28,462 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:28,462 INFO : Inserting OSTP

11 May 2020 15:42:28,464 INFO : 59% Done

11 May 2020 15:42:28,541 INFO : 60% Done

11 May 2020 15:42:28,705 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:28,705 INFO : Inserting P53

11 May 2020 15:42:28,707 INFO : 61% Done

11 May 2020 15:42:28,868 INFO : 62% Done

11 May 2020 15:42:29,008 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:29,009 INFO : Inserting PAFA

11 May 2020 15:42:29,011 INFO : 63% Done

11 May 2020 15:42:29,097 INFO : 64% Done

11 May 2020 15:42:29,176 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:29,176 INFO : Inserting PGFRB

11 May 2020 15:42:29,180 INFO : 65% Done

11 May 2020 15:42:29,261 INFO : 66% Done

11 May 2020 15:42:29,337 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:29,337 INFO : Inserting PK3CA

11 May 2020 15:42:29,339 INFO : 67% Done

11 May 2020 15:42:29,412 INFO : 68% Done

11 May 2020 15:42:29,478 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:29,478 INFO : Inserting RAF1

11 May 2020 15:42:29,480 INFO : 69% Done

11 May 2020 15:42:29,586 INFO : 71% Done

11 May 2020 15:42:29,673 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:29,673 INFO : Inserting SERPINI1

11 May 2020 15:42:29,675 INFO : 72% Done

11 May 2020 15:42:29,748 INFO : 73% Done

11 May 2020 15:42:29,830 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:29,830 INFO : Inserting SPINK1

11 May 2020 15:42:29,832 INFO : 74% Done

11 May 2020 15:42:29,911 DEBUG: Total peptides inserted: 1

11 May 2020 15:42:29,911 INFO : Inserting SPRC

11 May 2020 15:42:30,012 DEBUG: Total peptides inserted: 1

11 May 2020 15:42:30,012 INFO : Inserting TGFB1

11 May 2020 15:42:30,015 INFO : 75% Done

11 May 2020 15:42:30,097 DEBUG: Total peptides inserted: 1

11 May 2020 15:42:30,097 INFO : Inserting TMPS2

11 May 2020 15:42:30,099 INFO : 76% Done

11 May 2020 15:42:30,205 INFO : 77% Done

11 May 2020 15:42:30,289 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:30,289 INFO : Inserting TPM2

11 May 2020 15:42:30,291 INFO : 78% Done

11 May 2020 15:42:30,377 INFO : 79% Done

11 May 2020 15:42:30,480 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:30,480 INFO : Inserting TWST1

11 May 2020 15:42:30,482 INFO : 80% Done

11 May 2020 15:42:30,561 INFO : 81% Done

11 May 2020 15:42:30,768 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:30,768 INFO : Inserting VEGFA

11 May 2020 15:42:30,770 INFO : 82% Done

11 May 2020 15:42:30,840 DEBUG: Total peptides inserted: 1

11 May 2020 15:42:30,840 INFO : Inserting PSA

11 May 2020 15:42:30,842 INFO : 84% Done

11 May 2020 15:42:30,928 DEBUG: Total peptides inserted: 1

11 May 2020 15:42:30,928 INFO : Inserting ERG_pan

11 May 2020 15:42:30,930 INFO : 85% Done

11 May 2020 15:42:30,992 INFO : 86% Done

11 May 2020 15:42:31,127 INFO : 87% Done

11 May 2020 15:42:31,441 INFO : 88% Done

11 May 2020 15:42:31,515 INFO : 90% Done

11 May 2020 15:42:31,589 DEBUG: Total peptides inserted: 6

11 May 2020 15:42:31,589 INFO : Inserting ETV1

11 May 2020 15:42:31,591 INFO : 91% Done

11 May 2020 15:42:31,674 INFO : 92% Done

11 May 2020 15:42:31,784 INFO : 93% Done

11 May 2020 15:42:31,862 DEBUG: Total peptides inserted: 3

11 May 2020 15:42:31,862 INFO : Inserting ERG8

11 May 2020 15:42:31,864 INFO : 94% Done

11 May 2020 15:42:31,938 INFO : 95% Done

11 May 2020 15:42:32,023 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:32,023 INFO : Inserting SMAD4

11 May 2020 15:42:32,026 INFO : 96% Done

11 May 2020 15:42:32,117 DEBUG: Total peptides inserted: 1

11 May 2020 15:42:32,118 INFO : Inserting STAT3

11 May 2020 15:42:32,120 INFO : 97% Done

11 May 2020 15:42:32,197 INFO : 98% Done

11 May 2020 15:42:32,270 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:32,271 INFO : Done parsing Skyline document.

11 May 2020 15:42:32,272 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:42:32,325 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:42:32,845 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:42:33,072 INFO : Cleaning up temp tables

11 May 2020 15:42:33,345 INFO : Completed import of Skyline document from CPDR-FFPE-ID-361_seg2_2020-01-28_10-10-22.sky.zip

11 May 2020 15:42:33,346 INFO : 100% Done

11 May 2020 15:42:33,353 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80101/CPDR-FFPE-ID-361_seg2_2020-01-28_10-10-22.sky.zip into the system

11 May 2020 15:42:33,353 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80145/CPDR-FFPE-ID-320_2020-01-28_10-38-20/CPDR-FFPE-ID-320.skyd into the system

11 May 2020 15:42:33,354 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80145/CPDR-FFPE-ID-320_2020-01-28_10-38-20/CPDR-FFPE-ID-320.skyd into the system

11 May 2020 15:42:33,354 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80145/CPDR-FFPE-ID-320_2020-01-28_10-38-20.sky.zip into the system

11 May 2020 15:42:33,355 INFO : Starting import from CPDR-FFPE-ID-320_2020-01-28_10-38-20.sky.zip

11 May 2020 15:42:33,359 INFO : Starting to import Skyline document from CPDR-FFPE-ID-320_2020-01-28_10-38-20.sky.zip

11 May 2020 15:42:33,367 INFO : Expanding CPDR-FFPE-ID-320.skyd

11 May 2020 15:42:33,630 INFO : Expanding CPDR-FFPE-ID-320.sky.view

11 May 2020 15:42:33,631 INFO : Expanding CPDR-FFPE-ID-320.sky

11 May 2020 15:42:34,183 INFO : Inserting TFF3

11 May 2020 15:42:34,188 INFO : 1% Done

11 May 2020 15:42:34,300 INFO : 2% Done

11 May 2020 15:42:34,392 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:34,392 INFO : Inserting AKT1

11 May 2020 15:42:34,394 INFO : 3% Done

11 May 2020 15:42:34,471 INFO : 4% Done

11 May 2020 15:42:34,594 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:34,594 INFO : Inserting AMACR

11 May 2020 15:42:34,598 INFO : 5% Done

11 May 2020 15:42:34,733 INFO : 6% Done

11 May 2020 15:42:34,862 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:34,862 INFO : Inserting ANDR

11 May 2020 15:42:34,866 INFO : 7% Done

11 May 2020 15:42:35,168 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:35,168 INFO : Inserting ANXA2

11 May 2020 15:42:35,172 INFO : 8% Done

11 May 2020 15:42:35,302 INFO : 9% Done

11 May 2020 15:42:35,427 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:35,428 INFO : Inserting AURKA

11 May 2020 15:42:35,432 INFO : 10% Done

11 May 2020 15:42:35,560 INFO : 11% Done

11 May 2020 15:42:35,684 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:35,684 INFO : Inserting BRAF

11 May 2020 15:42:35,688 INFO : 12% Done

11 May 2020 15:42:35,819 INFO : 13% Done

11 May 2020 15:42:35,970 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:35,971 INFO : Inserting CAMKK2

11 May 2020 15:42:35,975 INFO : 14% Done

11 May 2020 15:42:36,143 INFO : 15% Done

11 May 2020 15:42:36,269 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:36,269 INFO : Inserting CCND1

11 May 2020 15:42:36,273 INFO : 16% Done

11 May 2020 15:42:36,527 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:36,527 INFO : Inserting CDN1A

11 May 2020 15:42:36,531 INFO : 17% Done

11 May 2020 15:42:36,664 INFO : 18% Done

11 May 2020 15:42:36,790 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:36,790 INFO : Inserting CRISP3

11 May 2020 15:42:36,794 INFO : 19% Done

11 May 2020 15:42:36,924 INFO : 20% Done

11 May 2020 15:42:37,044 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:37,044 INFO : Inserting DCOR

11 May 2020 15:42:37,046 INFO : 21% Done

11 May 2020 15:42:37,143 INFO : 22% Done

11 May 2020 15:42:37,254 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:37,254 INFO : Inserting EGFR

11 May 2020 15:42:37,256 INFO : 23% Done

11 May 2020 15:42:37,346 INFO : 24% Done

11 May 2020 15:42:37,418 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:37,419 INFO : Inserting EZH2

11 May 2020 15:42:37,420 INFO : 25% Done

11 May 2020 15:42:37,745 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:37,745 INFO : Inserting FGFR1

11 May 2020 15:42:37,969 INFO : 26% Done

11 May 2020 15:42:38,192 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:38,192 INFO : Inserting FOLH1

11 May 2020 15:42:38,196 INFO : 27% Done

11 May 2020 15:42:38,443 INFO : 28% Done

11 May 2020 15:42:38,694 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:38,694 INFO : Inserting HIF1A

11 May 2020 15:42:38,698 INFO : 29% Done

11 May 2020 15:42:38,948 INFO : 30% Done

11 May 2020 15:42:39,094 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:39,094 INFO : Inserting HPN

11 May 2020 15:42:39,096 INFO : 31% Done

11 May 2020 15:42:39,207 INFO : 32% Done

11 May 2020 15:42:39,297 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:39,297 INFO : Inserting HSPB1

11 May 2020 15:42:39,299 INFO : 33% Done

11 May 2020 15:42:39,408 INFO : 34% Done

11 May 2020 15:42:39,546 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:39,546 INFO : Inserting HXC6

11 May 2020 15:42:39,551 INFO : 35% Done

11 May 2020 15:42:39,778 INFO : 36% Done

11 May 2020 15:42:40,004 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:40,004 INFO : Inserting KLK11

11 May 2020 15:42:40,265 INFO : 37% Done

11 May 2020 15:42:40,486 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:40,486 INFO : Inserting KLK2

11 May 2020 15:42:40,491 INFO : 38% Done

11 May 2020 15:42:40,734 INFO : 39% Done

11 May 2020 15:42:40,972 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:40,972 INFO : Inserting MMP2

11 May 2020 15:42:40,977 INFO : 40% Done

11 May 2020 15:42:41,199 INFO : 41% Done

11 May 2020 15:42:41,376 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:41,376 INFO : Inserting MMP9

11 May 2020 15:42:41,380 INFO : 42% Done

11 May 2020 15:42:41,645 INFO : 43% Done

11 May 2020 15:42:41,893 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:41,893 INFO : Inserting MUC1

11 May 2020 15:42:41,897 INFO : 44% Done

11 May 2020 15:42:42,145 INFO : 45% Done

11 May 2020 15:42:42,390 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:42,391 INFO : Inserting MUC6

11 May 2020 15:42:42,695 INFO : 46% Done

11 May 2020 15:42:42,931 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:42,931 INFO : Inserting MYC

11 May 2020 15:42:42,936 INFO : 47% Done

11 May 2020 15:42:43,183 INFO : 48% Done

11 May 2020 15:42:43,537 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:43,537 INFO : Inserting MYCN

11 May 2020 15:42:43,542 INFO : 49% Done

11 May 2020 15:42:43,764 INFO : 50% Done

11 May 2020 15:42:43,980 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:43,980 INFO : Inserting MYO6

11 May 2020 15:42:43,984 INFO : 51% Done

11 May 2020 15:42:44,202 INFO : 52% Done

11 May 2020 15:42:44,417 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:44,417 INFO : Inserting NCOA2

11 May 2020 15:42:44,421 INFO : 53% Done

11 May 2020 15:42:44,646 INFO : 54% Done

11 May 2020 15:42:44,862 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:44,862 INFO : Inserting NPY

11 May 2020 15:42:44,867 INFO : 55% Done

11 May 2020 15:42:45,089 INFO : 56% Done

11 May 2020 15:42:45,354 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:45,355 INFO : Inserting O51E2

11 May 2020 15:42:45,559 INFO : 57% Done

11 May 2020 15:42:45,791 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:45,791 INFO : Inserting OSTP

11 May 2020 15:42:45,796 INFO : 58% Done

11 May 2020 15:42:46,038 INFO : 59% Done

11 May 2020 15:42:46,318 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:46,318 INFO : Inserting P53

11 May 2020 15:42:46,323 INFO : 60% Done

11 May 2020 15:42:46,594 INFO : 61% Done

11 May 2020 15:42:46,843 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:46,843 INFO : Inserting PAFA

11 May 2020 15:42:46,848 INFO : 62% Done

11 May 2020 15:42:47,102 INFO : 63% Done

11 May 2020 15:42:47,351 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:47,351 INFO : Inserting PGFRB

11 May 2020 15:42:47,560 INFO : 64% Done

11 May 2020 15:42:47,809 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:47,809 INFO : Inserting PK3CA

11 May 2020 15:42:47,813 INFO : 65% Done

11 May 2020 15:42:48,067 INFO : 66% Done

11 May 2020 15:42:48,316 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:48,316 INFO : Inserting RAF1

11 May 2020 15:42:48,321 INFO : 67% Done

11 May 2020 15:42:48,573 INFO : 68% Done

11 May 2020 15:42:48,770 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:48,770 INFO : Inserting SERPINI1

11 May 2020 15:42:48,775 INFO : 69% Done

11 May 2020 15:42:49,028 INFO : 70% Done

11 May 2020 15:42:49,288 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:49,288 INFO : Inserting SPINK1

11 May 2020 15:42:49,293 INFO : 71% Done

11 May 2020 15:42:49,547 INFO : 72% Done

11 May 2020 15:42:49,841 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:49,841 INFO : Inserting SPRC

11 May 2020 15:42:50,099 INFO : 73% Done

11 May 2020 15:42:50,346 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:50,347 INFO : Inserting TGFB1

11 May 2020 15:42:50,351 INFO : 74% Done

11 May 2020 15:42:50,873 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:50,873 INFO : Inserting TMPS2

11 May 2020 15:42:50,878 INFO : 75% Done

11 May 2020 15:42:51,130 INFO : 76% Done

11 May 2020 15:42:51,382 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:51,382 INFO : Inserting TPM2

11 May 2020 15:42:51,387 INFO : 77% Done

11 May 2020 15:42:51,689 INFO : 78% Done

11 May 2020 15:42:51,938 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:51,938 INFO : Inserting TWST1

11 May 2020 15:42:51,942 INFO : 79% Done

11 May 2020 15:42:52,197 INFO : 80% Done

11 May 2020 15:42:52,447 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:52,447 INFO : Inserting VEGFA

11 May 2020 15:42:52,452 INFO : 81% Done

11 May 2020 15:42:52,684 INFO : 82% Done

11 May 2020 15:42:52,897 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:52,897 INFO : Inserting PSA

11 May 2020 15:42:52,901 INFO : 83% Done

11 May 2020 15:42:53,374 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:53,374 INFO : Inserting ERG_pan

11 May 2020 15:42:53,379 INFO : 84% Done

11 May 2020 15:42:53,619 INFO : 85% Done

11 May 2020 15:42:53,872 INFO : 86% Done

11 May 2020 15:42:54,126 INFO : 87% Done

11 May 2020 15:42:54,393 INFO : 88% Done

11 May 2020 15:42:54,703 INFO : 89% Done

11 May 2020 15:42:54,946 INFO : 90% Done

11 May 2020 15:42:55,216 DEBUG: Total peptides inserted: 7

11 May 2020 15:42:55,216 INFO : Inserting ETV1

11 May 2020 15:42:55,220 INFO : 91% Done

11 May 2020 15:42:55,444 INFO : 92% Done

11 May 2020 15:42:55,668 INFO : 93% Done

11 May 2020 15:42:55,890 DEBUG: Total peptides inserted: 3

11 May 2020 15:42:55,890 INFO : Inserting ERG8

11 May 2020 15:42:55,895 INFO : 94% Done

11 May 2020 15:42:56,122 INFO : 95% Done

11 May 2020 15:42:56,343 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:56,343 INFO : Inserting SMAD4

11 May 2020 15:42:56,602 INFO : 96% Done

11 May 2020 15:42:56,794 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:56,794 INFO : Inserting STAT3

11 May 2020 15:42:56,799 INFO : 97% Done

11 May 2020 15:42:57,065 INFO : 98% Done

11 May 2020 15:42:57,365 DEBUG: Total peptides inserted: 2

11 May 2020 15:42:57,366 INFO : Done parsing Skyline document.

11 May 2020 15:42:57,368 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:42:57,528 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:42:58,584 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:43:00,698 INFO : Cleaning up temp tables

11 May 2020 15:43:00,981 INFO : Completed import of Skyline document from CPDR-FFPE-ID-320_2020-01-28_10-38-20.sky.zip

11 May 2020 15:43:00,982 INFO : 100% Done

11 May 2020 15:43:00,990 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80145/CPDR-FFPE-ID-320_2020-01-28_10-38-20.sky.zip into the system

11 May 2020 15:43:00,990 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80141/CPDR-FFPE-ID-398_2020-01-28_10-35-37/CPDR-FFPE-ID-398.skyd into the system

11 May 2020 15:43:00,992 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80141/CPDR-FFPE-ID-398_2020-01-28_10-35-37/CPDR-FFPE-ID-398.skyd into the system

11 May 2020 15:43:00,992 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80141/CPDR-FFPE-ID-398_2020-01-28_10-35-37.sky.zip into the system

11 May 2020 15:43:00,995 INFO : Starting import from CPDR-FFPE-ID-398_2020-01-28_10-35-37.sky.zip

11 May 2020 15:43:00,999 INFO : Starting to import Skyline document from CPDR-FFPE-ID-398_2020-01-28_10-35-37.sky.zip

11 May 2020 15:43:01,016 INFO : Expanding CPDR-FFPE-ID-398.skyd

11 May 2020 15:43:01,447 INFO : Expanding CPDR-FFPE-ID-398.sky.view

11 May 2020 15:43:01,447 INFO : Expanding CPDR-FFPE-ID-398.sky

11 May 2020 15:43:01,757 INFO : Inserting TFF3

11 May 2020 15:43:01,762 INFO : 1% Done

11 May 2020 15:43:01,866 INFO : 2% Done

11 May 2020 15:43:02,026 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:02,026 INFO : Inserting AKT1

11 May 2020 15:43:02,030 INFO : 3% Done

11 May 2020 15:43:02,127 INFO : 4% Done

11 May 2020 15:43:02,252 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:02,252 INFO : Inserting AMACR

11 May 2020 15:43:02,256 INFO : 5% Done

11 May 2020 15:43:02,372 INFO : 6% Done

11 May 2020 15:43:02,486 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:02,486 INFO : Inserting ANDR

11 May 2020 15:43:02,490 INFO : 7% Done

11 May 2020 15:43:02,607 INFO : 8% Done

11 May 2020 15:43:02,729 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:02,729 INFO : Inserting ANXA2

11 May 2020 15:43:02,859 INFO : 9% Done

11 May 2020 15:43:02,974 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:02,974 INFO : Inserting AURKA

11 May 2020 15:43:02,978 INFO : 10% Done

11 May 2020 15:43:03,095 INFO : 11% Done

11 May 2020 15:43:03,208 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:03,208 INFO : Inserting BRAF

11 May 2020 15:43:03,212 INFO : 12% Done

11 May 2020 15:43:03,457 INFO : 13% Done

11 May 2020 15:43:03,570 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:03,570 INFO : Inserting CAMKK2

11 May 2020 15:43:03,574 INFO : 14% Done

11 May 2020 15:43:03,717 INFO : 15% Done

11 May 2020 15:43:03,830 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:03,830 INFO : Inserting CCND1

11 May 2020 15:43:03,834 INFO : 16% Done

11 May 2020 15:43:03,952 INFO : 17% Done

11 May 2020 15:43:04,048 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:04,048 INFO : Inserting CDN1A

11 May 2020 15:43:04,201 INFO : 18% Done

11 May 2020 15:43:04,318 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:04,318 INFO : Inserting CRISP3

11 May 2020 15:43:04,322 INFO : 19% Done

11 May 2020 15:43:04,689 INFO : 20% Done

11 May 2020 15:43:04,891 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:04,892 INFO : Inserting DCOR

11 May 2020 15:43:04,896 INFO : 21% Done

11 May 2020 15:43:05,100 INFO : 22% Done

11 May 2020 15:43:05,301 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:05,301 INFO : Inserting EGFR

11 May 2020 15:43:05,306 INFO : 23% Done

11 May 2020 15:43:05,509 INFO : 24% Done

11 May 2020 15:43:05,674 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:05,674 INFO : Inserting EZH2

11 May 2020 15:43:05,678 INFO : 25% Done

11 May 2020 15:43:06,106 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:06,107 INFO : Inserting FGFR1

11 May 2020 15:43:06,352 INFO : 26% Done

11 May 2020 15:43:06,569 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:06,570 INFO : Inserting FOLH1

11 May 2020 15:43:06,574 INFO : 27% Done

11 May 2020 15:43:06,781 INFO : 28% Done

11 May 2020 15:43:06,981 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:06,982 INFO : Inserting HIF1A

11 May 2020 15:43:06,986 INFO : 29% Done

11 May 2020 15:43:07,192 INFO : 30% Done

11 May 2020 15:43:07,392 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:07,392 INFO : Inserting HPN

11 May 2020 15:43:07,396 INFO : 31% Done

11 May 2020 15:43:07,602 INFO : 32% Done

11 May 2020 15:43:07,804 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:07,804 INFO : Inserting HSPB1

11 May 2020 15:43:07,808 INFO : 33% Done

11 May 2020 15:43:08,020 INFO : 34% Done

11 May 2020 15:43:08,220 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:08,220 INFO : Inserting HXC6

11 May 2020 15:43:08,224 INFO : 35% Done

11 May 2020 15:43:08,430 INFO : 36% Done

11 May 2020 15:43:08,635 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:08,635 INFO : Inserting KLK11

11 May 2020 15:43:08,640 INFO : 37% Done

11 May 2020 15:43:09,058 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:09,058 INFO : Inserting KLK2

11 May 2020 15:43:09,062 INFO : 38% Done

11 May 2020 15:43:09,269 INFO : 39% Done

11 May 2020 15:43:09,477 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:09,478 INFO : Inserting MMP2

11 May 2020 15:43:09,482 INFO : 40% Done

11 May 2020 15:43:09,699 INFO : 41% Done

11 May 2020 15:43:09,861 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:09,862 INFO : Inserting MMP9

11 May 2020 15:43:09,866 INFO : 42% Done

11 May 2020 15:43:10,072 INFO : 43% Done

11 May 2020 15:43:10,308 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:10,308 INFO : Inserting MUC1

11 May 2020 15:43:10,312 INFO : 44% Done

11 May 2020 15:43:10,518 INFO : 45% Done

11 May 2020 15:43:10,720 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:10,720 INFO : Inserting MUC6

11 May 2020 15:43:10,942 INFO : 46% Done

11 May 2020 15:43:11,170 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:11,170 INFO : Inserting MYC

11 May 2020 15:43:11,175 INFO : 47% Done

11 May 2020 15:43:11,404 INFO : 48% Done

11 May 2020 15:43:11,630 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:11,630 INFO : Inserting MYCN

11 May 2020 15:43:11,634 INFO : 49% Done

11 May 2020 15:43:11,861 INFO : 50% Done

11 May 2020 15:43:12,088 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:12,088 INFO : Inserting MYO6

11 May 2020 15:43:12,092 INFO : 51% Done

11 May 2020 15:43:12,310 INFO : 52% Done

11 May 2020 15:43:12,521 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:12,521 INFO : Inserting NCOA2

11 May 2020 15:43:12,526 INFO : 53% Done

11 May 2020 15:43:12,754 INFO : 54% Done

11 May 2020 15:43:12,979 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:12,980 INFO : Inserting NPY

11 May 2020 15:43:12,984 INFO : 55% Done

11 May 2020 15:43:13,214 INFO : 56% Done

11 May 2020 15:43:13,418 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:13,418 INFO : Inserting O51E2

11 May 2020 15:43:13,583 INFO : 57% Done

11 May 2020 15:43:13,783 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:13,783 INFO : Inserting OSTP

11 May 2020 15:43:13,788 INFO : 58% Done

11 May 2020 15:43:13,990 INFO : 59% Done

11 May 2020 15:43:14,211 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:14,211 INFO : Inserting P53

11 May 2020 15:43:14,216 INFO : 60% Done

11 May 2020 15:43:14,444 INFO : 61% Done

11 May 2020 15:43:14,670 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:14,670 INFO : Inserting PAFA

11 May 2020 15:43:14,674 INFO : 62% Done

11 May 2020 15:43:14,902 INFO : 63% Done

11 May 2020 15:43:15,129 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:15,129 INFO : Inserting PGFRB

11 May 2020 15:43:15,321 INFO : 64% Done

11 May 2020 15:43:15,546 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:15,546 INFO : Inserting PK3CA

11 May 2020 15:43:15,550 INFO : 65% Done

11 May 2020 15:43:15,781 INFO : 66% Done

11 May 2020 15:43:16,007 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:16,007 INFO : Inserting RAF1

11 May 2020 15:43:16,011 INFO : 67% Done

11 May 2020 15:43:16,238 INFO : 68% Done

11 May 2020 15:43:16,417 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:16,417 INFO : Inserting SERPINI1

11 May 2020 15:43:16,421 INFO : 69% Done

11 May 2020 15:43:16,648 INFO : 70% Done

11 May 2020 15:43:16,873 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:16,873 INFO : Inserting SPINK1

11 May 2020 15:43:16,877 INFO : 71% Done

11 May 2020 15:43:17,117 INFO : 72% Done

11 May 2020 15:43:17,344 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:17,344 INFO : Inserting SPRC

11 May 2020 15:43:17,578 INFO : 73% Done

11 May 2020 15:43:17,802 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:17,802 INFO : Inserting TGFB1

11 May 2020 15:43:17,806 INFO : 74% Done

11 May 2020 15:43:18,266 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:18,266 INFO : Inserting TMPS2

11 May 2020 15:43:18,270 INFO : 75% Done

11 May 2020 15:43:18,497 INFO : 76% Done

11 May 2020 15:43:18,723 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:18,723 INFO : Inserting TPM2

11 May 2020 15:43:18,728 INFO : 77% Done

11 May 2020 15:43:18,963 INFO : 78% Done

11 May 2020 15:43:19,231 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:19,231 INFO : Inserting TWST1

11 May 2020 15:43:19,235 INFO : 79% Done

11 May 2020 15:43:19,463 INFO : 80% Done

11 May 2020 15:43:19,686 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:19,687 INFO : Inserting VEGFA

11 May 2020 15:43:19,691 INFO : 81% Done

11 May 2020 15:43:19,917 INFO : 82% Done

11 May 2020 15:43:20,142 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:20,142 INFO : Inserting PSA

11 May 2020 15:43:20,146 INFO : 83% Done

11 May 2020 15:43:20,598 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:20,598 INFO : Inserting ERG_pan

11 May 2020 15:43:20,603 INFO : 84% Done

11 May 2020 15:43:20,831 INFO : 85% Done

11 May 2020 15:43:21,060 INFO : 86% Done

11 May 2020 15:43:21,296 INFO : 87% Done

11 May 2020 15:43:21,504 INFO : 88% Done

11 May 2020 15:43:21,736 INFO : 89% Done

11 May 2020 15:43:21,962 INFO : 90% Done

11 May 2020 15:43:22,187 DEBUG: Total peptides inserted: 7

11 May 2020 15:43:22,187 INFO : Inserting ETV1

11 May 2020 15:43:22,191 INFO : 91% Done

11 May 2020 15:43:22,420 INFO : 92% Done

11 May 2020 15:43:22,649 INFO : 93% Done

11 May 2020 15:43:22,875 DEBUG: Total peptides inserted: 3

11 May 2020 15:43:22,875 INFO : Inserting ERG8

11 May 2020 15:43:22,879 INFO : 94% Done

11 May 2020 15:43:23,107 INFO : 95% Done

11 May 2020 15:43:23,331 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:23,331 INFO : Inserting SMAD4

11 May 2020 15:43:23,570 INFO : 96% Done

11 May 2020 15:43:23,752 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:23,752 INFO : Inserting STAT3

11 May 2020 15:43:23,757 INFO : 97% Done

11 May 2020 15:43:23,987 INFO : 98% Done

11 May 2020 15:43:24,276 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:24,276 INFO : Done parsing Skyline document.

11 May 2020 15:43:24,278 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:43:24,426 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:43:25,587 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:43:25,781 INFO : Cleaning up temp tables

11 May 2020 15:43:26,165 INFO : Completed import of Skyline document from CPDR-FFPE-ID-398_2020-01-28_10-35-37.sky.zip

11 May 2020 15:43:26,167 INFO : 100% Done

11 May 2020 15:43:26,180 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80141/CPDR-FFPE-ID-398_2020-01-28_10-35-37.sky.zip into the system

11 May 2020 15:43:26,181 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80188/CPDR-FFPE-ID-345_2020-01-28_11-13-27/CPDR-FFPE-ID-345.skyd into the system

11 May 2020 15:43:26,182 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80188/CPDR-FFPE-ID-345_2020-01-28_11-13-27/CPDR-FFPE-ID-345.skyd into the system

11 May 2020 15:43:26,182 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80188/CPDR-FFPE-ID-345_2020-01-28_11-13-27.sky.zip into the system

11 May 2020 15:43:26,188 INFO : Starting import from CPDR-FFPE-ID-345_2020-01-28_11-13-27.sky.zip

11 May 2020 15:43:26,196 INFO : Starting to import Skyline document from CPDR-FFPE-ID-345_2020-01-28_11-13-27.sky.zip

11 May 2020 15:43:26,216 INFO : Expanding CPDR-FFPE-ID-345.skyd

11 May 2020 15:43:26,675 INFO : Expanding CPDR-FFPE-ID-345.sky.view

11 May 2020 15:43:26,676 INFO : Expanding CPDR-FFPE-ID-345.sky

11 May 2020 15:43:26,753 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 15:43:27,364 INFO : Inserting TFF3

11 May 2020 15:43:27,371 INFO : 1% Done

11 May 2020 15:43:27,709 INFO : 2% Done

11 May 2020 15:43:27,922 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:27,922 INFO : Inserting AKT1

11 May 2020 15:43:27,926 INFO : 3% Done

11 May 2020 15:43:28,100 INFO : 4% Done

11 May 2020 15:43:28,313 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:28,314 INFO : Inserting AMACR

11 May 2020 15:43:28,318 INFO : 5% Done

11 May 2020 15:43:28,535 INFO : 6% Done

11 May 2020 15:43:28,785 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:28,785 INFO : Inserting ANDR

11 May 2020 15:43:28,793 INFO : 7% Done

11 May 2020 15:43:29,241 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:29,241 INFO : Inserting ANXA2

11 May 2020 15:43:29,246 INFO : 8% Done

11 May 2020 15:43:29,468 INFO : 9% Done

11 May 2020 15:43:29,689 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:29,689 INFO : Inserting AURKA

11 May 2020 15:43:29,694 INFO : 10% Done

11 May 2020 15:43:29,912 INFO : 11% Done

11 May 2020 15:43:30,131 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:30,132 INFO : Inserting BRAF

11 May 2020 15:43:30,136 INFO : 12% Done

11 May 2020 15:43:30,352 INFO : 13% Done

11 May 2020 15:43:30,571 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:30,571 INFO : Inserting CAMKK2

11 May 2020 15:43:30,575 INFO : 14% Done

11 May 2020 15:43:30,797 INFO : 15% Done

11 May 2020 15:43:31,008 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:31,009 INFO : Inserting CCND1

11 May 2020 15:43:31,013 INFO : 16% Done

11 May 2020 15:43:31,399 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:31,399 INFO : 17% Done

11 May 2020 15:43:31,399 INFO : Inserting CDN1A

11 May 2020 15:43:31,620 INFO : 18% Done

11 May 2020 15:43:31,835 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:31,835 INFO : Inserting CRISP3

11 May 2020 15:43:31,840 INFO : 19% Done

11 May 2020 15:43:32,056 INFO : 20% Done

11 May 2020 15:43:32,320 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:32,321 INFO : Inserting DCOR

11 May 2020 15:43:32,325 INFO : 21% Done

11 May 2020 15:43:32,539 INFO : 22% Done

11 May 2020 15:43:32,765 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:32,765 INFO : Inserting EGFR

11 May 2020 15:43:32,770 INFO : 23% Done

11 May 2020 15:43:32,981 INFO : 24% Done

11 May 2020 15:43:33,157 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:33,157 INFO : Inserting EZH2

11 May 2020 15:43:33,161 INFO : 25% Done

11 May 2020 15:43:33,644 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:33,645 INFO : Inserting FGFR1

11 May 2020 15:43:33,868 INFO : 26% Done

11 May 2020 15:43:34,082 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:34,082 INFO : Inserting FOLH1

11 May 2020 15:43:34,087 INFO : 27% Done

11 May 2020 15:43:34,321 INFO : 28% Done

11 May 2020 15:43:34,535 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:34,535 INFO : Inserting HIF1A

11 May 2020 15:43:34,539 INFO : 29% Done

11 May 2020 15:43:34,755 INFO : 30% Done

11 May 2020 15:43:34,969 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:34,969 INFO : Inserting HPN

11 May 2020 15:43:34,973 INFO : 31% Done

11 May 2020 15:43:35,192 INFO : 32% Done

11 May 2020 15:43:35,406 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:35,406 INFO : Inserting HSPB1

11 May 2020 15:43:35,410 INFO : 33% Done

11 May 2020 15:43:35,628 INFO : 34% Done

11 May 2020 15:43:35,844 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:35,845 INFO : Inserting HXC6

11 May 2020 15:43:35,849 INFO : 35% Done

11 May 2020 15:43:36,067 INFO : 36% Done

11 May 2020 15:43:36,279 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:36,280 INFO : Inserting KLK11

11 May 2020 15:43:36,508 INFO : 37% Done

11 May 2020 15:43:36,732 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:36,732 INFO : Inserting KLK2

11 May 2020 15:43:36,737 INFO : 38% Done

11 May 2020 15:43:36,950 INFO : 39% Done

11 May 2020 15:43:37,163 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:37,163 INFO : Inserting MMP2

11 May 2020 15:43:37,167 INFO : 40% Done

11 May 2020 15:43:37,380 INFO : 41% Done

11 May 2020 15:43:37,551 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:37,551 INFO : Inserting MMP9

11 May 2020 15:43:37,555 INFO : 42% Done

11 May 2020 15:43:37,768 INFO : 43% Done

11 May 2020 15:43:37,979 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:37,979 INFO : Inserting MUC1

11 May 2020 15:43:37,983 INFO : 44% Done

11 May 2020 15:43:38,201 INFO : 45% Done

11 May 2020 15:43:38,415 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:38,415 INFO : Inserting MUC6

11 May 2020 15:43:38,419 INFO : 46% Done

11 May 2020 15:43:38,810 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:38,810 INFO : Inserting MYC

11 May 2020 15:43:38,814 INFO : 47% Done

11 May 2020 15:43:38,997 INFO : 48% Done

11 May 2020 15:43:39,195 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:39,195 INFO : Inserting MYCN

11 May 2020 15:43:39,200 INFO : 49% Done

11 May 2020 15:43:39,402 INFO : 50% Done

11 May 2020 15:43:39,618 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:39,618 INFO : Inserting MYO6

11 May 2020 15:43:39,622 INFO : 51% Done

11 May 2020 15:43:39,839 INFO : 52% Done

11 May 2020 15:43:40,056 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:40,056 INFO : Inserting NCOA2

11 May 2020 15:43:40,061 INFO : 53% Done

11 May 2020 15:43:40,276 INFO : 54% Done

11 May 2020 15:43:40,488 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:40,488 INFO : Inserting NPY

11 May 2020 15:43:40,493 INFO : 55% Done

11 May 2020 15:43:40,708 INFO : 56% Done

11 May 2020 15:43:40,919 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:40,920 INFO : Inserting O51E2

11 May 2020 15:43:41,095 INFO : 57% Done

11 May 2020 15:43:41,304 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:41,304 INFO : Inserting OSTP

11 May 2020 15:43:41,308 INFO : 58% Done

11 May 2020 15:43:41,525 INFO : 59% Done

11 May 2020 15:43:41,736 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:41,736 INFO : Inserting P53

11 May 2020 15:43:41,741 INFO : 60% Done

11 May 2020 15:43:41,955 INFO : 61% Done

11 May 2020 15:43:42,165 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:42,165 INFO : Inserting PAFA

11 May 2020 15:43:42,169 INFO : 62% Done

11 May 2020 15:43:42,383 INFO : 63% Done

11 May 2020 15:43:42,593 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:42,593 INFO : Inserting PGFRB

11 May 2020 15:43:42,783 INFO : 64% Done

11 May 2020 15:43:42,992 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:42,992 INFO : Inserting PK3CA

11 May 2020 15:43:42,996 INFO : 65% Done

11 May 2020 15:43:43,211 INFO : 66% Done

11 May 2020 15:43:43,429 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:43,429 INFO : Inserting RAF1

11 May 2020 15:43:43,433 INFO : 67% Done

11 May 2020 15:43:43,648 INFO : 68% Done

11 May 2020 15:43:43,816 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:43,816 INFO : Inserting SERPINI1

11 May 2020 15:43:43,820 INFO : 69% Done

11 May 2020 15:43:44,038 INFO : 70% Done

11 May 2020 15:43:44,247 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:44,247 INFO : Inserting SPINK1

11 May 2020 15:43:44,251 INFO : 71% Done

11 May 2020 15:43:44,542 INFO : 72% Done

11 May 2020 15:43:44,752 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:44,752 INFO : Inserting SPRC

11 May 2020 15:43:44,984 INFO : 73% Done

11 May 2020 15:43:45,196 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:45,196 INFO : Inserting TGFB1

11 May 2020 15:43:45,200 INFO : 74% Done

11 May 2020 15:43:45,664 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:45,664 INFO : Inserting TMPS2

11 May 2020 15:43:45,669 INFO : 75% Done

11 May 2020 15:43:45,882 INFO : 76% Done

11 May 2020 15:43:46,092 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:46,092 INFO : Inserting TPM2

11 May 2020 15:43:46,096 INFO : 77% Done

11 May 2020 15:43:46,309 INFO : 78% Done

11 May 2020 15:43:46,518 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:46,519 INFO : Inserting TWST1

11 May 2020 15:43:46,523 INFO : 79% Done

11 May 2020 15:43:46,756 INFO : 80% Done

11 May 2020 15:43:46,965 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:46,965 INFO : Inserting VEGFA

11 May 2020 15:43:46,969 INFO : 81% Done

11 May 2020 15:43:47,183 INFO : 82% Done

11 May 2020 15:43:47,394 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:47,394 INFO : Inserting PSA

11 May 2020 15:43:47,398 INFO : 83% Done

11 May 2020 15:43:47,837 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:47,838 INFO : Inserting ERG_pan

11 May 2020 15:43:47,842 INFO : 84% Done

11 May 2020 15:43:48,058 INFO : 85% Done

11 May 2020 15:43:48,273 INFO : 86% Done

11 May 2020 15:43:48,537 INFO : 87% Done

11 May 2020 15:43:48,768 INFO : 88% Done

11 May 2020 15:43:48,981 INFO : 89% Done

11 May 2020 15:43:49,194 INFO : 90% Done

11 May 2020 15:43:49,405 DEBUG: Total peptides inserted: 7

11 May 2020 15:43:49,405 INFO : Inserting ETV1

11 May 2020 15:43:49,409 INFO : 91% Done

11 May 2020 15:43:49,622 INFO : 92% Done

11 May 2020 15:43:49,888 INFO : 93% Done

11 May 2020 15:43:50,097 DEBUG: Total peptides inserted: 3

11 May 2020 15:43:50,097 INFO : Inserting ERG8

11 May 2020 15:43:50,102 INFO : 94% Done

11 May 2020 15:43:50,354 INFO : 95% Done

11 May 2020 15:43:50,582 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:50,582 INFO : Inserting SMAD4

11 May 2020 15:43:50,587 INFO : 96% Done

11 May 2020 15:43:51,044 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:51,044 INFO : Inserting STAT3

11 May 2020 15:43:51,049 INFO : 97% Done

11 May 2020 15:43:51,255 INFO : 98% Done

11 May 2020 15:43:51,459 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:51,459 INFO : Done parsing Skyline document.

11 May 2020 15:43:51,461 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:43:51,678 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:43:52,858 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:43:53,152 INFO : Cleaning up temp tables

11 May 2020 15:43:53,626 INFO : Completed import of Skyline document from CPDR-FFPE-ID-345_2020-01-28_11-13-27.sky.zip

11 May 2020 15:43:53,628 INFO : 100% Done

11 May 2020 15:43:53,641 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80188/CPDR-FFPE-ID-345_2020-01-28_11-13-27.sky.zip into the system

11 May 2020 15:43:53,641 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80181/CPDR-FFPE-ID-83_2020-01-28_11-02-14/CPDR-FFPE-ID-83.skyd into the system

11 May 2020 15:43:53,642 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80181/CPDR-FFPE-ID-83_2020-01-28_11-02-14/CPDR-FFPE-ID-83.skyd into the system

11 May 2020 15:43:53,642 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80181/CPDR-FFPE-ID-83_2020-01-28_11-02-14.sky.zip into the system

11 May 2020 15:43:53,646 INFO : Starting import from CPDR-FFPE-ID-83_2020-01-28_11-02-14.sky.zip

11 May 2020 15:43:53,656 INFO : Starting to import Skyline document from CPDR-FFPE-ID-83_2020-01-28_11-02-14.sky.zip

11 May 2020 15:43:53,672 INFO : Expanding CPDR-FFPE-ID-83.skyd

11 May 2020 15:43:54,104 INFO : Expanding CPDR-FFPE-ID-83.sky.view

11 May 2020 15:43:54,105 INFO : Expanding CPDR-FFPE-ID-83.sky

11 May 2020 15:43:54,900 INFO : Inserting TFF3

11 May 2020 15:43:54,907 INFO : 1% Done

11 May 2020 15:43:55,326 INFO : 2% Done

11 May 2020 15:43:55,540 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:55,540 INFO : Inserting AKT1

11 May 2020 15:43:55,544 INFO : 3% Done

11 May 2020 15:43:55,712 INFO : 4% Done

11 May 2020 15:43:55,936 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:55,936 INFO : Inserting AMACR

11 May 2020 15:43:55,940 INFO : 5% Done

11 May 2020 15:43:56,101 INFO : 6% Done

11 May 2020 15:43:56,220 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:56,220 INFO : Inserting ANDR

11 May 2020 15:43:56,224 INFO : 7% Done

11 May 2020 15:43:56,348 INFO : 8% Done

11 May 2020 15:43:56,471 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:56,471 INFO : Inserting ANXA2

11 May 2020 15:43:56,645 INFO : 9% Done

11 May 2020 15:43:56,845 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:56,845 INFO : Inserting AURKA

11 May 2020 15:43:56,850 INFO : 10% Done

11 May 2020 15:43:57,052 INFO : 11% Done

11 May 2020 15:43:57,253 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:57,254 INFO : Inserting BRAF

11 May 2020 15:43:57,258 INFO : 12% Done

11 May 2020 15:43:57,462 INFO : 13% Done

11 May 2020 15:43:57,668 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:57,668 INFO : Inserting CAMKK2

11 May 2020 15:43:57,672 INFO : 14% Done

11 May 2020 15:43:57,875 INFO : 15% Done

11 May 2020 15:43:58,078 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:58,078 INFO : Inserting CCND1

11 May 2020 15:43:58,082 INFO : 16% Done

11 May 2020 15:43:58,322 INFO : 17% Done

11 May 2020 15:43:58,492 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:58,492 INFO : Inserting CDN1A

11 May 2020 15:43:58,717 INFO : 18% Done

11 May 2020 15:43:58,923 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:58,923 INFO : Inserting CRISP3

11 May 2020 15:43:58,928 INFO : 19% Done

11 May 2020 15:43:59,158 INFO : 20% Done

11 May 2020 15:43:59,368 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:59,368 INFO : Inserting DCOR

11 May 2020 15:43:59,372 INFO : 21% Done

11 May 2020 15:43:59,582 INFO : 22% Done

11 May 2020 15:43:59,787 DEBUG: Total peptides inserted: 2

11 May 2020 15:43:59,787 INFO : Inserting EGFR

11 May 2020 15:43:59,791 INFO : 23% Done

11 May 2020 15:43:59,998 INFO : 24% Done

11 May 2020 15:44:00,163 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:00,163 INFO : Inserting EZH2

11 May 2020 15:44:00,167 INFO : 25% Done

11 May 2020 15:44:00,578 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:00,578 INFO : Inserting FGFR1

11 May 2020 15:44:00,787 INFO : 26% Done

11 May 2020 15:44:01,008 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:01,008 INFO : Inserting FOLH1

11 May 2020 15:44:01,012 INFO : 27% Done

11 May 2020 15:44:01,221 INFO : 28% Done

11 May 2020 15:44:01,425 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:01,425 INFO : Inserting HIF1A

11 May 2020 15:44:01,429 INFO : 29% Done

11 May 2020 15:44:01,641 INFO : 30% Done

11 May 2020 15:44:01,856 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:01,856 INFO : Inserting HPN

11 May 2020 15:44:01,861 INFO : 31% Done

11 May 2020 15:44:02,069 INFO : 32% Done

11 May 2020 15:44:02,273 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:02,273 INFO : Inserting HSPB1

11 May 2020 15:44:02,277 INFO : 33% Done

11 May 2020 15:44:02,482 INFO : 34% Done

11 May 2020 15:44:02,681 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:02,681 INFO : Inserting HXC6

11 May 2020 15:44:02,685 INFO : 35% Done

11 May 2020 15:44:02,888 INFO : 36% Done

11 May 2020 15:44:03,087 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:03,088 INFO : Inserting KLK11

11 May 2020 15:44:03,092 INFO : 37% Done

11 May 2020 15:44:03,504 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:03,504 INFO : Inserting KLK2

11 May 2020 15:44:03,508 INFO : 38% Done

11 May 2020 15:44:03,721 INFO : 39% Done

11 May 2020 15:44:03,926 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:03,926 INFO : Inserting MMP2

11 May 2020 15:44:03,930 INFO : 40% Done

11 May 2020 15:44:04,155 INFO : 41% Done

11 May 2020 15:44:04,316 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:04,316 INFO : Inserting MMP9

11 May 2020 15:44:04,320 INFO : 42% Done

11 May 2020 15:44:04,540 INFO : 43% Done

11 May 2020 15:44:04,735 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:04,735 INFO : Inserting MUC1

11 May 2020 15:44:04,740 INFO : 44% Done

11 May 2020 15:44:04,948 INFO : 45% Done

11 May 2020 15:44:05,141 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:05,142 INFO : Inserting MUC6

11 May 2020 15:44:05,337 INFO : 46% Done

11 May 2020 15:44:05,540 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:05,540 INFO : Inserting MYC

11 May 2020 15:44:05,542 INFO : 47% Done

11 May 2020 15:44:05,631 INFO : 48% Done

11 May 2020 15:44:05,718 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:05,718 INFO : Inserting MYCN

11 May 2020 15:44:05,720 INFO : 49% Done

11 May 2020 15:44:05,808 INFO : 50% Done

11 May 2020 15:44:05,894 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:05,894 INFO : Inserting MYO6

11 May 2020 15:44:05,896 INFO : 51% Done

11 May 2020 15:44:05,992 INFO : 52% Done

11 May 2020 15:44:06,078 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:06,078 INFO : Inserting NCOA2

11 May 2020 15:44:06,080 INFO : 53% Done

11 May 2020 15:44:06,167 INFO : 54% Done

11 May 2020 15:44:06,253 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:06,253 INFO : Inserting NPY

11 May 2020 15:44:06,255 INFO : 55% Done

11 May 2020 15:44:06,342 INFO : 56% Done

11 May 2020 15:44:06,428 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:06,428 INFO : Inserting O51E2

11 May 2020 15:44:06,499 INFO : 57% Done

11 May 2020 15:44:06,643 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:06,643 INFO : Inserting OSTP

11 May 2020 15:44:06,646 INFO : 58% Done

11 May 2020 15:44:06,823 INFO : 59% Done

11 May 2020 15:44:06,993 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:06,993 INFO : Inserting P53

11 May 2020 15:44:06,995 INFO : 60% Done

11 May 2020 15:44:07,152 INFO : 61% Done

11 May 2020 15:44:07,324 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:07,324 INFO : Inserting PAFA

11 May 2020 15:44:07,326 INFO : 62% Done

11 May 2020 15:44:07,478 INFO : 63% Done

11 May 2020 15:44:07,614 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:07,615 INFO : Inserting PGFRB

11 May 2020 15:44:07,724 INFO : 64% Done

11 May 2020 15:44:07,851 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:07,851 INFO : Inserting PK3CA

11 May 2020 15:44:07,853 INFO : 65% Done

11 May 2020 15:44:08,025 INFO : 66% Done

11 May 2020 15:44:08,137 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:08,137 INFO : Inserting RAF1

11 May 2020 15:44:08,139 INFO : 67% Done

11 May 2020 15:44:08,249 INFO : 68% Done

11 May 2020 15:44:08,338 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:08,338 INFO : Inserting SERPINI1

11 May 2020 15:44:08,340 INFO : 69% Done

11 May 2020 15:44:08,452 INFO : 70% Done

11 May 2020 15:44:08,561 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:08,562 INFO : Inserting SPINK1

11 May 2020 15:44:08,563 INFO : 71% Done

11 May 2020 15:44:08,672 INFO : 72% Done

11 May 2020 15:44:08,778 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:08,778 INFO : Inserting SPRC

11 May 2020 15:44:08,889 INFO : 73% Done

11 May 2020 15:44:08,998 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:08,998 INFO : Inserting TGFB1

11 May 2020 15:44:09,001 INFO : 74% Done

11 May 2020 15:44:09,218 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:09,218 INFO : Inserting TMPS2

11 May 2020 15:44:09,220 INFO : 75% Done

11 May 2020 15:44:09,328 INFO : 76% Done

11 May 2020 15:44:09,867 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:09,867 INFO : Inserting TPM2

11 May 2020 15:44:09,870 INFO : 77% Done

11 May 2020 15:44:10,038 INFO : 78% Done

11 May 2020 15:44:10,122 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:10,123 INFO : Inserting TWST1

11 May 2020 15:44:10,124 INFO : 79% Done

11 May 2020 15:44:10,208 INFO : 80% Done

11 May 2020 15:44:10,291 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:10,291 INFO : Inserting VEGFA

11 May 2020 15:44:10,293 INFO : 81% Done

11 May 2020 15:44:10,392 INFO : 82% Done

11 May 2020 15:44:10,479 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:10,479 INFO : Inserting PSA

11 May 2020 15:44:10,481 INFO : 83% Done

11 May 2020 15:44:10,606 INFO : 84% Done

11 May 2020 15:44:10,782 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:10,782 INFO : Inserting ERG_pan

11 May 2020 15:44:10,959 INFO : 85% Done

11 May 2020 15:44:11,122 INFO : 86% Done

11 May 2020 15:44:11,275 INFO : 87% Done

11 May 2020 15:44:11,429 INFO : 88% Done

11 May 2020 15:44:11,590 INFO : 89% Done

11 May 2020 15:44:11,769 INFO : 90% Done

11 May 2020 15:44:11,953 DEBUG: Total peptides inserted: 7

11 May 2020 15:44:11,953 INFO : Inserting ETV1

11 May 2020 15:44:11,955 INFO : 91% Done

11 May 2020 15:44:12,139 INFO : 92% Done

11 May 2020 15:44:12,323 INFO : 93% Done

11 May 2020 15:44:12,506 DEBUG: Total peptides inserted: 3

11 May 2020 15:44:12,506 INFO : Inserting ERG8

11 May 2020 15:44:12,510 INFO : 94% Done

11 May 2020 15:44:12,632 INFO : 95% Done

11 May 2020 15:44:12,747 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:12,747 INFO : Inserting SMAD4

11 May 2020 15:44:12,751 INFO : 96% Done

11 May 2020 15:44:12,968 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:12,969 INFO : Inserting STAT3

11 May 2020 15:44:12,973 INFO : 97% Done

11 May 2020 15:44:13,090 INFO : 98% Done

11 May 2020 15:44:13,209 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:13,209 INFO : Done parsing Skyline document.

11 May 2020 15:44:13,211 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:44:13,277 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:44:13,777 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:44:13,958 INFO : Cleaning up temp tables

11 May 2020 15:44:14,236 INFO : Completed import of Skyline document from CPDR-FFPE-ID-83_2020-01-28_11-02-14.sky.zip

11 May 2020 15:44:14,237 INFO : 100% Done

11 May 2020 15:44:14,244 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80181/CPDR-FFPE-ID-83_2020-01-28_11-02-14.sky.zip into the system

11 May 2020 15:44:14,244 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80179/CPDR-FFPE-ID-375_2020-01-28_11-00-52/CPDR-FFPE-ID-375.skyd into the system

11 May 2020 15:44:14,244 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80179/CPDR-FFPE-ID-375_2020-01-28_11-00-52/CPDR-FFPE-ID-375.skyd into the system

11 May 2020 15:44:14,245 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80179/CPDR-FFPE-ID-375_2020-01-28_11-00-52.sky.zip into the system

11 May 2020 15:44:14,247 INFO : Starting import from CPDR-FFPE-ID-375_2020-01-28_11-00-52.sky.zip

11 May 2020 15:44:14,251 INFO : Starting to import Skyline document from CPDR-FFPE-ID-375_2020-01-28_11-00-52.sky.zip

11 May 2020 15:44:14,261 INFO : Expanding CPDR-FFPE-ID-375.skyd

11 May 2020 15:44:14,447 INFO : Expanding CPDR-FFPE-ID-375.sky.view

11 May 2020 15:44:14,448 INFO : Expanding CPDR-FFPE-ID-375.sky

11 May 2020 15:44:14,764 INFO : Inserting TFF3

11 May 2020 15:44:14,770 INFO : 1% Done

11 May 2020 15:44:14,956 INFO : 2% Done

11 May 2020 15:44:15,112 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:15,112 INFO : Inserting AKT1

11 May 2020 15:44:15,113 INFO : 3% Done

11 May 2020 15:44:15,226 INFO : 4% Done

11 May 2020 15:44:15,366 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:15,366 INFO : Inserting AMACR

11 May 2020 15:44:15,368 INFO : 5% Done

11 May 2020 15:44:15,512 INFO : 6% Done

11 May 2020 15:44:15,644 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:15,644 INFO : Inserting ANDR

11 May 2020 15:44:15,647 INFO : 7% Done

11 May 2020 15:44:15,902 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:15,902 INFO : 8% Done

11 May 2020 15:44:15,902 INFO : Inserting ANXA2

11 May 2020 15:44:16,025 INFO : 9% Done

11 May 2020 15:44:16,158 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:16,158 INFO : Inserting AURKA

11 May 2020 15:44:16,161 INFO : 10% Done

11 May 2020 15:44:16,292 INFO : 11% Done

11 May 2020 15:44:16,412 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:16,412 INFO : Inserting BRAF

11 May 2020 15:44:16,414 INFO : 12% Done

11 May 2020 15:44:16,539 INFO : 13% Done

11 May 2020 15:44:16,655 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:16,655 INFO : Inserting CAMKK2

11 May 2020 15:44:16,657 INFO : 14% Done

11 May 2020 15:44:16,774 INFO : 15% Done

11 May 2020 15:44:16,908 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:16,908 INFO : Inserting CCND1

11 May 2020 15:44:16,910 INFO : 16% Done

11 May 2020 15:44:17,214 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:17,214 INFO : Inserting CDN1A

11 May 2020 15:44:17,217 INFO : 17% Done

11 May 2020 15:44:17,395 INFO : 18% Done

11 May 2020 15:44:17,567 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:17,567 INFO : Inserting CRISP3

11 May 2020 15:44:17,569 INFO : 19% Done

11 May 2020 15:44:17,732 INFO : 20% Done

11 May 2020 15:44:17,908 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:17,908 INFO : Inserting DCOR

11 May 2020 15:44:17,910 INFO : 21% Done

11 May 2020 15:44:18,078 INFO : 22% Done

11 May 2020 15:44:18,233 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:18,233 INFO : Inserting EGFR

11 May 2020 15:44:18,235 INFO : 23% Done

11 May 2020 15:44:18,419 INFO : 24% Done

11 May 2020 15:44:18,580 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:18,580 INFO : Inserting EZH2

11 May 2020 15:44:18,582 INFO : 25% Done

11 May 2020 15:44:18,917 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:18,917 INFO : Inserting FGFR1

11 May 2020 15:44:19,080 INFO : 26% Done

11 May 2020 15:44:19,284 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:19,284 INFO : Inserting FOLH1

11 May 2020 15:44:19,287 INFO : 27% Done

11 May 2020 15:44:19,471 INFO : 28% Done

11 May 2020 15:44:19,653 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:19,653 INFO : Inserting HIF1A

11 May 2020 15:44:19,655 INFO : 29% Done

11 May 2020 15:44:19,824 INFO : 30% Done

11 May 2020 15:44:19,996 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:19,996 INFO : Inserting HPN

11 May 2020 15:44:19,998 INFO : 31% Done

11 May 2020 15:44:20,155 INFO : 32% Done

11 May 2020 15:44:20,318 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:20,318 INFO : Inserting HSPB1

11 May 2020 15:44:20,320 INFO : 33% Done

11 May 2020 15:44:20,475 INFO : 34% Done

11 May 2020 15:44:20,644 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:20,645 INFO : Inserting HXC6

11 May 2020 15:44:20,647 INFO : 35% Done

11 May 2020 15:44:20,835 INFO : 36% Done

11 May 2020 15:44:20,979 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:20,979 INFO : Inserting KLK11

11 May 2020 15:44:21,126 INFO : 37% Done

11 May 2020 15:44:21,272 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:21,272 INFO : Inserting KLK2

11 May 2020 15:44:21,274 INFO : 38% Done

11 May 2020 15:44:21,419 INFO : 39% Done

11 May 2020 15:44:21,563 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:21,563 INFO : Inserting MMP2

11 May 2020 15:44:21,565 INFO : 40% Done

11 May 2020 15:44:21,701 INFO : 41% Done

11 May 2020 15:44:21,826 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:21,826 INFO : Inserting MMP9

11 May 2020 15:44:21,827 INFO : 42% Done

11 May 2020 15:44:21,965 INFO : 43% Done

11 May 2020 15:44:22,097 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:22,097 INFO : Inserting MUC1

11 May 2020 15:44:22,099 INFO : 44% Done

11 May 2020 15:44:22,241 INFO : 45% Done

11 May 2020 15:44:22,372 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:22,372 INFO : Inserting MUC6

11 May 2020 15:44:22,505 INFO : 46% Done

11 May 2020 15:44:22,636 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:22,636 INFO : Inserting MYC

11 May 2020 15:44:22,637 INFO : 47% Done

11 May 2020 15:44:22,757 INFO : 48% Done

11 May 2020 15:44:22,935 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:22,935 INFO : Inserting MYCN

11 May 2020 15:44:22,937 INFO : 49% Done

11 May 2020 15:44:23,069 INFO : 50% Done

11 May 2020 15:44:23,242 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:23,242 INFO : Inserting MYO6

11 May 2020 15:44:23,244 INFO : 51% Done

11 May 2020 15:44:23,423 INFO : 52% Done

11 May 2020 15:44:23,613 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:23,613 INFO : Inserting NCOA2

11 May 2020 15:44:23,616 INFO : 53% Done

11 May 2020 15:44:23,765 INFO : 54% Done

11 May 2020 15:44:23,916 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:23,916 INFO : Inserting NPY

11 May 2020 15:44:23,918 INFO : 55% Done

11 May 2020 15:44:24,069 INFO : 56% Done

11 May 2020 15:44:24,245 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:24,245 INFO : Inserting O51E2

11 May 2020 15:44:24,386 INFO : 57% Done

11 May 2020 15:44:24,560 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:24,560 INFO : Inserting OSTP

11 May 2020 15:44:24,562 INFO : 58% Done

11 May 2020 15:44:24,758 INFO : 59% Done

11 May 2020 15:44:24,938 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:24,938 INFO : Inserting P53

11 May 2020 15:44:24,940 INFO : 60% Done

11 May 2020 15:44:25,133 INFO : 61% Done

11 May 2020 15:44:25,308 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:25,308 INFO : Inserting PAFA

11 May 2020 15:44:25,310 INFO : 62% Done

11 May 2020 15:44:25,487 INFO : 63% Done

11 May 2020 15:44:25,696 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:25,696 INFO : Inserting PGFRB

11 May 2020 15:44:25,849 INFO : 64% Done

11 May 2020 15:44:26,029 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:26,029 INFO : Inserting PK3CA

11 May 2020 15:44:26,031 INFO : 65% Done

11 May 2020 15:44:26,206 INFO : 66% Done

11 May 2020 15:44:26,369 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:26,369 INFO : Inserting RAF1

11 May 2020 15:44:26,371 INFO : 67% Done

11 May 2020 15:44:26,536 INFO : 68% Done

11 May 2020 15:44:26,706 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:26,706 INFO : Inserting SERPINI1

11 May 2020 15:44:26,708 INFO : 69% Done

11 May 2020 15:44:26,883 INFO : 70% Done

11 May 2020 15:44:27,057 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:27,057 INFO : Inserting SPINK1

11 May 2020 15:44:27,059 INFO : 71% Done

11 May 2020 15:44:27,237 INFO : 72% Done

11 May 2020 15:44:27,407 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:27,407 INFO : Inserting SPRC

11 May 2020 15:44:27,577 INFO : 73% Done

11 May 2020 15:44:27,736 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:27,736 INFO : Inserting TGFB1

11 May 2020 15:44:27,738 INFO : 74% Done

11 May 2020 15:44:28,057 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:28,058 INFO : Inserting TMPS2

11 May 2020 15:44:28,060 INFO : 75% Done

11 May 2020 15:44:28,208 INFO : 76% Done

11 May 2020 15:44:28,357 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:28,357 INFO : Inserting TPM2

11 May 2020 15:44:28,359 INFO : 77% Done

11 May 2020 15:44:28,511 INFO : 78% Done

11 May 2020 15:44:28,655 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:28,655 INFO : Inserting TWST1

11 May 2020 15:44:28,657 INFO : 79% Done

11 May 2020 15:44:28,799 INFO : 80% Done

11 May 2020 15:44:28,939 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:28,939 INFO : Inserting VEGFA

11 May 2020 15:44:28,941 INFO : 81% Done

11 May 2020 15:44:29,080 INFO : 82% Done

11 May 2020 15:44:29,212 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:29,213 INFO : Inserting PSA

11 May 2020 15:44:29,214 INFO : 83% Done

11 May 2020 15:44:29,481 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:29,481 INFO : Inserting ERG_pan

11 May 2020 15:44:29,483 INFO : 84% Done

11 May 2020 15:44:29,616 INFO : 85% Done

11 May 2020 15:44:29,740 INFO : 86% Done

11 May 2020 15:44:29,866 INFO : 87% Done

11 May 2020 15:44:29,991 INFO : 88% Done

11 May 2020 15:44:30,109 INFO : 89% Done

11 May 2020 15:44:30,225 INFO : 90% Done

11 May 2020 15:44:30,341 DEBUG: Total peptides inserted: 7

11 May 2020 15:44:30,341 INFO : Inserting ETV1

11 May 2020 15:44:30,343 INFO : 91% Done

11 May 2020 15:44:30,460 INFO : 92% Done

11 May 2020 15:44:30,576 INFO : 93% Done

11 May 2020 15:44:30,733 DEBUG: Total peptides inserted: 3

11 May 2020 15:44:30,733 INFO : Inserting ERG8

11 May 2020 15:44:30,735 INFO : 94% Done

11 May 2020 15:44:30,848 INFO : 95% Done

11 May 2020 15:44:30,959 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:30,959 INFO : Inserting SMAD4

11 May 2020 15:44:30,961 INFO : 96% Done

11 May 2020 15:44:31,184 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:31,184 INFO : Inserting STAT3

11 May 2020 15:44:31,186 INFO : 97% Done

11 May 2020 15:44:31,323 INFO : 98% Done

11 May 2020 15:44:31,481 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:31,481 INFO : Done parsing Skyline document.

11 May 2020 15:44:31,483 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:44:31,591 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:44:32,350 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:44:32,593 INFO : Cleaning up temp tables

11 May 2020 15:44:32,595 INFO : Completed import of Skyline document from CPDR-FFPE-ID-375_2020-01-28_11-00-52.sky.zip

11 May 2020 15:44:32,615 INFO : 100% Done

11 May 2020 15:44:32,621 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80179/CPDR-FFPE-ID-375_2020-01-28_11-00-52.sky.zip into the system

11 May 2020 15:44:32,621 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80178/CPDR-FFPE-ID-411_2020-01-28_11-00-12/CPDR-FFPE-ID-411.skyd into the system

11 May 2020 15:44:32,623 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80178/CPDR-FFPE-ID-411_2020-01-28_11-00-12/CPDR-FFPE-ID-411.skyd into the system

11 May 2020 15:44:32,623 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80178/CPDR-FFPE-ID-411_2020-01-28_11-00-12.sky.zip into the system

11 May 2020 15:44:32,625 INFO : Starting import from CPDR-FFPE-ID-411_2020-01-28_11-00-12.sky.zip

11 May 2020 15:44:32,630 INFO : Starting to import Skyline document from CPDR-FFPE-ID-411_2020-01-28_11-00-12.sky.zip

11 May 2020 15:44:32,639 INFO : Expanding CPDR-FFPE-ID-411.skyd

11 May 2020 15:44:32,894 INFO : Expanding CPDR-FFPE-ID-411.sky.view

11 May 2020 15:44:32,895 INFO : Expanding CPDR-FFPE-ID-411.sky

11 May 2020 15:44:33,383 INFO : Inserting TFF3

11 May 2020 15:44:33,392 INFO : 1% Done

11 May 2020 15:44:33,626 INFO : 2% Done

11 May 2020 15:44:33,852 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:33,852 INFO : Inserting AKT1

11 May 2020 15:44:33,856 INFO : 3% Done

11 May 2020 15:44:34,033 INFO : 4% Done

11 May 2020 15:44:34,126 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:34,126 INFO : Inserting AMACR

11 May 2020 15:44:34,127 INFO : 5% Done

11 May 2020 15:44:34,221 INFO : 6% Done

11 May 2020 15:44:34,314 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:34,314 INFO : Inserting ANDR

11 May 2020 15:44:34,317 INFO : 7% Done

11 May 2020 15:44:34,438 INFO : 8% Done

11 May 2020 15:44:34,538 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:34,539 INFO : Inserting ANXA2

11 May 2020 15:44:34,771 INFO : 9% Done

11 May 2020 15:44:34,995 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:34,995 INFO : Inserting AURKA

11 May 2020 15:44:34,999 INFO : 10% Done

11 May 2020 15:44:35,239 INFO : 11% Done

11 May 2020 15:44:35,482 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:35,482 INFO : Inserting BRAF

11 May 2020 15:44:35,486 INFO : 12% Done

11 May 2020 15:44:35,715 INFO : 13% Done

11 May 2020 15:44:35,939 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:35,939 INFO : Inserting CAMKK2

11 May 2020 15:44:35,943 INFO : 14% Done

11 May 2020 15:44:36,172 INFO : 15% Done

11 May 2020 15:44:36,395 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:36,395 INFO : Inserting CCND1

11 May 2020 15:44:36,399 INFO : 16% Done

11 May 2020 15:44:36,627 INFO : 17% Done

11 May 2020 15:44:36,810 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:36,810 INFO : Inserting CDN1A

11 May 2020 15:44:37,071 INFO : 18% Done

11 May 2020 15:44:37,294 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:37,294 INFO : Inserting CRISP3

11 May 2020 15:44:37,298 INFO : 19% Done

11 May 2020 15:44:37,525 INFO : 20% Done

11 May 2020 15:44:37,749 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:37,749 INFO : Inserting DCOR

11 May 2020 15:44:37,754 INFO : 21% Done

11 May 2020 15:44:37,980 INFO : 22% Done

11 May 2020 15:44:38,205 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:38,206 INFO : Inserting EGFR

11 May 2020 15:44:38,210 INFO : 23% Done

11 May 2020 15:44:38,435 INFO : 24% Done

11 May 2020 15:44:38,613 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:38,613 INFO : Inserting EZH2

11 May 2020 15:44:38,617 INFO : 25% Done

11 May 2020 15:44:39,071 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:39,071 INFO : Inserting FGFR1

11 May 2020 15:44:39,284 INFO : 26% Done

11 May 2020 15:44:39,503 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:39,503 INFO : Inserting FOLH1

11 May 2020 15:44:39,508 INFO : 27% Done

11 May 2020 15:44:39,748 INFO : 28% Done

11 May 2020 15:44:39,948 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:39,948 INFO : Inserting HIF1A

11 May 2020 15:44:39,953 INFO : 29% Done

11 May 2020 15:44:40,180 INFO : 30% Done

11 May 2020 15:44:40,381 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:40,381 INFO : Inserting HPN

11 May 2020 15:44:40,386 INFO : 31% Done

11 May 2020 15:44:40,631 INFO : 32% Done

11 May 2020 15:44:40,897 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:40,897 INFO : Inserting HSPB1

11 May 2020 15:44:40,902 INFO : 33% Done

11 May 2020 15:44:41,072 INFO : 34% Done

11 May 2020 15:44:41,168 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:41,168 INFO : Inserting HXC6

11 May 2020 15:44:41,170 INFO : 35% Done

11 May 2020 15:44:41,282 INFO : 36% Done

11 May 2020 15:44:41,405 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:41,405 INFO : Inserting KLK11

11 May 2020 15:44:41,509 INFO : 37% Done

11 May 2020 15:44:41,621 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:41,621 INFO : Inserting KLK2

11 May 2020 15:44:41,624 INFO : 38% Done

11 May 2020 15:44:41,713 INFO : 39% Done

11 May 2020 15:44:41,799 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:41,799 INFO : Inserting MMP2

11 May 2020 15:44:41,800 INFO : 40% Done

11 May 2020 15:44:41,907 INFO : 41% Done

11 May 2020 15:44:41,974 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:41,974 INFO : Inserting MMP9

11 May 2020 15:44:41,976 INFO : 42% Done

11 May 2020 15:44:42,107 INFO : 43% Done

11 May 2020 15:44:42,305 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:42,305 INFO : Inserting MUC1

11 May 2020 15:44:42,310 INFO : 44% Done

11 May 2020 15:44:42,513 INFO : 45% Done

11 May 2020 15:44:42,730 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:42,730 INFO : Inserting MUC6

11 May 2020 15:44:42,934 INFO : 46% Done

11 May 2020 15:44:43,134 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:43,134 INFO : Inserting MYC

11 May 2020 15:44:43,138 INFO : 47% Done

11 May 2020 15:44:43,339 INFO : 48% Done

11 May 2020 15:44:43,536 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:43,537 INFO : Inserting MYCN

11 May 2020 15:44:43,541 INFO : 49% Done

11 May 2020 15:44:43,740 INFO : 50% Done

11 May 2020 15:44:43,936 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:43,937 INFO : Inserting MYO6

11 May 2020 15:44:43,941 INFO : 51% Done

11 May 2020 15:44:44,140 INFO : 52% Done

11 May 2020 15:44:44,337 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:44,337 INFO : Inserting NCOA2

11 May 2020 15:44:44,341 INFO : 53% Done

11 May 2020 15:44:44,552 INFO : 54% Done

11 May 2020 15:44:44,755 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:44,755 INFO : Inserting NPY

11 May 2020 15:44:44,760 INFO : 55% Done

11 May 2020 15:44:44,967 INFO : 56% Done

11 May 2020 15:44:45,169 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:45,169 INFO : Inserting O51E2

11 May 2020 15:44:45,322 INFO : 57% Done

11 May 2020 15:44:45,517 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:45,517 INFO : Inserting OSTP

11 May 2020 15:44:45,521 INFO : 58% Done

11 May 2020 15:44:45,827 INFO : 59% Done

11 May 2020 15:44:46,046 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:46,047 INFO : Inserting P53

11 May 2020 15:44:46,050 INFO : 60% Done

11 May 2020 15:44:46,238 INFO : 61% Done

11 May 2020 15:44:46,442 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:46,443 INFO : Inserting PAFA

11 May 2020 15:44:46,446 INFO : 62% Done

11 May 2020 15:44:46,656 INFO : 63% Done

11 May 2020 15:44:46,894 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:46,894 INFO : Inserting PGFRB

11 May 2020 15:44:46,898 INFO : 64% Done

11 May 2020 15:44:47,304 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:47,305 INFO : Inserting PK3CA

11 May 2020 15:44:47,309 INFO : 65% Done

11 May 2020 15:44:47,536 INFO : 66% Done

11 May 2020 15:44:47,758 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:47,759 INFO : Inserting RAF1

11 May 2020 15:44:47,763 INFO : 67% Done

11 May 2020 15:44:48,009 INFO : 68% Done

11 May 2020 15:44:48,188 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:48,189 INFO : Inserting SERPINI1

11 May 2020 15:44:48,193 INFO : 69% Done

11 May 2020 15:44:48,421 INFO : 70% Done

11 May 2020 15:44:48,652 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:48,653 INFO : Inserting SPINK1

11 May 2020 15:44:48,657 INFO : 71% Done

11 May 2020 15:44:48,889 INFO : 72% Done

11 May 2020 15:44:49,116 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:49,116 INFO : Inserting SPRC

11 May 2020 15:44:49,120 INFO : 73% Done

11 May 2020 15:44:49,574 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:49,574 INFO : Inserting TGFB1

11 May 2020 15:44:49,579 INFO : 74% Done

11 May 2020 15:44:50,027 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:50,028 INFO : Inserting TMPS2

11 May 2020 15:44:50,032 INFO : 75% Done

11 May 2020 15:44:50,258 INFO : 76% Done

11 May 2020 15:44:50,482 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:50,483 INFO : Inserting TPM2

11 May 2020 15:44:50,487 INFO : 77% Done

11 May 2020 15:44:50,714 INFO : 78% Done

11 May 2020 15:44:50,939 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:50,939 INFO : Inserting TWST1

11 May 2020 15:44:50,943 INFO : 79% Done

11 May 2020 15:44:51,170 INFO : 80% Done

11 May 2020 15:44:51,393 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:51,393 INFO : Inserting VEGFA

11 May 2020 15:44:51,398 INFO : 81% Done

11 May 2020 15:44:51,624 INFO : 82% Done

11 May 2020 15:44:51,849 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:51,849 INFO : Inserting PSA

11 May 2020 15:44:51,853 INFO : 83% Done

11 May 2020 15:44:52,307 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:52,307 INFO : Inserting ERG_pan

11 May 2020 15:44:52,311 INFO : 84% Done

11 May 2020 15:44:52,524 INFO : 85% Done

11 May 2020 15:44:52,763 INFO : 86% Done

11 May 2020 15:44:52,992 INFO : 87% Done

11 May 2020 15:44:53,220 INFO : 88% Done

11 May 2020 15:44:53,495 INFO : 89% Done

11 May 2020 15:44:53,722 INFO : 90% Done

11 May 2020 15:44:53,947 DEBUG: Total peptides inserted: 7

11 May 2020 15:44:53,947 INFO : Inserting ETV1

11 May 2020 15:44:53,951 INFO : 91% Done

11 May 2020 15:44:54,212 INFO : 92% Done

11 May 2020 15:44:54,443 INFO : 93% Done

11 May 2020 15:44:54,667 DEBUG: Total peptides inserted: 3

11 May 2020 15:44:54,667 INFO : Inserting ERG8

11 May 2020 15:44:54,672 INFO : 94% Done

11 May 2020 15:44:54,902 INFO : 95% Done

11 May 2020 15:44:55,131 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:55,131 INFO : Inserting SMAD4

11 May 2020 15:44:55,365 INFO : 96% Done

11 May 2020 15:44:55,558 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:55,559 INFO : Inserting STAT3

11 May 2020 15:44:55,563 INFO : 97% Done

11 May 2020 15:44:55,789 INFO : 98% Done

11 May 2020 15:44:56,012 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:56,012 INFO : Done parsing Skyline document.

11 May 2020 15:44:56,014 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:44:56,163 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:44:57,109 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:44:57,416 INFO : Cleaning up temp tables

11 May 2020 15:44:57,708 INFO : Completed import of Skyline document from CPDR-FFPE-ID-411_2020-01-28_11-00-12.sky.zip

11 May 2020 15:44:57,709 INFO : 100% Done

11 May 2020 15:44:57,717 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80178/CPDR-FFPE-ID-411_2020-01-28_11-00-12.sky.zip into the system

11 May 2020 15:44:57,717 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80137/CPDR-FFPE-ID-347_2020-01-28_10-32-58/CPDR-FFPE-ID-347.skyd into the system

11 May 2020 15:44:57,719 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80137/CPDR-FFPE-ID-347_2020-01-28_10-32-58/CPDR-FFPE-ID-347.skyd into the system

11 May 2020 15:44:57,719 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80137/CPDR-FFPE-ID-347_2020-01-28_10-32-58.sky.zip into the system

11 May 2020 15:44:57,722 INFO : Starting import from CPDR-FFPE-ID-347_2020-01-28_10-32-58.sky.zip

11 May 2020 15:44:57,727 INFO : Starting to import Skyline document from CPDR-FFPE-ID-347_2020-01-28_10-32-58.sky.zip

11 May 2020 15:44:57,739 INFO : Expanding CPDR-FFPE-ID-347.skyd

11 May 2020 15:44:58,045 INFO : Expanding CPDR-FFPE-ID-347.sky.view

11 May 2020 15:44:58,045 INFO : Expanding CPDR-FFPE-ID-347.sky

11 May 2020 15:44:58,587 INFO : Inserting TFF3

11 May 2020 15:44:58,596 INFO : 1% Done

11 May 2020 15:44:58,803 INFO : 2% Done

11 May 2020 15:44:59,005 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:59,006 INFO : Inserting AKT1

11 May 2020 15:44:59,010 INFO : 3% Done

11 May 2020 15:44:59,176 INFO : 4% Done

11 May 2020 15:44:59,372 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:59,372 INFO : Inserting AMACR

11 May 2020 15:44:59,376 INFO : 5% Done

11 May 2020 15:44:59,582 INFO : 6% Done

11 May 2020 15:44:59,785 DEBUG: Total peptides inserted: 2

11 May 2020 15:44:59,785 INFO : Inserting ANDR

11 May 2020 15:44:59,790 INFO : 7% Done

11 May 2020 15:44:59,996 INFO : 8% Done

11 May 2020 15:45:00,197 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:00,197 INFO : Inserting ANXA2

11 May 2020 15:45:00,410 INFO : 9% Done

11 May 2020 15:45:00,609 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:00,609 INFO : Inserting AURKA

11 May 2020 15:45:00,613 INFO : 10% Done

11 May 2020 15:45:00,817 INFO : 11% Done

11 May 2020 15:45:01,018 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:01,019 INFO : Inserting BRAF

11 May 2020 15:45:01,023 INFO : 12% Done

11 May 2020 15:45:01,227 INFO : 13% Done

11 May 2020 15:45:01,428 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:01,428 INFO : Inserting CAMKK2

11 May 2020 15:45:01,432 INFO : 14% Done

11 May 2020 15:45:01,572 INFO : 15% Done

11 May 2020 15:45:01,682 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:01,682 INFO : Inserting CCND1

11 May 2020 15:45:01,684 INFO : 16% Done

11 May 2020 15:45:01,838 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:01,838 INFO : 17% Done

11 May 2020 15:45:01,838 INFO : Inserting CDN1A

11 May 2020 15:45:01,936 INFO : 18% Done

11 May 2020 15:45:02,025 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:02,025 INFO : Inserting CRISP3

11 May 2020 15:45:02,027 INFO : 19% Done

11 May 2020 15:45:02,229 INFO : 20% Done

11 May 2020 15:45:02,426 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:02,426 INFO : Inserting DCOR

11 May 2020 15:45:02,430 INFO : 21% Done

11 May 2020 15:45:02,635 INFO : 22% Done

11 May 2020 15:45:02,909 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:02,909 INFO : Inserting EGFR

11 May 2020 15:45:02,914 INFO : 23% Done

11 May 2020 15:45:03,118 INFO : 24% Done

11 May 2020 15:45:03,282 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:03,282 INFO : Inserting EZH2

11 May 2020 15:45:03,286 INFO : 25% Done

11 May 2020 15:45:03,695 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:03,696 INFO : Inserting FGFR1

11 May 2020 15:45:03,904 INFO : 26% Done

11 May 2020 15:45:04,145 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:04,145 INFO : Inserting FOLH1

11 May 2020 15:45:04,158 INFO : 27% Done

11 May 2020 15:45:04,385 INFO : 28% Done

11 May 2020 15:45:04,590 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:04,590 INFO : Inserting HIF1A

11 May 2020 15:45:04,594 INFO : 29% Done

11 May 2020 15:45:04,795 INFO : 30% Done

11 May 2020 15:45:04,991 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:04,992 INFO : Inserting HPN

11 May 2020 15:45:04,996 INFO : 31% Done

11 May 2020 15:45:05,209 INFO : 32% Done

11 May 2020 15:45:05,408 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:05,408 INFO : Inserting HSPB1

11 May 2020 15:45:05,412 INFO : 33% Done

11 May 2020 15:45:05,614 INFO : 34% Done

11 May 2020 15:45:05,814 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:05,814 INFO : Inserting HXC6

11 May 2020 15:45:05,819 INFO : 35% Done

11 May 2020 15:45:06,022 INFO : 36% Done

11 May 2020 15:45:06,219 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:06,220 INFO : Inserting KLK11

11 May 2020 15:45:06,426 INFO : 37% Done

11 May 2020 15:45:06,624 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:06,624 INFO : Inserting KLK2

11 May 2020 15:45:06,628 INFO : 38% Done

11 May 2020 15:45:06,829 INFO : 39% Done

11 May 2020 15:45:07,027 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:07,027 INFO : Inserting MMP2

11 May 2020 15:45:07,031 INFO : 40% Done

11 May 2020 15:45:07,230 INFO : 41% Done

11 May 2020 15:45:07,391 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:07,391 INFO : Inserting MMP9

11 May 2020 15:45:07,396 INFO : 42% Done

11 May 2020 15:45:07,585 INFO : 43% Done

11 May 2020 15:45:07,757 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:07,757 INFO : Inserting MUC1

11 May 2020 15:45:07,760 INFO : 44% Done

11 May 2020 15:45:08,112 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:08,112 INFO : 45% Done

11 May 2020 15:45:08,112 INFO : Inserting MUC6

11 May 2020 15:45:08,301 INFO : 46% Done

11 May 2020 15:45:08,483 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:08,484 INFO : Inserting MYC

11 May 2020 15:45:08,487 INFO : 47% Done

11 May 2020 15:45:08,693 INFO : 48% Done

11 May 2020 15:45:08,891 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:08,892 INFO : Inserting MYCN

11 May 2020 15:45:08,896 INFO : 49% Done

11 May 2020 15:45:09,099 INFO : 50% Done

11 May 2020 15:45:09,296 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:09,297 INFO : Inserting MYO6

11 May 2020 15:45:09,301 INFO : 51% Done

11 May 2020 15:45:09,501 INFO : 52% Done

11 May 2020 15:45:09,698 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:09,698 INFO : Inserting NCOA2

11 May 2020 15:45:09,702 INFO : 53% Done

11 May 2020 15:45:09,903 INFO : 54% Done

11 May 2020 15:45:10,099 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:10,099 INFO : Inserting NPY

11 May 2020 15:45:10,103 INFO : 55% Done

11 May 2020 15:45:10,303 INFO : 56% Done

11 May 2020 15:45:10,499 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:10,499 INFO : Inserting O51E2

11 May 2020 15:45:10,665 INFO : 57% Done

11 May 2020 15:45:10,863 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:10,864 INFO : Inserting OSTP

11 May 2020 15:45:10,868 INFO : 58% Done

11 May 2020 15:45:11,065 INFO : 59% Done

11 May 2020 15:45:11,249 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:11,249 INFO : Inserting P53

11 May 2020 15:45:11,253 INFO : 60% Done

11 May 2020 15:45:11,443 INFO : 61% Done

11 May 2020 15:45:11,636 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:11,636 INFO : Inserting PAFA

11 May 2020 15:45:11,640 INFO : 62% Done

11 May 2020 15:45:11,841 INFO : 63% Done

11 May 2020 15:45:12,043 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:12,043 INFO : Inserting PGFRB

11 May 2020 15:45:12,212 INFO : 64% Done

11 May 2020 15:45:12,410 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:12,410 INFO : Inserting PK3CA

11 May 2020 15:45:12,414 INFO : 65% Done

11 May 2020 15:45:12,617 INFO : 66% Done

11 May 2020 15:45:12,819 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:12,819 INFO : Inserting RAF1

11 May 2020 15:45:12,824 INFO : 67% Done

11 May 2020 15:45:13,058 INFO : 68% Done

11 May 2020 15:45:13,224 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:13,224 INFO : Inserting SERPINI1

11 May 2020 15:45:13,228 INFO : 69% Done

11 May 2020 15:45:13,429 INFO : 70% Done

11 May 2020 15:45:13,643 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:13,643 INFO : Inserting SPINK1

11 May 2020 15:45:13,648 INFO : 71% Done

11 May 2020 15:45:13,861 INFO : 72% Done

11 May 2020 15:45:14,107 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:14,107 INFO : Inserting SPRC

11 May 2020 15:45:14,312 INFO : 73% Done

11 May 2020 15:45:14,510 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:14,510 INFO : Inserting TGFB1

11 May 2020 15:45:14,515 INFO : 74% Done

11 May 2020 15:45:14,921 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:14,921 INFO : Inserting TMPS2

11 May 2020 15:45:14,925 INFO : 75% Done

11 May 2020 15:45:15,125 INFO : 76% Done

11 May 2020 15:45:15,324 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:15,324 INFO : Inserting TPM2

11 May 2020 15:45:15,329 INFO : 77% Done

11 May 2020 15:45:16,277 INFO : 78% Done

11 May 2020 15:45:16,508 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:16,508 INFO : Inserting TWST1

11 May 2020 15:45:16,513 INFO : 79% Done

11 May 2020 15:45:16,747 INFO : 80% Done

11 May 2020 15:45:16,984 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:16,985 INFO : Inserting VEGFA

11 May 2020 15:45:16,989 INFO : 81% Done

11 May 2020 15:45:17,204 INFO : 82% Done

11 May 2020 15:45:17,411 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:17,411 INFO : Inserting PSA

11 May 2020 15:45:17,415 INFO : 83% Done

11 May 2020 15:45:17,828 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:17,829 INFO : Inserting ERG_pan

11 May 2020 15:45:17,850 INFO : 84% Done

11 May 2020 15:45:18,061 INFO : 85% Done

11 May 2020 15:45:18,272 INFO : 86% Done

11 May 2020 15:45:18,481 INFO : 87% Done

11 May 2020 15:45:18,697 INFO : 88% Done

11 May 2020 15:45:18,905 INFO : 89% Done

11 May 2020 15:45:19,113 INFO : 90% Done

11 May 2020 15:45:19,320 DEBUG: Total peptides inserted: 7

11 May 2020 15:45:19,320 INFO : Inserting ETV1

11 May 2020 15:45:19,325 INFO : 91% Done

11 May 2020 15:45:19,571 INFO : 92% Done

11 May 2020 15:45:19,781 INFO : 93% Done

11 May 2020 15:45:19,990 DEBUG: Total peptides inserted: 3

11 May 2020 15:45:19,990 INFO : Inserting ERG8

11 May 2020 15:45:19,995 INFO : 94% Done

11 May 2020 15:45:20,203 INFO : 95% Done

11 May 2020 15:45:20,416 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:20,416 INFO : Inserting SMAD4

11 May 2020 15:45:20,664 INFO : 96% Done

11 May 2020 15:45:20,830 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:20,830 INFO : Inserting STAT3

11 May 2020 15:45:20,834 INFO : 97% Done

11 May 2020 15:45:21,082 INFO : 98% Done

11 May 2020 15:45:21,289 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:21,290 INFO : Done parsing Skyline document.

11 May 2020 15:45:21,292 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:45:21,439 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:45:22,802 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:45:23,112 INFO : Cleaning up temp tables

11 May 2020 15:45:23,457 INFO : Completed import of Skyline document from CPDR-FFPE-ID-347_2020-01-28_10-32-58.sky.zip

11 May 2020 15:45:23,458 INFO : 100% Done

11 May 2020 15:45:23,467 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80137/CPDR-FFPE-ID-347_2020-01-28_10-32-58.sky.zip into the system

11 May 2020 15:45:23,468 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80119/CPDR-FFPE-ID-214_2020-01-28_10-24-49/CPDR-FFPE-ID-214.skyd into the system

11 May 2020 15:45:23,469 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80119/CPDR-FFPE-ID-214_2020-01-28_10-24-49/CPDR-FFPE-ID-214.skyd into the system

11 May 2020 15:45:23,469 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80119/CPDR-FFPE-ID-214_2020-01-28_10-24-49.sky.zip into the system

11 May 2020 15:45:23,472 INFO : Starting import from CPDR-FFPE-ID-214_2020-01-28_10-24-49.sky.zip

11 May 2020 15:45:23,478 INFO : Starting to import Skyline document from CPDR-FFPE-ID-214_2020-01-28_10-24-49.sky.zip

11 May 2020 15:45:23,496 INFO : Expanding CPDR-FFPE-ID-214.skyd

11 May 2020 15:45:23,925 INFO : Expanding CPDR-FFPE-ID-214.sky.view

11 May 2020 15:45:23,926 INFO : Expanding CPDR-FFPE-ID-214.sky

11 May 2020 15:45:24,337 INFO : Inserting TFF3

11 May 2020 15:45:24,344 INFO : 1% Done

11 May 2020 15:45:24,542 INFO : 2% Done

11 May 2020 15:45:24,745 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:24,746 INFO : Inserting AKT1

11 May 2020 15:45:24,749 INFO : 3% Done

11 May 2020 15:45:24,916 INFO : 4% Done

11 May 2020 15:45:25,122 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:25,122 INFO : Inserting AMACR

11 May 2020 15:45:25,126 INFO : 5% Done

11 May 2020 15:45:25,330 INFO : 6% Done

11 May 2020 15:45:25,532 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:25,533 INFO : Inserting ANDR

11 May 2020 15:45:25,537 INFO : 7% Done

11 May 2020 15:45:25,742 INFO : 8% Done

11 May 2020 15:45:25,946 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:25,947 INFO : Inserting ANXA2

11 May 2020 15:45:26,195 INFO : 9% Done

11 May 2020 15:45:26,399 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:26,399 INFO : Inserting AURKA

11 May 2020 15:45:26,403 INFO : 10% Done

11 May 2020 15:45:26,612 INFO : 11% Done

11 May 2020 15:45:26,812 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:26,812 INFO : Inserting BRAF

11 May 2020 15:45:26,816 INFO : 12% Done

11 May 2020 15:45:27,018 INFO : 13% Done

11 May 2020 15:45:27,205 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:27,205 INFO : Inserting CAMKK2

11 May 2020 15:45:27,209 INFO : 14% Done

11 May 2020 15:45:27,402 INFO : 15% Done

11 May 2020 15:45:27,592 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:27,592 INFO : Inserting CCND1

11 May 2020 15:45:27,596 INFO : 16% Done

11 May 2020 15:45:27,802 INFO : 17% Done

11 May 2020 15:45:27,963 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:27,963 INFO : Inserting CDN1A

11 May 2020 15:45:28,175 INFO : 18% Done

11 May 2020 15:45:28,388 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:28,388 INFO : Inserting CRISP3

11 May 2020 15:45:28,392 INFO : 19% Done

11 May 2020 15:45:28,616 INFO : 20% Done

11 May 2020 15:45:28,837 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:28,837 INFO : Inserting DCOR

11 May 2020 15:45:28,841 INFO : 21% Done

11 May 2020 15:45:29,113 INFO : 22% Done

11 May 2020 15:45:29,321 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:29,321 INFO : Inserting EGFR

11 May 2020 15:45:29,325 INFO : 23% Done

11 May 2020 15:45:29,534 INFO : 24% Done

11 May 2020 15:45:29,700 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:29,700 INFO : Inserting EZH2

11 May 2020 15:45:29,704 INFO : 25% Done

11 May 2020 15:45:30,116 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:30,117 INFO : Inserting FGFR1

11 May 2020 15:45:30,330 INFO : 26% Done

11 May 2020 15:45:30,540 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:30,541 INFO : Inserting FOLH1

11 May 2020 15:45:30,545 INFO : 27% Done

11 May 2020 15:45:30,786 INFO : 28% Done

11 May 2020 15:45:30,993 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:30,993 INFO : Inserting HIF1A

11 May 2020 15:45:30,997 INFO : 29% Done

11 May 2020 15:45:31,208 INFO : 30% Done

11 May 2020 15:45:31,411 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:31,411 INFO : Inserting HPN

11 May 2020 15:45:31,415 INFO : 31% Done

11 May 2020 15:45:31,650 INFO : 32% Done

11 May 2020 15:45:31,878 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:31,879 INFO : Inserting HSPB1

11 May 2020 15:45:31,883 INFO : 33% Done

11 May 2020 15:45:32,091 INFO : 34% Done

11 May 2020 15:45:32,301 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:32,301 INFO : Inserting HXC6

11 May 2020 15:45:32,305 INFO : 35% Done

11 May 2020 15:45:32,521 INFO : 36% Done

11 May 2020 15:45:32,753 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:32,753 INFO : Inserting KLK11

11 May 2020 15:45:32,973 INFO : 37% Done

11 May 2020 15:45:33,237 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:33,237 INFO : Inserting KLK2

11 May 2020 15:45:33,241 INFO : 38% Done

11 May 2020 15:45:33,449 INFO : 39% Done

11 May 2020 15:45:33,660 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:33,660 INFO : Inserting MMP2

11 May 2020 15:45:33,665 INFO : 40% Done

11 May 2020 15:45:33,874 INFO : 41% Done

11 May 2020 15:45:34,041 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:34,042 INFO : Inserting MMP9

11 May 2020 15:45:34,046 INFO : 42% Done

11 May 2020 15:45:34,263 INFO : 43% Done

11 May 2020 15:45:34,471 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:34,471 INFO : Inserting MUC1

11 May 2020 15:45:34,475 INFO : 44% Done

11 May 2020 15:45:34,698 INFO : 45% Done

11 May 2020 15:45:34,903 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:34,903 INFO : Inserting MUC6

11 May 2020 15:45:35,129 INFO : 46% Done

11 May 2020 15:45:35,349 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:35,349 INFO : Inserting MYC

11 May 2020 15:45:35,353 INFO : 47% Done

11 May 2020 15:45:35,575 INFO : 48% Done

11 May 2020 15:45:35,838 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:35,838 INFO : Inserting MYCN

11 May 2020 15:45:35,842 INFO : 49% Done

11 May 2020 15:45:36,067 INFO : 50% Done

11 May 2020 15:45:36,287 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:36,288 INFO : Inserting MYO6

11 May 2020 15:45:36,292 INFO : 51% Done

11 May 2020 15:45:36,501 INFO : 52% Done

11 May 2020 15:45:36,707 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:36,708 INFO : Inserting NCOA2

11 May 2020 15:45:36,712 INFO : 53% Done

11 May 2020 15:45:36,931 INFO : 54% Done

11 May 2020 15:45:37,137 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:37,137 INFO : Inserting NPY

11 May 2020 15:45:37,141 INFO : 55% Done

11 May 2020 15:45:37,350 INFO : 56% Done

11 May 2020 15:45:37,608 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:37,608 INFO : Inserting O51E2

11 May 2020 15:45:37,794 INFO : 57% Done

11 May 2020 15:45:38,002 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:38,002 INFO : Inserting OSTP

11 May 2020 15:45:38,007 INFO : 58% Done

11 May 2020 15:45:38,225 INFO : 59% Done

11 May 2020 15:45:38,431 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:38,432 INFO : Inserting P53

11 May 2020 15:45:38,436 INFO : 60% Done

11 May 2020 15:45:38,646 INFO : 61% Done

11 May 2020 15:45:38,851 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:38,851 INFO : Inserting PAFA

11 May 2020 15:45:38,855 INFO : 62% Done

11 May 2020 15:45:39,066 INFO : 63% Done

11 May 2020 15:45:39,355 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:39,355 INFO : Inserting PGFRB

11 May 2020 15:45:39,527 INFO : 64% Done

11 May 2020 15:45:39,746 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:39,746 INFO : Inserting PK3CA

11 May 2020 15:45:39,750 INFO : 65% Done

11 May 2020 15:45:39,959 INFO : 66% Done

11 May 2020 15:45:40,166 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:40,167 INFO : Inserting RAF1

11 May 2020 15:45:40,171 INFO : 67% Done

11 May 2020 15:45:40,397 INFO : 68% Done

11 May 2020 15:45:40,562 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:40,562 INFO : Inserting SERPINI1

11 May 2020 15:45:40,566 INFO : 69% Done

11 May 2020 15:45:40,775 INFO : 70% Done

11 May 2020 15:45:41,031 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:41,032 INFO : Inserting SPINK1

11 May 2020 15:45:41,036 INFO : 71% Done

11 May 2020 15:45:41,349 INFO : 72% Done

11 May 2020 15:45:41,606 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:41,606 INFO : Inserting SPRC

11 May 2020 15:45:41,879 INFO : 73% Done

11 May 2020 15:45:42,081 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:42,081 INFO : Inserting TGFB1

11 May 2020 15:45:42,085 INFO : 74% Done

11 May 2020 15:45:42,511 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:42,511 INFO : Inserting TMPS2

11 May 2020 15:45:42,515 INFO : 75% Done

11 May 2020 15:45:42,726 INFO : 76% Done

11 May 2020 15:45:42,949 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:42,950 INFO : Inserting TPM2

11 May 2020 15:45:42,954 INFO : 77% Done

11 May 2020 15:45:43,179 INFO : 78% Done

11 May 2020 15:45:43,398 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:43,398 INFO : Inserting TWST1

11 May 2020 15:45:43,402 INFO : 79% Done

11 May 2020 15:45:43,617 INFO : 80% Done

11 May 2020 15:45:43,824 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:43,824 INFO : Inserting VEGFA

11 May 2020 15:45:43,828 INFO : 81% Done

11 May 2020 15:45:44,036 INFO : 82% Done

11 May 2020 15:45:44,224 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:44,224 INFO : Inserting PSA

11 May 2020 15:45:44,228 INFO : 83% Done

11 May 2020 15:45:44,418 INFO : 84% Done

11 May 2020 15:45:44,607 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:44,608 INFO : Inserting ERG_pan

11 May 2020 15:45:44,810 INFO : 85% Done

11 May 2020 15:45:45,011 INFO : 86% Done

11 May 2020 15:45:45,218 INFO : 87% Done

11 May 2020 15:45:45,430 INFO : 88% Done

11 May 2020 15:45:45,666 INFO : 89% Done

11 May 2020 15:45:45,878 INFO : 90% Done

11 May 2020 15:45:46,082 DEBUG: Total peptides inserted: 7

11 May 2020 15:45:46,082 INFO : Inserting ETV1

11 May 2020 15:45:46,086 INFO : 91% Done

11 May 2020 15:45:46,308 INFO : 92% Done

11 May 2020 15:45:46,534 INFO : 93% Done

11 May 2020 15:45:46,757 DEBUG: Total peptides inserted: 3

11 May 2020 15:45:46,758 INFO : Inserting ERG8

11 May 2020 15:45:46,762 INFO : 94% Done

11 May 2020 15:45:46,990 INFO : 95% Done

11 May 2020 15:45:47,273 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:47,273 INFO : Inserting SMAD4

11 May 2020 15:45:47,502 INFO : 96% Done

11 May 2020 15:45:47,679 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:47,679 INFO : Inserting STAT3

11 May 2020 15:45:47,683 INFO : 97% Done

11 May 2020 15:45:48,061 INFO : 98% Done

11 May 2020 15:45:48,283 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:48,283 INFO : Done parsing Skyline document.

11 May 2020 15:45:48,285 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:45:48,434 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:45:49,562 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:45:49,741 INFO : Cleaning up temp tables

11 May 2020 15:45:50,136 INFO : Completed import of Skyline document from CPDR-FFPE-ID-214_2020-01-28_10-24-49.sky.zip

11 May 2020 15:45:50,138 INFO : 100% Done

11 May 2020 15:45:50,150 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80119/CPDR-FFPE-ID-214_2020-01-28_10-24-49.sky.zip into the system

11 May 2020 15:45:50,150 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80112/CPDR-FFPE-ID-313_2020-01-28_10-20-11/CPDR-FFPE-ID-313.skyd into the system

11 May 2020 15:45:50,151 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80112/CPDR-FFPE-ID-313_2020-01-28_10-20-11/CPDR-FFPE-ID-313.skyd into the system

11 May 2020 15:45:50,152 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80112/CPDR-FFPE-ID-313_2020-01-28_10-20-11.sky.zip into the system

11 May 2020 15:45:50,156 INFO : Starting import from CPDR-FFPE-ID-313_2020-01-28_10-20-11.sky.zip

11 May 2020 15:45:50,164 INFO : Starting to import Skyline document from CPDR-FFPE-ID-313_2020-01-28_10-20-11.sky.zip

11 May 2020 15:45:50,180 INFO : Expanding CPDR-FFPE-ID-313.skyd

11 May 2020 15:45:50,609 INFO : Expanding CPDR-FFPE-ID-313.sky.view

11 May 2020 15:45:50,609 INFO : Expanding CPDR-FFPE-ID-313.sky

11 May 2020 15:45:51,215 INFO : Inserting TFF3

11 May 2020 15:45:51,218 INFO : 1% Done

11 May 2020 15:45:51,306 INFO : 2% Done

11 May 2020 15:45:51,389 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:51,389 INFO : Inserting AKT1

11 May 2020 15:45:51,391 INFO : 3% Done

11 May 2020 15:45:51,459 INFO : 4% Done

11 May 2020 15:45:51,565 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:51,565 INFO : Inserting AMACR

11 May 2020 15:45:51,569 INFO : 5% Done

11 May 2020 15:45:51,781 INFO : 6% Done

11 May 2020 15:45:51,990 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:51,990 INFO : Inserting ANDR

11 May 2020 15:45:51,996 INFO : 7% Done

11 May 2020 15:45:52,418 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:52,419 INFO : Inserting ANXA2

11 May 2020 15:45:52,423 INFO : 8% Done

11 May 2020 15:45:52,648 INFO : 9% Done

11 May 2020 15:45:52,856 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:52,857 INFO : Inserting AURKA

11 May 2020 15:45:52,861 INFO : 10% Done

11 May 2020 15:45:53,071 INFO : 11% Done

11 May 2020 15:45:53,285 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:53,285 INFO : Inserting BRAF

11 May 2020 15:45:53,289 INFO : 12% Done

11 May 2020 15:45:53,509 INFO : 13% Done

11 May 2020 15:45:53,720 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:53,720 INFO : Inserting CAMKK2

11 May 2020 15:45:53,725 INFO : 14% Done

11 May 2020 15:45:53,939 INFO : 15% Done

11 May 2020 15:45:54,155 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:54,155 INFO : Inserting CCND1

11 May 2020 15:45:54,159 INFO : 16% Done

11 May 2020 15:45:54,377 INFO : 17% Done

11 May 2020 15:45:54,568 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:54,568 INFO : Inserting CDN1A

11 May 2020 15:45:54,815 INFO : 18% Done

11 May 2020 15:45:55,071 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:55,071 INFO : Inserting CRISP3

11 May 2020 15:45:55,075 INFO : 19% Done

11 May 2020 15:45:55,307 INFO : 20% Done

11 May 2020 15:45:55,521 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:55,521 INFO : Inserting DCOR

11 May 2020 15:45:55,525 INFO : 21% Done

11 May 2020 15:45:55,737 INFO : 22% Done

11 May 2020 15:45:55,960 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:55,960 INFO : Inserting EGFR

11 May 2020 15:45:55,964 INFO : 23% Done

11 May 2020 15:45:56,152 INFO : 24% Done

11 May 2020 15:45:56,295 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:56,295 INFO : Inserting EZH2

11 May 2020 15:45:56,299 INFO : 25% Done

11 May 2020 15:45:56,663 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:56,663 INFO : Inserting FGFR1

11 May 2020 15:45:56,866 INFO : 26% Done

11 May 2020 15:45:57,058 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:57,058 INFO : Inserting FOLH1

11 May 2020 15:45:57,062 INFO : 27% Done

11 May 2020 15:45:57,279 INFO : 28% Done

11 May 2020 15:45:57,484 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:57,484 INFO : Inserting HIF1A

11 May 2020 15:45:57,489 INFO : 29% Done

11 May 2020 15:45:57,700 INFO : 30% Done

11 May 2020 15:45:57,905 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:57,906 INFO : Inserting HPN

11 May 2020 15:45:57,910 INFO : 31% Done

11 May 2020 15:45:58,121 INFO : 32% Done

11 May 2020 15:45:58,329 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:58,330 INFO : Inserting HSPB1

11 May 2020 15:45:58,334 INFO : 33% Done

11 May 2020 15:45:58,543 INFO : 34% Done

11 May 2020 15:45:58,747 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:58,747 INFO : Inserting HXC6

11 May 2020 15:45:58,752 INFO : 35% Done

11 May 2020 15:45:58,958 INFO : 36% Done

11 May 2020 15:45:59,178 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:59,178 INFO : Inserting KLK11

11 May 2020 15:45:59,182 INFO : 37% Done

11 May 2020 15:45:59,597 DEBUG: Total peptides inserted: 2

11 May 2020 15:45:59,597 INFO : Inserting KLK2

11 May 2020 15:45:59,601 INFO : 38% Done

11 May 2020 15:45:59,811 INFO : 39% Done

11 May 2020 15:46:00,021 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:00,022 INFO : Inserting MMP2

11 May 2020 15:46:00,028 INFO : 40% Done

11 May 2020 15:46:00,245 INFO : 41% Done

11 May 2020 15:46:00,414 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:00,414 INFO : Inserting MMP9

11 May 2020 15:46:00,418 INFO : 42% Done

11 May 2020 15:46:00,635 INFO : 43% Done

11 May 2020 15:46:00,850 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:00,851 INFO : Inserting MUC1

11 May 2020 15:46:00,855 INFO : 44% Done

11 May 2020 15:46:01,090 INFO : 45% Done

11 May 2020 15:46:01,299 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:01,299 INFO : Inserting MUC6

11 May 2020 15:46:01,512 INFO : 46% Done

11 May 2020 15:46:01,741 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:01,741 INFO : Inserting MYC

11 May 2020 15:46:01,746 INFO : 47% Done

11 May 2020 15:46:01,985 INFO : 48% Done

11 May 2020 15:46:02,190 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:02,190 INFO : Inserting MYCN

11 May 2020 15:46:02,194 INFO : 49% Done

11 May 2020 15:46:02,409 INFO : 50% Done

11 May 2020 15:46:02,619 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:02,619 INFO : Inserting MYO6

11 May 2020 15:46:02,623 INFO : 51% Done

11 May 2020 15:46:02,850 INFO : 52% Done

11 May 2020 15:46:03,074 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:03,075 INFO : Inserting NCOA2

11 May 2020 15:46:03,079 INFO : 53% Done

11 May 2020 15:46:03,289 INFO : 54% Done

11 May 2020 15:46:03,496 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:03,496 INFO : Inserting NPY

11 May 2020 15:46:03,500 INFO : 55% Done

11 May 2020 15:46:03,710 INFO : 56% Done

11 May 2020 15:46:03,916 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:03,916 INFO : Inserting O51E2

11 May 2020 15:46:04,093 INFO : 57% Done

11 May 2020 15:46:04,306 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:04,306 INFO : Inserting OSTP

11 May 2020 15:46:04,310 INFO : 58% Done

11 May 2020 15:46:04,522 INFO : 59% Done

11 May 2020 15:46:04,733 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:04,733 INFO : Inserting P53

11 May 2020 15:46:04,737 INFO : 60% Done

11 May 2020 15:46:04,952 INFO : 61% Done

11 May 2020 15:46:05,164 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:05,164 INFO : Inserting PAFA

11 May 2020 15:46:05,168 INFO : 62% Done

11 May 2020 15:46:05,383 INFO : 63% Done

11 May 2020 15:46:05,595 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:05,596 INFO : Inserting PGFRB

11 May 2020 15:46:05,600 INFO : 64% Done

11 May 2020 15:46:06,003 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:06,003 INFO : Inserting PK3CA

11 May 2020 15:46:06,008 INFO : 65% Done

11 May 2020 15:46:06,222 INFO : 66% Done

11 May 2020 15:46:06,465 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:06,465 INFO : Inserting RAF1

11 May 2020 15:46:06,470 INFO : 67% Done

11 May 2020 15:46:06,706 INFO : 68% Done

11 May 2020 15:46:06,873 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:06,873 INFO : Inserting SERPINI1

11 May 2020 15:46:06,878 INFO : 69% Done

11 May 2020 15:46:07,082 INFO : 70% Done

11 May 2020 15:46:07,280 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:07,281 INFO : Inserting SPINK1

11 May 2020 15:46:07,284 INFO : 71% Done

11 May 2020 15:46:07,480 INFO : 72% Done

11 May 2020 15:46:07,695 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:07,695 INFO : Inserting SPRC

11 May 2020 15:46:07,923 INFO : 73% Done

11 May 2020 15:46:08,134 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:08,134 INFO : Inserting TGFB1

11 May 2020 15:46:08,138 INFO : 74% Done

11 May 2020 15:46:08,557 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:08,557 INFO : Inserting TMPS2

11 May 2020 15:46:08,562 INFO : 75% Done

11 May 2020 15:46:08,744 INFO : 76% Done

11 May 2020 15:46:08,926 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:08,927 INFO : Inserting TPM2

11 May 2020 15:46:08,931 INFO : 77% Done

11 May 2020 15:46:09,156 INFO : 78% Done

11 May 2020 15:46:09,374 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:09,375 INFO : Inserting TWST1

11 May 2020 15:46:09,382 INFO : 79% Done

11 May 2020 15:46:09,612 INFO : 80% Done

11 May 2020 15:46:09,790 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:09,790 INFO : Inserting VEGFA

11 May 2020 15:46:09,794 INFO : 81% Done

11 May 2020 15:46:09,974 INFO : 82% Done

11 May 2020 15:46:10,306 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:10,306 INFO : Inserting PSA

11 May 2020 15:46:10,311 INFO : 83% Done

11 May 2020 15:46:10,599 INFO : 84% Done

11 May 2020 15:46:10,837 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:10,838 INFO : Inserting ERG_pan

11 May 2020 15:46:11,098 INFO : 85% Done

11 May 2020 15:46:11,358 INFO : 86% Done

11 May 2020 15:46:11,604 INFO : 87% Done

11 May 2020 15:46:11,892 INFO : 88% Done

11 May 2020 15:46:12,133 INFO : 89% Done

11 May 2020 15:46:12,374 INFO : 90% Done

11 May 2020 15:46:12,613 DEBUG: Total peptides inserted: 7

11 May 2020 15:46:12,613 INFO : Inserting ETV1

11 May 2020 15:46:12,617 INFO : 91% Done

11 May 2020 15:46:12,859 INFO : 92% Done

11 May 2020 15:46:13,103 INFO : 93% Done

11 May 2020 15:46:13,342 DEBUG: Total peptides inserted: 3

11 May 2020 15:46:13,342 INFO : Inserting ERG8

11 May 2020 15:46:13,346 INFO : 94% Done

11 May 2020 15:46:13,589 INFO : 95% Done

11 May 2020 15:46:13,833 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:13,833 INFO : Inserting SMAD4

11 May 2020 15:46:13,837 INFO : 96% Done

11 May 2020 15:46:14,324 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:14,324 INFO : Inserting STAT3

11 May 2020 15:46:14,329 INFO : 97% Done

11 May 2020 15:46:14,571 INFO : 98% Done

11 May 2020 15:46:14,812 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:14,812 INFO : Done parsing Skyline document.

11 May 2020 15:46:14,814 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:46:14,968 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:46:16,047 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:46:16,229 INFO : Cleaning up temp tables

11 May 2020 15:46:16,519 INFO : Completed import of Skyline document from CPDR-FFPE-ID-313_2020-01-28_10-20-11.sky.zip

11 May 2020 15:46:16,520 INFO : 100% Done

11 May 2020 15:46:16,525 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80112/CPDR-FFPE-ID-313_2020-01-28_10-20-11.sky.zip into the system

11 May 2020 15:46:16,526 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80106/CPDR-FFPE-ID-728_seg2_2020-01-28_10-16-32/CPDR-FFPE-ID-728_seg2.skyd into the system

11 May 2020 15:46:16,526 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80106/CPDR-FFPE-ID-728_seg2_2020-01-28_10-16-32/CPDR-FFPE-ID-728_seg2.skyd into the system

11 May 2020 15:46:16,526 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80106/CPDR-FFPE-ID-728_seg2_2020-01-28_10-16-32.sky.zip into the system

11 May 2020 15:46:16,530 INFO : Starting import from CPDR-FFPE-ID-728_seg2_2020-01-28_10-16-32.sky.zip

11 May 2020 15:46:16,539 INFO : Starting to import Skyline document from CPDR-FFPE-ID-728_seg2_2020-01-28_10-16-32.sky.zip

11 May 2020 15:46:16,556 INFO : Expanding CPDR-FFPE-ID-728_seg2.skyd

11 May 2020 15:46:17,066 INFO : Expanding CPDR-FFPE-ID-728_seg2.sky.view

11 May 2020 15:46:17,066 INFO : Expanding CPDR-FFPE-ID-728_seg2.sky

11 May 2020 15:46:17,089 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 15:46:17,092 INFO : 1% Done

11 May 2020 15:46:17,387 INFO : Inserting TFF3

11 May 2020 15:46:17,395 INFO : 2% Done

11 May 2020 15:46:17,685 DEBUG: Total peptides inserted: 1

11 May 2020 15:46:17,685 INFO : Inserting AKT1

11 May 2020 15:46:17,690 INFO : 3% Done

11 May 2020 15:46:17,917 INFO : 4% Done

11 May 2020 15:46:18,140 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:18,140 INFO : Inserting AMACR

11 May 2020 15:46:18,145 INFO : 5% Done

11 May 2020 15:46:18,361 INFO : 6% Done

11 May 2020 15:46:18,596 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:18,596 INFO : Inserting ANDR

11 May 2020 15:46:18,601 INFO : 7% Done

11 May 2020 15:46:18,799 INFO : 8% Done

11 May 2020 15:46:18,985 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:18,985 INFO : Inserting ANXA2

11 May 2020 15:46:18,990 INFO : 10% Done

11 May 2020 15:46:19,244 DEBUG: Total peptides inserted: 1

11 May 2020 15:46:19,245 INFO : Inserting AURKA

11 May 2020 15:46:19,249 INFO : 11% Done

11 May 2020 15:46:19,443 INFO : 12% Done

11 May 2020 15:46:19,751 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:19,751 INFO : Inserting BRAF

11 May 2020 15:46:19,756 INFO : 13% Done

11 May 2020 15:46:20,034 INFO : 14% Done

11 May 2020 15:46:20,247 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:20,247 INFO : Inserting CAMKK2

11 May 2020 15:46:20,252 INFO : 15% Done

11 May 2020 15:46:20,477 DEBUG: Total peptides inserted: 1

11 May 2020 15:46:20,478 INFO : Inserting CCND1

11 May 2020 15:46:20,482 INFO : 16% Done

11 May 2020 15:46:20,662 DEBUG: Total peptides inserted: 1

11 May 2020 15:46:20,662 INFO : Inserting CDN1A

11 May 2020 15:46:20,667 INFO : 17% Done

11 May 2020 15:46:20,854 INFO : 18% Done

11 May 2020 15:46:21,053 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:21,054 INFO : Inserting CRISP3

11 May 2020 15:46:21,058 INFO : 19% Done

11 May 2020 15:46:21,267 INFO : 20% Done

11 May 2020 15:46:21,477 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:21,477 INFO : Inserting DCOR

11 May 2020 15:46:21,482 INFO : 21% Done

11 May 2020 15:46:21,657 INFO : 22% Done

11 May 2020 15:46:21,872 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:21,872 INFO : Inserting EGFR

11 May 2020 15:46:21,877 INFO : 23% Done

11 May 2020 15:46:22,059 DEBUG: Total peptides inserted: 1

11 May 2020 15:46:22,059 INFO : Inserting EZH2

11 May 2020 15:46:22,064 INFO : 24% Done

11 May 2020 15:46:22,260 INFO : 25% Done

11 May 2020 15:46:22,447 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:22,448 INFO : Inserting FGFR1

11 May 2020 15:46:22,647 INFO : 26% Done

11 May 2020 15:46:22,859 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:22,859 INFO : Inserting FOLH1

11 May 2020 15:46:22,864 INFO : 27% Done

11 May 2020 15:46:23,060 DEBUG: Total peptides inserted: 1

11 May 2020 15:46:23,061 INFO : Inserting HIF1A

11 May 2020 15:46:23,066 INFO : 28% Done

11 May 2020 15:46:23,290 INFO : 29% Done

11 May 2020 15:46:23,499 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:23,499 INFO : Inserting HPN

11 May 2020 15:46:23,504 INFO : 30% Done

11 May 2020 15:46:23,722 INFO : 31% Done

11 May 2020 15:46:23,951 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:23,952 INFO : Inserting HSPB1

11 May 2020 15:46:23,956 INFO : 33% Done

11 May 2020 15:46:24,165 INFO : 34% Done

11 May 2020 15:46:24,381 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:24,381 INFO : Inserting HXC6

11 May 2020 15:46:24,386 INFO : 35% Done

11 May 2020 15:46:24,588 INFO : 36% Done

11 May 2020 15:46:24,769 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:24,769 INFO : Inserting KLK11

11 May 2020 15:46:24,774 INFO : 37% Done

11 May 2020 15:46:24,994 INFO : 38% Done

11 May 2020 15:46:25,182 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:25,182 INFO : Inserting KLK2

11 May 2020 15:46:25,187 INFO : 39% Done

11 May 2020 15:46:25,417 INFO : 40% Done

11 May 2020 15:46:25,602 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:25,602 INFO : Inserting MMP2

11 May 2020 15:46:25,607 INFO : 41% Done

11 May 2020 15:46:25,789 INFO : 42% Done

11 May 2020 15:46:25,986 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:25,986 INFO : Inserting MMP9

11 May 2020 15:46:25,991 INFO : 43% Done

11 May 2020 15:46:26,181 DEBUG: Total peptides inserted: 1

11 May 2020 15:46:26,181 INFO : Inserting MUC1

11 May 2020 15:46:26,186 INFO : 44% Done

11 May 2020 15:46:26,379 DEBUG: Total peptides inserted: 1

11 May 2020 15:46:26,380 INFO : Inserting MUC6

11 May 2020 15:46:26,384 INFO : 45% Done

11 May 2020 15:46:26,560 INFO : 46% Done

11 May 2020 15:46:26,735 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:26,736 INFO : Inserting MYC

11 May 2020 15:46:26,740 INFO : 47% Done

11 May 2020 15:46:26,939 INFO : 48% Done

11 May 2020 15:46:27,104 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:27,104 INFO : Inserting MYCN

11 May 2020 15:46:27,108 INFO : 49% Done

11 May 2020 15:46:27,299 INFO : 51% Done

11 May 2020 15:46:27,499 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:27,499 INFO : Inserting MYO6

11 May 2020 15:46:27,504 INFO : 52% Done

11 May 2020 15:46:27,723 INFO : 53% Done

11 May 2020 15:46:27,934 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:27,935 INFO : Inserting NCOA2

11 May 2020 15:46:27,940 INFO : 54% Done

11 May 2020 15:46:28,156 DEBUG: Total peptides inserted: 1

11 May 2020 15:46:28,157 INFO : Inserting NPY

11 May 2020 15:46:28,162 INFO : 55% Done

11 May 2020 15:46:28,382 INFO : 56% Done

11 May 2020 15:46:28,604 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:28,605 INFO : Inserting O51E2

11 May 2020 15:46:28,609 INFO : 57% Done

11 May 2020 15:46:28,862 INFO : 58% Done

11 May 2020 15:46:29,073 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:29,073 INFO : Inserting OSTP

11 May 2020 15:46:29,078 INFO : 59% Done

11 May 2020 15:46:29,293 INFO : 60% Done

11 May 2020 15:46:29,532 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:29,532 INFO : Inserting P53

11 May 2020 15:46:29,537 INFO : 61% Done

11 May 2020 15:46:29,751 INFO : 62% Done

11 May 2020 15:46:29,951 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:29,951 INFO : Inserting PAFA

11 May 2020 15:46:29,956 INFO : 63% Done

11 May 2020 15:46:30,172 INFO : 64% Done

11 May 2020 15:46:30,357 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:30,358 INFO : Inserting PGFRB

11 May 2020 15:46:30,363 INFO : 65% Done

11 May 2020 15:46:30,598 INFO : 66% Done

11 May 2020 15:46:30,829 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:30,829 INFO : Inserting PK3CA

11 May 2020 15:46:30,834 INFO : 67% Done

11 May 2020 15:46:31,042 INFO : 68% Done

11 May 2020 15:46:31,213 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:31,214 INFO : Inserting RAF1

11 May 2020 15:46:31,218 INFO : 69% Done

11 May 2020 15:46:31,402 INFO : 71% Done

11 May 2020 15:46:31,605 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:31,605 INFO : Inserting SERPINI1

11 May 2020 15:46:31,611 INFO : 72% Done

11 May 2020 15:46:31,812 INFO : 73% Done

11 May 2020 15:46:31,986 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:31,986 INFO : Inserting SPINK1

11 May 2020 15:46:31,991 INFO : 74% Done

11 May 2020 15:46:32,177 DEBUG: Total peptides inserted: 1

11 May 2020 15:46:32,177 INFO : Inserting SPRC

11 May 2020 15:46:32,413 DEBUG: Total peptides inserted: 1

11 May 2020 15:46:32,413 INFO : Inserting TGFB1

11 May 2020 15:46:32,418 INFO : 75% Done

11 May 2020 15:46:32,613 DEBUG: Total peptides inserted: 1

11 May 2020 15:46:32,613 INFO : Inserting TMPS2

11 May 2020 15:46:32,618 INFO : 76% Done

11 May 2020 15:46:32,836 INFO : 77% Done

11 May 2020 15:46:33,049 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:33,049 INFO : Inserting TPM2

11 May 2020 15:46:33,054 INFO : 78% Done

11 May 2020 15:46:33,242 INFO : 79% Done

11 May 2020 15:46:33,464 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:33,464 INFO : Inserting TWST1

11 May 2020 15:46:33,469 INFO : 80% Done

11 May 2020 15:46:33,670 INFO : 81% Done

11 May 2020 15:46:33,860 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:33,860 INFO : Inserting VEGFA

11 May 2020 15:46:33,865 INFO : 82% Done

11 May 2020 15:46:34,055 DEBUG: Total peptides inserted: 1

11 May 2020 15:46:34,055 INFO : Inserting PSA

11 May 2020 15:46:34,060 INFO : 84% Done

11 May 2020 15:46:34,277 DEBUG: Total peptides inserted: 1

11 May 2020 15:46:34,277 INFO : Inserting ERG_pan

11 May 2020 15:46:34,282 INFO : 85% Done

11 May 2020 15:46:34,457 INFO : 86% Done

11 May 2020 15:46:34,635 INFO : 87% Done

11 May 2020 15:46:34,978 INFO : 89% Done

11 May 2020 15:46:35,202 INFO : 90% Done

11 May 2020 15:46:35,378 DEBUG: Total peptides inserted: 6

11 May 2020 15:46:35,378 INFO : Inserting ETV1

11 May 2020 15:46:35,383 INFO : 91% Done

11 May 2020 15:46:35,602 INFO : 92% Done

11 May 2020 15:46:35,804 INFO : 93% Done

11 May 2020 15:46:36,023 DEBUG: Total peptides inserted: 3

11 May 2020 15:46:36,023 INFO : Inserting ERG8

11 May 2020 15:46:36,028 INFO : 94% Done

11 May 2020 15:46:36,228 INFO : 95% Done

11 May 2020 15:46:36,430 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:36,430 INFO : Inserting SMAD4

11 May 2020 15:46:36,434 INFO : 96% Done

11 May 2020 15:46:36,621 DEBUG: Total peptides inserted: 1

11 May 2020 15:46:36,622 INFO : Inserting STAT3

11 May 2020 15:46:36,627 INFO : 97% Done

11 May 2020 15:46:36,833 INFO : 98% Done

11 May 2020 15:46:37,028 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:37,028 INFO : Done parsing Skyline document.

11 May 2020 15:46:37,031 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:46:37,166 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:46:38,242 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:46:38,565 INFO : Cleaning up temp tables

11 May 2020 15:46:38,866 INFO : Completed import of Skyline document from CPDR-FFPE-ID-728_seg2_2020-01-28_10-16-32.sky.zip

11 May 2020 15:46:38,867 INFO : 100% Done

11 May 2020 15:46:38,873 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80106/CPDR-FFPE-ID-728_seg2_2020-01-28_10-16-32.sky.zip into the system

11 May 2020 15:46:38,873 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80095/CPDR-FFPE-ID-105_seg2_2020-01-28_10-07-01/CPDR-FFPE-ID-105_seg2.skyd into the system

11 May 2020 15:46:38,874 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80095/CPDR-FFPE-ID-105_seg2_2020-01-28_10-07-01/CPDR-FFPE-ID-105_seg2.skyd into the system

11 May 2020 15:46:38,874 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80095/CPDR-FFPE-ID-105_seg2_2020-01-28_10-07-01.sky.zip into the system

11 May 2020 15:46:38,875 INFO : Starting import from CPDR-FFPE-ID-105_seg2_2020-01-28_10-07-01.sky.zip

11 May 2020 15:46:38,878 INFO : Starting to import Skyline document from CPDR-FFPE-ID-105_seg2_2020-01-28_10-07-01.sky.zip

11 May 2020 15:46:38,887 INFO : Expanding CPDR-FFPE-ID-105_seg2.skyd

11 May 2020 15:46:39,243 INFO : Expanding CPDR-FFPE-ID-105_seg2.sky.view

11 May 2020 15:46:39,243 INFO : Expanding CPDR-FFPE-ID-105_seg2.sky

11 May 2020 15:46:39,296 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 15:46:39,299 INFO : 1% Done

11 May 2020 15:46:39,723 INFO : Inserting TFF3

11 May 2020 15:46:39,728 INFO : 2% Done

11 May 2020 15:46:39,807 INFO : 3% Done

11 May 2020 15:46:39,886 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:39,887 INFO : Inserting AKT1

11 May 2020 15:46:39,976 INFO : 5% Done

11 May 2020 15:46:40,132 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:40,132 INFO : Inserting AMACR

11 May 2020 15:46:40,137 INFO : 6% Done

11 May 2020 15:46:40,370 INFO : 7% Done

11 May 2020 15:46:40,594 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:40,594 INFO : Inserting ANDR

11 May 2020 15:46:40,598 INFO : 8% Done

11 May 2020 15:46:40,805 INFO : 9% Done

11 May 2020 15:46:41,005 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:41,005 INFO : Inserting ANXA2

11 May 2020 15:46:41,010 INFO : 10% Done

11 May 2020 15:46:41,222 INFO : 11% Done

11 May 2020 15:46:41,435 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:41,436 INFO : Inserting AURKA

11 May 2020 15:46:41,440 INFO : 12% Done

11 May 2020 15:46:41,616 INFO : 13% Done

11 May 2020 15:46:41,804 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:41,804 INFO : Inserting BRAF

11 May 2020 15:46:41,808 INFO : 14% Done

11 May 2020 15:46:41,972 INFO : 15% Done

11 May 2020 15:46:42,168 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:42,168 INFO : Inserting CAMKK2

11 May 2020 15:46:42,173 INFO : 16% Done

11 May 2020 15:46:42,389 INFO : 17% Done

11 May 2020 15:46:42,589 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:42,589 INFO : Inserting CCND1

11 May 2020 15:46:42,593 INFO : 18% Done

11 May 2020 15:46:42,765 INFO : 19% Done

11 May 2020 15:46:42,934 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:42,934 INFO : Inserting CDN1A

11 May 2020 15:46:42,939 INFO : 20% Done

11 May 2020 15:46:43,115 INFO : 21% Done

11 May 2020 15:46:43,304 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:43,304 INFO : Inserting CRISP3

11 May 2020 15:46:43,309 INFO : 22% Done

11 May 2020 15:46:43,514 INFO : 23% Done

11 May 2020 15:46:43,753 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:43,754 INFO : Inserting DCOR

11 May 2020 15:46:43,758 INFO : 24% Done

11 May 2020 15:46:43,950 INFO : 25% Done

11 May 2020 15:46:44,128 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:44,128 INFO : Inserting EGFR

11 May 2020 15:46:44,319 DEBUG: Total peptides inserted: 1

11 May 2020 15:46:44,319 INFO : Inserting EZH2

11 May 2020 15:46:44,324 INFO : 26% Done

11 May 2020 15:46:44,521 INFO : 27% Done

11 May 2020 15:46:44,686 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:44,687 INFO : Inserting FGFR1

11 May 2020 15:46:44,691 INFO : 28% Done

11 May 2020 15:46:45,081 INFO : 29% Done

11 May 2020 15:46:45,253 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:45,254 INFO : Inserting FOLH1

11 May 2020 15:46:45,258 INFO : 30% Done

11 May 2020 15:46:45,438 DEBUG: Total peptides inserted: 1

11 May 2020 15:46:45,438 INFO : Inserting HIF1A

11 May 2020 15:46:45,443 INFO : 31% Done

11 May 2020 15:46:45,626 INFO : 32% Done

11 May 2020 15:46:45,788 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:45,788 INFO : Inserting HPN

11 May 2020 15:46:45,793 INFO : 33% Done

11 May 2020 15:46:45,973 INFO : 34% Done

11 May 2020 15:46:46,169 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:46,169 INFO : Inserting HSPB1

11 May 2020 15:46:46,174 INFO : 35% Done

11 May 2020 15:46:46,384 INFO : 37% Done

11 May 2020 15:46:46,622 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:46,622 INFO : Inserting HXC6

11 May 2020 15:46:46,627 INFO : 38% Done

11 May 2020 15:46:47,009 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:47,009 INFO : Inserting KLK11

11 May 2020 15:46:47,014 INFO : 40% Done

11 May 2020 15:46:47,273 INFO : 41% Done

11 May 2020 15:46:47,444 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:47,444 INFO : Inserting KLK2

11 May 2020 15:46:47,449 INFO : 42% Done

11 May 2020 15:46:47,639 INFO : 43% Done

11 May 2020 15:46:47,821 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:47,822 INFO : Inserting MMP2

11 May 2020 15:46:47,826 INFO : 44% Done

11 May 2020 15:46:48,025 INFO : 45% Done

11 May 2020 15:46:48,223 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:48,223 INFO : Inserting MMP9

11 May 2020 15:46:48,228 INFO : 46% Done

11 May 2020 15:46:48,424 DEBUG: Total peptides inserted: 1

11 May 2020 15:46:48,424 INFO : Inserting MUC1

11 May 2020 15:46:48,429 INFO : 47% Done

11 May 2020 15:46:48,621 DEBUG: Total peptides inserted: 1

11 May 2020 15:46:48,621 INFO : Inserting MUC6

11 May 2020 15:46:48,626 INFO : 48% Done

11 May 2020 15:46:48,779 INFO : 49% Done

11 May 2020 15:46:48,960 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:48,960 INFO : Inserting MYC

11 May 2020 15:46:48,964 INFO : 50% Done

11 May 2020 15:46:49,121 INFO : 51% Done

11 May 2020 15:46:49,308 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:49,308 INFO : Inserting MYCN

11 May 2020 15:46:49,312 INFO : 52% Done

11 May 2020 15:46:49,515 INFO : 53% Done

11 May 2020 15:46:49,705 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:49,705 INFO : Inserting MYO6

11 May 2020 15:46:49,710 INFO : 54% Done

11 May 2020 15:46:49,929 INFO : 55% Done

11 May 2020 15:46:50,098 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:50,098 INFO : Inserting NCOA2

11 May 2020 15:46:50,103 INFO : 56% Done

11 May 2020 15:46:50,278 DEBUG: Total peptides inserted: 1

11 May 2020 15:46:50,278 INFO : Inserting NPY

11 May 2020 15:46:50,282 INFO : 57% Done

11 May 2020 15:46:50,488 INFO : 58% Done

11 May 2020 15:46:50,670 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:50,670 INFO : Inserting O51E2

11 May 2020 15:46:50,675 INFO : 59% Done

11 May 2020 15:46:50,880 INFO : 60% Done

11 May 2020 15:46:51,071 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:51,071 INFO : Inserting OSTP

11 May 2020 15:46:51,076 INFO : 61% Done

11 May 2020 15:46:51,251 INFO : 62% Done

11 May 2020 15:46:51,415 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:51,415 INFO : Inserting P53

11 May 2020 15:46:51,419 INFO : 63% Done

11 May 2020 15:46:51,582 INFO : 64% Done

11 May 2020 15:46:51,762 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:51,763 INFO : Inserting PAFA

11 May 2020 15:46:51,767 INFO : 65% Done

11 May 2020 15:46:51,947 INFO : 66% Done

11 May 2020 15:46:52,120 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:52,120 INFO : Inserting PGFRB

11 May 2020 15:46:52,124 INFO : 67% Done

11 May 2020 15:46:52,317 INFO : 68% Done

11 May 2020 15:46:52,499 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:52,499 INFO : Inserting PK3CA

11 May 2020 15:46:52,504 INFO : 69% Done

11 May 2020 15:46:52,691 INFO : 70% Done

11 May 2020 15:46:52,872 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:52,872 INFO : Inserting RAF1

11 May 2020 15:46:52,877 INFO : 71% Done

11 May 2020 15:46:53,056 INFO : 72% Done

11 May 2020 15:46:53,249 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:53,249 INFO : Inserting SERPINI1

11 May 2020 15:46:53,254 INFO : 73% Done

11 May 2020 15:46:53,432 INFO : 74% Done

11 May 2020 15:46:53,600 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:53,600 INFO : Inserting SPINK1

11 May 2020 15:46:53,780 DEBUG: Total peptides inserted: 1

11 May 2020 15:46:53,780 INFO : Inserting SPRC

11 May 2020 15:46:53,785 INFO : 75% Done

11 May 2020 15:46:53,950 DEBUG: Total peptides inserted: 1

11 May 2020 15:46:53,950 INFO : Inserting TGFB1

11 May 2020 15:46:53,955 INFO : 76% Done

11 May 2020 15:46:54,174 DEBUG: Total peptides inserted: 1

11 May 2020 15:46:54,174 INFO : Inserting TMPS2

11 May 2020 15:46:54,179 INFO : 77% Done

11 May 2020 15:46:54,383 INFO : 78% Done

11 May 2020 15:46:54,579 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:54,580 INFO : Inserting TPM2

11 May 2020 15:46:54,584 INFO : 79% Done

11 May 2020 15:46:54,781 INFO : 80% Done

11 May 2020 15:46:54,986 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:54,986 INFO : Inserting TWST1

11 May 2020 15:46:54,991 INFO : 81% Done

11 May 2020 15:46:55,181 INFO : 82% Done

11 May 2020 15:46:55,356 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:55,356 INFO : Inserting VEGFA

11 May 2020 15:46:55,361 INFO : 83% Done

11 May 2020 15:46:55,549 DEBUG: Total peptides inserted: 1

11 May 2020 15:46:55,550 INFO : Inserting PSA

11 May 2020 15:46:55,555 INFO : 84% Done

11 May 2020 15:46:55,757 DEBUG: Total peptides inserted: 1

11 May 2020 15:46:55,758 INFO : Inserting ERG_pan

11 May 2020 15:46:55,762 INFO : 85% Done

11 May 2020 15:46:55,981 INFO : 86% Done

11 May 2020 15:46:56,154 INFO : 87% Done

11 May 2020 15:46:56,322 INFO : 88% Done

11 May 2020 15:46:56,501 INFO : 89% Done

11 May 2020 15:46:56,691 INFO : 90% Done

11 May 2020 15:46:56,858 DEBUG: Total peptides inserted: 6

11 May 2020 15:46:56,859 INFO : Inserting ETV1

11 May 2020 15:46:56,863 INFO : 91% Done

11 May 2020 15:46:57,044 INFO : 92% Done

11 May 2020 15:46:57,221 INFO : 93% Done

11 May 2020 15:46:57,429 DEBUG: Total peptides inserted: 3

11 May 2020 15:46:57,429 INFO : Inserting ERG8

11 May 2020 15:46:57,434 INFO : 94% Done

11 May 2020 15:46:57,638 INFO : 95% Done

11 May 2020 15:46:57,820 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:57,820 INFO : Inserting SMAD4

11 May 2020 15:46:57,825 INFO : 96% Done

11 May 2020 15:46:57,999 DEBUG: Total peptides inserted: 1

11 May 2020 15:46:57,999 INFO : Inserting STAT3

11 May 2020 15:46:58,004 INFO : 97% Done

11 May 2020 15:46:58,269 INFO : 98% Done

11 May 2020 15:46:58,450 DEBUG: Total peptides inserted: 2

11 May 2020 15:46:58,450 INFO : Done parsing Skyline document.

11 May 2020 15:46:58,452 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:46:58,587 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:46:59,640 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:46:59,985 INFO : Cleaning up temp tables

11 May 2020 15:47:00,329 INFO : Completed import of Skyline document from CPDR-FFPE-ID-105_seg2_2020-01-28_10-07-01.sky.zip

11 May 2020 15:47:00,330 INFO : 100% Done

11 May 2020 15:47:00,340 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80095/CPDR-FFPE-ID-105_seg2_2020-01-28_10-07-01.sky.zip into the system

11 May 2020 15:47:00,340 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80110/CPDR-FFPE-ID-393_2020-01-28_10-18-58/CPDR-FFPE-ID-393.skyd into the system

11 May 2020 15:47:00,341 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80110/CPDR-FFPE-ID-393_2020-01-28_10-18-58/CPDR-FFPE-ID-393.skyd into the system

11 May 2020 15:47:00,341 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80110/CPDR-FFPE-ID-393_2020-01-28_10-18-58.sky.zip into the system

11 May 2020 15:47:00,344 INFO : Starting import from CPDR-FFPE-ID-393_2020-01-28_10-18-58.sky.zip

11 May 2020 15:47:00,348 INFO : Starting to import Skyline document from CPDR-FFPE-ID-393_2020-01-28_10-18-58.sky.zip

11 May 2020 15:47:00,356 INFO : Expanding CPDR-FFPE-ID-393.skyd

11 May 2020 15:47:00,548 INFO : Expanding CPDR-FFPE-ID-393.sky.view

11 May 2020 15:47:00,549 INFO : Expanding CPDR-FFPE-ID-393.sky

11 May 2020 15:47:01,231 INFO : Inserting TFF3

11 May 2020 15:47:01,237 INFO : 1% Done

11 May 2020 15:47:01,430 INFO : 2% Done

11 May 2020 15:47:01,624 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:01,625 INFO : Inserting AKT1

11 May 2020 15:47:01,628 INFO : 3% Done

11 May 2020 15:47:01,798 INFO : 4% Done

11 May 2020 15:47:02,023 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:02,024 INFO : Inserting AMACR

11 May 2020 15:47:02,028 INFO : 5% Done

11 May 2020 15:47:02,236 INFO : 6% Done

11 May 2020 15:47:02,437 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:02,437 INFO : Inserting ANDR

11 May 2020 15:47:02,441 INFO : 7% Done

11 May 2020 15:47:02,654 INFO : 8% Done

11 May 2020 15:47:02,865 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:02,865 INFO : Inserting ANXA2

11 May 2020 15:47:03,079 INFO : 9% Done

11 May 2020 15:47:03,284 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:03,284 INFO : Inserting AURKA

11 May 2020 15:47:03,288 INFO : 10% Done

11 May 2020 15:47:03,492 INFO : 11% Done

11 May 2020 15:47:03,693 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:03,693 INFO : Inserting BRAF

11 May 2020 15:47:03,697 INFO : 12% Done

11 May 2020 15:47:03,913 INFO : 13% Done

11 May 2020 15:47:04,114 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:04,114 INFO : Inserting CAMKK2

11 May 2020 15:47:04,118 INFO : 14% Done

11 May 2020 15:47:04,338 INFO : 15% Done

11 May 2020 15:47:04,557 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:04,557 INFO : Inserting CCND1

11 May 2020 15:47:04,561 INFO : 16% Done

11 May 2020 15:47:04,772 INFO : 17% Done

11 May 2020 15:47:04,940 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:04,940 INFO : Inserting CDN1A

11 May 2020 15:47:05,155 INFO : 18% Done

11 May 2020 15:47:05,359 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:05,359 INFO : Inserting CRISP3

11 May 2020 15:47:05,363 INFO : 19% Done

11 May 2020 15:47:05,568 INFO : 20% Done

11 May 2020 15:47:05,773 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:05,774 INFO : Inserting DCOR

11 May 2020 15:47:05,778 INFO : 21% Done

11 May 2020 15:47:05,983 INFO : 22% Done

11 May 2020 15:47:06,184 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:06,184 INFO : Inserting EGFR

11 May 2020 15:47:06,188 INFO : 23% Done

11 May 2020 15:47:06,396 INFO : 24% Done

11 May 2020 15:47:06,557 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:06,557 INFO : Inserting EZH2

11 May 2020 15:47:06,561 INFO : 25% Done

11 May 2020 15:47:06,973 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:06,973 INFO : Inserting FGFR1

11 May 2020 15:47:07,182 INFO : 26% Done

11 May 2020 15:47:07,384 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:07,384 INFO : Inserting FOLH1

11 May 2020 15:47:07,388 INFO : 27% Done

11 May 2020 15:47:07,593 INFO : 28% Done

11 May 2020 15:47:07,794 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:07,795 INFO : Inserting HIF1A

11 May 2020 15:47:07,799 INFO : 29% Done

11 May 2020 15:47:08,003 INFO : 30% Done

11 May 2020 15:47:08,205 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:08,205 INFO : Inserting HPN

11 May 2020 15:47:08,209 INFO : 31% Done

11 May 2020 15:47:08,413 INFO : 32% Done

11 May 2020 15:47:08,617 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:08,618 INFO : Inserting HSPB1

11 May 2020 15:47:08,622 INFO : 33% Done

11 May 2020 15:47:08,837 INFO : 34% Done

11 May 2020 15:47:09,040 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:09,040 INFO : Inserting HXC6

11 May 2020 15:47:09,044 INFO : 35% Done

11 May 2020 15:47:09,253 INFO : 36% Done

11 May 2020 15:47:09,454 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:09,454 INFO : Inserting KLK11

11 May 2020 15:47:09,664 INFO : 37% Done

11 May 2020 15:47:09,867 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:09,867 INFO : Inserting KLK2

11 May 2020 15:47:09,872 INFO : 38% Done

11 May 2020 15:47:10,076 INFO : 39% Done

11 May 2020 15:47:10,278 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:10,278 INFO : Inserting MMP2

11 May 2020 15:47:10,282 INFO : 40% Done

11 May 2020 15:47:10,487 INFO : 41% Done

11 May 2020 15:47:10,663 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:10,663 INFO : Inserting MMP9

11 May 2020 15:47:10,668 INFO : 42% Done

11 May 2020 15:47:10,876 INFO : 43% Done

11 May 2020 15:47:11,081 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:11,081 INFO : Inserting MUC1

11 May 2020 15:47:11,085 INFO : 44% Done

11 May 2020 15:47:11,492 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:11,492 INFO : 45% Done

11 May 2020 15:47:11,493 INFO : Inserting MUC6

11 May 2020 15:47:11,702 INFO : 46% Done

11 May 2020 15:47:11,944 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:11,944 INFO : Inserting MYC

11 May 2020 15:47:11,948 INFO : 47% Done

11 May 2020 15:47:12,159 INFO : 48% Done

11 May 2020 15:47:12,364 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:12,364 INFO : Inserting MYCN

11 May 2020 15:47:12,369 INFO : 49% Done

11 May 2020 15:47:12,578 INFO : 50% Done

11 May 2020 15:47:12,798 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:12,798 INFO : Inserting MYO6

11 May 2020 15:47:12,803 INFO : 51% Done

11 May 2020 15:47:13,020 INFO : 52% Done

11 May 2020 15:47:13,230 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:13,230 INFO : Inserting NCOA2

11 May 2020 15:47:13,234 INFO : 53% Done

11 May 2020 15:47:13,442 INFO : 54% Done

11 May 2020 15:47:13,644 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:13,644 INFO : Inserting NPY

11 May 2020 15:47:13,649 INFO : 55% Done

11 May 2020 15:47:13,874 INFO : 56% Done

11 May 2020 15:47:14,086 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:14,086 INFO : Inserting O51E2

11 May 2020 15:47:14,252 INFO : 57% Done

11 May 2020 15:47:14,456 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:14,456 INFO : Inserting OSTP

11 May 2020 15:47:14,460 INFO : 58% Done

11 May 2020 15:47:14,654 INFO : 59% Done

11 May 2020 15:47:14,840 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:14,840 INFO : Inserting P53

11 May 2020 15:47:14,844 INFO : 60% Done

11 May 2020 15:47:15,035 INFO : 61% Done

11 May 2020 15:47:15,243 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:15,243 INFO : Inserting PAFA

11 May 2020 15:47:15,247 INFO : 62% Done

11 May 2020 15:47:15,453 INFO : 63% Done

11 May 2020 15:47:15,655 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:15,655 INFO : Inserting PGFRB

11 May 2020 15:47:15,836 INFO : 64% Done

11 May 2020 15:47:16,039 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:16,039 INFO : Inserting PK3CA

11 May 2020 15:47:16,043 INFO : 65% Done

11 May 2020 15:47:16,247 INFO : 66% Done

11 May 2020 15:47:16,452 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:16,452 INFO : Inserting RAF1

11 May 2020 15:47:16,456 INFO : 67% Done

11 May 2020 15:47:16,660 INFO : 68% Done

11 May 2020 15:47:16,824 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:16,824 INFO : Inserting SERPINI1

11 May 2020 15:47:16,828 INFO : 69% Done

11 May 2020 15:47:17,039 INFO : 70% Done

11 May 2020 15:47:17,245 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:17,245 INFO : Inserting SPINK1

11 May 2020 15:47:17,250 INFO : 71% Done

11 May 2020 15:47:17,468 INFO : 72% Done

11 May 2020 15:47:17,671 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:17,671 INFO : Inserting SPRC

11 May 2020 15:47:17,881 INFO : 73% Done

11 May 2020 15:47:18,086 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:18,086 INFO : Inserting TGFB1

11 May 2020 15:47:18,090 INFO : 74% Done

11 May 2020 15:47:18,541 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:18,541 INFO : Inserting TMPS2

11 May 2020 15:47:18,545 INFO : 75% Done

11 May 2020 15:47:18,751 INFO : 76% Done

11 May 2020 15:47:18,956 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:18,957 INFO : Inserting TPM2

11 May 2020 15:47:18,961 INFO : 77% Done

11 May 2020 15:47:19,179 INFO : 78% Done

11 May 2020 15:47:19,394 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:19,395 INFO : Inserting TWST1

11 May 2020 15:47:19,399 INFO : 79% Done

11 May 2020 15:47:19,606 INFO : 80% Done

11 May 2020 15:47:19,809 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:19,809 INFO : Inserting VEGFA

11 May 2020 15:47:19,813 INFO : 81% Done

11 May 2020 15:47:20,019 INFO : 82% Done

11 May 2020 15:47:20,220 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:20,220 INFO : Inserting PSA

11 May 2020 15:47:20,225 INFO : 83% Done

11 May 2020 15:47:20,634 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:20,634 INFO : Inserting ERG_pan

11 May 2020 15:47:20,639 INFO : 84% Done

11 May 2020 15:47:20,843 INFO : 85% Done

11 May 2020 15:47:21,052 INFO : 86% Done

11 May 2020 15:47:21,257 INFO : 87% Done

11 May 2020 15:47:21,460 INFO : 88% Done

11 May 2020 15:47:21,665 INFO : 89% Done

11 May 2020 15:47:21,871 INFO : 90% Done

11 May 2020 15:47:22,071 DEBUG: Total peptides inserted: 7

11 May 2020 15:47:22,071 INFO : Inserting ETV1

11 May 2020 15:47:22,075 INFO : 91% Done

11 May 2020 15:47:22,275 INFO : 92% Done

11 May 2020 15:47:22,477 INFO : 93% Done

11 May 2020 15:47:22,714 DEBUG: Total peptides inserted: 3

11 May 2020 15:47:22,714 INFO : Inserting ERG8

11 May 2020 15:47:22,718 INFO : 94% Done

11 May 2020 15:47:22,951 INFO : 95% Done

11 May 2020 15:47:23,182 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:23,182 INFO : Inserting SMAD4

11 May 2020 15:47:23,423 INFO : 96% Done

11 May 2020 15:47:23,609 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:23,609 INFO : Inserting STAT3

11 May 2020 15:47:23,613 INFO : 97% Done

11 May 2020 15:47:23,846 INFO : 98% Done

11 May 2020 15:47:24,075 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:24,075 INFO : Done parsing Skyline document.

11 May 2020 15:47:24,077 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:47:24,240 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:47:25,158 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:47:25,469 INFO : Cleaning up temp tables

11 May 2020 15:47:25,477 INFO : Completed import of Skyline document from CPDR-FFPE-ID-393_2020-01-28_10-18-58.sky.zip

11 May 2020 15:47:25,478 INFO : 100% Done

11 May 2020 15:47:25,486 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80110/CPDR-FFPE-ID-393_2020-01-28_10-18-58.sky.zip into the system

11 May 2020 15:47:25,486 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80105/CPDR-FFPE-ID-620_seg2_2020-01-28_10-16-03/CPDR-FFPE-ID-620_seg2.skyd into the system

11 May 2020 15:47:25,487 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80105/CPDR-FFPE-ID-620_seg2_2020-01-28_10-16-03/CPDR-FFPE-ID-620_seg2.skyd into the system

11 May 2020 15:47:25,487 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80105/CPDR-FFPE-ID-620_seg2_2020-01-28_10-16-03.sky.zip into the system

11 May 2020 15:47:25,490 INFO : Starting import from CPDR-FFPE-ID-620_seg2_2020-01-28_10-16-03.sky.zip

11 May 2020 15:47:25,495 INFO : Starting to import Skyline document from CPDR-FFPE-ID-620_seg2_2020-01-28_10-16-03.sky.zip

11 May 2020 15:47:25,508 INFO : Expanding CPDR-FFPE-ID-620_seg2.skyd

11 May 2020 15:47:25,842 INFO : Expanding CPDR-FFPE-ID-620_seg2.sky.view

11 May 2020 15:47:25,843 INFO : Expanding CPDR-FFPE-ID-620_seg2.sky

11 May 2020 15:47:25,873 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 15:47:25,874 INFO : 1% Done

11 May 2020 15:47:26,149 INFO : Inserting TFF3

11 May 2020 15:47:26,153 INFO : 2% Done

11 May 2020 15:47:26,235 DEBUG: Total peptides inserted: 1

11 May 2020 15:47:26,235 INFO : Inserting AKT1

11 May 2020 15:47:26,237 INFO : 3% Done

11 May 2020 15:47:26,320 INFO : 4% Done

11 May 2020 15:47:26,397 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:26,397 INFO : Inserting AMACR

11 May 2020 15:47:26,399 INFO : 5% Done

11 May 2020 15:47:26,490 INFO : 6% Done

11 May 2020 15:47:26,630 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:26,630 INFO : Inserting ANDR

11 May 2020 15:47:26,644 INFO : 7% Done

11 May 2020 15:47:26,874 INFO : 8% Done

11 May 2020 15:47:27,070 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:27,070 INFO : Inserting ANXA2

11 May 2020 15:47:27,075 INFO : 9% Done

11 May 2020 15:47:27,300 DEBUG: Total peptides inserted: 1

11 May 2020 15:47:27,300 INFO : Inserting AURKA

11 May 2020 15:47:27,304 INFO : 10% Done

11 May 2020 15:47:27,498 INFO : 11% Done

11 May 2020 15:47:27,670 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:27,670 INFO : Inserting BRAF

11 May 2020 15:47:27,675 INFO : 12% Done

11 May 2020 15:47:27,861 INFO : 13% Done

11 May 2020 15:47:28,077 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:28,077 INFO : Inserting CAMKK2

11 May 2020 15:47:28,082 INFO : 15% Done

11 May 2020 15:47:28,305 DEBUG: Total peptides inserted: 1

11 May 2020 15:47:28,305 INFO : Inserting CCND1

11 May 2020 15:47:28,309 INFO : 16% Done

11 May 2020 15:47:28,501 DEBUG: Total peptides inserted: 1

11 May 2020 15:47:28,502 INFO : Inserting CDN1A

11 May 2020 15:47:28,506 INFO : 17% Done

11 May 2020 15:47:28,695 INFO : 18% Done

11 May 2020 15:47:28,900 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:28,901 INFO : Inserting CRISP3

11 May 2020 15:47:28,905 INFO : 19% Done

11 May 2020 15:47:29,108 INFO : 20% Done

11 May 2020 15:47:29,316 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:29,316 INFO : Inserting DCOR

11 May 2020 15:47:29,321 INFO : 21% Done

11 May 2020 15:47:29,528 INFO : 22% Done

11 May 2020 15:47:29,718 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:29,718 INFO : Inserting EGFR

11 May 2020 15:47:29,723 INFO : 23% Done

11 May 2020 15:47:29,935 DEBUG: Total peptides inserted: 1

11 May 2020 15:47:29,935 INFO : Inserting EZH2

11 May 2020 15:47:29,940 INFO : 24% Done

11 May 2020 15:47:30,124 INFO : 25% Done

11 May 2020 15:47:30,348 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:30,348 INFO : Inserting FGFR1

11 May 2020 15:47:30,562 INFO : 26% Done

11 May 2020 15:47:30,752 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:30,752 INFO : Inserting FOLH1

11 May 2020 15:47:30,757 INFO : 27% Done

11 May 2020 15:47:30,950 DEBUG: Total peptides inserted: 1

11 May 2020 15:47:30,950 INFO : Inserting HIF1A

11 May 2020 15:47:30,954 INFO : 28% Done

11 May 2020 15:47:31,143 INFO : 29% Done

11 May 2020 15:47:31,342 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:31,342 INFO : Inserting HPN

11 May 2020 15:47:31,346 INFO : 30% Done

11 May 2020 15:47:31,541 INFO : 31% Done

11 May 2020 15:47:31,719 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:31,720 INFO : Inserting HSPB1

11 May 2020 15:47:31,724 INFO : 32% Done

11 May 2020 15:47:31,942 INFO : 34% Done

11 May 2020 15:47:32,139 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:32,140 INFO : Inserting HXC6

11 May 2020 15:47:32,144 INFO : 35% Done

11 May 2020 15:47:32,317 INFO : 36% Done

11 May 2020 15:47:32,482 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:32,483 INFO : Inserting KLK11

11 May 2020 15:47:32,487 INFO : 37% Done

11 May 2020 15:47:32,683 INFO : 38% Done

11 May 2020 15:47:32,855 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:32,855 INFO : Inserting KLK2

11 May 2020 15:47:32,859 INFO : 39% Done

11 May 2020 15:47:33,062 INFO : 40% Done

11 May 2020 15:47:33,243 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:33,243 INFO : Inserting MMP2

11 May 2020 15:47:33,247 INFO : 41% Done

11 May 2020 15:47:33,415 INFO : 42% Done

11 May 2020 15:47:33,610 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:33,610 INFO : Inserting MMP9

11 May 2020 15:47:33,615 INFO : 43% Done

11 May 2020 15:47:33,799 DEBUG: Total peptides inserted: 1

11 May 2020 15:47:33,799 INFO : 44% Done

11 May 2020 15:47:33,800 INFO : Inserting MUC1

11 May 2020 15:47:33,804 INFO : 45% Done

11 May 2020 15:47:33,984 DEBUG: Total peptides inserted: 1

11 May 2020 15:47:33,984 INFO : Inserting MUC6

11 May 2020 15:47:33,988 INFO : 46% Done

11 May 2020 15:47:34,180 INFO : 47% Done

11 May 2020 15:47:34,360 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:34,360 INFO : Inserting MYC

11 May 2020 15:47:34,364 INFO : 48% Done

11 May 2020 15:47:34,532 INFO : 49% Done

11 May 2020 15:47:34,700 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:34,701 INFO : Inserting MYCN

11 May 2020 15:47:34,705 INFO : 50% Done

11 May 2020 15:47:34,869 INFO : 51% Done

11 May 2020 15:47:35,055 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:35,055 INFO : Inserting MYO6

11 May 2020 15:47:35,060 INFO : 52% Done

11 May 2020 15:47:35,261 INFO : 53% Done

11 May 2020 15:47:35,449 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:35,449 INFO : Inserting NCOA2

11 May 2020 15:47:35,453 INFO : 54% Done

11 May 2020 15:47:35,634 DEBUG: Total peptides inserted: 1

11 May 2020 15:47:35,634 INFO : Inserting NPY

11 May 2020 15:47:35,639 INFO : 55% Done

11 May 2020 15:47:35,826 INFO : 56% Done

11 May 2020 15:47:36,014 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:36,014 INFO : Inserting O51E2

11 May 2020 15:47:36,019 INFO : 57% Done

11 May 2020 15:47:36,181 INFO : 58% Done

11 May 2020 15:47:36,350 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:36,350 INFO : Inserting OSTP

11 May 2020 15:47:36,354 INFO : 59% Done

11 May 2020 15:47:36,540 INFO : 60% Done

11 May 2020 15:47:36,710 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:36,711 INFO : Inserting P53

11 May 2020 15:47:36,715 INFO : 61% Done

11 May 2020 15:47:36,876 INFO : 62% Done

11 May 2020 15:47:37,044 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:37,044 INFO : Inserting PAFA

11 May 2020 15:47:37,048 INFO : 63% Done

11 May 2020 15:47:37,212 INFO : 64% Done

11 May 2020 15:47:37,372 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:37,372 INFO : Inserting PGFRB

11 May 2020 15:47:37,376 INFO : 65% Done

11 May 2020 15:47:37,549 INFO : 66% Done

11 May 2020 15:47:37,748 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:37,749 INFO : Inserting PK3CA

11 May 2020 15:47:37,753 INFO : 67% Done

11 May 2020 15:47:37,929 INFO : 68% Done

11 May 2020 15:47:38,109 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:38,109 INFO : Inserting RAF1

11 May 2020 15:47:38,114 INFO : 69% Done

11 May 2020 15:47:38,308 INFO : 71% Done

11 May 2020 15:47:38,507 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:38,507 INFO : Inserting SERPINI1

11 May 2020 15:47:38,512 INFO : 72% Done

11 May 2020 15:47:38,687 INFO : 73% Done

11 May 2020 15:47:38,847 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:38,848 INFO : Inserting SPINK1

11 May 2020 15:47:38,852 INFO : 74% Done

11 May 2020 15:47:39,018 DEBUG: Total peptides inserted: 1

11 May 2020 15:47:39,018 INFO : Inserting SPRC

11 May 2020 15:47:39,193 DEBUG: Total peptides inserted: 1

11 May 2020 15:47:39,193 INFO : Inserting TGFB1

11 May 2020 15:47:39,198 INFO : 75% Done

11 May 2020 15:47:39,394 DEBUG: Total peptides inserted: 1

11 May 2020 15:47:39,395 INFO : Inserting TMPS2

11 May 2020 15:47:39,399 INFO : 76% Done

11 May 2020 15:47:39,599 INFO : 77% Done

11 May 2020 15:47:39,779 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:39,779 INFO : Inserting TPM2

11 May 2020 15:47:39,783 INFO : 78% Done

11 May 2020 15:47:39,982 INFO : 79% Done

11 May 2020 15:47:40,208 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:40,209 INFO : Inserting TWST1

11 May 2020 15:47:40,213 INFO : 80% Done

11 May 2020 15:47:40,391 INFO : 81% Done

11 May 2020 15:47:40,563 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:40,563 INFO : Inserting VEGFA

11 May 2020 15:47:40,567 INFO : 82% Done

11 May 2020 15:47:40,740 DEBUG: Total peptides inserted: 1

11 May 2020 15:47:40,740 INFO : Inserting PSA

11 May 2020 15:47:40,745 INFO : 83% Done

11 May 2020 15:47:40,964 DEBUG: Total peptides inserted: 1

11 May 2020 15:47:40,964 INFO : Inserting ERG_pan

11 May 2020 15:47:40,968 INFO : 84% Done

11 May 2020 15:47:41,125 INFO : 85% Done

11 May 2020 15:47:41,307 INFO : 86% Done

11 May 2020 15:47:41,469 INFO : 87% Done

11 May 2020 15:47:41,654 INFO : 88% Done

11 May 2020 15:47:41,848 INFO : 90% Done

11 May 2020 15:47:42,019 DEBUG: Total peptides inserted: 6

11 May 2020 15:47:42,019 INFO : Inserting ETV1

11 May 2020 15:47:42,023 INFO : 91% Done

11 May 2020 15:47:42,214 INFO : 92% Done

11 May 2020 15:47:42,402 INFO : 93% Done

11 May 2020 15:47:42,594 DEBUG: Total peptides inserted: 3

11 May 2020 15:47:42,594 INFO : Inserting ERG8

11 May 2020 15:47:42,598 INFO : 94% Done

11 May 2020 15:47:42,766 INFO : 95% Done

11 May 2020 15:47:42,957 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:42,958 INFO : Inserting SMAD4

11 May 2020 15:47:42,962 INFO : 96% Done

11 May 2020 15:47:43,145 DEBUG: Total peptides inserted: 1

11 May 2020 15:47:43,145 INFO : Inserting STAT3

11 May 2020 15:47:43,150 INFO : 97% Done

11 May 2020 15:47:43,325 INFO : 98% Done

11 May 2020 15:47:43,511 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:43,511 INFO : Done parsing Skyline document.

11 May 2020 15:47:43,513 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:47:43,643 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:47:44,632 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:47:44,969 INFO : Cleaning up temp tables

11 May 2020 15:47:45,374 INFO : Completed import of Skyline document from CPDR-FFPE-ID-620_seg2_2020-01-28_10-16-03.sky.zip

11 May 2020 15:47:45,375 INFO : 100% Done

11 May 2020 15:47:45,381 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80105/CPDR-FFPE-ID-620_seg2_2020-01-28_10-16-03.sky.zip into the system

11 May 2020 15:47:45,381 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80102/CPDR-FFPE-ID-362_seg2_2020-01-28_10-10-52/CPDR-FFPE-ID-362_seg2.skyd into the system

11 May 2020 15:47:45,382 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80102/CPDR-FFPE-ID-362_seg2_2020-01-28_10-10-52/CPDR-FFPE-ID-362_seg2.skyd into the system

11 May 2020 15:47:45,382 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80102/CPDR-FFPE-ID-362_seg2_2020-01-28_10-10-52.sky.zip into the system

11 May 2020 15:47:45,383 INFO : Starting import from CPDR-FFPE-ID-362_seg2_2020-01-28_10-10-52.sky.zip

11 May 2020 15:47:45,387 INFO : Starting to import Skyline document from CPDR-FFPE-ID-362_seg2_2020-01-28_10-10-52.sky.zip

11 May 2020 15:47:45,394 INFO : Expanding CPDR-FFPE-ID-362_seg2.skyd

11 May 2020 15:47:45,738 INFO : Expanding CPDR-FFPE-ID-362_seg2.sky.view

11 May 2020 15:47:45,739 INFO : Expanding CPDR-FFPE-ID-362_seg2.sky

11 May 2020 15:47:45,787 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 15:47:45,790 INFO : 1% Done

11 May 2020 15:47:46,291 INFO : Inserting TFF3

11 May 2020 15:47:46,295 INFO : 2% Done

11 May 2020 15:47:46,373 DEBUG: Total peptides inserted: 1

11 May 2020 15:47:46,374 INFO : Inserting AKT1

11 May 2020 15:47:46,375 INFO : 3% Done

11 May 2020 15:47:46,497 INFO : 4% Done

11 May 2020 15:47:46,679 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:46,680 INFO : Inserting AMACR

11 May 2020 15:47:46,685 INFO : 5% Done

11 May 2020 15:47:46,916 INFO : 6% Done

11 May 2020 15:47:47,129 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:47,130 INFO : Inserting ANDR

11 May 2020 15:47:47,134 INFO : 7% Done

11 May 2020 15:47:47,315 INFO : 8% Done

11 May 2020 15:47:47,508 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:47,508 INFO : Inserting ANXA2

11 May 2020 15:47:47,514 INFO : 10% Done

11 May 2020 15:47:47,727 DEBUG: Total peptides inserted: 1

11 May 2020 15:47:47,727 INFO : Inserting AURKA

11 May 2020 15:47:47,733 INFO : 11% Done

11 May 2020 15:47:47,921 INFO : 12% Done

11 May 2020 15:47:48,103 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:48,103 INFO : Inserting BRAF

11 May 2020 15:47:48,107 INFO : 13% Done

11 May 2020 15:47:48,271 INFO : 14% Done

11 May 2020 15:47:48,454 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:48,454 INFO : Inserting CAMKK2

11 May 2020 15:47:48,458 INFO : 15% Done

11 May 2020 15:47:48,649 DEBUG: Total peptides inserted: 1

11 May 2020 15:47:48,650 INFO : Inserting CCND1

11 May 2020 15:47:48,654 INFO : 16% Done

11 May 2020 15:47:48,818 DEBUG: Total peptides inserted: 1

11 May 2020 15:47:48,818 INFO : Inserting CDN1A

11 May 2020 15:47:48,822 INFO : 17% Done

11 May 2020 15:47:48,984 INFO : 18% Done

11 May 2020 15:47:49,162 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:49,162 INFO : Inserting CRISP3

11 May 2020 15:47:49,166 INFO : 19% Done

11 May 2020 15:47:49,364 INFO : 20% Done

11 May 2020 15:47:49,548 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:49,548 INFO : Inserting DCOR

11 May 2020 15:47:49,553 INFO : 21% Done

11 May 2020 15:47:49,727 INFO : 22% Done

11 May 2020 15:47:49,900 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:49,900 INFO : Inserting EGFR

11 May 2020 15:47:49,904 INFO : 23% Done

11 May 2020 15:47:50,090 DEBUG: Total peptides inserted: 1

11 May 2020 15:47:50,090 INFO : Inserting EZH2

11 May 2020 15:47:50,094 INFO : 24% Done

11 May 2020 15:47:50,274 INFO : 25% Done

11 May 2020 15:47:50,455 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:50,455 INFO : Inserting FGFR1

11 May 2020 15:47:50,648 INFO : 26% Done

11 May 2020 15:47:50,800 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:50,800 INFO : Inserting FOLH1

11 May 2020 15:47:50,805 INFO : 27% Done

11 May 2020 15:47:50,994 DEBUG: Total peptides inserted: 1

11 May 2020 15:47:50,994 INFO : Inserting HIF1A

11 May 2020 15:47:50,998 INFO : 29% Done

11 May 2020 15:47:51,355 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:51,355 INFO : 30% Done

11 May 2020 15:47:51,355 INFO : Inserting HPN

11 May 2020 15:47:51,359 INFO : 31% Done

11 May 2020 15:47:51,597 INFO : 32% Done

11 May 2020 15:47:51,781 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:51,781 INFO : Inserting HSPB1

11 May 2020 15:47:51,786 INFO : 33% Done

11 May 2020 15:47:51,999 INFO : 34% Done

11 May 2020 15:47:52,206 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:52,207 INFO : Inserting HXC6

11 May 2020 15:47:52,211 INFO : 35% Done

11 May 2020 15:47:52,369 INFO : 36% Done

11 May 2020 15:47:52,532 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:52,532 INFO : Inserting KLK11

11 May 2020 15:47:52,537 INFO : 37% Done

11 May 2020 15:47:52,756 INFO : 39% Done

11 May 2020 15:47:52,932 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:52,932 INFO : Inserting KLK2

11 May 2020 15:47:52,937 INFO : 40% Done

11 May 2020 15:47:53,120 INFO : 41% Done

11 May 2020 15:47:53,274 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:53,274 INFO : Inserting MMP2

11 May 2020 15:47:53,279 INFO : 42% Done

11 May 2020 15:47:53,484 INFO : 43% Done

11 May 2020 15:47:53,669 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:53,669 INFO : Inserting MMP9

11 May 2020 15:47:53,674 INFO : 44% Done

11 May 2020 15:47:53,917 DEBUG: Total peptides inserted: 1

11 May 2020 15:47:53,918 INFO : Inserting MUC1

11 May 2020 15:47:53,922 INFO : 45% Done

11 May 2020 15:47:54,105 DEBUG: Total peptides inserted: 1

11 May 2020 15:47:54,105 INFO : Inserting MUC6

11 May 2020 15:47:54,109 INFO : 46% Done

11 May 2020 15:47:54,285 INFO : 47% Done

11 May 2020 15:47:54,471 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:54,471 INFO : Inserting MYC

11 May 2020 15:47:54,475 INFO : 48% Done

11 May 2020 15:47:54,639 INFO : 49% Done

11 May 2020 15:47:54,801 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:54,801 INFO : Inserting MYCN

11 May 2020 15:47:54,805 INFO : 50% Done

11 May 2020 15:47:54,965 INFO : 51% Done

11 May 2020 15:47:55,192 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:55,192 INFO : Inserting MYO6

11 May 2020 15:47:55,197 INFO : 52% Done

11 May 2020 15:47:55,402 INFO : 53% Done

11 May 2020 15:47:55,603 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:55,603 INFO : Inserting NCOA2

11 May 2020 15:47:55,608 INFO : 54% Done

11 May 2020 15:47:55,813 DEBUG: Total peptides inserted: 1

11 May 2020 15:47:55,814 INFO : Inserting NPY

11 May 2020 15:47:55,818 INFO : 55% Done

11 May 2020 15:47:56,004 INFO : 56% Done

11 May 2020 15:47:56,211 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:56,212 INFO : Inserting O51E2

11 May 2020 15:47:56,216 INFO : 57% Done

11 May 2020 15:47:56,424 INFO : 58% Done

11 May 2020 15:47:56,613 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:56,613 INFO : Inserting OSTP

11 May 2020 15:47:56,618 INFO : 59% Done

11 May 2020 15:47:56,804 INFO : 60% Done

11 May 2020 15:47:56,987 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:56,987 INFO : Inserting P53

11 May 2020 15:47:56,991 INFO : 61% Done

11 May 2020 15:47:57,196 INFO : 62% Done

11 May 2020 15:47:57,383 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:57,383 INFO : Inserting PAFA

11 May 2020 15:47:57,388 INFO : 63% Done

11 May 2020 15:47:57,587 INFO : 64% Done

11 May 2020 15:47:57,770 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:57,770 INFO : Inserting PGFRB

11 May 2020 15:47:57,774 INFO : 65% Done

11 May 2020 15:47:57,961 INFO : 66% Done

11 May 2020 15:47:58,172 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:58,172 INFO : Inserting PK3CA

11 May 2020 15:47:58,177 INFO : 67% Done

11 May 2020 15:47:58,396 INFO : 69% Done

11 May 2020 15:47:58,592 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:58,592 INFO : Inserting RAF1

11 May 2020 15:47:58,785 INFO : 71% Done

11 May 2020 15:47:59,009 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:59,010 INFO : Inserting SERPINI1

11 May 2020 15:47:59,015 INFO : 72% Done

11 May 2020 15:47:59,182 INFO : 73% Done

11 May 2020 15:47:59,337 DEBUG: Total peptides inserted: 2

11 May 2020 15:47:59,337 INFO : Inserting SPINK1

11 May 2020 15:47:59,341 INFO : 74% Done

11 May 2020 15:47:59,522 DEBUG: Total peptides inserted: 1

11 May 2020 15:47:59,522 INFO : Inserting SPRC

11 May 2020 15:47:59,700 DEBUG: Total peptides inserted: 1

11 May 2020 15:47:59,700 INFO : Inserting TGFB1

11 May 2020 15:47:59,704 INFO : 75% Done

11 May 2020 15:47:59,904 DEBUG: Total peptides inserted: 1

11 May 2020 15:47:59,904 INFO : Inserting TMPS2

11 May 2020 15:47:59,908 INFO : 76% Done

11 May 2020 15:48:00,116 INFO : 77% Done

11 May 2020 15:48:00,308 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:00,308 INFO : Inserting TPM2

11 May 2020 15:48:00,313 INFO : 78% Done

11 May 2020 15:48:00,549 INFO : 79% Done

11 May 2020 15:48:00,785 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:00,785 INFO : Inserting TWST1

11 May 2020 15:48:00,790 INFO : 80% Done

11 May 2020 15:48:00,988 INFO : 81% Done

11 May 2020 15:48:01,178 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:01,178 INFO : Inserting VEGFA

11 May 2020 15:48:01,183 INFO : 82% Done

11 May 2020 15:48:01,366 DEBUG: Total peptides inserted: 1

11 May 2020 15:48:01,366 INFO : Inserting PSA

11 May 2020 15:48:01,371 INFO : 83% Done

11 May 2020 15:48:01,655 DEBUG: Total peptides inserted: 1

11 May 2020 15:48:01,655 INFO : Inserting ERG_pan

11 May 2020 15:48:01,659 INFO : 85% Done

11 May 2020 15:48:01,847 INFO : 86% Done

11 May 2020 15:48:02,057 INFO : 87% Done

11 May 2020 15:48:02,238 INFO : 88% Done

11 May 2020 15:48:02,457 INFO : 89% Done

11 May 2020 15:48:02,656 INFO : 90% Done

11 May 2020 15:48:02,851 DEBUG: Total peptides inserted: 6

11 May 2020 15:48:02,851 INFO : Inserting ETV1

11 May 2020 15:48:02,855 INFO : 91% Done

11 May 2020 15:48:03,067 INFO : 92% Done

11 May 2020 15:48:03,262 INFO : 93% Done

11 May 2020 15:48:03,468 DEBUG: Total peptides inserted: 3

11 May 2020 15:48:03,469 INFO : Inserting ERG8

11 May 2020 15:48:03,473 INFO : 94% Done

11 May 2020 15:48:03,665 INFO : 95% Done

11 May 2020 15:48:03,892 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:03,892 INFO : Inserting SMAD4

11 May 2020 15:48:03,896 INFO : 96% Done

11 May 2020 15:48:04,099 DEBUG: Total peptides inserted: 1

11 May 2020 15:48:04,099 INFO : Inserting STAT3

11 May 2020 15:48:04,104 INFO : 97% Done

11 May 2020 15:48:04,410 INFO : 98% Done

11 May 2020 15:48:04,613 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:04,613 INFO : Done parsing Skyline document.

11 May 2020 15:48:04,616 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:48:04,745 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:48:05,602 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:48:05,940 INFO : Cleaning up temp tables

11 May 2020 15:48:05,943 INFO : Completed import of Skyline document from CPDR-FFPE-ID-362_seg2_2020-01-28_10-10-52.sky.zip

11 May 2020 15:48:05,962 INFO : 100% Done

11 May 2020 15:48:05,973 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80102/CPDR-FFPE-ID-362_seg2_2020-01-28_10-10-52.sky.zip into the system

11 May 2020 15:48:05,973 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80098/CPDR-FFPE-ID-159_seg2_2020-01-28_10-08-47/CPDR-FFPE-ID-159_seg2.skyd into the system

11 May 2020 15:48:05,975 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80098/CPDR-FFPE-ID-159_seg2_2020-01-28_10-08-47/CPDR-FFPE-ID-159_seg2.skyd into the system

11 May 2020 15:48:05,975 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80098/CPDR-FFPE-ID-159_seg2_2020-01-28_10-08-47.sky.zip into the system

11 May 2020 15:48:05,978 INFO : Starting import from CPDR-FFPE-ID-159_seg2_2020-01-28_10-08-47.sky.zip

11 May 2020 15:48:05,985 INFO : Starting to import Skyline document from CPDR-FFPE-ID-159_seg2_2020-01-28_10-08-47.sky.zip

11 May 2020 15:48:06,002 INFO : Expanding CPDR-FFPE-ID-159_seg2.skyd

11 May 2020 15:48:06,499 INFO : Expanding CPDR-FFPE-ID-159_seg2.sky.view

11 May 2020 15:48:06,500 INFO : Expanding CPDR-FFPE-ID-159_seg2.sky

11 May 2020 15:48:06,534 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 15:48:06,535 INFO : 1% Done

11 May 2020 15:48:06,761 INFO : Inserting TFF3

11 May 2020 15:48:06,765 INFO : 2% Done

11 May 2020 15:48:06,840 DEBUG: Total peptides inserted: 1

11 May 2020 15:48:06,840 INFO : Inserting AKT1

11 May 2020 15:48:06,842 INFO : 3% Done

11 May 2020 15:48:06,918 INFO : 4% Done

11 May 2020 15:48:07,000 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:07,000 INFO : Inserting AMACR

11 May 2020 15:48:07,002 INFO : 5% Done

11 May 2020 15:48:07,164 INFO : 6% Done

11 May 2020 15:48:07,353 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:07,353 INFO : Inserting ANDR

11 May 2020 15:48:07,358 INFO : 7% Done

11 May 2020 15:48:07,541 INFO : 8% Done

11 May 2020 15:48:07,736 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:07,736 INFO : Inserting ANXA2

11 May 2020 15:48:07,741 INFO : 10% Done

11 May 2020 15:48:07,945 DEBUG: Total peptides inserted: 1

11 May 2020 15:48:07,945 INFO : Inserting AURKA

11 May 2020 15:48:07,949 INFO : 11% Done

11 May 2020 15:48:08,129 INFO : 12% Done

11 May 2020 15:48:08,332 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:08,333 INFO : Inserting BRAF

11 May 2020 15:48:08,338 INFO : 13% Done

11 May 2020 15:48:08,522 INFO : 14% Done

11 May 2020 15:48:08,727 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:08,727 INFO : Inserting CAMKK2

11 May 2020 15:48:08,732 INFO : 15% Done

11 May 2020 15:48:08,964 DEBUG: Total peptides inserted: 1

11 May 2020 15:48:08,964 INFO : Inserting CCND1

11 May 2020 15:48:08,969 INFO : 16% Done

11 May 2020 15:48:09,161 DEBUG: Total peptides inserted: 1

11 May 2020 15:48:09,162 INFO : Inserting CDN1A

11 May 2020 15:48:09,167 INFO : 17% Done

11 May 2020 15:48:09,370 INFO : 18% Done

11 May 2020 15:48:09,564 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:09,565 INFO : Inserting CRISP3

11 May 2020 15:48:09,569 INFO : 19% Done

11 May 2020 15:48:09,782 INFO : 20% Done

11 May 2020 15:48:09,977 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:09,977 INFO : Inserting DCOR

11 May 2020 15:48:09,982 INFO : 21% Done

11 May 2020 15:48:10,154 INFO : 22% Done

11 May 2020 15:48:10,353 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:10,353 INFO : Inserting EGFR

11 May 2020 15:48:10,358 INFO : 23% Done

11 May 2020 15:48:10,556 DEBUG: Total peptides inserted: 1

11 May 2020 15:48:10,556 INFO : Inserting EZH2

11 May 2020 15:48:10,561 INFO : 24% Done

11 May 2020 15:48:10,759 INFO : 25% Done

11 May 2020 15:48:10,935 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:10,935 INFO : Inserting FGFR1

11 May 2020 15:48:11,141 INFO : 26% Done

11 May 2020 15:48:11,331 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:11,331 INFO : Inserting FOLH1

11 May 2020 15:48:11,336 INFO : 27% Done

11 May 2020 15:48:11,560 DEBUG: Total peptides inserted: 1

11 May 2020 15:48:11,560 INFO : Inserting HIF1A

11 May 2020 15:48:11,565 INFO : 29% Done

11 May 2020 15:48:11,944 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:11,945 INFO : Inserting HPN

11 May 2020 15:48:11,949 INFO : 31% Done

11 May 2020 15:48:12,148 INFO : 32% Done

11 May 2020 15:48:12,395 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:12,395 INFO : Inserting HSPB1

11 May 2020 15:48:12,400 INFO : 33% Done

11 May 2020 15:48:12,636 INFO : 34% Done

11 May 2020 15:48:12,847 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:12,847 INFO : Inserting HXC6

11 May 2020 15:48:12,852 INFO : 35% Done

11 May 2020 15:48:13,045 INFO : 36% Done

11 May 2020 15:48:13,214 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:13,214 INFO : Inserting KLK11

11 May 2020 15:48:13,219 INFO : 38% Done

11 May 2020 15:48:13,597 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:13,598 INFO : Inserting KLK2

11 May 2020 15:48:13,603 INFO : 40% Done

11 May 2020 15:48:13,835 INFO : 41% Done

11 May 2020 15:48:14,016 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:14,016 INFO : Inserting MMP2

11 May 2020 15:48:14,020 INFO : 42% Done

11 May 2020 15:48:14,212 INFO : 43% Done

11 May 2020 15:48:14,378 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:14,378 INFO : Inserting MMP9

11 May 2020 15:48:14,384 INFO : 44% Done

11 May 2020 15:48:14,599 DEBUG: Total peptides inserted: 1

11 May 2020 15:48:14,599 INFO : Inserting MUC1

11 May 2020 15:48:14,604 INFO : 45% Done

11 May 2020 15:48:14,784 DEBUG: Total peptides inserted: 1

11 May 2020 15:48:14,784 INFO : Inserting MUC6

11 May 2020 15:48:14,789 INFO : 46% Done

11 May 2020 15:48:14,955 INFO : 47% Done

11 May 2020 15:48:15,127 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:15,127 INFO : Inserting MYC

11 May 2020 15:48:15,131 INFO : 48% Done

11 May 2020 15:48:15,289 INFO : 49% Done

11 May 2020 15:48:15,438 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:15,439 INFO : Inserting MYCN

11 May 2020 15:48:15,443 INFO : 50% Done

11 May 2020 15:48:15,632 INFO : 51% Done

11 May 2020 15:48:15,797 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:15,797 INFO : Inserting MYO6

11 May 2020 15:48:15,804 INFO : 52% Done

11 May 2020 15:48:16,043 INFO : 53% Done

11 May 2020 15:48:16,208 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:16,208 INFO : Inserting NCOA2

11 May 2020 15:48:16,212 INFO : 54% Done

11 May 2020 15:48:16,390 DEBUG: Total peptides inserted: 1

11 May 2020 15:48:16,390 INFO : Inserting NPY

11 May 2020 15:48:16,395 INFO : 55% Done

11 May 2020 15:48:16,599 INFO : 56% Done

11 May 2020 15:48:16,822 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:16,822 INFO : Inserting O51E2

11 May 2020 15:48:16,827 INFO : 57% Done

11 May 2020 15:48:17,039 INFO : 58% Done

11 May 2020 15:48:17,247 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:17,247 INFO : Inserting OSTP

11 May 2020 15:48:17,251 INFO : 59% Done

11 May 2020 15:48:17,447 INFO : 60% Done

11 May 2020 15:48:17,630 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:17,631 INFO : Inserting P53

11 May 2020 15:48:17,635 INFO : 61% Done

11 May 2020 15:48:17,807 INFO : 62% Done

11 May 2020 15:48:17,967 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:17,967 INFO : Inserting PAFA

11 May 2020 15:48:17,972 INFO : 63% Done

11 May 2020 15:48:18,143 INFO : 64% Done

11 May 2020 15:48:18,306 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:18,306 INFO : Inserting PGFRB

11 May 2020 15:48:18,310 INFO : 65% Done

11 May 2020 15:48:18,476 INFO : 66% Done

11 May 2020 15:48:18,657 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:18,658 INFO : Inserting PK3CA

11 May 2020 15:48:18,662 INFO : 67% Done

11 May 2020 15:48:18,830 INFO : 68% Done

11 May 2020 15:48:19,002 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:19,002 INFO : Inserting RAF1

11 May 2020 15:48:19,006 INFO : 69% Done

11 May 2020 15:48:19,193 INFO : 71% Done

11 May 2020 15:48:19,420 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:19,420 INFO : Inserting SERPINI1

11 May 2020 15:48:19,427 INFO : 72% Done

11 May 2020 15:48:19,632 INFO : 73% Done

11 May 2020 15:48:19,816 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:19,816 INFO : Inserting SPINK1

11 May 2020 15:48:19,820 INFO : 74% Done

11 May 2020 15:48:19,981 DEBUG: Total peptides inserted: 1

11 May 2020 15:48:19,981 INFO : Inserting SPRC

11 May 2020 15:48:20,171 DEBUG: Total peptides inserted: 1

11 May 2020 15:48:20,172 INFO : Inserting TGFB1

11 May 2020 15:48:20,176 INFO : 75% Done

11 May 2020 15:48:20,376 DEBUG: Total peptides inserted: 1

11 May 2020 15:48:20,376 INFO : Inserting TMPS2

11 May 2020 15:48:20,381 INFO : 76% Done

11 May 2020 15:48:20,565 INFO : 77% Done

11 May 2020 15:48:20,760 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:20,761 INFO : Inserting TPM2

11 May 2020 15:48:20,765 INFO : 78% Done

11 May 2020 15:48:20,956 INFO : 79% Done

11 May 2020 15:48:21,162 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:21,162 INFO : Inserting TWST1

11 May 2020 15:48:21,167 INFO : 80% Done

11 May 2020 15:48:21,374 INFO : 81% Done

11 May 2020 15:48:21,548 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:21,548 INFO : Inserting VEGFA

11 May 2020 15:48:21,553 INFO : 82% Done

11 May 2020 15:48:21,742 DEBUG: Total peptides inserted: 1

11 May 2020 15:48:21,743 INFO : Inserting PSA

11 May 2020 15:48:21,748 INFO : 84% Done

11 May 2020 15:48:22,019 DEBUG: Total peptides inserted: 1

11 May 2020 15:48:22,020 INFO : Inserting ERG_pan

11 May 2020 15:48:22,024 INFO : 85% Done

11 May 2020 15:48:22,173 INFO : 86% Done

11 May 2020 15:48:22,500 INFO : 87% Done

11 May 2020 15:48:22,679 INFO : 88% Done

11 May 2020 15:48:22,858 INFO : 90% Done

11 May 2020 15:48:23,041 DEBUG: Total peptides inserted: 6

11 May 2020 15:48:23,041 INFO : Inserting ETV1

11 May 2020 15:48:23,045 INFO : 91% Done

11 May 2020 15:48:23,237 INFO : 92% Done

11 May 2020 15:48:23,424 INFO : 93% Done

11 May 2020 15:48:23,594 DEBUG: Total peptides inserted: 3

11 May 2020 15:48:23,594 INFO : Inserting ERG8

11 May 2020 15:48:23,599 INFO : 94% Done

11 May 2020 15:48:23,787 INFO : 95% Done

11 May 2020 15:48:23,961 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:23,961 INFO : Inserting SMAD4

11 May 2020 15:48:23,966 INFO : 96% Done

11 May 2020 15:48:24,144 DEBUG: Total peptides inserted: 1

11 May 2020 15:48:24,144 INFO : Inserting STAT3

11 May 2020 15:48:24,148 INFO : 97% Done

11 May 2020 15:48:24,343 INFO : 98% Done

11 May 2020 15:48:24,527 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:24,527 INFO : Done parsing Skyline document.

11 May 2020 15:48:24,529 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:48:24,659 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:48:26,099 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:48:26,247 INFO : Cleaning up temp tables

11 May 2020 15:48:26,655 INFO : Completed import of Skyline document from CPDR-FFPE-ID-159_seg2_2020-01-28_10-08-47.sky.zip

11 May 2020 15:48:26,657 INFO : 100% Done

11 May 2020 15:48:26,665 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80098/CPDR-FFPE-ID-159_seg2_2020-01-28_10-08-47.sky.zip into the system

11 May 2020 15:48:26,666 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80087/CPDR-FFPE-ID-74_seg2_2020-01-28_10-04-31/CPDR-FFPE-ID-74_seg2.skyd into the system

11 May 2020 15:48:26,667 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80087/CPDR-FFPE-ID-74_seg2_2020-01-28_10-04-31/CPDR-FFPE-ID-74_seg2.skyd into the system

11 May 2020 15:48:26,667 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80087/CPDR-FFPE-ID-74_seg2_2020-01-28_10-04-31.sky.zip into the system

11 May 2020 15:48:26,670 INFO : Starting import from CPDR-FFPE-ID-74_seg2_2020-01-28_10-04-31.sky.zip

11 May 2020 15:48:26,675 INFO : Starting to import Skyline document from CPDR-FFPE-ID-74_seg2_2020-01-28_10-04-31.sky.zip

11 May 2020 15:48:26,690 INFO : Expanding CPDR-FFPE-ID-74_seg2.skyd

11 May 2020 15:48:27,225 INFO : Expanding CPDR-FFPE-ID-74_seg2.sky.view

11 May 2020 15:48:27,226 INFO : Expanding CPDR-FFPE-ID-74_seg2.sky

11 May 2020 15:48:27,273 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 15:48:27,277 INFO : 1% Done

11 May 2020 15:48:27,739 INFO : Inserting TFF3

11 May 2020 15:48:27,745 INFO : 2% Done

11 May 2020 15:48:27,918 DEBUG: Total peptides inserted: 1

11 May 2020 15:48:27,918 INFO : Inserting AKT1

11 May 2020 15:48:27,921 INFO : 3% Done

11 May 2020 15:48:28,111 INFO : 4% Done

11 May 2020 15:48:28,277 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:28,277 INFO : Inserting AMACR

11 May 2020 15:48:28,282 INFO : 5% Done

11 May 2020 15:48:28,480 INFO : 6% Done

11 May 2020 15:48:28,664 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:28,664 INFO : Inserting ANDR

11 May 2020 15:48:28,669 INFO : 7% Done

11 May 2020 15:48:28,860 INFO : 8% Done

11 May 2020 15:48:29,042 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:29,042 INFO : Inserting ANXA2

11 May 2020 15:48:29,047 INFO : 10% Done

11 May 2020 15:48:29,245 DEBUG: Total peptides inserted: 1

11 May 2020 15:48:29,245 INFO : Inserting AURKA

11 May 2020 15:48:29,249 INFO : 11% Done

11 May 2020 15:48:29,430 INFO : 12% Done

11 May 2020 15:48:29,604 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:29,604 INFO : Inserting BRAF

11 May 2020 15:48:29,608 INFO : 13% Done

11 May 2020 15:48:29,770 INFO : 14% Done

11 May 2020 15:48:29,962 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:29,962 INFO : Inserting CAMKK2

11 May 2020 15:48:29,966 INFO : 15% Done

11 May 2020 15:48:30,160 DEBUG: Total peptides inserted: 1

11 May 2020 15:48:30,160 INFO : Inserting CCND1

11 May 2020 15:48:30,164 INFO : 16% Done

11 May 2020 15:48:30,320 DEBUG: Total peptides inserted: 1

11 May 2020 15:48:30,320 INFO : Inserting CDN1A

11 May 2020 15:48:30,325 INFO : 17% Done

11 May 2020 15:48:30,500 INFO : 18% Done

11 May 2020 15:48:30,710 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:30,711 INFO : Inserting CRISP3

11 May 2020 15:48:30,715 INFO : 19% Done

11 May 2020 15:48:30,922 INFO : 20% Done

11 May 2020 15:48:31,131 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:31,131 INFO : Inserting DCOR

11 May 2020 15:48:31,135 INFO : 21% Done

11 May 2020 15:48:31,308 INFO : 22% Done

11 May 2020 15:48:31,473 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:31,474 INFO : Inserting EGFR

11 May 2020 15:48:31,478 INFO : 23% Done

11 May 2020 15:48:31,649 DEBUG: Total peptides inserted: 1

11 May 2020 15:48:31,649 INFO : Inserting EZH2

11 May 2020 15:48:31,653 INFO : 24% Done

11 May 2020 15:48:31,822 INFO : 25% Done

11 May 2020 15:48:31,961 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:31,961 INFO : Inserting FGFR1

11 May 2020 15:48:32,141 INFO : 26% Done

11 May 2020 15:48:32,315 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:32,315 INFO : Inserting FOLH1

11 May 2020 15:48:32,319 INFO : 27% Done

11 May 2020 15:48:32,514 DEBUG: Total peptides inserted: 1

11 May 2020 15:48:32,514 INFO : Inserting HIF1A

11 May 2020 15:48:32,518 INFO : 28% Done

11 May 2020 15:48:32,702 INFO : 29% Done

11 May 2020 15:48:32,869 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:32,869 INFO : Inserting HPN

11 May 2020 15:48:32,873 INFO : 30% Done

11 May 2020 15:48:33,067 INFO : 32% Done

11 May 2020 15:48:33,250 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:33,250 INFO : Inserting HSPB1

11 May 2020 15:48:33,255 INFO : 33% Done

11 May 2020 15:48:33,454 INFO : 34% Done

11 May 2020 15:48:33,704 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:33,704 INFO : Inserting HXC6

11 May 2020 15:48:33,708 INFO : 35% Done

11 May 2020 15:48:33,941 INFO : 36% Done

11 May 2020 15:48:34,125 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:34,125 INFO : Inserting KLK11

11 May 2020 15:48:34,133 INFO : 37% Done

11 May 2020 15:48:34,328 INFO : 38% Done

11 May 2020 15:48:34,496 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:34,496 INFO : Inserting KLK2

11 May 2020 15:48:34,501 INFO : 39% Done

11 May 2020 15:48:34,706 INFO : 40% Done

11 May 2020 15:48:34,888 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:34,888 INFO : Inserting MMP2

11 May 2020 15:48:34,893 INFO : 41% Done

11 May 2020 15:48:35,100 INFO : 43% Done

11 May 2020 15:48:35,307 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:35,307 INFO : Inserting MMP9

11 May 2020 15:48:35,312 INFO : 44% Done

11 May 2020 15:48:35,555 DEBUG: Total peptides inserted: 1

11 May 2020 15:48:35,555 INFO : Inserting MUC1

11 May 2020 15:48:35,560 INFO : 45% Done

11 May 2020 15:48:35,649 DEBUG: Total peptides inserted: 1

11 May 2020 15:48:35,649 INFO : Inserting MUC6

11 May 2020 15:48:35,654 INFO : 46% Done

11 May 2020 15:48:35,747 INFO : 47% Done

11 May 2020 15:48:35,843 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:35,844 INFO : Inserting MYC

11 May 2020 15:48:35,848 INFO : 48% Done

11 May 2020 15:48:35,944 INFO : 49% Done

11 May 2020 15:48:36,034 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:36,034 INFO : Inserting MYCN

11 May 2020 15:48:36,038 INFO : 50% Done

11 May 2020 15:48:36,149 INFO : 51% Done

11 May 2020 15:48:36,249 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:36,249 INFO : Inserting MYO6

11 May 2020 15:48:36,254 INFO : 52% Done

11 May 2020 15:48:36,362 INFO : 53% Done

11 May 2020 15:48:36,444 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:36,444 INFO : Inserting NCOA2

11 May 2020 15:48:36,448 INFO : 54% Done

11 May 2020 15:48:36,549 DEBUG: Total peptides inserted: 1

11 May 2020 15:48:36,549 INFO : Inserting NPY

11 May 2020 15:48:36,553 INFO : 55% Done

11 May 2020 15:48:36,725 INFO : 56% Done

11 May 2020 15:48:36,897 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:36,898 INFO : Inserting O51E2

11 May 2020 15:48:36,902 INFO : 57% Done

11 May 2020 15:48:37,074 INFO : 58% Done

11 May 2020 15:48:37,226 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:37,227 INFO : Inserting OSTP

11 May 2020 15:48:37,229 INFO : 59% Done

11 May 2020 15:48:37,382 INFO : 60% Done

11 May 2020 15:48:37,550 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:37,550 INFO : Inserting P53

11 May 2020 15:48:37,555 INFO : 61% Done

11 May 2020 15:48:37,722 INFO : 62% Done

11 May 2020 15:48:37,870 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:37,870 INFO : Inserting PAFA

11 May 2020 15:48:37,874 INFO : 63% Done

11 May 2020 15:48:38,038 INFO : 64% Done

11 May 2020 15:48:38,202 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:38,202 INFO : Inserting PGFRB

11 May 2020 15:48:38,207 INFO : 65% Done

11 May 2020 15:48:38,382 INFO : 66% Done

11 May 2020 15:48:38,565 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:38,566 INFO : Inserting PK3CA

11 May 2020 15:48:38,570 INFO : 67% Done

11 May 2020 15:48:38,761 INFO : 68% Done

11 May 2020 15:48:38,941 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:38,941 INFO : Inserting RAF1

11 May 2020 15:48:38,946 INFO : 69% Done

11 May 2020 15:48:39,115 INFO : 71% Done

11 May 2020 15:48:39,307 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:39,308 INFO : Inserting SERPINI1

11 May 2020 15:48:39,312 INFO : 72% Done

11 May 2020 15:48:39,561 INFO : 73% Done

11 May 2020 15:48:39,716 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:39,716 INFO : Inserting SPINK1

11 May 2020 15:48:39,720 INFO : 74% Done

11 May 2020 15:48:40,737 DEBUG: Total peptides inserted: 1

11 May 2020 15:48:40,737 INFO : Inserting SPRC

11 May 2020 15:48:40,915 DEBUG: Total peptides inserted: 1

11 May 2020 15:48:40,915 INFO : Inserting TGFB1

11 May 2020 15:48:40,920 INFO : 75% Done

11 May 2020 15:48:41,104 DEBUG: Total peptides inserted: 1

11 May 2020 15:48:41,104 INFO : Inserting TMPS2

11 May 2020 15:48:41,109 INFO : 76% Done

11 May 2020 15:48:41,308 INFO : 77% Done

11 May 2020 15:48:41,486 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:41,487 INFO : Inserting TPM2

11 May 2020 15:48:41,491 INFO : 78% Done

11 May 2020 15:48:41,678 INFO : 79% Done

11 May 2020 15:48:41,905 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:41,905 INFO : Inserting TWST1

11 May 2020 15:48:41,909 INFO : 80% Done

11 May 2020 15:48:42,087 INFO : 81% Done

11 May 2020 15:48:42,261 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:42,261 INFO : Inserting VEGFA

11 May 2020 15:48:42,266 INFO : 82% Done

11 May 2020 15:48:42,438 DEBUG: Total peptides inserted: 1

11 May 2020 15:48:42,439 INFO : Inserting PSA

11 May 2020 15:48:42,447 INFO : 84% Done

11 May 2020 15:48:42,662 DEBUG: Total peptides inserted: 1

11 May 2020 15:48:42,662 INFO : Inserting ERG_pan

11 May 2020 15:48:42,667 INFO : 85% Done

11 May 2020 15:48:42,825 INFO : 86% Done

11 May 2020 15:48:43,143 INFO : 87% Done

11 May 2020 15:48:43,312 INFO : 88% Done

11 May 2020 15:48:43,479 INFO : 90% Done

11 May 2020 15:48:43,641 DEBUG: Total peptides inserted: 6

11 May 2020 15:48:43,642 INFO : Inserting ETV1

11 May 2020 15:48:43,646 INFO : 91% Done

11 May 2020 15:48:43,837 INFO : 92% Done

11 May 2020 15:48:44,014 INFO : 93% Done

11 May 2020 15:48:44,198 DEBUG: Total peptides inserted: 3

11 May 2020 15:48:44,198 INFO : Inserting ERG8

11 May 2020 15:48:44,202 INFO : 94% Done

11 May 2020 15:48:44,385 INFO : 95% Done

11 May 2020 15:48:44,553 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:44,553 INFO : Inserting SMAD4

11 May 2020 15:48:44,557 INFO : 96% Done

11 May 2020 15:48:44,721 DEBUG: Total peptides inserted: 1

11 May 2020 15:48:44,721 INFO : Inserting STAT3

11 May 2020 15:48:44,726 INFO : 97% Done

11 May 2020 15:48:44,928 INFO : 98% Done

11 May 2020 15:48:45,095 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:45,095 INFO : Done parsing Skyline document.

11 May 2020 15:48:45,097 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:48:45,266 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:48:46,177 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:48:46,476 INFO : Cleaning up temp tables

11 May 2020 15:48:46,804 INFO : Completed import of Skyline document from CPDR-FFPE-ID-74_seg2_2020-01-28_10-04-31.sky.zip

11 May 2020 15:48:46,806 INFO : 100% Done

11 May 2020 15:48:46,812 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80087/CPDR-FFPE-ID-74_seg2_2020-01-28_10-04-31.sky.zip into the system

11 May 2020 15:48:46,812 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80082/CPDR-FFPE-ID-14_seg2_2020-01-28_10-01-45/CPDR-FFPE-ID-14_seg2.skyd into the system

11 May 2020 15:48:46,813 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80082/CPDR-FFPE-ID-14_seg2_2020-01-28_10-01-45/CPDR-FFPE-ID-14_seg2.skyd into the system

11 May 2020 15:48:46,813 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80082/CPDR-FFPE-ID-14_seg2_2020-01-28_10-01-45.sky.zip into the system

11 May 2020 15:48:46,814 INFO : Starting import from CPDR-FFPE-ID-14_seg2_2020-01-28_10-01-45.sky.zip

11 May 2020 15:48:46,817 INFO : Starting to import Skyline document from CPDR-FFPE-ID-14_seg2_2020-01-28_10-01-45.sky.zip

11 May 2020 15:48:46,826 INFO : Expanding CPDR-FFPE-ID-14_seg2.skyd

11 May 2020 15:48:47,109 INFO : Expanding CPDR-FFPE-ID-14_seg2.sky.view

11 May 2020 15:48:47,110 INFO : Expanding CPDR-FFPE-ID-14_seg2.sky

11 May 2020 15:48:47,163 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 15:48:47,166 INFO : 1% Done

11 May 2020 15:48:47,665 INFO : Inserting TFF3

11 May 2020 15:48:47,670 INFO : 2% Done

11 May 2020 15:48:47,753 DEBUG: Total peptides inserted: 1

11 May 2020 15:48:47,753 INFO : Inserting AKT1

11 May 2020 15:48:47,755 INFO : 3% Done

11 May 2020 15:48:47,838 INFO : 4% Done

11 May 2020 15:48:47,924 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:47,925 INFO : Inserting AMACR

11 May 2020 15:48:47,927 INFO : 5% Done

11 May 2020 15:48:48,014 INFO : 6% Done

11 May 2020 15:48:48,197 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:48,197 INFO : Inserting ANDR

11 May 2020 15:48:48,202 INFO : 7% Done

11 May 2020 15:48:48,393 INFO : 8% Done

11 May 2020 15:48:48,565 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:48,565 INFO : Inserting ANXA2

11 May 2020 15:48:48,570 INFO : 9% Done

11 May 2020 15:48:48,759 DEBUG: Total peptides inserted: 1

11 May 2020 15:48:48,759 INFO : 10% Done

11 May 2020 15:48:48,759 INFO : Inserting AURKA

11 May 2020 15:48:48,959 INFO : 12% Done

11 May 2020 15:48:49,140 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:49,140 INFO : Inserting BRAF

11 May 2020 15:48:49,145 INFO : 13% Done

11 May 2020 15:48:49,323 INFO : 14% Done

11 May 2020 15:48:49,496 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:49,497 INFO : Inserting CAMKK2

11 May 2020 15:48:49,501 INFO : 15% Done

11 May 2020 15:48:49,707 DEBUG: Total peptides inserted: 1

11 May 2020 15:48:49,708 INFO : Inserting CCND1

11 May 2020 15:48:49,712 INFO : 16% Done

11 May 2020 15:48:49,900 DEBUG: Total peptides inserted: 1

11 May 2020 15:48:49,900 INFO : Inserting CDN1A

11 May 2020 15:48:49,905 INFO : 17% Done

11 May 2020 15:48:50,106 INFO : 18% Done

11 May 2020 15:48:50,305 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:50,305 INFO : Inserting CRISP3

11 May 2020 15:48:50,310 INFO : 19% Done

11 May 2020 15:48:50,509 INFO : 20% Done

11 May 2020 15:48:50,710 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:50,711 INFO : Inserting DCOR

11 May 2020 15:48:50,715 INFO : 21% Done

11 May 2020 15:48:50,907 INFO : 22% Done

11 May 2020 15:48:51,091 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:51,091 INFO : Inserting EGFR

11 May 2020 15:48:51,095 INFO : 23% Done

11 May 2020 15:48:51,308 DEBUG: Total peptides inserted: 1

11 May 2020 15:48:51,308 INFO : Inserting EZH2

11 May 2020 15:48:51,313 INFO : 24% Done

11 May 2020 15:48:51,522 INFO : 25% Done

11 May 2020 15:48:51,711 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:51,711 INFO : Inserting FGFR1

11 May 2020 15:48:51,918 INFO : 26% Done

11 May 2020 15:48:52,119 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:52,119 INFO : Inserting FOLH1

11 May 2020 15:48:52,124 INFO : 27% Done

11 May 2020 15:48:52,336 DEBUG: Total peptides inserted: 1

11 May 2020 15:48:52,336 INFO : Inserting HIF1A

11 May 2020 15:48:52,341 INFO : 28% Done

11 May 2020 15:48:52,534 INFO : 29% Done

11 May 2020 15:48:52,714 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:52,715 INFO : Inserting HPN

11 May 2020 15:48:52,719 INFO : 30% Done

11 May 2020 15:48:52,908 INFO : 31% Done

11 May 2020 15:48:53,122 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:53,122 INFO : Inserting HSPB1

11 May 2020 15:48:53,127 INFO : 33% Done

11 May 2020 15:48:53,389 INFO : 34% Done

11 May 2020 15:48:53,610 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:53,610 INFO : Inserting HXC6

11 May 2020 15:48:53,615 INFO : 35% Done

11 May 2020 15:48:53,834 INFO : 36% Done

11 May 2020 15:48:54,007 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:54,008 INFO : Inserting KLK11

11 May 2020 15:48:54,013 INFO : 37% Done

11 May 2020 15:48:54,235 INFO : 38% Done

11 May 2020 15:48:54,429 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:54,430 INFO : Inserting KLK2

11 May 2020 15:48:54,434 INFO : 39% Done

11 May 2020 15:48:54,625 INFO : 40% Done

11 May 2020 15:48:54,803 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:54,803 INFO : Inserting MMP2

11 May 2020 15:48:54,808 INFO : 41% Done

11 May 2020 15:48:55,012 INFO : 42% Done

11 May 2020 15:48:55,205 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:55,206 INFO : Inserting MMP9

11 May 2020 15:48:55,210 INFO : 43% Done

11 May 2020 15:48:55,413 DEBUG: Total peptides inserted: 1

11 May 2020 15:48:55,413 INFO : 44% Done

11 May 2020 15:48:55,413 INFO : Inserting MUC1

11 May 2020 15:48:55,418 INFO : 45% Done

11 May 2020 15:48:55,608 DEBUG: Total peptides inserted: 1

11 May 2020 15:48:55,609 INFO : Inserting MUC6

11 May 2020 15:48:55,789 INFO : 47% Done

11 May 2020 15:48:55,978 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:55,978 INFO : Inserting MYC

11 May 2020 15:48:55,983 INFO : 48% Done

11 May 2020 15:48:56,296 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:56,296 INFO : Inserting MYCN

11 May 2020 15:48:56,301 INFO : 50% Done

11 May 2020 15:48:56,463 INFO : 51% Done

11 May 2020 15:48:56,690 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:56,690 INFO : Inserting MYO6

11 May 2020 15:48:56,695 INFO : 52% Done

11 May 2020 15:48:56,882 INFO : 53% Done

11 May 2020 15:48:57,051 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:57,051 INFO : Inserting NCOA2

11 May 2020 15:48:57,056 INFO : 54% Done

11 May 2020 15:48:57,252 DEBUG: Total peptides inserted: 1

11 May 2020 15:48:57,252 INFO : Inserting NPY

11 May 2020 15:48:57,257 INFO : 55% Done

11 May 2020 15:48:57,464 INFO : 56% Done

11 May 2020 15:48:57,662 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:57,663 INFO : Inserting O51E2

11 May 2020 15:48:57,667 INFO : 57% Done

11 May 2020 15:48:57,863 INFO : 58% Done

11 May 2020 15:48:58,058 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:58,058 INFO : Inserting OSTP

11 May 2020 15:48:58,062 INFO : 59% Done

11 May 2020 15:48:58,226 INFO : 60% Done

11 May 2020 15:48:58,400 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:58,400 INFO : Inserting P53

11 May 2020 15:48:58,405 INFO : 61% Done

11 May 2020 15:48:58,630 INFO : 62% Done

11 May 2020 15:48:58,834 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:58,834 INFO : Inserting PAFA

11 May 2020 15:48:58,839 INFO : 63% Done

11 May 2020 15:48:59,021 INFO : 64% Done

11 May 2020 15:48:59,194 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:59,194 INFO : Inserting PGFRB

11 May 2020 15:48:59,199 INFO : 65% Done

11 May 2020 15:48:59,412 INFO : 66% Done

11 May 2020 15:48:59,605 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:59,605 INFO : Inserting PK3CA

11 May 2020 15:48:59,610 INFO : 67% Done

11 May 2020 15:48:59,803 INFO : 68% Done

11 May 2020 15:48:59,978 DEBUG: Total peptides inserted: 2

11 May 2020 15:48:59,978 INFO : Inserting RAF1

11 May 2020 15:48:59,982 INFO : 69% Done

11 May 2020 15:49:00,162 INFO : 70% Done

11 May 2020 15:49:00,369 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:00,370 INFO : Inserting SERPINI1

11 May 2020 15:49:00,375 INFO : 71% Done

11 May 2020 15:49:00,570 INFO : 72% Done

11 May 2020 15:49:00,758 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:00,758 INFO : Inserting SPINK1

11 May 2020 15:49:00,763 INFO : 74% Done

11 May 2020 15:49:00,958 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:00,958 INFO : Inserting SPRC

11 May 2020 15:49:01,150 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:01,150 INFO : Inserting TGFB1

11 May 2020 15:49:01,156 INFO : 75% Done

11 May 2020 15:49:01,347 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:01,348 INFO : Inserting TMPS2

11 May 2020 15:49:01,353 INFO : 76% Done

11 May 2020 15:49:01,584 INFO : 77% Done

11 May 2020 15:49:01,801 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:01,801 INFO : Inserting TPM2

11 May 2020 15:49:01,805 INFO : 78% Done

11 May 2020 15:49:02,036 INFO : 79% Done

11 May 2020 15:49:02,260 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:02,260 INFO : Inserting TWST1

11 May 2020 15:49:02,264 INFO : 80% Done

11 May 2020 15:49:02,451 INFO : 81% Done

11 May 2020 15:49:02,644 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:02,644 INFO : Inserting VEGFA

11 May 2020 15:49:02,649 INFO : 82% Done

11 May 2020 15:49:02,844 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:02,844 INFO : Inserting PSA

11 May 2020 15:49:02,849 INFO : 84% Done

11 May 2020 15:49:03,063 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:03,063 INFO : Inserting ERG_pan

11 May 2020 15:49:03,068 INFO : 85% Done

11 May 2020 15:49:03,252 INFO : 86% Done

11 May 2020 15:49:03,424 INFO : 87% Done

11 May 2020 15:49:03,587 INFO : 88% Done

11 May 2020 15:49:03,771 INFO : 89% Done

11 May 2020 15:49:03,960 INFO : 90% Done

11 May 2020 15:49:04,149 DEBUG: Total peptides inserted: 6

11 May 2020 15:49:04,150 INFO : Inserting ETV1

11 May 2020 15:49:04,154 INFO : 91% Done

11 May 2020 15:49:04,332 INFO : 92% Done

11 May 2020 15:49:04,510 INFO : 93% Done

11 May 2020 15:49:04,710 DEBUG: Total peptides inserted: 3

11 May 2020 15:49:04,710 INFO : Inserting ERG8

11 May 2020 15:49:04,714 INFO : 94% Done

11 May 2020 15:49:04,894 INFO : 95% Done

11 May 2020 15:49:05,097 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:05,097 INFO : Inserting SMAD4

11 May 2020 15:49:05,102 INFO : 96% Done

11 May 2020 15:49:05,290 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:05,291 INFO : Inserting STAT3

11 May 2020 15:49:05,296 INFO : 97% Done

11 May 2020 15:49:05,492 INFO : 98% Done

11 May 2020 15:49:05,680 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:05,680 INFO : Done parsing Skyline document.

11 May 2020 15:49:05,682 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:49:05,817 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:49:06,870 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:49:07,105 INFO : Cleaning up temp tables

11 May 2020 15:49:07,107 INFO : Completed import of Skyline document from CPDR-FFPE-ID-14_seg2_2020-01-28_10-01-45.sky.zip

11 May 2020 15:49:07,121 INFO : 100% Done

11 May 2020 15:49:07,127 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80082/CPDR-FFPE-ID-14_seg2_2020-01-28_10-01-45.sky.zip into the system

11 May 2020 15:49:07,127 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80075/CPDR-FFPE-ID-728_seg1_2020-01-28_09-58-31/CPDR-FFPE-ID-728_seg1.skyd into the system

11 May 2020 15:49:07,128 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80075/CPDR-FFPE-ID-728_seg1_2020-01-28_09-58-31/CPDR-FFPE-ID-728_seg1.skyd into the system

11 May 2020 15:49:07,128 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80075/CPDR-FFPE-ID-728_seg1_2020-01-28_09-58-31.sky.zip into the system

11 May 2020 15:49:07,130 INFO : Starting import from CPDR-FFPE-ID-728_seg1_2020-01-28_09-58-31.sky.zip

11 May 2020 15:49:07,133 INFO : Starting to import Skyline document from CPDR-FFPE-ID-728_seg1_2020-01-28_09-58-31.sky.zip

11 May 2020 15:49:07,141 INFO : Expanding CPDR-FFPE-ID-728_seg1.skyd

11 May 2020 15:49:07,380 INFO : Expanding CPDR-FFPE-ID-728_seg1.sky.view

11 May 2020 15:49:07,380 INFO : Expanding CPDR-FFPE-ID-728_seg1.sky

11 May 2020 15:49:07,386 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 15:49:07,388 INFO : 2% Done

11 May 2020 15:49:07,671 INFO : Inserting ANXA2

11 May 2020 15:49:07,675 INFO : 9% Done

11 May 2020 15:49:07,753 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:07,753 INFO : 10% Done

11 May 2020 15:49:07,753 INFO : Inserting CAMKK2

11 May 2020 15:49:07,755 INFO : 16% Done

11 May 2020 15:49:07,836 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:07,836 INFO : Inserting CCND1

11 May 2020 15:49:07,838 INFO : 23% Done

11 May 2020 15:49:07,919 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:07,919 INFO : Inserting EGFR

11 May 2020 15:49:07,921 INFO : 27% Done

11 May 2020 15:49:08,014 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:08,014 INFO : Inserting ERG_pan

11 May 2020 15:49:08,019 INFO : 34% Done

11 May 2020 15:49:08,210 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:08,210 INFO : Inserting FOLH1

11 May 2020 15:49:08,215 INFO : 42% Done

11 May 2020 15:49:08,420 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:08,420 INFO : Inserting MMP9

11 May 2020 15:49:08,425 INFO : 48% Done

11 May 2020 15:49:08,564 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:08,564 INFO : Inserting MUC1

11 May 2020 15:49:08,568 INFO : 54% Done

11 May 2020 15:49:08,669 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:08,669 INFO : Inserting NCOA2

11 May 2020 15:49:08,673 INFO : 59% Done

11 May 2020 15:49:08,751 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:08,751 INFO : Inserting PSA

11 May 2020 15:49:08,756 INFO : 66% Done

11 May 2020 15:49:08,869 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:08,869 INFO : Inserting SMAD4

11 May 2020 15:49:08,873 INFO : 71% Done

11 May 2020 15:49:08,954 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:08,954 INFO : Inserting SPINK1

11 May 2020 15:49:08,958 INFO : 76% Done

11 May 2020 15:49:09,050 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:09,050 INFO : Inserting SPRC

11 May 2020 15:49:09,054 INFO : 80% Done

11 May 2020 15:49:09,135 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:09,135 INFO : Inserting TFF3

11 May 2020 15:49:09,140 INFO : 87% Done

11 May 2020 15:49:09,253 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:09,254 INFO : Inserting TGFB1

11 May 2020 15:49:09,257 INFO : 92% Done

11 May 2020 15:49:09,339 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:09,339 INFO : Inserting VEGFA

11 May 2020 15:49:09,344 INFO : 98% Done

11 May 2020 15:49:09,446 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:09,446 INFO : Done parsing Skyline document.

11 May 2020 15:49:09,447 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:49:09,517 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:49:09,632 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:49:09,659 INFO : Cleaning up temp tables

11 May 2020 15:49:09,668 INFO : Completed import of Skyline document from CPDR-FFPE-ID-728_seg1_2020-01-28_09-58-31.sky.zip

11 May 2020 15:49:09,669 INFO : 100% Done

11 May 2020 15:49:09,678 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80075/CPDR-FFPE-ID-728_seg1_2020-01-28_09-58-31.sky.zip into the system

11 May 2020 15:49:09,678 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80059/CPDR-FFPE-ID-89_seg1_2020-01-28_09-53-49/CPDR-FFPE-ID-89_seg1.skyd into the system

11 May 2020 15:49:09,680 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80059/CPDR-FFPE-ID-89_seg1_2020-01-28_09-53-49/CPDR-FFPE-ID-89_seg1.skyd into the system

11 May 2020 15:49:09,680 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80059/CPDR-FFPE-ID-89_seg1_2020-01-28_09-53-49.sky.zip into the system

11 May 2020 15:49:09,683 INFO : Starting import from CPDR-FFPE-ID-89_seg1_2020-01-28_09-53-49.sky.zip

11 May 2020 15:49:09,689 INFO : Starting to import Skyline document from CPDR-FFPE-ID-89_seg1_2020-01-28_09-53-49.sky.zip

11 May 2020 15:49:09,712 INFO : Expanding CPDR-FFPE-ID-89_seg1.skyd

11 May 2020 15:49:10,405 INFO : Expanding CPDR-FFPE-ID-89_seg1.sky.view

11 May 2020 15:49:10,406 INFO : Expanding CPDR-FFPE-ID-89_seg1.sky

11 May 2020 15:49:10,419 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 15:49:10,423 INFO : 3% Done

11 May 2020 15:49:10,856 INFO : Inserting ANXA2

11 May 2020 15:49:10,863 INFO : 10% Done

11 May 2020 15:49:11,032 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:11,032 INFO : Inserting CAMKK2

11 May 2020 15:49:11,037 INFO : 16% Done

11 May 2020 15:49:11,316 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:11,316 INFO : Inserting CCND1

11 May 2020 15:49:11,321 INFO : 22% Done

11 May 2020 15:49:11,520 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:11,520 INFO : Inserting EGFR

11 May 2020 15:49:11,525 INFO : 27% Done

11 May 2020 15:49:11,642 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:11,642 INFO : Inserting ERG_pan

11 May 2020 15:49:11,647 INFO : 34% Done

11 May 2020 15:49:11,776 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:11,776 INFO : Inserting FOLH1

11 May 2020 15:49:11,781 INFO : 40% Done

11 May 2020 15:49:11,885 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:11,885 INFO : Inserting MMP9

11 May 2020 15:49:11,890 INFO : 47% Done

11 May 2020 15:49:12,014 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:12,015 INFO : Inserting MUC1

11 May 2020 15:49:12,019 INFO : 54% Done

11 May 2020 15:49:12,123 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:12,124 INFO : Inserting NCOA2

11 May 2020 15:49:12,127 INFO : 58% Done

11 May 2020 15:49:12,201 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:12,201 INFO : Inserting PSA

11 May 2020 15:49:12,205 INFO : 65% Done

11 May 2020 15:49:12,318 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:12,318 INFO : Inserting SMAD4

11 May 2020 15:49:12,322 INFO : 69% Done

11 May 2020 15:49:12,392 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:12,392 INFO : Inserting SPINK1

11 May 2020 15:49:12,397 INFO : 74% Done

11 May 2020 15:49:12,511 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:12,511 INFO : Inserting SPRC

11 May 2020 15:49:12,515 INFO : 79% Done

11 May 2020 15:49:12,670 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:12,671 INFO : Inserting TFF3

11 May 2020 15:49:12,677 INFO : 86% Done

11 May 2020 15:49:12,916 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:12,916 INFO : Inserting TGFB1

11 May 2020 15:49:12,921 INFO : 91% Done

11 May 2020 15:49:13,046 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:13,046 INFO : Inserting VEGFA

11 May 2020 15:49:13,051 INFO : 98% Done

11 May 2020 15:49:13,186 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:13,186 INFO : Done parsing Skyline document.

11 May 2020 15:49:13,188 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:49:13,207 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:49:13,289 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:49:13,315 INFO : Cleaning up temp tables

11 May 2020 15:49:13,325 INFO : Completed import of Skyline document from CPDR-FFPE-ID-89_seg1_2020-01-28_09-53-49.sky.zip

11 May 2020 15:49:13,326 INFO : 100% Done

11 May 2020 15:49:13,335 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80059/CPDR-FFPE-ID-89_seg1_2020-01-28_09-53-49.sky.zip into the system

11 May 2020 15:49:13,335 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80057/CPDR-FFPE-ID-74_seg1_2020-01-28_09-53-04/CPDR-FFPE-ID-74_seg1.skyd into the system

11 May 2020 15:49:13,336 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80057/CPDR-FFPE-ID-74_seg1_2020-01-28_09-53-04/CPDR-FFPE-ID-74_seg1.skyd into the system

11 May 2020 15:49:13,336 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80057/CPDR-FFPE-ID-74_seg1_2020-01-28_09-53-04.sky.zip into the system

11 May 2020 15:49:13,339 INFO : Starting import from CPDR-FFPE-ID-74_seg1_2020-01-28_09-53-04.sky.zip

11 May 2020 15:49:13,345 INFO : Starting to import Skyline document from CPDR-FFPE-ID-74_seg1_2020-01-28_09-53-04.sky.zip

11 May 2020 15:49:13,369 INFO : Expanding CPDR-FFPE-ID-74_seg1.skyd

11 May 2020 15:49:14,043 INFO : Expanding CPDR-FFPE-ID-74_seg1.sky.view

11 May 2020 15:49:14,044 INFO : Expanding CPDR-FFPE-ID-74_seg1.sky

11 May 2020 15:49:14,051 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 15:49:14,054 INFO : 3% Done

11 May 2020 15:49:14,410 INFO : Inserting ANXA2

11 May 2020 15:49:14,416 INFO : 10% Done

11 May 2020 15:49:14,595 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:14,595 INFO : Inserting CAMKK2

11 May 2020 15:49:14,599 INFO : 16% Done

11 May 2020 15:49:14,760 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:14,760 INFO : Inserting CCND1

11 May 2020 15:49:14,762 INFO : 21% Done

11 May 2020 15:49:14,914 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:14,914 INFO : Inserting EGFR

11 May 2020 15:49:14,917 INFO : 26% Done

11 May 2020 15:49:15,092 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:15,092 INFO : Inserting ERG_pan

11 May 2020 15:49:15,097 INFO : 34% Done

11 May 2020 15:49:15,316 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:15,316 INFO : Inserting FOLH1

11 May 2020 15:49:15,318 INFO : 40% Done

11 May 2020 15:49:15,500 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:15,501 INFO : Inserting MMP9

11 May 2020 15:49:15,504 INFO : 48% Done

11 May 2020 15:49:15,720 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:15,720 INFO : Inserting MUC1

11 May 2020 15:49:15,723 INFO : 54% Done

11 May 2020 15:49:15,881 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:15,881 INFO : Inserting NCOA2

11 May 2020 15:49:15,885 INFO : 59% Done

11 May 2020 15:49:16,008 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:16,008 INFO : Inserting PSA

11 May 2020 15:49:16,010 INFO : 65% Done

11 May 2020 15:49:16,167 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:16,167 INFO : Inserting SMAD4

11 May 2020 15:49:16,169 INFO : 69% Done

11 May 2020 15:49:16,272 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:16,273 INFO : Inserting SPINK1

11 May 2020 15:49:16,275 INFO : 74% Done

11 May 2020 15:49:16,417 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:16,417 INFO : Inserting SPRC

11 May 2020 15:49:16,419 INFO : 79% Done

11 May 2020 15:49:16,584 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:16,584 INFO : Inserting TFF3

11 May 2020 15:49:16,587 INFO : 86% Done

11 May 2020 15:49:16,745 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:16,746 INFO : Inserting TGFB1

11 May 2020 15:49:16,748 INFO : 91% Done

11 May 2020 15:49:16,853 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:16,853 INFO : Inserting VEGFA

11 May 2020 15:49:16,857 INFO : 98% Done

11 May 2020 15:49:17,029 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:17,029 INFO : Done parsing Skyline document.

11 May 2020 15:49:17,031 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:49:17,062 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:49:17,201 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:49:17,251 INFO : Cleaning up temp tables

11 May 2020 15:49:17,728 INFO : Completed import of Skyline document from CPDR-FFPE-ID-74_seg1_2020-01-28_09-53-04.sky.zip

11 May 2020 15:49:17,729 INFO : 100% Done

11 May 2020 15:49:17,741 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80057/CPDR-FFPE-ID-74_seg1_2020-01-28_09-53-04.sky.zip into the system

11 May 2020 15:49:17,741 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80056/CPDR-FFPE-ID-66_seg1_2020-01-28_09-52-46/CPDR-FFPE-ID-66_seg1.skyd into the system

11 May 2020 15:49:17,743 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80056/CPDR-FFPE-ID-66_seg1_2020-01-28_09-52-46/CPDR-FFPE-ID-66_seg1.skyd into the system

11 May 2020 15:49:17,743 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80056/CPDR-FFPE-ID-66_seg1_2020-01-28_09-52-46.sky.zip into the system

11 May 2020 15:49:17,746 INFO : Starting import from CPDR-FFPE-ID-66_seg1_2020-01-28_09-52-46.sky.zip

11 May 2020 15:49:17,752 INFO : Starting to import Skyline document from CPDR-FFPE-ID-66_seg1_2020-01-28_09-52-46.sky.zip

11 May 2020 15:49:17,765 INFO : Expanding CPDR-FFPE-ID-66_seg1.skyd

11 May 2020 15:49:18,231 INFO : Expanding CPDR-FFPE-ID-66_seg1.sky.view

11 May 2020 15:49:18,232 INFO : Expanding CPDR-FFPE-ID-66_seg1.sky

11 May 2020 15:49:18,245 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 15:49:18,248 INFO : 2% Done

11 May 2020 15:49:18,631 INFO : Inserting ANXA2

11 May 2020 15:49:18,635 INFO : 10% Done

11 May 2020 15:49:18,744 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:18,744 INFO : Inserting CAMKK2

11 May 2020 15:49:18,746 INFO : 16% Done

11 May 2020 15:49:18,826 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:18,826 INFO : Inserting CCND1

11 May 2020 15:49:18,828 INFO : 23% Done

11 May 2020 15:49:18,934 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:18,934 INFO : Inserting EGFR

11 May 2020 15:49:18,937 INFO : 27% Done

11 May 2020 15:49:19,005 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:19,005 INFO : Inserting ERG_pan

11 May 2020 15:49:19,007 INFO : 34% Done

11 May 2020 15:49:19,177 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:19,177 INFO : Inserting FOLH1

11 May 2020 15:49:19,182 INFO : 42% Done

11 May 2020 15:49:19,406 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:19,406 INFO : Inserting MMP9

11 May 2020 15:49:19,411 INFO : 48% Done

11 May 2020 15:49:19,605 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:19,605 INFO : Inserting MUC1

11 May 2020 15:49:19,610 INFO : 54% Done

11 May 2020 15:49:19,805 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:19,805 INFO : Inserting NCOA2

11 May 2020 15:49:19,810 INFO : 59% Done

11 May 2020 15:49:19,967 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:19,967 INFO : Inserting PSA

11 May 2020 15:49:19,972 INFO : 67% Done

11 May 2020 15:49:20,201 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:20,201 INFO : Inserting SMAD4

11 May 2020 15:49:20,205 INFO : 72% Done

11 May 2020 15:49:20,359 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:20,359 INFO : Inserting SPINK1

11 May 2020 15:49:20,363 INFO : 75% Done

11 May 2020 15:49:20,515 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:20,515 INFO : Inserting SPRC

11 May 2020 15:49:20,519 INFO : 80% Done

11 May 2020 15:49:20,681 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:20,681 INFO : Inserting TFF3

11 May 2020 15:49:20,685 INFO : 86% Done

11 May 2020 15:49:20,937 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:20,937 INFO : Inserting TGFB1

11 May 2020 15:49:20,942 INFO : 91% Done

11 May 2020 15:49:21,101 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:21,102 INFO : Inserting VEGFA

11 May 2020 15:49:21,106 INFO : 98% Done

11 May 2020 15:49:21,290 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:21,290 INFO : Done parsing Skyline document.

11 May 2020 15:49:21,292 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:49:21,345 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:49:21,498 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:49:21,555 INFO : Cleaning up temp tables

11 May 2020 15:49:21,843 INFO : Completed import of Skyline document from CPDR-FFPE-ID-66_seg1_2020-01-28_09-52-46.sky.zip

11 May 2020 15:49:21,844 INFO : 100% Done

11 May 2020 15:49:21,855 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80056/CPDR-FFPE-ID-66_seg1_2020-01-28_09-52-46.sky.zip into the system

11 May 2020 15:49:21,856 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80055/CPDR-FFPE-ID-57_seg1_2020-01-28_09-52-35/CPDR-FFPE-ID-57_seg1.skyd into the system

11 May 2020 15:49:21,857 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80055/CPDR-FFPE-ID-57_seg1_2020-01-28_09-52-35/CPDR-FFPE-ID-57_seg1.skyd into the system

11 May 2020 15:49:21,857 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80055/CPDR-FFPE-ID-57_seg1_2020-01-28_09-52-35.sky.zip into the system

11 May 2020 15:49:21,860 INFO : Starting import from CPDR-FFPE-ID-57_seg1_2020-01-28_09-52-35.sky.zip

11 May 2020 15:49:21,868 INFO : Starting to import Skyline document from CPDR-FFPE-ID-57_seg1_2020-01-28_09-52-35.sky.zip

11 May 2020 15:49:21,886 INFO : Expanding CPDR-FFPE-ID-57_seg1.skyd

11 May 2020 15:49:22,505 INFO : Expanding CPDR-FFPE-ID-57_seg1.sky.view

11 May 2020 15:49:22,506 INFO : Expanding CPDR-FFPE-ID-57_seg1.sky

11 May 2020 15:49:22,518 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 15:49:22,523 INFO : 2% Done

11 May 2020 15:49:22,758 INFO : 4% Done

11 May 2020 15:49:22,758 INFO : Inserting ANXA2

11 May 2020 15:49:22,762 INFO : 10% Done

11 May 2020 15:49:22,836 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:22,836 INFO : Inserting CAMKK2

11 May 2020 15:49:22,838 INFO : 17% Done

11 May 2020 15:49:22,913 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:22,913 INFO : Inserting CCND1

11 May 2020 15:49:22,915 INFO : 23% Done

11 May 2020 15:49:22,984 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:22,984 INFO : Inserting EGFR

11 May 2020 15:49:22,985 INFO : 28% Done

11 May 2020 15:49:23,069 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:23,069 INFO : Inserting ERG_pan

11 May 2020 15:49:23,074 INFO : 35% Done

11 May 2020 15:49:23,266 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:23,266 INFO : Inserting FOLH1

11 May 2020 15:49:23,270 INFO : 41% Done

11 May 2020 15:49:23,470 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:23,470 INFO : Inserting MMP9

11 May 2020 15:49:23,475 INFO : 49% Done

11 May 2020 15:49:23,694 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:23,694 INFO : Inserting MUC1

11 May 2020 15:49:23,698 INFO : 54% Done

11 May 2020 15:49:23,829 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:23,829 INFO : Inserting NCOA2

11 May 2020 15:49:23,834 INFO : 59% Done

11 May 2020 15:49:23,970 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:23,971 INFO : Inserting PSA

11 May 2020 15:49:23,976 INFO : 65% Done

11 May 2020 15:49:24,216 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:24,216 INFO : Inserting SMAD4

11 May 2020 15:49:24,220 INFO : 70% Done

11 May 2020 15:49:24,351 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:24,351 INFO : Inserting SPINK1

11 May 2020 15:49:24,356 INFO : 75% Done

11 May 2020 15:49:24,533 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:24,533 INFO : Inserting SPRC

11 May 2020 15:49:24,538 INFO : 80% Done

11 May 2020 15:49:24,672 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:24,673 INFO : Inserting TFF3

11 May 2020 15:49:24,677 INFO : 87% Done

11 May 2020 15:49:24,863 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:24,863 INFO : Inserting TGFB1

11 May 2020 15:49:24,867 INFO : 91% Done

11 May 2020 15:49:25,004 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:25,004 INFO : Inserting VEGFA

11 May 2020 15:49:25,009 INFO : 98% Done

11 May 2020 15:49:25,232 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:25,232 INFO : Done parsing Skyline document.

11 May 2020 15:49:25,234 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:49:25,273 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:49:25,430 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:49:25,489 INFO : Cleaning up temp tables

11 May 2020 15:49:25,789 INFO : Completed import of Skyline document from CPDR-FFPE-ID-57_seg1_2020-01-28_09-52-35.sky.zip

11 May 2020 15:49:25,790 INFO : 100% Done

11 May 2020 15:49:25,802 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80055/CPDR-FFPE-ID-57_seg1_2020-01-28_09-52-35.sky.zip into the system

11 May 2020 15:49:25,802 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80108/CPDR-FFPE-ID-991_seg2_2020-01-28_10-17-39/CPDR-FFPE-ID-991_seg2.skyd into the system

11 May 2020 15:49:25,803 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80108/CPDR-FFPE-ID-991_seg2_2020-01-28_10-17-39/CPDR-FFPE-ID-991_seg2.skyd into the system

11 May 2020 15:49:25,804 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80108/CPDR-FFPE-ID-991_seg2_2020-01-28_10-17-39.sky.zip into the system

11 May 2020 15:49:25,807 INFO : Starting import from CPDR-FFPE-ID-991_seg2_2020-01-28_10-17-39.sky.zip

11 May 2020 15:49:25,815 INFO : Starting to import Skyline document from CPDR-FFPE-ID-991_seg2_2020-01-28_10-17-39.sky.zip

11 May 2020 15:49:25,832 INFO : Expanding CPDR-FFPE-ID-991_seg2.skyd

11 May 2020 15:49:26,373 INFO : Expanding CPDR-FFPE-ID-991_seg2.sky.view

11 May 2020 15:49:26,374 INFO : Expanding CPDR-FFPE-ID-991_seg2.sky

11 May 2020 15:49:26,423 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 15:49:26,426 INFO : 1% Done

11 May 2020 15:49:26,725 INFO : Inserting TFF3

11 May 2020 15:49:26,729 INFO : 2% Done

11 May 2020 15:49:26,814 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:26,814 INFO : Inserting AKT1

11 May 2020 15:49:26,816 INFO : 3% Done

11 May 2020 15:49:26,890 INFO : 4% Done

11 May 2020 15:49:26,973 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:26,973 INFO : Inserting AMACR

11 May 2020 15:49:26,976 INFO : 5% Done

11 May 2020 15:49:27,103 INFO : 6% Done

11 May 2020 15:49:27,301 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:27,301 INFO : Inserting ANDR

11 May 2020 15:49:27,305 INFO : 7% Done

11 May 2020 15:49:27,502 INFO : 8% Done

11 May 2020 15:49:27,684 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:27,685 INFO : 9% Done

11 May 2020 15:49:27,685 INFO : Inserting ANXA2

11 May 2020 15:49:27,690 INFO : 10% Done

11 May 2020 15:49:28,020 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:28,020 INFO : Inserting AURKA

11 May 2020 15:49:28,024 INFO : 11% Done

11 May 2020 15:49:28,207 INFO : 12% Done

11 May 2020 15:49:28,393 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:28,393 INFO : Inserting BRAF

11 May 2020 15:49:28,398 INFO : 13% Done

11 May 2020 15:49:28,584 INFO : 14% Done

11 May 2020 15:49:28,765 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:28,765 INFO : Inserting CAMKK2

11 May 2020 15:49:28,770 INFO : 15% Done

11 May 2020 15:49:29,004 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:29,004 INFO : Inserting CCND1

11 May 2020 15:49:29,008 INFO : 16% Done

11 May 2020 15:49:29,170 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:29,171 INFO : Inserting CDN1A

11 May 2020 15:49:29,175 INFO : 17% Done

11 May 2020 15:49:29,357 INFO : 18% Done

11 May 2020 15:49:29,537 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:29,537 INFO : Inserting CRISP3

11 May 2020 15:49:29,539 INFO : 19% Done

11 May 2020 15:49:29,624 INFO : 20% Done

11 May 2020 15:49:29,705 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:29,705 INFO : Inserting DCOR

11 May 2020 15:49:29,707 INFO : 21% Done

11 May 2020 15:49:29,782 INFO : 22% Done

11 May 2020 15:49:29,864 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:29,864 INFO : Inserting EGFR

11 May 2020 15:49:29,866 INFO : 23% Done

11 May 2020 15:49:29,943 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:29,944 INFO : 24% Done

11 May 2020 15:49:29,944 INFO : Inserting EZH2

11 May 2020 15:49:30,018 INFO : 25% Done

11 May 2020 15:49:30,101 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:30,101 INFO : Inserting FGFR1

11 May 2020 15:49:30,195 INFO : 26% Done

11 May 2020 15:49:30,277 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:30,277 INFO : Inserting FOLH1

11 May 2020 15:49:30,279 INFO : 27% Done

11 May 2020 15:49:30,374 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:30,375 INFO : Inserting HIF1A

11 May 2020 15:49:30,377 INFO : 28% Done

11 May 2020 15:49:30,469 INFO : 29% Done

11 May 2020 15:49:30,557 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:30,557 INFO : Inserting HPN

11 May 2020 15:49:30,559 INFO : 31% Done

11 May 2020 15:49:30,659 INFO : 32% Done

11 May 2020 15:49:30,758 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:30,759 INFO : Inserting HSPB1

11 May 2020 15:49:30,761 INFO : 33% Done

11 May 2020 15:49:30,876 INFO : 34% Done

11 May 2020 15:49:30,988 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:30,988 INFO : Inserting HXC6

11 May 2020 15:49:30,998 INFO : 35% Done

11 May 2020 15:49:31,164 INFO : 36% Done

11 May 2020 15:49:31,338 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:31,338 INFO : Inserting KLK11

11 May 2020 15:49:31,343 INFO : 37% Done

11 May 2020 15:49:31,530 INFO : 38% Done

11 May 2020 15:49:31,686 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:31,686 INFO : Inserting KLK2

11 May 2020 15:49:31,691 INFO : 40% Done

11 May 2020 15:49:32,057 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:32,058 INFO : Inserting MMP2

11 May 2020 15:49:32,062 INFO : 42% Done

11 May 2020 15:49:32,237 INFO : 43% Done

11 May 2020 15:49:32,523 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:32,523 INFO : Inserting MMP9

11 May 2020 15:49:32,528 INFO : 44% Done

11 May 2020 15:49:32,750 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:32,750 INFO : Inserting MUC1

11 May 2020 15:49:32,754 INFO : 45% Done

11 May 2020 15:49:33,005 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:33,005 INFO : Inserting MUC6

11 May 2020 15:49:33,010 INFO : 46% Done

11 May 2020 15:49:33,217 INFO : 47% Done

11 May 2020 15:49:33,450 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:33,450 INFO : Inserting MYC

11 May 2020 15:49:33,454 INFO : 48% Done

11 May 2020 15:49:33,653 INFO : 49% Done

11 May 2020 15:49:33,816 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:33,816 INFO : Inserting MYCN

11 May 2020 15:49:33,821 INFO : 50% Done

11 May 2020 15:49:34,004 INFO : 51% Done

11 May 2020 15:49:34,200 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:34,200 INFO : Inserting MYO6

11 May 2020 15:49:34,205 INFO : 52% Done

11 May 2020 15:49:34,429 INFO : 53% Done

11 May 2020 15:49:34,598 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:34,598 INFO : Inserting NCOA2

11 May 2020 15:49:34,619 INFO : 54% Done

11 May 2020 15:49:34,846 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:34,847 INFO : Inserting NPY

11 May 2020 15:49:34,851 INFO : 55% Done

11 May 2020 15:49:35,030 INFO : 56% Done

11 May 2020 15:49:35,230 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:35,230 INFO : Inserting O51E2

11 May 2020 15:49:35,235 INFO : 57% Done

11 May 2020 15:49:35,433 INFO : 58% Done

11 May 2020 15:49:35,626 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:35,626 INFO : Inserting OSTP

11 May 2020 15:49:35,630 INFO : 59% Done

11 May 2020 15:49:35,785 INFO : 60% Done

11 May 2020 15:49:35,960 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:35,960 INFO : Inserting P53

11 May 2020 15:49:35,964 INFO : 61% Done

11 May 2020 15:49:36,156 INFO : 62% Done

11 May 2020 15:49:36,341 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:36,341 INFO : Inserting PAFA

11 May 2020 15:49:36,345 INFO : 63% Done

11 May 2020 15:49:36,555 INFO : 64% Done

11 May 2020 15:49:36,722 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:36,722 INFO : Inserting PGFRB

11 May 2020 15:49:36,727 INFO : 65% Done

11 May 2020 15:49:36,916 INFO : 66% Done

11 May 2020 15:49:37,114 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:37,114 INFO : Inserting PK3CA

11 May 2020 15:49:37,119 INFO : 68% Done

11 May 2020 15:49:37,307 INFO : 69% Done

11 May 2020 15:49:37,465 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:37,465 INFO : Inserting RAF1

11 May 2020 15:49:37,469 INFO : 70% Done

11 May 2020 15:49:37,670 INFO : 71% Done

11 May 2020 15:49:37,896 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:37,897 INFO : Inserting SERPINI1

11 May 2020 15:49:37,902 INFO : 72% Done

11 May 2020 15:49:38,086 INFO : 73% Done

11 May 2020 15:49:38,269 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:38,269 INFO : Inserting SPINK1

11 May 2020 15:49:38,273 INFO : 74% Done

11 May 2020 15:49:38,498 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:38,498 INFO : Inserting SPRC

11 May 2020 15:49:38,688 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:38,688 INFO : Inserting TGFB1

11 May 2020 15:49:38,693 INFO : 75% Done

11 May 2020 15:49:38,880 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:38,880 INFO : Inserting TMPS2

11 May 2020 15:49:38,885 INFO : 76% Done

11 May 2020 15:49:39,087 INFO : 77% Done

11 May 2020 15:49:39,281 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:39,281 INFO : Inserting TPM2

11 May 2020 15:49:39,286 INFO : 78% Done

11 May 2020 15:49:39,512 INFO : 79% Done

11 May 2020 15:49:39,741 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:39,741 INFO : Inserting TWST1

11 May 2020 15:49:39,745 INFO : 80% Done

11 May 2020 15:49:39,941 INFO : 81% Done

11 May 2020 15:49:40,115 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:40,116 INFO : Inserting VEGFA

11 May 2020 15:49:40,120 INFO : 82% Done

11 May 2020 15:49:40,281 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:40,281 INFO : Inserting PSA

11 May 2020 15:49:40,286 INFO : 84% Done

11 May 2020 15:49:40,511 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:40,511 INFO : Inserting ERG_pan

11 May 2020 15:49:40,516 INFO : 85% Done

11 May 2020 15:49:40,692 INFO : 86% Done

11 May 2020 15:49:41,027 INFO : 87% Done

11 May 2020 15:49:41,224 INFO : 89% Done

11 May 2020 15:49:41,425 INFO : 90% Done

11 May 2020 15:49:41,625 DEBUG: Total peptides inserted: 6

11 May 2020 15:49:41,625 INFO : Inserting ETV1

11 May 2020 15:49:41,630 INFO : 91% Done

11 May 2020 15:49:41,835 INFO : 92% Done

11 May 2020 15:49:42,048 INFO : 93% Done

11 May 2020 15:49:42,223 DEBUG: Total peptides inserted: 3

11 May 2020 15:49:42,223 INFO : Inserting ERG8

11 May 2020 15:49:42,228 INFO : 94% Done

11 May 2020 15:49:42,415 INFO : 95% Done

11 May 2020 15:49:42,608 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:42,608 INFO : Inserting SMAD4

11 May 2020 15:49:42,612 INFO : 96% Done

11 May 2020 15:49:42,791 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:42,792 INFO : Inserting STAT3

11 May 2020 15:49:42,796 INFO : 97% Done

11 May 2020 15:49:43,002 INFO : 98% Done

11 May 2020 15:49:43,183 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:43,183 INFO : Done parsing Skyline document.

11 May 2020 15:49:43,185 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:49:43,318 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:49:44,252 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:49:44,546 INFO : Cleaning up temp tables

11 May 2020 15:49:44,929 INFO : Completed import of Skyline document from CPDR-FFPE-ID-991_seg2_2020-01-28_10-17-39.sky.zip

11 May 2020 15:49:44,931 INFO : 100% Done

11 May 2020 15:49:44,940 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80108/CPDR-FFPE-ID-991_seg2_2020-01-28_10-17-39.sky.zip into the system

11 May 2020 15:49:44,940 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80104/CPDR-FFPE-ID-500_seg2_2020-01-28_10-11-25/CPDR-FFPE-ID-500_seg2.skyd into the system

11 May 2020 15:49:44,941 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80104/CPDR-FFPE-ID-500_seg2_2020-01-28_10-11-25/CPDR-FFPE-ID-500_seg2.skyd into the system

11 May 2020 15:49:44,941 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80104/CPDR-FFPE-ID-500_seg2_2020-01-28_10-11-25.sky.zip into the system

11 May 2020 15:49:44,944 INFO : Starting import from CPDR-FFPE-ID-500_seg2_2020-01-28_10-11-25.sky.zip

11 May 2020 15:49:44,948 INFO : Starting to import Skyline document from CPDR-FFPE-ID-500_seg2_2020-01-28_10-11-25.sky.zip

11 May 2020 15:49:44,959 INFO : Expanding CPDR-FFPE-ID-500_seg2.skyd

11 May 2020 15:49:45,487 INFO : Expanding CPDR-FFPE-ID-500_seg2.sky.view

11 May 2020 15:49:45,488 INFO : Expanding CPDR-FFPE-ID-500_seg2.sky

11 May 2020 15:49:45,531 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 15:49:45,533 INFO : 1% Done

11 May 2020 15:49:46,634 INFO : Inserting TFF3

11 May 2020 15:49:46,645 INFO : 2% Done

11 May 2020 15:49:46,869 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:46,869 INFO : Inserting AKT1

11 May 2020 15:49:46,874 INFO : 3% Done

11 May 2020 15:49:47,069 INFO : 4% Done

11 May 2020 15:49:47,273 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:47,273 INFO : Inserting AMACR

11 May 2020 15:49:47,278 INFO : 5% Done

11 May 2020 15:49:47,489 INFO : 6% Done

11 May 2020 15:49:47,687 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:47,687 INFO : Inserting ANDR

11 May 2020 15:49:47,692 INFO : 7% Done

11 May 2020 15:49:47,886 INFO : 8% Done

11 May 2020 15:49:48,050 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:48,050 INFO : Inserting ANXA2

11 May 2020 15:49:48,055 INFO : 10% Done

11 May 2020 15:49:48,261 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:48,261 INFO : Inserting AURKA

11 May 2020 15:49:48,266 INFO : 11% Done

11 May 2020 15:49:48,453 INFO : 12% Done

11 May 2020 15:49:48,644 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:48,644 INFO : Inserting BRAF

11 May 2020 15:49:48,649 INFO : 13% Done

11 May 2020 15:49:48,816 INFO : 14% Done

11 May 2020 15:49:49,048 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:49,048 INFO : Inserting CAMKK2

11 May 2020 15:49:49,053 INFO : 15% Done

11 May 2020 15:49:49,268 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:49,268 INFO : Inserting CCND1

11 May 2020 15:49:49,272 INFO : 16% Done

11 May 2020 15:49:49,463 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:49,464 INFO : Inserting CDN1A

11 May 2020 15:49:49,468 INFO : 17% Done

11 May 2020 15:49:49,642 INFO : 18% Done

11 May 2020 15:49:49,825 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:49,825 INFO : Inserting CRISP3

11 May 2020 15:49:49,830 INFO : 19% Done

11 May 2020 15:49:50,040 INFO : 20% Done

11 May 2020 15:49:50,226 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:50,226 INFO : Inserting DCOR

11 May 2020 15:49:50,230 INFO : 21% Done

11 May 2020 15:49:50,409 INFO : 22% Done

11 May 2020 15:49:50,586 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:50,586 INFO : Inserting EGFR

11 May 2020 15:49:50,591 INFO : 23% Done

11 May 2020 15:49:50,805 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:50,805 INFO : Inserting EZH2

11 May 2020 15:49:50,809 INFO : 24% Done

11 May 2020 15:49:50,976 INFO : 25% Done

11 May 2020 15:49:51,141 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:51,142 INFO : Inserting FGFR1

11 May 2020 15:49:51,329 INFO : 26% Done

11 May 2020 15:49:51,505 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:51,505 INFO : Inserting FOLH1

11 May 2020 15:49:51,509 INFO : 27% Done

11 May 2020 15:49:51,706 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:51,706 INFO : Inserting HIF1A

11 May 2020 15:49:51,710 INFO : 28% Done

11 May 2020 15:49:51,899 INFO : 30% Done

11 May 2020 15:49:52,079 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:52,079 INFO : Inserting HPN

11 May 2020 15:49:52,083 INFO : 31% Done

11 May 2020 15:49:52,282 INFO : 32% Done

11 May 2020 15:49:52,486 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:52,486 INFO : Inserting HSPB1

11 May 2020 15:49:52,491 INFO : 33% Done

11 May 2020 15:49:52,711 INFO : 34% Done

11 May 2020 15:49:52,921 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:52,921 INFO : Inserting HXC6

11 May 2020 15:49:52,926 INFO : 35% Done

11 May 2020 15:49:53,103 INFO : 36% Done

11 May 2020 15:49:53,259 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:53,259 INFO : Inserting KLK11

11 May 2020 15:49:53,264 INFO : 38% Done

11 May 2020 15:49:53,648 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:53,648 INFO : 39% Done

11 May 2020 15:49:53,648 INFO : Inserting KLK2

11 May 2020 15:49:53,653 INFO : 40% Done

11 May 2020 15:49:53,869 INFO : 41% Done

11 May 2020 15:49:54,049 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:54,049 INFO : Inserting MMP2

11 May 2020 15:49:54,055 INFO : 42% Done

11 May 2020 15:49:54,224 INFO : 43% Done

11 May 2020 15:49:54,418 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:54,418 INFO : Inserting MMP9

11 May 2020 15:49:54,424 INFO : 44% Done

11 May 2020 15:49:54,664 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:54,664 INFO : Inserting MUC1

11 May 2020 15:49:54,669 INFO : 45% Done

11 May 2020 15:49:54,876 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:54,877 INFO : Inserting MUC6

11 May 2020 15:49:54,881 INFO : 46% Done

11 May 2020 15:49:55,052 INFO : 47% Done

11 May 2020 15:49:55,265 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:55,265 INFO : Inserting MYC

11 May 2020 15:49:55,269 INFO : 48% Done

11 May 2020 15:49:55,446 INFO : 49% Done

11 May 2020 15:49:55,622 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:55,622 INFO : Inserting MYCN

11 May 2020 15:49:55,627 INFO : 50% Done

11 May 2020 15:49:55,826 INFO : 51% Done

11 May 2020 15:49:56,018 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:56,018 INFO : Inserting MYO6

11 May 2020 15:49:56,023 INFO : 52% Done

11 May 2020 15:49:56,266 INFO : 53% Done

11 May 2020 15:49:56,440 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:56,440 INFO : Inserting NCOA2

11 May 2020 15:49:56,445 INFO : 55% Done

11 May 2020 15:49:56,642 DEBUG: Total peptides inserted: 1

11 May 2020 15:49:56,642 INFO : Inserting NPY

11 May 2020 15:49:56,647 INFO : 56% Done

11 May 2020 15:49:56,846 INFO : 57% Done

11 May 2020 15:49:57,030 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:57,030 INFO : Inserting O51E2

11 May 2020 15:49:57,035 INFO : 58% Done

11 May 2020 15:49:57,218 INFO : 59% Done

11 May 2020 15:49:57,385 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:57,385 INFO : Inserting OSTP

11 May 2020 15:49:57,389 INFO : 60% Done

11 May 2020 15:49:57,716 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:57,716 INFO : Inserting P53

11 May 2020 15:49:57,721 INFO : 61% Done

11 May 2020 15:49:57,898 INFO : 62% Done

11 May 2020 15:49:58,085 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:58,086 INFO : Inserting PAFA

11 May 2020 15:49:58,090 INFO : 63% Done

11 May 2020 15:49:58,255 INFO : 64% Done

11 May 2020 15:49:58,450 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:58,450 INFO : Inserting PGFRB

11 May 2020 15:49:58,454 INFO : 66% Done

11 May 2020 15:49:58,653 INFO : 67% Done

11 May 2020 15:49:58,857 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:58,857 INFO : Inserting PK3CA

11 May 2020 15:49:58,862 INFO : 68% Done

11 May 2020 15:49:59,051 INFO : 69% Done

11 May 2020 15:49:59,216 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:59,216 INFO : Inserting RAF1

11 May 2020 15:49:59,221 INFO : 70% Done

11 May 2020 15:49:59,411 INFO : 71% Done

11 May 2020 15:49:59,604 DEBUG: Total peptides inserted: 2

11 May 2020 15:49:59,605 INFO : Inserting SERPINI1

11 May 2020 15:49:59,610 INFO : 72% Done

11 May 2020 15:49:59,822 INFO : 73% Done

11 May 2020 15:50:00,003 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:00,004 INFO : Inserting SPINK1

11 May 2020 15:50:00,008 INFO : 74% Done

11 May 2020 15:50:00,181 DEBUG: Total peptides inserted: 1

11 May 2020 15:50:00,181 INFO : Inserting SPRC

11 May 2020 15:50:00,361 DEBUG: Total peptides inserted: 1

11 May 2020 15:50:00,361 INFO : Inserting TGFB1

11 May 2020 15:50:00,366 INFO : 75% Done

11 May 2020 15:50:00,562 DEBUG: Total peptides inserted: 1

11 May 2020 15:50:00,562 INFO : Inserting TMPS2

11 May 2020 15:50:00,567 INFO : 76% Done

11 May 2020 15:50:00,762 INFO : 77% Done

11 May 2020 15:50:00,960 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:00,960 INFO : Inserting TPM2

11 May 2020 15:50:00,965 INFO : 78% Done

11 May 2020 15:50:01,181 INFO : 80% Done

11 May 2020 15:50:01,401 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:01,402 INFO : Inserting TWST1

11 May 2020 15:50:01,585 INFO : 81% Done

11 May 2020 15:50:01,758 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:01,759 INFO : Inserting VEGFA

11 May 2020 15:50:01,763 INFO : 82% Done

11 May 2020 15:50:01,948 DEBUG: Total peptides inserted: 1

11 May 2020 15:50:01,949 INFO : Inserting PSA

11 May 2020 15:50:01,954 INFO : 84% Done

11 May 2020 15:50:02,206 DEBUG: Total peptides inserted: 1

11 May 2020 15:50:02,206 INFO : Inserting ERG_pan

11 May 2020 15:50:02,210 INFO : 85% Done

11 May 2020 15:50:02,394 INFO : 86% Done

11 May 2020 15:50:02,597 INFO : 87% Done

11 May 2020 15:50:02,775 INFO : 88% Done

11 May 2020 15:50:02,977 INFO : 89% Done

11 May 2020 15:50:03,385 INFO : 90% Done

11 May 2020 15:50:03,566 DEBUG: Total peptides inserted: 6

11 May 2020 15:50:03,567 INFO : Inserting ETV1

11 May 2020 15:50:03,571 INFO : 91% Done

11 May 2020 15:50:03,761 INFO : 92% Done

11 May 2020 15:50:03,929 INFO : 93% Done

11 May 2020 15:50:04,117 DEBUG: Total peptides inserted: 3

11 May 2020 15:50:04,118 INFO : Inserting ERG8

11 May 2020 15:50:04,122 INFO : 94% Done

11 May 2020 15:50:04,305 INFO : 95% Done

11 May 2020 15:50:04,492 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:04,492 INFO : Inserting SMAD4

11 May 2020 15:50:04,497 INFO : 96% Done

11 May 2020 15:50:04,746 DEBUG: Total peptides inserted: 1

11 May 2020 15:50:04,746 INFO : Inserting STAT3

11 May 2020 15:50:04,751 INFO : 97% Done

11 May 2020 15:50:04,951 INFO : 98% Done

11 May 2020 15:50:05,171 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:05,171 INFO : Done parsing Skyline document.

11 May 2020 15:50:05,173 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:50:05,309 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:50:06,086 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:50:06,240 INFO : Cleaning up temp tables

11 May 2020 15:50:06,659 INFO : Completed import of Skyline document from CPDR-FFPE-ID-500_seg2_2020-01-28_10-11-25.sky.zip

11 May 2020 15:50:06,661 INFO : 100% Done

11 May 2020 15:50:06,674 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80104/CPDR-FFPE-ID-500_seg2_2020-01-28_10-11-25.sky.zip into the system

11 May 2020 15:50:06,674 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80100/CPDR-FFPE-ID-304_seg2_2020-01-28_10-09-51/CPDR-FFPE-ID-304_seg2.skyd into the system

11 May 2020 15:50:06,675 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80100/CPDR-FFPE-ID-304_seg2_2020-01-28_10-09-51/CPDR-FFPE-ID-304_seg2.skyd into the system

11 May 2020 15:50:06,675 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80100/CPDR-FFPE-ID-304_seg2_2020-01-28_10-09-51.sky.zip into the system

11 May 2020 15:50:06,679 INFO : Starting import from CPDR-FFPE-ID-304_seg2_2020-01-28_10-09-51.sky.zip

11 May 2020 15:50:06,687 INFO : Starting to import Skyline document from CPDR-FFPE-ID-304_seg2_2020-01-28_10-09-51.sky.zip

11 May 2020 15:50:06,709 INFO : Expanding CPDR-FFPE-ID-304_seg2.skyd

11 May 2020 15:50:07,363 INFO : Expanding CPDR-FFPE-ID-304_seg2.sky.view

11 May 2020 15:50:07,363 INFO : Expanding CPDR-FFPE-ID-304_seg2.sky

11 May 2020 15:50:07,415 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 15:50:07,418 INFO : 1% Done

11 May 2020 15:50:07,895 INFO : Inserting TFF3

11 May 2020 15:50:07,940 INFO : 2% Done

11 May 2020 15:50:08,032 DEBUG: Total peptides inserted: 1

11 May 2020 15:50:08,032 INFO : Inserting AKT1

11 May 2020 15:50:08,037 INFO : 3% Done

11 May 2020 15:50:08,221 INFO : 4% Done

11 May 2020 15:50:08,435 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:08,436 INFO : Inserting AMACR

11 May 2020 15:50:08,441 INFO : 5% Done

11 May 2020 15:50:08,643 INFO : 6% Done

11 May 2020 15:50:08,831 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:08,832 INFO : Inserting ANDR

11 May 2020 15:50:08,836 INFO : 8% Done

11 May 2020 15:50:09,066 INFO : 9% Done

11 May 2020 15:50:09,244 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:09,244 INFO : Inserting ANXA2

11 May 2020 15:50:09,249 INFO : 10% Done

11 May 2020 15:50:09,682 DEBUG: Total peptides inserted: 1

11 May 2020 15:50:09,682 INFO : Inserting AURKA

11 May 2020 15:50:09,687 INFO : 11% Done

11 May 2020 15:50:09,887 INFO : 12% Done

11 May 2020 15:50:10,089 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:10,089 INFO : Inserting BRAF

11 May 2020 15:50:10,094 INFO : 13% Done

11 May 2020 15:50:10,273 INFO : 14% Done

11 May 2020 15:50:10,484 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:10,484 INFO : Inserting CAMKK2

11 May 2020 15:50:10,489 INFO : 15% Done

11 May 2020 15:50:10,743 DEBUG: Total peptides inserted: 1

11 May 2020 15:50:10,744 INFO : Inserting CCND1

11 May 2020 15:50:10,748 INFO : 16% Done

11 May 2020 15:50:10,933 DEBUG: Total peptides inserted: 1

11 May 2020 15:50:10,934 INFO : Inserting CDN1A

11 May 2020 15:50:10,938 INFO : 17% Done

11 May 2020 15:50:11,118 INFO : 18% Done

11 May 2020 15:50:11,308 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:11,308 INFO : Inserting CRISP3

11 May 2020 15:50:11,312 INFO : 19% Done

11 May 2020 15:50:11,518 INFO : 20% Done

11 May 2020 15:50:11,707 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:11,707 INFO : Inserting DCOR

11 May 2020 15:50:11,712 INFO : 22% Done

11 May 2020 15:50:11,908 INFO : 23% Done

11 May 2020 15:50:12,091 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:12,091 INFO : Inserting EGFR

11 May 2020 15:50:12,096 INFO : 24% Done

11 May 2020 15:50:12,300 DEBUG: Total peptides inserted: 1

11 May 2020 15:50:12,300 INFO : Inserting EZH2

11 May 2020 15:50:12,304 INFO : 25% Done

11 May 2020 15:50:12,648 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:12,648 INFO : Inserting FGFR1

11 May 2020 15:50:12,652 INFO : 26% Done

11 May 2020 15:50:12,843 INFO : 27% Done

11 May 2020 15:50:13,020 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:13,020 INFO : Inserting FOLH1

11 May 2020 15:50:13,025 INFO : 28% Done

11 May 2020 15:50:13,208 DEBUG: Total peptides inserted: 1

11 May 2020 15:50:13,209 INFO : Inserting HIF1A

11 May 2020 15:50:13,213 INFO : 29% Done

11 May 2020 15:50:13,392 INFO : 30% Done

11 May 2020 15:50:13,581 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:13,581 INFO : Inserting HPN

11 May 2020 15:50:13,586 INFO : 31% Done

11 May 2020 15:50:13,774 INFO : 32% Done

11 May 2020 15:50:13,995 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:13,995 INFO : Inserting HSPB1

11 May 2020 15:50:14,000 INFO : 33% Done

11 May 2020 15:50:14,274 INFO : 34% Done

11 May 2020 15:50:14,498 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:14,498 INFO : Inserting HXC6

11 May 2020 15:50:14,503 INFO : 36% Done

11 May 2020 15:50:14,850 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:14,851 INFO : Inserting KLK11

11 May 2020 15:50:14,855 INFO : 37% Done

11 May 2020 15:50:15,063 INFO : 38% Done

11 May 2020 15:50:15,229 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:15,229 INFO : Inserting KLK2

11 May 2020 15:50:15,234 INFO : 40% Done

11 May 2020 15:50:15,456 INFO : 41% Done

11 May 2020 15:50:15,627 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:15,628 INFO : Inserting MMP2

11 May 2020 15:50:15,632 INFO : 42% Done

11 May 2020 15:50:15,840 INFO : 43% Done

11 May 2020 15:50:16,074 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:16,074 INFO : Inserting MMP9

11 May 2020 15:50:16,079 INFO : 44% Done

11 May 2020 15:50:16,314 DEBUG: Total peptides inserted: 1

11 May 2020 15:50:16,314 INFO : Inserting MUC1

11 May 2020 15:50:16,319 INFO : 45% Done

11 May 2020 15:50:16,503 DEBUG: Total peptides inserted: 1

11 May 2020 15:50:16,503 INFO : Inserting MUC6

11 May 2020 15:50:16,507 INFO : 46% Done

11 May 2020 15:50:16,681 INFO : 47% Done

11 May 2020 15:50:16,855 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:16,856 INFO : Inserting MYC

11 May 2020 15:50:16,860 INFO : 48% Done

11 May 2020 15:50:17,042 INFO : 49% Done

11 May 2020 15:50:17,218 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:17,218 INFO : Inserting MYCN

11 May 2020 15:50:17,222 INFO : 50% Done

11 May 2020 15:50:17,417 INFO : 51% Done

11 May 2020 15:50:17,599 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:17,599 INFO : Inserting MYO6

11 May 2020 15:50:17,604 INFO : 52% Done

11 May 2020 15:50:17,818 INFO : 53% Done

11 May 2020 15:50:17,979 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:17,979 INFO : Inserting NCOA2

11 May 2020 15:50:17,984 INFO : 54% Done

11 May 2020 15:50:18,177 DEBUG: Total peptides inserted: 1

11 May 2020 15:50:18,177 INFO : Inserting NPY

11 May 2020 15:50:18,182 INFO : 55% Done

11 May 2020 15:50:18,363 INFO : 56% Done

11 May 2020 15:50:18,563 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:18,563 INFO : Inserting O51E2

11 May 2020 15:50:18,568 INFO : 57% Done

11 May 2020 15:50:18,804 INFO : 58% Done

11 May 2020 15:50:19,011 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:19,011 INFO : Inserting OSTP

11 May 2020 15:50:19,015 INFO : 59% Done

11 May 2020 15:50:19,179 INFO : 60% Done

11 May 2020 15:50:19,359 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:19,359 INFO : Inserting P53

11 May 2020 15:50:19,363 INFO : 61% Done

11 May 2020 15:50:19,530 INFO : 62% Done

11 May 2020 15:50:19,712 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:19,712 INFO : Inserting PAFA

11 May 2020 15:50:19,717 INFO : 63% Done

11 May 2020 15:50:19,932 INFO : 64% Done

11 May 2020 15:50:20,094 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:20,094 INFO : Inserting PGFRB

11 May 2020 15:50:20,099 INFO : 65% Done

11 May 2020 15:50:20,284 INFO : 66% Done

11 May 2020 15:50:20,481 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:20,481 INFO : Inserting PK3CA

11 May 2020 15:50:20,486 INFO : 67% Done

11 May 2020 15:50:20,697 INFO : 68% Done

11 May 2020 15:50:20,885 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:20,885 INFO : Inserting RAF1

11 May 2020 15:50:20,890 INFO : 70% Done

11 May 2020 15:50:21,148 INFO : 71% Done

11 May 2020 15:50:21,330 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:21,330 INFO : Inserting SERPINI1

11 May 2020 15:50:21,335 INFO : 72% Done

11 May 2020 15:50:21,585 INFO : 73% Done

11 May 2020 15:50:21,770 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:21,770 INFO : Inserting SPINK1

11 May 2020 15:50:21,775 INFO : 74% Done

11 May 2020 15:50:21,963 DEBUG: Total peptides inserted: 1

11 May 2020 15:50:21,963 INFO : Inserting SPRC

11 May 2020 15:50:22,180 DEBUG: Total peptides inserted: 1

11 May 2020 15:50:22,180 INFO : Inserting TGFB1

11 May 2020 15:50:22,185 INFO : 75% Done

11 May 2020 15:50:22,383 DEBUG: Total peptides inserted: 1

11 May 2020 15:50:22,383 INFO : Inserting TMPS2

11 May 2020 15:50:22,388 INFO : 76% Done

11 May 2020 15:50:22,616 INFO : 77% Done

11 May 2020 15:50:22,825 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:22,825 INFO : Inserting TPM2

11 May 2020 15:50:22,830 INFO : 78% Done

11 May 2020 15:50:23,041 INFO : 79% Done

11 May 2020 15:50:23,297 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:23,297 INFO : Inserting TWST1

11 May 2020 15:50:23,302 INFO : 80% Done

11 May 2020 15:50:23,481 INFO : 81% Done

11 May 2020 15:50:23,672 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:23,672 INFO : Inserting VEGFA

11 May 2020 15:50:23,677 INFO : 82% Done

11 May 2020 15:50:23,848 DEBUG: Total peptides inserted: 1

11 May 2020 15:50:23,848 INFO : Inserting PSA

11 May 2020 15:50:23,853 INFO : 84% Done

11 May 2020 15:50:24,103 DEBUG: Total peptides inserted: 1

11 May 2020 15:50:24,103 INFO : Inserting ERG_pan

11 May 2020 15:50:24,107 INFO : 85% Done

11 May 2020 15:50:24,295 INFO : 86% Done

11 May 2020 15:50:24,476 INFO : 87% Done

11 May 2020 15:50:24,655 INFO : 88% Done

11 May 2020 15:50:24,849 INFO : 89% Done

11 May 2020 15:50:25,035 INFO : 90% Done

11 May 2020 15:50:25,226 DEBUG: Total peptides inserted: 6

11 May 2020 15:50:25,226 INFO : Inserting ETV1

11 May 2020 15:50:25,231 INFO : 91% Done

11 May 2020 15:50:25,440 INFO : 92% Done

11 May 2020 15:50:25,604 INFO : 93% Done

11 May 2020 15:50:25,795 DEBUG: Total peptides inserted: 3

11 May 2020 15:50:25,795 INFO : Inserting ERG8

11 May 2020 15:50:25,800 INFO : 94% Done

11 May 2020 15:50:25,984 INFO : 95% Done

11 May 2020 15:50:26,172 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:26,172 INFO : Inserting SMAD4

11 May 2020 15:50:26,177 INFO : 96% Done

11 May 2020 15:50:26,404 DEBUG: Total peptides inserted: 1

11 May 2020 15:50:26,404 INFO : Inserting STAT3

11 May 2020 15:50:26,409 INFO : 97% Done

11 May 2020 15:50:26,628 INFO : 98% Done

11 May 2020 15:50:26,814 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:26,814 INFO : Done parsing Skyline document.

11 May 2020 15:50:26,816 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:50:26,953 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:50:27,654 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:50:27,812 INFO : Cleaning up temp tables

11 May 2020 15:50:27,827 INFO : Completed import of Skyline document from CPDR-FFPE-ID-304_seg2_2020-01-28_10-09-51.sky.zip

11 May 2020 15:50:27,829 INFO : 100% Done

11 May 2020 15:50:27,836 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80100/CPDR-FFPE-ID-304_seg2_2020-01-28_10-09-51.sky.zip into the system

11 May 2020 15:50:27,836 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80099/CPDR-FFPE-ID-167_seg2_2020-01-28_10-09-20/CPDR-FFPE-ID-167_seg2.skyd into the system

11 May 2020 15:50:27,837 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80099/CPDR-FFPE-ID-167_seg2_2020-01-28_10-09-20/CPDR-FFPE-ID-167_seg2.skyd into the system

11 May 2020 15:50:27,838 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80099/CPDR-FFPE-ID-167_seg2_2020-01-28_10-09-20.sky.zip into the system

11 May 2020 15:50:27,839 INFO : Starting import from CPDR-FFPE-ID-167_seg2_2020-01-28_10-09-20.sky.zip

11 May 2020 15:50:27,843 INFO : Starting to import Skyline document from CPDR-FFPE-ID-167_seg2_2020-01-28_10-09-20.sky.zip

11 May 2020 15:50:27,852 INFO : Expanding CPDR-FFPE-ID-167_seg2.skyd

11 May 2020 15:50:28,143 INFO : Expanding CPDR-FFPE-ID-167_seg2.sky.view

11 May 2020 15:50:28,144 INFO : Expanding CPDR-FFPE-ID-167_seg2.sky

11 May 2020 15:50:28,191 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 15:50:28,195 INFO : 1% Done

11 May 2020 15:50:28,627 INFO : Inserting TFF3

11 May 2020 15:50:28,631 INFO : 2% Done

11 May 2020 15:50:28,700 DEBUG: Total peptides inserted: 1

11 May 2020 15:50:28,700 INFO : Inserting AKT1

11 May 2020 15:50:28,702 INFO : 3% Done

11 May 2020 15:50:28,769 INFO : 4% Done

11 May 2020 15:50:28,854 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:28,854 INFO : Inserting AMACR

11 May 2020 15:50:28,856 INFO : 5% Done

11 May 2020 15:50:28,940 INFO : 6% Done

11 May 2020 15:50:29,015 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:29,015 INFO : Inserting ANDR

11 May 2020 15:50:29,017 INFO : 7% Done

11 May 2020 15:50:29,186 INFO : 8% Done

11 May 2020 15:50:29,357 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:29,357 INFO : Inserting ANXA2

11 May 2020 15:50:29,361 INFO : 9% Done

11 May 2020 15:50:29,559 DEBUG: Total peptides inserted: 1

11 May 2020 15:50:29,559 INFO : Inserting AURKA

11 May 2020 15:50:29,564 INFO : 10% Done

11 May 2020 15:50:29,739 INFO : 12% Done

11 May 2020 15:50:29,916 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:29,916 INFO : Inserting BRAF

11 May 2020 15:50:29,920 INFO : 13% Done

11 May 2020 15:50:30,095 INFO : 14% Done

11 May 2020 15:50:30,268 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:30,268 INFO : Inserting CAMKK2

11 May 2020 15:50:30,273 INFO : 15% Done

11 May 2020 15:50:30,548 DEBUG: Total peptides inserted: 1

11 May 2020 15:50:30,548 INFO : Inserting CCND1

11 May 2020 15:50:30,552 INFO : 16% Done

11 May 2020 15:50:30,730 DEBUG: Total peptides inserted: 1

11 May 2020 15:50:30,731 INFO : Inserting CDN1A

11 May 2020 15:50:30,735 INFO : 17% Done

11 May 2020 15:50:30,906 INFO : 18% Done

11 May 2020 15:50:31,096 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:31,096 INFO : Inserting CRISP3

11 May 2020 15:50:31,101 INFO : 19% Done

11 May 2020 15:50:31,293 INFO : 20% Done

11 May 2020 15:50:31,476 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:31,476 INFO : Inserting DCOR

11 May 2020 15:50:31,480 INFO : 21% Done

11 May 2020 15:50:31,675 INFO : 22% Done

11 May 2020 15:50:31,846 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:31,847 INFO : Inserting EGFR

11 May 2020 15:50:31,851 INFO : 23% Done

11 May 2020 15:50:32,040 DEBUG: Total peptides inserted: 1

11 May 2020 15:50:32,040 INFO : Inserting EZH2

11 May 2020 15:50:32,044 INFO : 24% Done

11 May 2020 15:50:32,222 INFO : 25% Done

11 May 2020 15:50:32,394 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:32,394 INFO : Inserting FGFR1

11 May 2020 15:50:32,563 INFO : 26% Done

11 May 2020 15:50:32,711 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:32,711 INFO : Inserting FOLH1

11 May 2020 15:50:32,716 INFO : 27% Done

11 May 2020 15:50:32,887 DEBUG: Total peptides inserted: 1

11 May 2020 15:50:32,887 INFO : Inserting HIF1A

11 May 2020 15:50:32,891 INFO : 28% Done

11 May 2020 15:50:33,070 INFO : 29% Done

11 May 2020 15:50:33,249 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:33,249 INFO : Inserting HPN

11 May 2020 15:50:33,254 INFO : 30% Done

11 May 2020 15:50:33,434 INFO : 32% Done

11 May 2020 15:50:33,636 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:33,636 INFO : Inserting HSPB1

11 May 2020 15:50:33,641 INFO : 33% Done

11 May 2020 15:50:33,839 INFO : 34% Done

11 May 2020 15:50:34,046 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:34,046 INFO : Inserting HXC6

11 May 2020 15:50:34,051 INFO : 35% Done

11 May 2020 15:50:34,226 INFO : 36% Done

11 May 2020 15:50:34,414 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:34,414 INFO : Inserting KLK11

11 May 2020 15:50:34,419 INFO : 37% Done

11 May 2020 15:50:34,648 INFO : 38% Done

11 May 2020 15:50:34,838 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:34,838 INFO : Inserting KLK2

11 May 2020 15:50:34,843 INFO : 39% Done

11 May 2020 15:50:35,034 INFO : 40% Done

11 May 2020 15:50:35,229 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:35,229 INFO : Inserting MMP2

11 May 2020 15:50:35,234 INFO : 41% Done

11 May 2020 15:50:35,434 INFO : 43% Done

11 May 2020 15:50:35,639 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:35,639 INFO : Inserting MMP9

11 May 2020 15:50:35,644 INFO : 44% Done

11 May 2020 15:50:35,847 DEBUG: Total peptides inserted: 1

11 May 2020 15:50:35,848 INFO : Inserting MUC1

11 May 2020 15:50:35,852 INFO : 45% Done

11 May 2020 15:50:36,044 DEBUG: Total peptides inserted: 1

11 May 2020 15:50:36,044 INFO : Inserting MUC6

11 May 2020 15:50:36,049 INFO : 46% Done

11 May 2020 15:50:36,227 INFO : 47% Done

11 May 2020 15:50:36,422 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:36,422 INFO : Inserting MYC

11 May 2020 15:50:36,427 INFO : 48% Done

11 May 2020 15:50:36,614 INFO : 49% Done

11 May 2020 15:50:36,800 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:36,800 INFO : Inserting MYCN

11 May 2020 15:50:36,805 INFO : 50% Done

11 May 2020 15:50:36,999 INFO : 51% Done

11 May 2020 15:50:37,214 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:37,214 INFO : Inserting MYO6

11 May 2020 15:50:37,219 INFO : 52% Done

11 May 2020 15:50:37,440 INFO : 53% Done

11 May 2020 15:50:37,620 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:37,620 INFO : Inserting NCOA2

11 May 2020 15:50:37,624 INFO : 54% Done

11 May 2020 15:50:37,799 DEBUG: Total peptides inserted: 1

11 May 2020 15:50:37,799 INFO : Inserting NPY

11 May 2020 15:50:37,803 INFO : 55% Done

11 May 2020 15:50:37,993 INFO : 56% Done

11 May 2020 15:50:38,178 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:38,178 INFO : Inserting O51E2

11 May 2020 15:50:38,182 INFO : 57% Done

11 May 2020 15:50:38,357 INFO : 58% Done

11 May 2020 15:50:38,533 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:38,533 INFO : Inserting OSTP

11 May 2020 15:50:38,537 INFO : 59% Done

11 May 2020 15:50:38,698 INFO : 60% Done

11 May 2020 15:50:38,857 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:38,857 INFO : Inserting P53

11 May 2020 15:50:38,861 INFO : 61% Done

11 May 2020 15:50:39,038 INFO : 62% Done

11 May 2020 15:50:39,215 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:39,215 INFO : Inserting PAFA

11 May 2020 15:50:39,220 INFO : 63% Done

11 May 2020 15:50:39,402 INFO : 64% Done

11 May 2020 15:50:39,568 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:39,568 INFO : Inserting PGFRB

11 May 2020 15:50:39,573 INFO : 65% Done

11 May 2020 15:50:39,759 INFO : 66% Done

11 May 2020 15:50:39,935 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:39,935 INFO : Inserting PK3CA

11 May 2020 15:50:39,940 INFO : 68% Done

11 May 2020 15:50:40,130 INFO : 69% Done

11 May 2020 15:50:40,301 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:40,301 INFO : Inserting RAF1

11 May 2020 15:50:40,306 INFO : 70% Done

11 May 2020 15:50:40,496 INFO : 71% Done

11 May 2020 15:50:40,691 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:40,691 INFO : Inserting SERPINI1

11 May 2020 15:50:40,696 INFO : 72% Done

11 May 2020 15:50:40,875 INFO : 73% Done

11 May 2020 15:50:41,053 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:41,054 INFO : Inserting SPINK1

11 May 2020 15:50:41,058 INFO : 74% Done

11 May 2020 15:50:41,218 DEBUG: Total peptides inserted: 1

11 May 2020 15:50:41,218 INFO : Inserting SPRC

11 May 2020 15:50:41,383 DEBUG: Total peptides inserted: 1

11 May 2020 15:50:41,384 INFO : Inserting TGFB1

11 May 2020 15:50:41,389 INFO : 75% Done

11 May 2020 15:50:41,578 DEBUG: Total peptides inserted: 1

11 May 2020 15:50:41,578 INFO : Inserting TMPS2

11 May 2020 15:50:41,583 INFO : 76% Done

11 May 2020 15:50:41,781 INFO : 77% Done

11 May 2020 15:50:41,965 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:41,965 INFO : Inserting TPM2

11 May 2020 15:50:41,969 INFO : 78% Done

11 May 2020 15:50:42,130 INFO : 79% Done

11 May 2020 15:50:42,310 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:42,311 INFO : Inserting TWST1

11 May 2020 15:50:42,314 INFO : 80% Done

11 May 2020 15:50:42,473 INFO : 81% Done

11 May 2020 15:50:42,609 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:42,609 INFO : Inserting VEGFA

11 May 2020 15:50:42,613 INFO : 82% Done

11 May 2020 15:50:42,763 DEBUG: Total peptides inserted: 1

11 May 2020 15:50:42,764 INFO : Inserting PSA

11 May 2020 15:50:42,768 INFO : 83% Done

11 May 2020 15:50:42,947 DEBUG: Total peptides inserted: 1

11 May 2020 15:50:42,947 INFO : Inserting ERG_pan

11 May 2020 15:50:42,950 INFO : 84% Done

11 May 2020 15:50:43,096 INFO : 85% Done

11 May 2020 15:50:43,252 INFO : 86% Done

11 May 2020 15:50:43,399 INFO : 87% Done

11 May 2020 15:50:43,559 INFO : 89% Done

11 May 2020 15:50:43,718 INFO : 90% Done

11 May 2020 15:50:43,880 DEBUG: Total peptides inserted: 6

11 May 2020 15:50:43,880 INFO : Inserting ETV1

11 May 2020 15:50:43,884 INFO : 91% Done

11 May 2020 15:50:44,040 INFO : 92% Done

11 May 2020 15:50:44,188 INFO : 93% Done

11 May 2020 15:50:44,358 DEBUG: Total peptides inserted: 3

11 May 2020 15:50:44,359 INFO : Inserting ERG8

11 May 2020 15:50:44,363 INFO : 94% Done

11 May 2020 15:50:44,517 INFO : 95% Done

11 May 2020 15:50:44,679 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:44,680 INFO : Inserting SMAD4

11 May 2020 15:50:44,683 INFO : 96% Done

11 May 2020 15:50:44,830 DEBUG: Total peptides inserted: 1

11 May 2020 15:50:44,830 INFO : Inserting STAT3

11 May 2020 15:50:44,834 INFO : 97% Done

11 May 2020 15:50:44,985 INFO : 98% Done

11 May 2020 15:50:45,147 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:45,147 INFO : Done parsing Skyline document.

11 May 2020 15:50:45,149 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:50:45,277 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:50:46,074 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:50:46,219 INFO : Cleaning up temp tables

11 May 2020 15:50:46,221 INFO : Completed import of Skyline document from CPDR-FFPE-ID-167_seg2_2020-01-28_10-09-20.sky.zip

11 May 2020 15:50:46,235 INFO : 100% Done

11 May 2020 15:50:46,241 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80099/CPDR-FFPE-ID-167_seg2_2020-01-28_10-09-20.sky.zip into the system

11 May 2020 15:50:46,241 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80097/CPDR-FFPE-ID-152_seg2_2020-01-28_10-08-15/CPDR-FFPE-ID-152_seg2.skyd into the system

11 May 2020 15:50:46,242 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80097/CPDR-FFPE-ID-152_seg2_2020-01-28_10-08-15/CPDR-FFPE-ID-152_seg2.skyd into the system

11 May 2020 15:50:46,242 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80097/CPDR-FFPE-ID-152_seg2_2020-01-28_10-08-15.sky.zip into the system

11 May 2020 15:50:46,244 INFO : Starting import from CPDR-FFPE-ID-152_seg2_2020-01-28_10-08-15.sky.zip

11 May 2020 15:50:46,247 INFO : Starting to import Skyline document from CPDR-FFPE-ID-152_seg2_2020-01-28_10-08-15.sky.zip

11 May 2020 15:50:46,255 INFO : Expanding CPDR-FFPE-ID-152_seg2.skyd

11 May 2020 15:50:46,472 INFO : Expanding CPDR-FFPE-ID-152_seg2.sky.view

11 May 2020 15:50:46,473 INFO : Expanding CPDR-FFPE-ID-152_seg2.sky

11 May 2020 15:50:46,493 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 15:50:46,495 INFO : 1% Done

11 May 2020 15:50:47,154 INFO : Inserting TFF3

11 May 2020 15:50:47,332 DEBUG: Total peptides inserted: 1

11 May 2020 15:50:47,332 INFO : 2% Done

11 May 2020 15:50:47,333 INFO : Inserting AKT1

11 May 2020 15:50:47,337 INFO : 3% Done

11 May 2020 15:50:47,528 INFO : 4% Done

11 May 2020 15:50:47,736 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:47,737 INFO : Inserting AMACR

11 May 2020 15:50:47,742 INFO : 5% Done

11 May 2020 15:50:47,952 INFO : 6% Done

11 May 2020 15:50:48,148 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:48,148 INFO : Inserting ANDR

11 May 2020 15:50:48,153 INFO : 7% Done

11 May 2020 15:50:48,344 INFO : 8% Done

11 May 2020 15:50:48,530 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:48,530 INFO : Inserting ANXA2

11 May 2020 15:50:48,535 INFO : 10% Done

11 May 2020 15:50:48,738 DEBUG: Total peptides inserted: 1

11 May 2020 15:50:48,738 INFO : Inserting AURKA

11 May 2020 15:50:48,743 INFO : 11% Done

11 May 2020 15:50:48,916 INFO : 12% Done

11 May 2020 15:50:49,116 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:49,116 INFO : Inserting BRAF

11 May 2020 15:50:49,121 INFO : 13% Done

11 May 2020 15:50:49,309 INFO : 14% Done

11 May 2020 15:50:49,504 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:49,504 INFO : Inserting CAMKK2

11 May 2020 15:50:49,509 INFO : 15% Done

11 May 2020 15:50:49,710 DEBUG: Total peptides inserted: 1

11 May 2020 15:50:49,711 INFO : Inserting CCND1

11 May 2020 15:50:49,715 INFO : 16% Done

11 May 2020 15:50:49,882 DEBUG: Total peptides inserted: 1

11 May 2020 15:50:49,882 INFO : Inserting CDN1A

11 May 2020 15:50:49,887 INFO : 17% Done

11 May 2020 15:50:50,073 INFO : 18% Done

11 May 2020 15:50:50,273 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:50,273 INFO : Inserting CRISP3

11 May 2020 15:50:50,278 INFO : 19% Done

11 May 2020 15:50:50,472 INFO : 20% Done

11 May 2020 15:50:50,665 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:50,665 INFO : Inserting DCOR

11 May 2020 15:50:50,669 INFO : 21% Done

11 May 2020 15:50:50,847 INFO : 22% Done

11 May 2020 15:50:51,030 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:51,030 INFO : Inserting EGFR

11 May 2020 15:50:51,034 INFO : 24% Done

11 May 2020 15:50:51,211 DEBUG: Total peptides inserted: 1

11 May 2020 15:50:51,211 INFO : Inserting EZH2

11 May 2020 15:50:51,215 INFO : 25% Done

11 May 2020 15:50:51,558 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:51,558 INFO : Inserting FGFR1

11 May 2020 15:50:51,563 INFO : 26% Done

11 May 2020 15:50:51,918 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:51,918 INFO : Inserting FOLH1

11 May 2020 15:50:51,923 INFO : 28% Done

11 May 2020 15:50:52,132 DEBUG: Total peptides inserted: 1

11 May 2020 15:50:52,132 INFO : Inserting HIF1A

11 May 2020 15:50:52,136 INFO : 29% Done

11 May 2020 15:50:52,309 INFO : 30% Done

11 May 2020 15:50:52,493 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:52,493 INFO : Inserting HPN

11 May 2020 15:50:52,498 INFO : 31% Done

11 May 2020 15:50:52,682 INFO : 32% Done

11 May 2020 15:50:52,878 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:52,879 INFO : Inserting HSPB1

11 May 2020 15:50:52,883 INFO : 33% Done

11 May 2020 15:50:53,096 INFO : 34% Done

11 May 2020 15:50:53,305 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:53,306 INFO : Inserting HXC6

11 May 2020 15:50:53,310 INFO : 35% Done

11 May 2020 15:50:53,509 INFO : 36% Done

11 May 2020 15:50:53,688 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:53,688 INFO : Inserting KLK11

11 May 2020 15:50:53,693 INFO : 38% Done

11 May 2020 15:50:53,903 INFO : 39% Done

11 May 2020 15:50:54,087 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:54,087 INFO : Inserting KLK2

11 May 2020 15:50:54,092 INFO : 40% Done

11 May 2020 15:50:54,274 INFO : 41% Done

11 May 2020 15:50:54,450 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:54,450 INFO : Inserting MMP2

11 May 2020 15:50:54,454 INFO : 42% Done

11 May 2020 15:50:54,644 INFO : 43% Done

11 May 2020 15:50:54,825 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:54,825 INFO : Inserting MMP9

11 May 2020 15:50:54,830 INFO : 44% Done

11 May 2020 15:50:55,024 DEBUG: Total peptides inserted: 1

11 May 2020 15:50:55,024 INFO : Inserting MUC1

11 May 2020 15:50:55,029 INFO : 45% Done

11 May 2020 15:50:55,210 DEBUG: Total peptides inserted: 1

11 May 2020 15:50:55,210 INFO : Inserting MUC6

11 May 2020 15:50:55,214 INFO : 46% Done

11 May 2020 15:50:55,380 INFO : 47% Done

11 May 2020 15:50:55,558 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:55,558 INFO : Inserting MYC

11 May 2020 15:50:55,563 INFO : 48% Done

11 May 2020 15:50:55,727 INFO : 49% Done

11 May 2020 15:50:55,888 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:55,888 INFO : Inserting MYCN

11 May 2020 15:50:55,892 INFO : 50% Done

11 May 2020 15:50:56,069 INFO : 51% Done

11 May 2020 15:50:56,238 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:56,238 INFO : Inserting MYO6

11 May 2020 15:50:56,243 INFO : 52% Done

11 May 2020 15:50:56,430 INFO : 53% Done

11 May 2020 15:50:56,590 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:56,591 INFO : 54% Done

11 May 2020 15:50:56,591 INFO : Inserting NCOA2

11 May 2020 15:50:56,595 INFO : 55% Done

11 May 2020 15:50:56,776 DEBUG: Total peptides inserted: 1

11 May 2020 15:50:56,777 INFO : Inserting NPY

11 May 2020 15:50:56,781 INFO : 56% Done

11 May 2020 15:50:56,943 INFO : 57% Done

11 May 2020 15:50:57,125 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:57,125 INFO : Inserting O51E2

11 May 2020 15:50:57,130 INFO : 58% Done

11 May 2020 15:50:57,316 INFO : 59% Done

11 May 2020 15:50:57,499 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:57,499 INFO : Inserting OSTP

11 May 2020 15:50:57,504 INFO : 60% Done

11 May 2020 15:50:57,673 INFO : 61% Done

11 May 2020 15:50:57,849 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:57,849 INFO : Inserting P53

11 May 2020 15:50:57,853 INFO : 62% Done

11 May 2020 15:50:58,036 INFO : 63% Done

11 May 2020 15:50:58,215 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:58,215 INFO : Inserting PAFA

11 May 2020 15:50:58,220 INFO : 64% Done

11 May 2020 15:50:58,391 INFO : 65% Done

11 May 2020 15:50:58,545 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:58,545 INFO : Inserting PGFRB

11 May 2020 15:50:58,550 INFO : 66% Done

11 May 2020 15:50:58,733 INFO : 67% Done

11 May 2020 15:50:58,948 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:58,948 INFO : Inserting PK3CA

11 May 2020 15:50:58,953 INFO : 68% Done

11 May 2020 15:50:59,142 INFO : 69% Done

11 May 2020 15:50:59,323 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:59,323 INFO : Inserting RAF1

11 May 2020 15:50:59,328 INFO : 70% Done

11 May 2020 15:50:59,511 INFO : 71% Done

11 May 2020 15:50:59,714 DEBUG: Total peptides inserted: 2

11 May 2020 15:50:59,714 INFO : Inserting SERPINI1

11 May 2020 15:50:59,720 INFO : 72% Done

11 May 2020 15:50:59,911 INFO : 73% Done

11 May 2020 15:51:00,091 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:00,091 INFO : Inserting SPINK1

11 May 2020 15:51:00,095 INFO : 74% Done

11 May 2020 15:51:00,268 DEBUG: Total peptides inserted: 1

11 May 2020 15:51:00,268 INFO : Inserting SPRC

11 May 2020 15:51:00,429 DEBUG: Total peptides inserted: 1

11 May 2020 15:51:00,429 INFO : Inserting TGFB1

11 May 2020 15:51:00,433 INFO : 75% Done

11 May 2020 15:51:00,627 DEBUG: Total peptides inserted: 1

11 May 2020 15:51:00,628 INFO : Inserting TMPS2

11 May 2020 15:51:00,632 INFO : 76% Done

11 May 2020 15:51:00,847 INFO : 78% Done

11 May 2020 15:51:01,030 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:01,030 INFO : Inserting TPM2

11 May 2020 15:51:01,034 INFO : 79% Done

11 May 2020 15:51:01,223 INFO : 80% Done

11 May 2020 15:51:01,441 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:01,441 INFO : Inserting TWST1

11 May 2020 15:51:01,445 INFO : 81% Done

11 May 2020 15:51:01,625 INFO : 82% Done

11 May 2020 15:51:01,867 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:01,868 INFO : Inserting VEGFA

11 May 2020 15:51:01,872 INFO : 83% Done

11 May 2020 15:51:02,031 DEBUG: Total peptides inserted: 1

11 May 2020 15:51:02,031 INFO : Inserting PSA

11 May 2020 15:51:02,036 INFO : 84% Done

11 May 2020 15:51:02,239 DEBUG: Total peptides inserted: 1

11 May 2020 15:51:02,239 INFO : Inserting ERG_pan

11 May 2020 15:51:02,243 INFO : 85% Done

11 May 2020 15:51:02,408 INFO : 86% Done

11 May 2020 15:51:02,577 INFO : 87% Done

11 May 2020 15:51:02,742 INFO : 88% Done

11 May 2020 15:51:02,916 INFO : 89% Done

11 May 2020 15:51:03,105 INFO : 90% Done

11 May 2020 15:51:03,289 DEBUG: Total peptides inserted: 6

11 May 2020 15:51:03,289 INFO : Inserting ETV1

11 May 2020 15:51:03,293 INFO : 91% Done

11 May 2020 15:51:03,488 INFO : 92% Done

11 May 2020 15:51:03,680 INFO : 93% Done

11 May 2020 15:51:03,884 DEBUG: Total peptides inserted: 3

11 May 2020 15:51:03,884 INFO : Inserting ERG8

11 May 2020 15:51:03,888 INFO : 94% Done

11 May 2020 15:51:04,068 INFO : 95% Done

11 May 2020 15:51:04,251 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:04,251 INFO : Inserting SMAD4

11 May 2020 15:51:04,255 INFO : 96% Done

11 May 2020 15:51:04,432 DEBUG: Total peptides inserted: 1

11 May 2020 15:51:04,432 INFO : Inserting STAT3

11 May 2020 15:51:04,437 INFO : 97% Done

11 May 2020 15:51:04,615 INFO : 98% Done

11 May 2020 15:51:04,785 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:04,785 INFO : Done parsing Skyline document.

11 May 2020 15:51:04,787 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:51:04,916 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:51:05,628 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:51:05,773 INFO : Cleaning up temp tables

11 May 2020 15:51:06,191 INFO : Completed import of Skyline document from CPDR-FFPE-ID-152_seg2_2020-01-28_10-08-15.sky.zip

11 May 2020 15:51:06,192 INFO : 100% Done

11 May 2020 15:51:06,205 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80097/CPDR-FFPE-ID-152_seg2_2020-01-28_10-08-15.sky.zip into the system

11 May 2020 15:51:06,206 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80096/CPDR-FFPE-ID-141_seg2_2020-01-28_10-07-42/CPDR-FFPE-ID-141_seg2.skyd into the system

11 May 2020 15:51:06,207 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80096/CPDR-FFPE-ID-141_seg2_2020-01-28_10-07-42/CPDR-FFPE-ID-141_seg2.skyd into the system

11 May 2020 15:51:06,208 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80096/CPDR-FFPE-ID-141_seg2_2020-01-28_10-07-42.sky.zip into the system

11 May 2020 15:51:06,212 INFO : Starting import from CPDR-FFPE-ID-141_seg2_2020-01-28_10-07-42.sky.zip

11 May 2020 15:51:06,221 INFO : Starting to import Skyline document from CPDR-FFPE-ID-141_seg2_2020-01-28_10-07-42.sky.zip

11 May 2020 15:51:06,238 INFO : Expanding CPDR-FFPE-ID-141_seg2.skyd

11 May 2020 15:51:06,790 INFO : Expanding CPDR-FFPE-ID-141_seg2.sky.view

11 May 2020 15:51:06,791 INFO : Expanding CPDR-FFPE-ID-141_seg2.sky

11 May 2020 15:51:06,840 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 15:51:06,844 INFO : 1% Done

11 May 2020 15:51:07,256 INFO : Inserting TFF3

11 May 2020 15:51:07,262 INFO : 2% Done

11 May 2020 15:51:07,441 DEBUG: Total peptides inserted: 1

11 May 2020 15:51:07,441 INFO : Inserting AKT1

11 May 2020 15:51:07,443 INFO : 3% Done

11 May 2020 15:51:07,588 INFO : 4% Done

11 May 2020 15:51:07,702 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:07,702 INFO : Inserting AMACR

11 May 2020 15:51:07,706 INFO : 5% Done

11 May 2020 15:51:07,824 INFO : 6% Done

11 May 2020 15:51:07,933 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:07,933 INFO : Inserting ANDR

11 May 2020 15:51:07,937 INFO : 7% Done

11 May 2020 15:51:08,038 INFO : 8% Done

11 May 2020 15:51:08,198 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:08,198 INFO : Inserting ANXA2

11 May 2020 15:51:08,203 INFO : 9% Done

11 May 2020 15:51:08,405 DEBUG: Total peptides inserted: 1

11 May 2020 15:51:08,405 INFO : Inserting AURKA

11 May 2020 15:51:08,409 INFO : 10% Done

11 May 2020 15:51:08,593 INFO : 11% Done

11 May 2020 15:51:08,766 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:08,766 INFO : 12% Done

11 May 2020 15:51:08,766 INFO : Inserting BRAF

11 May 2020 15:51:08,941 INFO : 13% Done

11 May 2020 15:51:09,110 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:09,110 INFO : Inserting CAMKK2

11 May 2020 15:51:09,114 INFO : 15% Done

11 May 2020 15:51:09,316 DEBUG: Total peptides inserted: 1

11 May 2020 15:51:09,316 INFO : Inserting CCND1

11 May 2020 15:51:09,321 INFO : 16% Done

11 May 2020 15:51:09,486 DEBUG: Total peptides inserted: 1

11 May 2020 15:51:09,486 INFO : Inserting CDN1A

11 May 2020 15:51:09,491 INFO : 17% Done

11 May 2020 15:51:09,673 INFO : 18% Done

11 May 2020 15:51:09,862 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:09,863 INFO : Inserting CRISP3

11 May 2020 15:51:09,867 INFO : 19% Done

11 May 2020 15:51:10,066 INFO : 20% Done

11 May 2020 15:51:10,254 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:10,254 INFO : Inserting DCOR

11 May 2020 15:51:10,259 INFO : 21% Done

11 May 2020 15:51:10,436 INFO : 22% Done

11 May 2020 15:51:10,609 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:10,609 INFO : Inserting EGFR

11 May 2020 15:51:10,614 INFO : 23% Done

11 May 2020 15:51:10,799 DEBUG: Total peptides inserted: 1

11 May 2020 15:51:10,799 INFO : Inserting EZH2

11 May 2020 15:51:10,803 INFO : 24% Done

11 May 2020 15:51:10,961 INFO : 25% Done

11 May 2020 15:51:11,120 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:11,120 INFO : Inserting FGFR1

11 May 2020 15:51:11,311 INFO : 26% Done

11 May 2020 15:51:11,485 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:11,485 INFO : Inserting FOLH1

11 May 2020 15:51:11,489 INFO : 27% Done

11 May 2020 15:51:11,675 DEBUG: Total peptides inserted: 1

11 May 2020 15:51:11,675 INFO : Inserting HIF1A

11 May 2020 15:51:11,680 INFO : 28% Done

11 May 2020 15:51:11,863 INFO : 29% Done

11 May 2020 15:51:12,047 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:12,047 INFO : Inserting HPN

11 May 2020 15:51:12,051 INFO : 30% Done

11 May 2020 15:51:12,236 INFO : 31% Done

11 May 2020 15:51:12,414 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:12,414 INFO : Inserting HSPB1

11 May 2020 15:51:12,419 INFO : 33% Done

11 May 2020 15:51:12,623 INFO : 34% Done

11 May 2020 15:51:12,841 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:12,842 INFO : Inserting HXC6

11 May 2020 15:51:12,846 INFO : 35% Done

11 May 2020 15:51:13,041 INFO : 36% Done

11 May 2020 15:51:13,225 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:13,226 INFO : Inserting KLK11

11 May 2020 15:51:13,230 INFO : 37% Done

11 May 2020 15:51:13,436 INFO : 38% Done

11 May 2020 15:51:13,618 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:13,618 INFO : Inserting KLK2

11 May 2020 15:51:13,623 INFO : 39% Done

11 May 2020 15:51:13,835 INFO : 40% Done

11 May 2020 15:51:13,999 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:13,999 INFO : Inserting MMP2

11 May 2020 15:51:14,003 INFO : 41% Done

11 May 2020 15:51:14,176 INFO : 42% Done

11 May 2020 15:51:14,385 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:14,385 INFO : Inserting MMP9

11 May 2020 15:51:14,390 INFO : 43% Done

11 May 2020 15:51:14,589 DEBUG: Total peptides inserted: 1

11 May 2020 15:51:14,590 INFO : 44% Done

11 May 2020 15:51:14,590 INFO : Inserting MUC1

11 May 2020 15:51:14,594 INFO : 45% Done

11 May 2020 15:51:14,780 DEBUG: Total peptides inserted: 1

11 May 2020 15:51:14,780 INFO : Inserting MUC6

11 May 2020 15:51:14,784 INFO : 46% Done

11 May 2020 15:51:14,959 INFO : 47% Done

11 May 2020 15:51:15,148 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:15,148 INFO : Inserting MYC

11 May 2020 15:51:15,152 INFO : 48% Done

11 May 2020 15:51:15,309 INFO : 49% Done

11 May 2020 15:51:15,485 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:15,485 INFO : Inserting MYCN

11 May 2020 15:51:15,657 INFO : 51% Done

11 May 2020 15:51:15,839 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:15,840 INFO : Inserting MYO6

11 May 2020 15:51:15,844 INFO : 52% Done

11 May 2020 15:51:16,062 INFO : 53% Done

11 May 2020 15:51:16,232 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:16,232 INFO : Inserting NCOA2

11 May 2020 15:51:16,236 INFO : 54% Done

11 May 2020 15:51:16,397 DEBUG: Total peptides inserted: 1

11 May 2020 15:51:16,397 INFO : Inserting NPY

11 May 2020 15:51:16,401 INFO : 55% Done

11 May 2020 15:51:16,568 INFO : 56% Done

11 May 2020 15:51:16,754 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:16,754 INFO : Inserting O51E2

11 May 2020 15:51:16,759 INFO : 57% Done

11 May 2020 15:51:16,953 INFO : 58% Done

11 May 2020 15:51:17,121 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:17,121 INFO : Inserting OSTP

11 May 2020 15:51:17,125 INFO : 59% Done

11 May 2020 15:51:17,293 INFO : 60% Done

11 May 2020 15:51:17,459 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:17,459 INFO : Inserting P53

11 May 2020 15:51:17,464 INFO : 61% Done

11 May 2020 15:51:17,673 INFO : 62% Done

11 May 2020 15:51:17,834 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:17,834 INFO : Inserting PAFA

11 May 2020 15:51:17,839 INFO : 63% Done

11 May 2020 15:51:18,014 INFO : 64% Done

11 May 2020 15:51:18,179 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:18,180 INFO : Inserting PGFRB

11 May 2020 15:51:18,184 INFO : 65% Done

11 May 2020 15:51:18,362 INFO : 66% Done

11 May 2020 15:51:18,555 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:18,556 INFO : Inserting PK3CA

11 May 2020 15:51:18,560 INFO : 67% Done

11 May 2020 15:51:18,744 INFO : 68% Done

11 May 2020 15:51:18,919 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:18,919 INFO : Inserting RAF1

11 May 2020 15:51:18,923 INFO : 69% Done

11 May 2020 15:51:19,107 INFO : 71% Done

11 May 2020 15:51:19,309 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:19,309 INFO : Inserting SERPINI1

11 May 2020 15:51:19,313 INFO : 72% Done

11 May 2020 15:51:19,497 INFO : 73% Done

11 May 2020 15:51:19,669 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:19,670 INFO : Inserting SPINK1

11 May 2020 15:51:19,674 INFO : 74% Done

11 May 2020 15:51:19,847 DEBUG: Total peptides inserted: 1

11 May 2020 15:51:19,847 INFO : Inserting SPRC

11 May 2020 15:51:20,013 DEBUG: Total peptides inserted: 1

11 May 2020 15:51:20,013 INFO : Inserting TGFB1

11 May 2020 15:51:20,017 INFO : 75% Done

11 May 2020 15:51:20,196 DEBUG: Total peptides inserted: 1

11 May 2020 15:51:20,196 INFO : Inserting TMPS2

11 May 2020 15:51:20,200 INFO : 76% Done

11 May 2020 15:51:20,409 INFO : 77% Done

11 May 2020 15:51:20,611 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:20,611 INFO : Inserting TPM2

11 May 2020 15:51:20,616 INFO : 78% Done

11 May 2020 15:51:20,820 INFO : 79% Done

11 May 2020 15:51:21,033 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:21,033 INFO : Inserting TWST1

11 May 2020 15:51:21,037 INFO : 80% Done

11 May 2020 15:51:21,207 INFO : 81% Done

11 May 2020 15:51:21,387 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:21,387 INFO : Inserting VEGFA

11 May 2020 15:51:21,391 INFO : 82% Done

11 May 2020 15:51:21,570 DEBUG: Total peptides inserted: 1

11 May 2020 15:51:21,570 INFO : Inserting PSA

11 May 2020 15:51:21,575 INFO : 83% Done

11 May 2020 15:51:21,806 DEBUG: Total peptides inserted: 1

11 May 2020 15:51:21,806 INFO : Inserting ERG_pan

11 May 2020 15:51:21,811 INFO : 85% Done

11 May 2020 15:51:21,988 INFO : 86% Done

11 May 2020 15:51:22,175 INFO : 87% Done

11 May 2020 15:51:22,504 INFO : 88% Done

11 May 2020 15:51:22,687 INFO : 90% Done

11 May 2020 15:51:22,869 DEBUG: Total peptides inserted: 6

11 May 2020 15:51:22,869 INFO : Inserting ETV1

11 May 2020 15:51:22,874 INFO : 91% Done

11 May 2020 15:51:23,073 INFO : 92% Done

11 May 2020 15:51:23,255 INFO : 93% Done

11 May 2020 15:51:23,441 DEBUG: Total peptides inserted: 3

11 May 2020 15:51:23,441 INFO : Inserting ERG8

11 May 2020 15:51:23,445 INFO : 94% Done

11 May 2020 15:51:23,617 INFO : 95% Done

11 May 2020 15:51:23,805 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:23,805 INFO : Inserting SMAD4

11 May 2020 15:51:23,810 INFO : 96% Done

11 May 2020 15:51:23,976 DEBUG: Total peptides inserted: 1

11 May 2020 15:51:23,976 INFO : Inserting STAT3

11 May 2020 15:51:23,981 INFO : 97% Done

11 May 2020 15:51:24,173 INFO : 98% Done

11 May 2020 15:51:24,345 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:24,345 INFO : Done parsing Skyline document.

11 May 2020 15:51:24,347 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:51:24,501 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:51:25,162 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:51:25,309 INFO : Cleaning up temp tables

11 May 2020 15:51:25,725 INFO : Completed import of Skyline document from CPDR-FFPE-ID-141_seg2_2020-01-28_10-07-42.sky.zip

11 May 2020 15:51:25,727 INFO : 100% Done

11 May 2020 15:51:25,789 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80096/CPDR-FFPE-ID-141_seg2_2020-01-28_10-07-42.sky.zip into the system

11 May 2020 15:51:25,789 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80091/CPDR-FFPE-ID-91_seg2_2020-01-28_10-06-31/CPDR-FFPE-ID-91_seg2.skyd into the system

11 May 2020 15:51:25,790 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80091/CPDR-FFPE-ID-91_seg2_2020-01-28_10-06-31/CPDR-FFPE-ID-91_seg2.skyd into the system

11 May 2020 15:51:25,790 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80091/CPDR-FFPE-ID-91_seg2_2020-01-28_10-06-31.sky.zip into the system

11 May 2020 15:51:25,794 INFO : Starting import from CPDR-FFPE-ID-91_seg2_2020-01-28_10-06-31.sky.zip

11 May 2020 15:51:25,801 INFO : Starting to import Skyline document from CPDR-FFPE-ID-91_seg2_2020-01-28_10-06-31.sky.zip

11 May 2020 15:51:25,817 INFO : Expanding CPDR-FFPE-ID-91_seg2.skyd

11 May 2020 15:51:26,340 INFO : Expanding CPDR-FFPE-ID-91_seg2.sky.view

11 May 2020 15:51:26,341 INFO : Expanding CPDR-FFPE-ID-91_seg2.sky

11 May 2020 15:51:26,390 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 15:51:26,393 INFO : 1% Done

11 May 2020 15:51:26,743 INFO : Inserting TFF3

11 May 2020 15:51:26,746 INFO : 2% Done

11 May 2020 15:51:26,816 DEBUG: Total peptides inserted: 1

11 May 2020 15:51:26,816 INFO : Inserting AKT1

11 May 2020 15:51:26,818 INFO : 3% Done

11 May 2020 15:51:26,893 INFO : 4% Done

11 May 2020 15:51:26,972 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:26,972 INFO : Inserting AMACR

11 May 2020 15:51:26,974 INFO : 5% Done

11 May 2020 15:51:27,103 INFO : 6% Done

11 May 2020 15:51:27,302 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:27,302 INFO : Inserting ANDR

11 May 2020 15:51:27,306 INFO : 7% Done

11 May 2020 15:51:27,483 INFO : 9% Done

11 May 2020 15:51:27,664 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:27,664 INFO : Inserting ANXA2

11 May 2020 15:51:27,669 INFO : 10% Done

11 May 2020 15:51:27,874 DEBUG: Total peptides inserted: 1

11 May 2020 15:51:27,874 INFO : Inserting AURKA

11 May 2020 15:51:27,879 INFO : 11% Done

11 May 2020 15:51:28,046 INFO : 12% Done

11 May 2020 15:51:28,220 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:28,221 INFO : Inserting BRAF

11 May 2020 15:51:28,225 INFO : 13% Done

11 May 2020 15:51:28,397 INFO : 14% Done

11 May 2020 15:51:28,581 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:28,581 INFO : Inserting CAMKK2

11 May 2020 15:51:28,586 INFO : 15% Done

11 May 2020 15:51:28,782 DEBUG: Total peptides inserted: 1

11 May 2020 15:51:28,783 INFO : Inserting CCND1

11 May 2020 15:51:28,787 INFO : 16% Done

11 May 2020 15:51:28,953 DEBUG: Total peptides inserted: 1

11 May 2020 15:51:28,953 INFO : Inserting CDN1A

11 May 2020 15:51:28,958 INFO : 17% Done

11 May 2020 15:51:29,121 INFO : 18% Done

11 May 2020 15:51:29,303 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:29,303 INFO : Inserting CRISP3

11 May 2020 15:51:29,308 INFO : 19% Done

11 May 2020 15:51:29,510 INFO : 20% Done

11 May 2020 15:51:29,760 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:29,760 INFO : Inserting DCOR

11 May 2020 15:51:29,764 INFO : 21% Done

11 May 2020 15:51:29,944 INFO : 22% Done

11 May 2020 15:51:30,109 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:30,109 INFO : Inserting EGFR

11 May 2020 15:51:30,114 INFO : 23% Done

11 May 2020 15:51:30,293 DEBUG: Total peptides inserted: 1

11 May 2020 15:51:30,293 INFO : Inserting EZH2

11 May 2020 15:51:30,297 INFO : 24% Done

11 May 2020 15:51:30,472 INFO : 25% Done

11 May 2020 15:51:30,621 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:30,621 INFO : Inserting FGFR1

11 May 2020 15:51:30,814 INFO : 26% Done

11 May 2020 15:51:30,994 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:30,994 INFO : Inserting FOLH1

11 May 2020 15:51:30,999 INFO : 27% Done

11 May 2020 15:51:31,188 DEBUG: Total peptides inserted: 1

11 May 2020 15:51:31,188 INFO : Inserting HIF1A

11 May 2020 15:51:31,236 INFO : 28% Done

11 May 2020 15:51:31,413 INFO : 29% Done

11 May 2020 15:51:31,587 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:31,587 INFO : Inserting HPN

11 May 2020 15:51:31,592 INFO : 31% Done

11 May 2020 15:51:31,780 INFO : 32% Done

11 May 2020 15:51:31,973 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:31,973 INFO : Inserting HSPB1

11 May 2020 15:51:31,978 INFO : 33% Done

11 May 2020 15:51:32,165 INFO : 34% Done

11 May 2020 15:51:32,365 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:32,366 INFO : Inserting HXC6

11 May 2020 15:51:32,370 INFO : 35% Done

11 May 2020 15:51:32,557 INFO : 36% Done

11 May 2020 15:51:32,720 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:32,721 INFO : Inserting KLK11

11 May 2020 15:51:32,725 INFO : 37% Done

11 May 2020 15:51:32,923 INFO : 38% Done

11 May 2020 15:51:33,093 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:33,093 INFO : Inserting KLK2

11 May 2020 15:51:33,098 INFO : 40% Done

11 May 2020 15:51:33,280 INFO : 41% Done

11 May 2020 15:51:33,446 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:33,446 INFO : Inserting MMP2

11 May 2020 15:51:33,451 INFO : 42% Done

11 May 2020 15:51:33,642 INFO : 43% Done

11 May 2020 15:51:33,823 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:33,824 INFO : Inserting MMP9

11 May 2020 15:51:33,829 INFO : 44% Done

11 May 2020 15:51:34,020 DEBUG: Total peptides inserted: 1

11 May 2020 15:51:34,020 INFO : Inserting MUC1

11 May 2020 15:51:34,024 INFO : 45% Done

11 May 2020 15:51:34,208 DEBUG: Total peptides inserted: 1

11 May 2020 15:51:34,208 INFO : Inserting MUC6

11 May 2020 15:51:34,213 INFO : 46% Done

11 May 2020 15:51:34,361 INFO : 47% Done

11 May 2020 15:51:34,540 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:34,540 INFO : Inserting MYC

11 May 2020 15:51:34,545 INFO : 48% Done

11 May 2020 15:51:34,725 INFO : 49% Done

11 May 2020 15:51:34,878 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:34,878 INFO : Inserting MYCN

11 May 2020 15:51:34,882 INFO : 50% Done

11 May 2020 15:51:35,063 INFO : 51% Done

11 May 2020 15:51:35,233 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:35,233 INFO : Inserting MYO6

11 May 2020 15:51:35,238 INFO : 52% Done

11 May 2020 15:51:35,425 INFO : 53% Done

11 May 2020 15:51:35,600 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:35,600 INFO : Inserting NCOA2

11 May 2020 15:51:35,604 INFO : 54% Done

11 May 2020 15:51:35,784 DEBUG: Total peptides inserted: 1

11 May 2020 15:51:35,784 INFO : Inserting NPY

11 May 2020 15:51:35,788 INFO : 55% Done

11 May 2020 15:51:35,941 INFO : 56% Done

11 May 2020 15:51:36,118 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:36,118 INFO : Inserting O51E2

11 May 2020 15:51:36,122 INFO : 57% Done

11 May 2020 15:51:36,296 INFO : 59% Done

11 May 2020 15:51:36,499 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:36,499 INFO : Inserting OSTP

11 May 2020 15:51:36,504 INFO : 60% Done

11 May 2020 15:51:36,844 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:36,844 INFO : Inserting P53

11 May 2020 15:51:36,848 INFO : 61% Done

11 May 2020 15:51:37,031 INFO : 62% Done

11 May 2020 15:51:37,230 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:37,230 INFO : Inserting PAFA

11 May 2020 15:51:37,235 INFO : 64% Done

11 May 2020 15:51:37,586 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:37,586 INFO : Inserting PGFRB

11 May 2020 15:51:37,591 INFO : 65% Done

11 May 2020 15:51:37,765 INFO : 67% Done

11 May 2020 15:51:37,965 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:37,965 INFO : Inserting PK3CA

11 May 2020 15:51:37,969 INFO : 68% Done

11 May 2020 15:51:38,175 INFO : 69% Done

11 May 2020 15:51:38,346 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:38,346 INFO : Inserting RAF1

11 May 2020 15:51:38,350 INFO : 70% Done

11 May 2020 15:51:38,536 INFO : 71% Done

11 May 2020 15:51:38,758 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:38,758 INFO : Inserting SERPINI1

11 May 2020 15:51:38,762 INFO : 72% Done

11 May 2020 15:51:38,943 INFO : 73% Done

11 May 2020 15:51:39,138 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:39,139 INFO : Inserting SPINK1

11 May 2020 15:51:39,143 INFO : 74% Done

11 May 2020 15:51:39,335 DEBUG: Total peptides inserted: 1

11 May 2020 15:51:39,336 INFO : Inserting SPRC

11 May 2020 15:51:39,519 DEBUG: Total peptides inserted: 1

11 May 2020 15:51:39,519 INFO : Inserting TGFB1

11 May 2020 15:51:39,523 INFO : 75% Done

11 May 2020 15:51:39,710 DEBUG: Total peptides inserted: 1

11 May 2020 15:51:39,710 INFO : Inserting TMPS2

11 May 2020 15:51:39,715 INFO : 76% Done

11 May 2020 15:51:39,967 INFO : 77% Done

11 May 2020 15:51:40,180 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:40,180 INFO : Inserting TPM2

11 May 2020 15:51:40,184 INFO : 78% Done

11 May 2020 15:51:40,378 INFO : 79% Done

11 May 2020 15:51:40,624 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:40,624 INFO : Inserting TWST1

11 May 2020 15:51:40,629 INFO : 80% Done

11 May 2020 15:51:40,823 INFO : 81% Done

11 May 2020 15:51:41,007 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:41,007 INFO : Inserting VEGFA

11 May 2020 15:51:41,012 INFO : 82% Done

11 May 2020 15:51:41,203 DEBUG: Total peptides inserted: 1

11 May 2020 15:51:41,203 INFO : Inserting PSA

11 May 2020 15:51:41,208 INFO : 84% Done

11 May 2020 15:51:41,437 DEBUG: Total peptides inserted: 1

11 May 2020 15:51:41,437 INFO : Inserting ERG_pan

11 May 2020 15:51:41,441 INFO : 85% Done

11 May 2020 15:51:41,617 INFO : 86% Done

11 May 2020 15:51:41,962 INFO : 87% Done

11 May 2020 15:51:42,139 INFO : 89% Done

11 May 2020 15:51:42,342 INFO : 90% Done

11 May 2020 15:51:42,538 DEBUG: Total peptides inserted: 6

11 May 2020 15:51:42,538 INFO : Inserting ETV1

11 May 2020 15:51:42,542 INFO : 91% Done

11 May 2020 15:51:42,750 INFO : 92% Done

11 May 2020 15:51:42,939 INFO : 93% Done

11 May 2020 15:51:43,116 DEBUG: Total peptides inserted: 3

11 May 2020 15:51:43,116 INFO : Inserting ERG8

11 May 2020 15:51:43,121 INFO : 94% Done

11 May 2020 15:51:43,311 INFO : 95% Done

11 May 2020 15:51:43,518 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:43,518 INFO : Inserting SMAD4

11 May 2020 15:51:43,523 INFO : 96% Done

11 May 2020 15:51:43,732 DEBUG: Total peptides inserted: 1

11 May 2020 15:51:43,732 INFO : Inserting STAT3

11 May 2020 15:51:43,736 INFO : 97% Done

11 May 2020 15:51:43,961 INFO : 98% Done

11 May 2020 15:51:44,168 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:44,168 INFO : Done parsing Skyline document.

11 May 2020 15:51:44,171 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:51:44,299 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:51:45,055 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:51:45,202 INFO : Cleaning up temp tables

11 May 2020 15:51:45,461 INFO : Completed import of Skyline document from CPDR-FFPE-ID-91_seg2_2020-01-28_10-06-31.sky.zip

11 May 2020 15:51:45,463 INFO : 100% Done

11 May 2020 15:51:45,468 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80091/CPDR-FFPE-ID-91_seg2_2020-01-28_10-06-31.sky.zip into the system

11 May 2020 15:51:45,468 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80086/CPDR-FFPE-ID-66_seg2_2020-01-28_10-04-05/CPDR-FFPE-ID-66_seg2.skyd into the system

11 May 2020 15:51:45,469 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80086/CPDR-FFPE-ID-66_seg2_2020-01-28_10-04-05/CPDR-FFPE-ID-66_seg2.skyd into the system

11 May 2020 15:51:45,469 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80086/CPDR-FFPE-ID-66_seg2_2020-01-28_10-04-05.sky.zip into the system

11 May 2020 15:51:45,470 INFO : Starting import from CPDR-FFPE-ID-66_seg2_2020-01-28_10-04-05.sky.zip

11 May 2020 15:51:45,473 INFO : Starting to import Skyline document from CPDR-FFPE-ID-66_seg2_2020-01-28_10-04-05.sky.zip

11 May 2020 15:51:45,482 INFO : Expanding CPDR-FFPE-ID-66_seg2.skyd

11 May 2020 15:51:45,981 INFO : Expanding CPDR-FFPE-ID-66_seg2.sky.view

11 May 2020 15:51:45,982 INFO : Expanding CPDR-FFPE-ID-66_seg2.sky

11 May 2020 15:51:46,029 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 15:51:46,031 INFO : 1% Done

11 May 2020 15:51:46,271 INFO : Inserting TFF3

11 May 2020 15:51:46,275 INFO : 2% Done

11 May 2020 15:51:46,360 DEBUG: Total peptides inserted: 1

11 May 2020 15:51:46,360 INFO : Inserting AKT1

11 May 2020 15:51:46,362 INFO : 3% Done

11 May 2020 15:51:46,444 INFO : 4% Done

11 May 2020 15:51:46,558 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:46,558 INFO : Inserting AMACR

11 May 2020 15:51:46,563 INFO : 5% Done

11 May 2020 15:51:46,808 INFO : 6% Done

11 May 2020 15:51:47,044 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:47,044 INFO : Inserting ANDR

11 May 2020 15:51:47,049 INFO : 7% Done

11 May 2020 15:51:47,261 INFO : 8% Done

11 May 2020 15:51:47,461 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:47,462 INFO : Inserting ANXA2

11 May 2020 15:51:47,467 INFO : 9% Done

11 May 2020 15:51:47,696 DEBUG: Total peptides inserted: 1

11 May 2020 15:51:47,697 INFO : Inserting AURKA

11 May 2020 15:51:47,701 INFO : 11% Done

11 May 2020 15:51:47,910 INFO : 12% Done

11 May 2020 15:51:48,115 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:48,115 INFO : Inserting BRAF

11 May 2020 15:51:48,120 INFO : 13% Done

11 May 2020 15:51:48,303 INFO : 14% Done

11 May 2020 15:51:48,504 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:48,504 INFO : Inserting CAMKK2

11 May 2020 15:51:48,509 INFO : 15% Done

11 May 2020 15:51:48,742 DEBUG: Total peptides inserted: 1

11 May 2020 15:51:48,742 INFO : Inserting CCND1

11 May 2020 15:51:48,747 INFO : 16% Done

11 May 2020 15:51:48,958 DEBUG: Total peptides inserted: 1

11 May 2020 15:51:48,958 INFO : Inserting CDN1A

11 May 2020 15:51:48,963 INFO : 17% Done

11 May 2020 15:51:49,167 INFO : 18% Done

11 May 2020 15:51:49,373 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:49,373 INFO : Inserting CRISP3

11 May 2020 15:51:49,378 INFO : 19% Done

11 May 2020 15:51:49,604 INFO : 20% Done

11 May 2020 15:51:49,821 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:49,821 INFO : Inserting DCOR

11 May 2020 15:51:49,825 INFO : 21% Done

11 May 2020 15:51:50,017 INFO : 22% Done

11 May 2020 15:51:50,218 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:50,219 INFO : Inserting EGFR

11 May 2020 15:51:50,223 INFO : 23% Done

11 May 2020 15:51:50,445 DEBUG: Total peptides inserted: 1

11 May 2020 15:51:50,445 INFO : Inserting EZH2

11 May 2020 15:51:50,450 INFO : 24% Done

11 May 2020 15:51:50,658 INFO : 25% Done

11 May 2020 15:51:50,841 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:50,842 INFO : Inserting FGFR1

11 May 2020 15:51:51,047 INFO : 26% Done

11 May 2020 15:51:51,242 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:51,242 INFO : Inserting FOLH1

11 May 2020 15:51:51,247 INFO : 27% Done

11 May 2020 15:51:51,471 DEBUG: Total peptides inserted: 1

11 May 2020 15:51:51,472 INFO : Inserting HIF1A

11 May 2020 15:51:51,476 INFO : 29% Done

11 May 2020 15:51:51,699 INFO : 30% Done

11 May 2020 15:51:51,894 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:51,894 INFO : Inserting HPN

11 May 2020 15:51:51,899 INFO : 31% Done

11 May 2020 15:51:52,118 INFO : 32% Done

11 May 2020 15:51:52,329 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:52,329 INFO : Inserting HSPB1

11 May 2020 15:51:52,334 INFO : 33% Done

11 May 2020 15:51:52,575 INFO : 34% Done

11 May 2020 15:51:52,810 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:52,810 INFO : Inserting HXC6

11 May 2020 15:51:52,815 INFO : 35% Done

11 May 2020 15:51:53,034 INFO : 36% Done

11 May 2020 15:51:53,226 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:53,226 INFO : Inserting KLK11

11 May 2020 15:51:53,231 INFO : 37% Done

11 May 2020 15:51:53,461 INFO : 38% Done

11 May 2020 15:51:53,662 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:53,662 INFO : Inserting KLK2

11 May 2020 15:51:53,682 INFO : 40% Done

11 May 2020 15:51:53,896 INFO : 41% Done

11 May 2020 15:51:54,099 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:54,099 INFO : Inserting MMP2

11 May 2020 15:51:54,104 INFO : 42% Done

11 May 2020 15:51:54,305 INFO : 43% Done

11 May 2020 15:51:54,509 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:54,509 INFO : Inserting MMP9

11 May 2020 15:51:54,514 INFO : 44% Done

11 May 2020 15:51:54,723 DEBUG: Total peptides inserted: 1

11 May 2020 15:51:54,723 INFO : Inserting MUC1

11 May 2020 15:51:54,728 INFO : 45% Done

11 May 2020 15:51:54,921 DEBUG: Total peptides inserted: 1

11 May 2020 15:51:54,921 INFO : Inserting MUC6

11 May 2020 15:51:54,926 INFO : 46% Done

11 May 2020 15:51:55,116 INFO : 47% Done

11 May 2020 15:51:55,319 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:55,320 INFO : Inserting MYC

11 May 2020 15:51:55,324 INFO : 48% Done

11 May 2020 15:51:55,517 INFO : 49% Done

11 May 2020 15:51:55,705 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:55,705 INFO : Inserting MYCN

11 May 2020 15:51:55,710 INFO : 50% Done

11 May 2020 15:51:55,919 INFO : 51% Done

11 May 2020 15:51:56,137 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:56,137 INFO : Inserting MYO6

11 May 2020 15:51:56,142 INFO : 52% Done

11 May 2020 15:51:56,378 INFO : 53% Done

11 May 2020 15:51:56,561 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:56,561 INFO : Inserting NCOA2

11 May 2020 15:51:56,566 INFO : 54% Done

11 May 2020 15:51:56,784 DEBUG: Total peptides inserted: 1

11 May 2020 15:51:56,785 INFO : Inserting NPY

11 May 2020 15:51:56,789 INFO : 55% Done

11 May 2020 15:51:56,987 INFO : 56% Done

11 May 2020 15:51:57,192 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:57,193 INFO : Inserting O51E2

11 May 2020 15:51:57,207 INFO : 57% Done

11 May 2020 15:51:57,452 INFO : 58% Done

11 May 2020 15:51:57,639 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:57,639 INFO : Inserting OSTP

11 May 2020 15:51:57,643 INFO : 59% Done

11 May 2020 15:51:57,831 INFO : 60% Done

11 May 2020 15:51:57,996 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:57,996 INFO : Inserting P53

11 May 2020 15:51:58,001 INFO : 61% Done

11 May 2020 15:51:58,181 INFO : 62% Done

11 May 2020 15:51:58,361 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:58,361 INFO : Inserting PAFA

11 May 2020 15:51:58,366 INFO : 63% Done

11 May 2020 15:51:58,537 INFO : 64% Done

11 May 2020 15:51:58,713 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:58,713 INFO : Inserting PGFRB

11 May 2020 15:51:58,718 INFO : 65% Done

11 May 2020 15:51:58,911 INFO : 66% Done

11 May 2020 15:51:59,107 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:59,107 INFO : Inserting PK3CA

11 May 2020 15:51:59,112 INFO : 67% Done

11 May 2020 15:51:59,364 INFO : 68% Done

11 May 2020 15:51:59,534 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:59,535 INFO : 69% Done

11 May 2020 15:51:59,535 INFO : Inserting RAF1

11 May 2020 15:51:59,539 INFO : 70% Done

11 May 2020 15:51:59,737 INFO : 71% Done

11 May 2020 15:51:59,946 DEBUG: Total peptides inserted: 2

11 May 2020 15:51:59,946 INFO : Inserting SERPINI1

11 May 2020 15:51:59,951 INFO : 72% Done

11 May 2020 15:52:00,135 INFO : 73% Done

11 May 2020 15:52:00,324 DEBUG: Total peptides inserted: 2

11 May 2020 15:52:00,324 INFO : Inserting SPINK1

11 May 2020 15:52:00,329 INFO : 74% Done

11 May 2020 15:52:00,519 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:00,520 INFO : Inserting SPRC

11 May 2020 15:52:00,704 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:00,705 INFO : Inserting TGFB1

11 May 2020 15:52:00,709 INFO : 75% Done

11 May 2020 15:52:00,904 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:00,904 INFO : Inserting TMPS2

11 May 2020 15:52:00,909 INFO : 76% Done

11 May 2020 15:52:01,128 INFO : 77% Done

11 May 2020 15:52:01,336 DEBUG: Total peptides inserted: 2

11 May 2020 15:52:01,336 INFO : Inserting TPM2

11 May 2020 15:52:01,341 INFO : 78% Done

11 May 2020 15:52:01,545 INFO : 79% Done

11 May 2020 15:52:01,767 DEBUG: Total peptides inserted: 2

11 May 2020 15:52:01,767 INFO : Inserting TWST1

11 May 2020 15:52:01,771 INFO : 80% Done

11 May 2020 15:52:01,961 INFO : 81% Done

11 May 2020 15:52:02,149 DEBUG: Total peptides inserted: 2

11 May 2020 15:52:02,149 INFO : Inserting VEGFA

11 May 2020 15:52:02,154 INFO : 82% Done

11 May 2020 15:52:02,329 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:02,329 INFO : Inserting PSA

11 May 2020 15:52:02,334 INFO : 84% Done

11 May 2020 15:52:02,555 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:02,555 INFO : Inserting ERG_pan

11 May 2020 15:52:02,559 INFO : 85% Done

11 May 2020 15:52:02,726 INFO : 86% Done

11 May 2020 15:52:02,902 INFO : 87% Done

11 May 2020 15:52:03,238 INFO : 88% Done

11 May 2020 15:52:03,431 INFO : 90% Done

11 May 2020 15:52:03,616 DEBUG: Total peptides inserted: 6

11 May 2020 15:52:03,616 INFO : Inserting ETV1

11 May 2020 15:52:03,621 INFO : 91% Done

11 May 2020 15:52:03,824 INFO : 92% Done

11 May 2020 15:52:04,022 INFO : 93% Done

11 May 2020 15:52:04,227 DEBUG: Total peptides inserted: 3

11 May 2020 15:52:04,227 INFO : Inserting ERG8

11 May 2020 15:52:04,231 INFO : 94% Done

11 May 2020 15:52:04,422 INFO : 95% Done

11 May 2020 15:52:04,623 DEBUG: Total peptides inserted: 2

11 May 2020 15:52:04,623 INFO : Inserting SMAD4

11 May 2020 15:52:04,628 INFO : 96% Done

11 May 2020 15:52:04,812 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:04,812 INFO : Inserting STAT3

11 May 2020 15:52:04,817 INFO : 97% Done

11 May 2020 15:52:05,012 INFO : 98% Done

11 May 2020 15:52:05,227 DEBUG: Total peptides inserted: 2

11 May 2020 15:52:05,227 INFO : Done parsing Skyline document.

11 May 2020 15:52:05,230 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:52:05,362 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:52:06,126 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:52:06,278 INFO : Cleaning up temp tables

11 May 2020 15:52:06,627 INFO : Completed import of Skyline document from CPDR-FFPE-ID-66_seg2_2020-01-28_10-04-05.sky.zip

11 May 2020 15:52:06,629 INFO : 100% Done

11 May 2020 15:52:06,637 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80086/CPDR-FFPE-ID-66_seg2_2020-01-28_10-04-05.sky.zip into the system

11 May 2020 15:52:06,637 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80083/CPDR-FFPE-ID-16_seg2_2020-01-28_10-02-20/CPDR-FFPE-ID-16_seg2.skyd into the system

11 May 2020 15:52:06,638 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80083/CPDR-FFPE-ID-16_seg2_2020-01-28_10-02-20/CPDR-FFPE-ID-16_seg2.skyd into the system

11 May 2020 15:52:06,638 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80083/CPDR-FFPE-ID-16_seg2_2020-01-28_10-02-20.sky.zip into the system

11 May 2020 15:52:06,642 INFO : Starting import from CPDR-FFPE-ID-16_seg2_2020-01-28_10-02-20.sky.zip

11 May 2020 15:52:06,652 INFO : Starting to import Skyline document from CPDR-FFPE-ID-16_seg2_2020-01-28_10-02-20.sky.zip

11 May 2020 15:52:06,669 INFO : Expanding CPDR-FFPE-ID-16_seg2.skyd

11 May 2020 15:52:07,225 INFO : Expanding CPDR-FFPE-ID-16_seg2.sky.view

11 May 2020 15:52:07,226 INFO : Expanding CPDR-FFPE-ID-16_seg2.sky

11 May 2020 15:52:07,275 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 15:52:07,278 INFO : 1% Done

11 May 2020 15:52:07,706 INFO : Inserting TFF3

11 May 2020 15:52:07,710 INFO : 2% Done

11 May 2020 15:52:07,798 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:07,798 INFO : Inserting AKT1

11 May 2020 15:52:07,800 INFO : 3% Done

11 May 2020 15:52:07,882 INFO : 4% Done

11 May 2020 15:52:07,965 DEBUG: Total peptides inserted: 2

11 May 2020 15:52:07,965 INFO : Inserting AMACR

11 May 2020 15:52:07,967 INFO : 5% Done

11 May 2020 15:52:08,081 INFO : 6% Done

11 May 2020 15:52:08,283 DEBUG: Total peptides inserted: 2

11 May 2020 15:52:08,284 INFO : Inserting ANDR

11 May 2020 15:52:08,288 INFO : 8% Done

11 May 2020 15:52:08,480 INFO : 9% Done

11 May 2020 15:52:08,659 DEBUG: Total peptides inserted: 2

11 May 2020 15:52:08,659 INFO : Inserting ANXA2

11 May 2020 15:52:08,664 INFO : 10% Done

11 May 2020 15:52:08,866 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:08,866 INFO : Inserting AURKA

11 May 2020 15:52:08,871 INFO : 11% Done

11 May 2020 15:52:09,065 INFO : 12% Done

11 May 2020 15:52:09,283 DEBUG: Total peptides inserted: 2

11 May 2020 15:52:09,283 INFO : Inserting BRAF

11 May 2020 15:52:09,288 INFO : 13% Done

11 May 2020 15:52:09,473 INFO : 14% Done

11 May 2020 15:52:09,685 DEBUG: Total peptides inserted: 2

11 May 2020 15:52:09,685 INFO : Inserting CAMKK2

11 May 2020 15:52:09,690 INFO : 15% Done

11 May 2020 15:52:09,916 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:09,916 INFO : Inserting CCND1

11 May 2020 15:52:09,921 INFO : 16% Done

11 May 2020 15:52:10,110 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:10,110 INFO : Inserting CDN1A

11 May 2020 15:52:10,115 INFO : 17% Done

11 May 2020 15:52:10,319 INFO : 18% Done

11 May 2020 15:52:10,517 DEBUG: Total peptides inserted: 2

11 May 2020 15:52:10,517 INFO : Inserting CRISP3

11 May 2020 15:52:10,522 INFO : 19% Done

11 May 2020 15:52:10,723 INFO : 20% Done

11 May 2020 15:52:10,918 DEBUG: Total peptides inserted: 2

11 May 2020 15:52:10,918 INFO : Inserting DCOR

11 May 2020 15:52:10,923 INFO : 21% Done

11 May 2020 15:52:11,167 INFO : 22% Done

11 May 2020 15:52:11,353 DEBUG: Total peptides inserted: 2

11 May 2020 15:52:11,353 INFO : Inserting EGFR

11 May 2020 15:52:11,358 INFO : 23% Done

11 May 2020 15:52:11,546 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:11,546 INFO : Inserting EZH2

11 May 2020 15:52:11,550 INFO : 24% Done

11 May 2020 15:52:11,721 INFO : 25% Done

11 May 2020 15:52:11,893 DEBUG: Total peptides inserted: 2

11 May 2020 15:52:11,893 INFO : Inserting FGFR1

11 May 2020 15:52:12,097 INFO : 26% Done

11 May 2020 15:52:12,273 DEBUG: Total peptides inserted: 2

11 May 2020 15:52:12,273 INFO : Inserting FOLH1

11 May 2020 15:52:12,278 INFO : 28% Done

11 May 2020 15:52:12,511 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:12,511 INFO : Inserting HIF1A

11 May 2020 15:52:12,516 INFO : 29% Done

11 May 2020 15:52:12,693 INFO : 30% Done

11 May 2020 15:52:12,860 DEBUG: Total peptides inserted: 2

11 May 2020 15:52:12,861 INFO : Inserting HPN

11 May 2020 15:52:12,865 INFO : 31% Done

11 May 2020 15:52:13,053 INFO : 32% Done

11 May 2020 15:52:13,232 DEBUG: Total peptides inserted: 2

11 May 2020 15:52:13,233 INFO : Inserting HSPB1

11 May 2020 15:52:13,238 INFO : 33% Done

11 May 2020 15:52:13,457 INFO : 34% Done

11 May 2020 15:52:13,664 DEBUG: Total peptides inserted: 2

11 May 2020 15:52:13,664 INFO : Inserting HXC6

11 May 2020 15:52:13,669 INFO : 35% Done

11 May 2020 15:52:13,838 INFO : 36% Done

11 May 2020 15:52:14,009 DEBUG: Total peptides inserted: 2

11 May 2020 15:52:14,009 INFO : Inserting KLK11

11 May 2020 15:52:14,014 INFO : 37% Done

11 May 2020 15:52:14,220 INFO : 38% Done

11 May 2020 15:52:14,397 DEBUG: Total peptides inserted: 2

11 May 2020 15:52:14,397 INFO : Inserting KLK2

11 May 2020 15:52:14,402 INFO : 39% Done

11 May 2020 15:52:14,612 INFO : 40% Done

11 May 2020 15:52:14,793 DEBUG: Total peptides inserted: 2

11 May 2020 15:52:14,793 INFO : Inserting MMP2

11 May 2020 15:52:14,797 INFO : 41% Done

11 May 2020 15:52:14,991 INFO : 43% Done

11 May 2020 15:52:15,200 DEBUG: Total peptides inserted: 2

11 May 2020 15:52:15,201 INFO : Inserting MMP9

11 May 2020 15:52:15,206 INFO : 44% Done

11 May 2020 15:52:15,428 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:15,428 INFO : Inserting MUC1

11 May 2020 15:52:15,432 INFO : 45% Done

11 May 2020 15:52:15,627 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:15,627 INFO : Inserting MUC6

11 May 2020 15:52:15,632 INFO : 46% Done

11 May 2020 15:52:15,800 INFO : 47% Done

11 May 2020 15:52:16,005 DEBUG: Total peptides inserted: 2

11 May 2020 15:52:16,005 INFO : Inserting MYC

11 May 2020 15:52:16,010 INFO : 48% Done

11 May 2020 15:52:16,195 INFO : 49% Done

11 May 2020 15:52:16,495 DEBUG: Total peptides inserted: 2

11 May 2020 15:52:16,495 INFO : Inserting MYCN

11 May 2020 15:52:16,500 INFO : 50% Done

11 May 2020 15:52:16,675 INFO : 51% Done

11 May 2020 15:52:16,874 DEBUG: Total peptides inserted: 2

11 May 2020 15:52:16,874 INFO : Inserting MYO6

11 May 2020 15:52:16,879 INFO : 52% Done

11 May 2020 15:52:17,097 INFO : 53% Done

11 May 2020 15:52:17,268 DEBUG: Total peptides inserted: 2

11 May 2020 15:52:17,268 INFO : Inserting NCOA2

11 May 2020 15:52:17,273 INFO : 54% Done

11 May 2020 15:52:17,462 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:17,462 INFO : Inserting NPY

11 May 2020 15:52:17,466 INFO : 55% Done

11 May 2020 15:52:17,641 INFO : 56% Done

11 May 2020 15:52:17,817 DEBUG: Total peptides inserted: 2

11 May 2020 15:52:17,817 INFO : Inserting O51E2

11 May 2020 15:52:17,821 INFO : 57% Done

11 May 2020 15:52:17,989 INFO : 58% Done

11 May 2020 15:52:18,156 DEBUG: Total peptides inserted: 2

11 May 2020 15:52:18,156 INFO : Inserting OSTP

11 May 2020 15:52:18,160 INFO : 59% Done

11 May 2020 15:52:18,334 INFO : 60% Done

11 May 2020 15:52:18,521 DEBUG: Total peptides inserted: 2

11 May 2020 15:52:18,521 INFO : Inserting P53

11 May 2020 15:52:18,525 INFO : 61% Done

11 May 2020 15:52:18,679 INFO : 62% Done

11 May 2020 15:52:18,860 DEBUG: Total peptides inserted: 2

11 May 2020 15:52:18,860 INFO : Inserting PAFA

11 May 2020 15:52:18,865 INFO : 63% Done

11 May 2020 15:52:19,018 INFO : 64% Done

11 May 2020 15:52:19,177 DEBUG: Total peptides inserted: 2

11 May 2020 15:52:19,177 INFO : Inserting PGFRB

11 May 2020 15:52:19,182 INFO : 65% Done

11 May 2020 15:52:19,395 INFO : 66% Done

11 May 2020 15:52:19,591 DEBUG: Total peptides inserted: 2

11 May 2020 15:52:19,591 INFO : Inserting PK3CA

11 May 2020 15:52:19,596 INFO : 67% Done

11 May 2020 15:52:19,814 INFO : 68% Done

11 May 2020 15:52:20,002 DEBUG: Total peptides inserted: 2

11 May 2020 15:52:20,002 INFO : Inserting RAF1

11 May 2020 15:52:20,007 INFO : 70% Done

11 May 2020 15:52:20,226 INFO : 71% Done

11 May 2020 15:52:20,446 DEBUG: Total peptides inserted: 2

11 May 2020 15:52:20,446 INFO : Inserting SERPINI1

11 May 2020 15:52:20,451 INFO : 72% Done

11 May 2020 15:52:20,665 INFO : 73% Done

11 May 2020 15:52:20,836 DEBUG: Total peptides inserted: 2

11 May 2020 15:52:20,836 INFO : Inserting SPINK1

11 May 2020 15:52:20,840 INFO : 74% Done

11 May 2020 15:52:21,011 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:21,012 INFO : Inserting SPRC

11 May 2020 15:52:21,182 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:21,183 INFO : Inserting TGFB1

11 May 2020 15:52:21,187 INFO : 75% Done

11 May 2020 15:52:21,369 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:21,369 INFO : Inserting TMPS2

11 May 2020 15:52:21,374 INFO : 76% Done

11 May 2020 15:52:21,578 INFO : 77% Done

11 May 2020 15:52:21,756 DEBUG: Total peptides inserted: 2

11 May 2020 15:52:21,757 INFO : Inserting TPM2

11 May 2020 15:52:21,761 INFO : 78% Done

11 May 2020 15:52:21,942 INFO : 79% Done

11 May 2020 15:52:22,154 DEBUG: Total peptides inserted: 2

11 May 2020 15:52:22,154 INFO : Inserting TWST1

11 May 2020 15:52:22,158 INFO : 80% Done

11 May 2020 15:52:22,325 INFO : 81% Done

11 May 2020 15:52:22,491 DEBUG: Total peptides inserted: 2

11 May 2020 15:52:22,491 INFO : Inserting VEGFA

11 May 2020 15:52:22,495 INFO : 82% Done

11 May 2020 15:52:22,662 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:22,662 INFO : Inserting PSA

11 May 2020 15:52:22,667 INFO : 84% Done

11 May 2020 15:52:22,889 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:22,890 INFO : Inserting ERG_pan

11 May 2020 15:52:23,060 INFO : 85% Done

11 May 2020 15:52:23,231 INFO : 86% Done

11 May 2020 15:52:23,396 INFO : 87% Done

11 May 2020 15:52:23,565 INFO : 88% Done

11 May 2020 15:52:23,750 INFO : 90% Done

11 May 2020 15:52:23,940 DEBUG: Total peptides inserted: 6

11 May 2020 15:52:23,941 INFO : Inserting ETV1

11 May 2020 15:52:23,945 INFO : 91% Done

11 May 2020 15:52:24,123 INFO : 92% Done

11 May 2020 15:52:24,308 INFO : 93% Done

11 May 2020 15:52:24,479 DEBUG: Total peptides inserted: 3

11 May 2020 15:52:24,479 INFO : Inserting ERG8

11 May 2020 15:52:24,483 INFO : 94% Done

11 May 2020 15:52:24,674 INFO : 95% Done

11 May 2020 15:52:24,853 DEBUG: Total peptides inserted: 2

11 May 2020 15:52:24,853 INFO : Inserting SMAD4

11 May 2020 15:52:24,860 INFO : 96% Done

11 May 2020 15:52:25,042 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:25,042 INFO : Inserting STAT3

11 May 2020 15:52:25,047 INFO : 97% Done

11 May 2020 15:52:25,248 INFO : 98% Done

11 May 2020 15:52:25,436 DEBUG: Total peptides inserted: 2

11 May 2020 15:52:25,437 INFO : Done parsing Skyline document.

11 May 2020 15:52:25,439 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:52:25,569 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:52:26,546 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:52:26,696 INFO : Cleaning up temp tables

11 May 2020 15:52:26,698 INFO : Completed import of Skyline document from CPDR-FFPE-ID-16_seg2_2020-01-28_10-02-20.sky.zip

11 May 2020 15:52:26,713 INFO : 100% Done

11 May 2020 15:52:26,719 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80083/CPDR-FFPE-ID-16_seg2_2020-01-28_10-02-20.sky.zip into the system

11 May 2020 15:52:26,719 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80077/CPDR-FFPE-ID-991_seg1_2020-01-28_09-59-06/CPDR-FFPE-ID-991_seg1.skyd into the system

11 May 2020 15:52:26,720 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80077/CPDR-FFPE-ID-991_seg1_2020-01-28_09-59-06/CPDR-FFPE-ID-991_seg1.skyd into the system

11 May 2020 15:52:26,720 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80077/CPDR-FFPE-ID-991_seg1_2020-01-28_09-59-06.sky.zip into the system

11 May 2020 15:52:26,722 INFO : Starting import from CPDR-FFPE-ID-991_seg1_2020-01-28_09-59-06.sky.zip

11 May 2020 15:52:26,725 INFO : Starting to import Skyline document from CPDR-FFPE-ID-991_seg1_2020-01-28_09-59-06.sky.zip

11 May 2020 15:52:26,736 INFO : Expanding CPDR-FFPE-ID-991_seg1.skyd

11 May 2020 15:52:27,032 INFO : Expanding CPDR-FFPE-ID-991_seg1.sky.view

11 May 2020 15:52:27,033 INFO : Expanding CPDR-FFPE-ID-991_seg1.sky

11 May 2020 15:52:27,047 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 15:52:27,051 INFO : 3% Done

11 May 2020 15:52:27,797 INFO : Inserting ANXA2

11 May 2020 15:52:27,805 INFO : 10% Done

11 May 2020 15:52:27,958 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:27,958 INFO : Inserting CAMKK2

11 May 2020 15:52:27,962 INFO : 17% Done

11 May 2020 15:52:28,147 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:28,147 INFO : Inserting CCND1

11 May 2020 15:52:28,152 INFO : 23% Done

11 May 2020 15:52:28,339 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:28,339 INFO : Inserting EGFR

11 May 2020 15:52:28,344 INFO : 27% Done

11 May 2020 15:52:28,518 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:28,518 INFO : Inserting ERG_pan

11 May 2020 15:52:28,523 INFO : 34% Done

11 May 2020 15:52:28,733 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:28,733 INFO : Inserting FOLH1

11 May 2020 15:52:28,738 INFO : 40% Done

11 May 2020 15:52:28,933 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:28,933 INFO : Inserting MMP9

11 May 2020 15:52:28,939 INFO : 48% Done

11 May 2020 15:52:29,164 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:29,164 INFO : Inserting MUC1

11 May 2020 15:52:29,169 INFO : 54% Done

11 May 2020 15:52:29,368 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:29,369 INFO : Inserting NCOA2

11 May 2020 15:52:29,373 INFO : 59% Done

11 May 2020 15:52:29,530 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:29,530 INFO : Inserting PSA

11 May 2020 15:52:29,536 INFO : 65% Done

11 May 2020 15:52:29,739 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:29,740 INFO : Inserting SMAD4

11 May 2020 15:52:29,744 INFO : 70% Done

11 May 2020 15:52:29,901 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:29,901 INFO : Inserting SPINK1

11 May 2020 15:52:29,906 INFO : 75% Done

11 May 2020 15:52:30,108 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:30,108 INFO : Inserting SPRC

11 May 2020 15:52:30,112 INFO : 79% Done

11 May 2020 15:52:30,348 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:30,348 INFO : 80% Done

11 May 2020 15:52:30,348 INFO : Inserting TFF3

11 May 2020 15:52:30,353 INFO : 87% Done

11 May 2020 15:52:30,563 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:30,563 INFO : Inserting TGFB1

11 May 2020 15:52:30,565 INFO : 91% Done

11 May 2020 15:52:30,626 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:30,626 INFO : Inserting VEGFA

11 May 2020 15:52:30,629 INFO : 98% Done

11 May 2020 15:52:30,771 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:30,771 INFO : Done parsing Skyline document.

11 May 2020 15:52:30,772 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:52:30,837 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:52:30,908 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:52:30,934 INFO : Cleaning up temp tables

11 May 2020 15:52:31,519 INFO : Completed import of Skyline document from CPDR-FFPE-ID-991_seg1_2020-01-28_09-59-06.sky.zip

11 May 2020 15:52:31,521 INFO : 100% Done

11 May 2020 15:52:31,533 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80077/CPDR-FFPE-ID-991_seg1_2020-01-28_09-59-06.sky.zip into the system

11 May 2020 15:52:31,533 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80076/CPDR-FFPE-ID-745_seg1_2020-01-28_09-58-47/CPDR-FFPE-ID-745_seg1.skyd into the system

11 May 2020 15:52:31,534 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80076/CPDR-FFPE-ID-745_seg1_2020-01-28_09-58-47/CPDR-FFPE-ID-745_seg1.skyd into the system

11 May 2020 15:52:31,534 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80076/CPDR-FFPE-ID-745_seg1_2020-01-28_09-58-47.sky.zip into the system

11 May 2020 15:52:31,539 INFO : Starting import from CPDR-FFPE-ID-745_seg1_2020-01-28_09-58-47.sky.zip

11 May 2020 15:52:31,545 INFO : Starting to import Skyline document from CPDR-FFPE-ID-745_seg1_2020-01-28_09-58-47.sky.zip

11 May 2020 15:52:31,564 INFO : Expanding CPDR-FFPE-ID-745_seg1.skyd

11 May 2020 15:52:32,092 INFO : Expanding CPDR-FFPE-ID-745_seg1.sky.view

11 May 2020 15:52:32,093 INFO : Expanding CPDR-FFPE-ID-745_seg1.sky

11 May 2020 15:52:32,099 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 15:52:32,100 INFO : 3% Done

11 May 2020 15:52:32,338 INFO : Inserting ANXA2

11 May 2020 15:52:32,343 INFO : 10% Done

11 May 2020 15:52:32,423 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:32,423 INFO : Inserting CAMKK2

11 May 2020 15:52:32,426 INFO : 16% Done

11 May 2020 15:52:32,518 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:32,518 INFO : 17% Done

11 May 2020 15:52:32,518 INFO : Inserting CCND1

11 May 2020 15:52:32,520 INFO : 23% Done

11 May 2020 15:52:32,698 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:32,698 INFO : Inserting EGFR

11 May 2020 15:52:32,703 INFO : 27% Done

11 May 2020 15:52:32,877 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:32,877 INFO : Inserting ERG_pan

11 May 2020 15:52:32,882 INFO : 34% Done

11 May 2020 15:52:33,098 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:33,098 INFO : Inserting FOLH1

11 May 2020 15:52:33,104 INFO : 41% Done

11 May 2020 15:52:33,337 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:33,337 INFO : Inserting MMP9

11 May 2020 15:52:33,342 INFO : 48% Done

11 May 2020 15:52:33,546 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:33,546 INFO : Inserting MUC1

11 May 2020 15:52:33,551 INFO : 54% Done

11 May 2020 15:52:33,745 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:33,745 INFO : Inserting NCOA2

11 May 2020 15:52:33,749 INFO : 58% Done

11 May 2020 15:52:33,894 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:33,894 INFO : Inserting PSA

11 May 2020 15:52:33,899 INFO : 66% Done

11 May 2020 15:52:34,131 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:34,131 INFO : Inserting SMAD4

11 May 2020 15:52:34,136 INFO : 70% Done

11 May 2020 15:52:34,293 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:34,293 INFO : Inserting SPINK1

11 May 2020 15:52:34,297 INFO : 75% Done

11 May 2020 15:52:34,490 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:34,490 INFO : 76% Done

11 May 2020 15:52:34,490 INFO : Inserting SPRC

11 May 2020 15:52:34,494 INFO : 80% Done

11 May 2020 15:52:34,650 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:34,650 INFO : Inserting TFF3

11 May 2020 15:52:34,655 INFO : 87% Done

11 May 2020 15:52:34,887 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:34,887 INFO : Inserting TGFB1

11 May 2020 15:52:34,891 INFO : 92% Done

11 May 2020 15:52:35,051 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:35,051 INFO : Inserting VEGFA

11 May 2020 15:52:35,056 INFO : 98% Done

11 May 2020 15:52:35,253 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:35,253 INFO : Done parsing Skyline document.

11 May 2020 15:52:35,255 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:52:35,296 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:52:35,461 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:52:35,522 INFO : Cleaning up temp tables

11 May 2020 15:52:35,527 INFO : Completed import of Skyline document from CPDR-FFPE-ID-745_seg1_2020-01-28_09-58-47.sky.zip

11 May 2020 15:52:35,535 INFO : 100% Done

11 May 2020 15:52:35,546 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80076/CPDR-FFPE-ID-745_seg1_2020-01-28_09-58-47.sky.zip into the system

11 May 2020 15:52:35,546 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80070/CPDR-FFPE-ID-304_seg1_2020-01-28_09-56-41/CPDR-FFPE-ID-304_seg1.skyd into the system

11 May 2020 15:52:35,547 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80070/CPDR-FFPE-ID-304_seg1_2020-01-28_09-56-41/CPDR-FFPE-ID-304_seg1.skyd into the system

11 May 2020 15:52:35,548 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80070/CPDR-FFPE-ID-304_seg1_2020-01-28_09-56-41.sky.zip into the system

11 May 2020 15:52:35,552 INFO : Starting import from CPDR-FFPE-ID-304_seg1_2020-01-28_09-56-41.sky.zip

11 May 2020 15:52:35,559 INFO : Starting to import Skyline document from CPDR-FFPE-ID-304_seg1_2020-01-28_09-56-41.sky.zip

11 May 2020 15:52:35,588 INFO : Expanding CPDR-FFPE-ID-304_seg1.skyd

11 May 2020 15:52:36,395 INFO : Expanding CPDR-FFPE-ID-304_seg1.sky.view

11 May 2020 15:52:36,395 INFO : Expanding CPDR-FFPE-ID-304_seg1.sky

11 May 2020 15:52:36,407 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 15:52:36,410 INFO : 3% Done

11 May 2020 15:52:36,819 INFO : Inserting ANXA2

11 May 2020 15:52:36,823 INFO : 9% Done

11 May 2020 15:52:36,897 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:36,897 INFO : Inserting CAMKK2

11 May 2020 15:52:36,899 INFO : 15% Done

11 May 2020 15:52:36,973 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:36,973 INFO : Inserting CCND1

11 May 2020 15:52:36,975 INFO : 19% Done

11 May 2020 15:52:37,069 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:37,069 INFO : Inserting EGFR

11 May 2020 15:52:37,075 INFO : 25% Done

11 May 2020 15:52:37,317 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:37,317 INFO : Inserting ERG_pan

11 May 2020 15:52:37,324 INFO : 34% Done

11 May 2020 15:52:37,649 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:37,649 INFO : Inserting FOLH1

11 May 2020 15:52:37,654 INFO : 39% Done

11 May 2020 15:52:37,839 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:37,839 INFO : Inserting MMP9

11 May 2020 15:52:37,846 INFO : 47% Done

11 May 2020 15:52:38,133 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:38,134 INFO : Inserting MUC1

11 May 2020 15:52:38,139 INFO : 53% Done

11 May 2020 15:52:38,376 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:38,376 INFO : Inserting NCOA2

11 May 2020 15:52:38,381 INFO : 58% Done

11 May 2020 15:52:38,570 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:38,570 INFO : Inserting PSA

11 May 2020 15:52:38,575 INFO : 64% Done

11 May 2020 15:52:38,776 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:38,776 INFO : Inserting SMAD4

11 May 2020 15:52:38,781 INFO : 67% Done

11 May 2020 15:52:38,921 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:38,921 INFO : Inserting SPINK1

11 May 2020 15:52:38,927 INFO : 74% Done

11 May 2020 15:52:39,216 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:39,216 INFO : Inserting SPRC

11 May 2020 15:52:39,222 INFO : 78% Done

11 May 2020 15:52:39,415 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:39,415 INFO : Inserting TFF3

11 May 2020 15:52:39,422 INFO : 86% Done

11 May 2020 15:52:39,753 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:39,754 INFO : Inserting TGFB1

11 May 2020 15:52:39,758 INFO : 90% Done

11 May 2020 15:52:39,929 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:39,929 INFO : Inserting VEGFA

11 May 2020 15:52:39,936 INFO : 98% Done

11 May 2020 15:52:40,257 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:40,257 INFO : Done parsing Skyline document.

11 May 2020 15:52:40,259 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:52:40,305 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:52:40,524 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:52:40,594 INFO : Cleaning up temp tables

11 May 2020 15:52:40,598 INFO : Completed import of Skyline document from CPDR-FFPE-ID-304_seg1_2020-01-28_09-56-41.sky.zip

11 May 2020 15:52:40,607 INFO : 100% Done

11 May 2020 15:52:40,617 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80070/CPDR-FFPE-ID-304_seg1_2020-01-28_09-56-41.sky.zip into the system

11 May 2020 15:52:40,617 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80065/CPDR-FFPE-ID-105_seg1_2020-01-28_09-54-55/CPDR-FFPE-ID-105_seg1.skyd into the system

11 May 2020 15:52:40,618 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80065/CPDR-FFPE-ID-105_seg1_2020-01-28_09-54-55/CPDR-FFPE-ID-105_seg1.skyd into the system

11 May 2020 15:52:40,619 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80065/CPDR-FFPE-ID-105_seg1_2020-01-28_09-54-55.sky.zip into the system

11 May 2020 15:52:40,623 INFO : Starting import from CPDR-FFPE-ID-105_seg1_2020-01-28_09-54-55.sky.zip

11 May 2020 15:52:40,629 INFO : Starting to import Skyline document from CPDR-FFPE-ID-105_seg1_2020-01-28_09-54-55.sky.zip

11 May 2020 15:52:40,651 INFO : Expanding CPDR-FFPE-ID-105_seg1.skyd

11 May 2020 15:52:41,249 INFO : Expanding CPDR-FFPE-ID-105_seg1.sky.view

11 May 2020 15:52:41,249 INFO : Expanding CPDR-FFPE-ID-105_seg1.sky

11 May 2020 15:52:41,261 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 15:52:41,264 INFO : 3% Done

11 May 2020 15:52:41,643 INFO : Inserting ANXA2

11 May 2020 15:52:41,648 INFO : 10% Done

11 May 2020 15:52:41,723 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:41,723 INFO : Inserting CAMKK2

11 May 2020 15:52:41,725 INFO : 16% Done

11 May 2020 15:52:41,801 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:41,801 INFO : Inserting CCND1

11 May 2020 15:52:41,803 INFO : 22% Done

11 May 2020 15:52:41,871 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:41,871 INFO : Inserting EGFR

11 May 2020 15:52:41,873 INFO : 26% Done

11 May 2020 15:52:41,939 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:41,940 INFO : Inserting ERG_pan

11 May 2020 15:52:41,942 INFO : 34% Done

11 May 2020 15:52:42,054 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:42,054 INFO : Inserting FOLH1

11 May 2020 15:52:42,059 INFO : 40% Done

11 May 2020 15:52:42,260 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:42,261 INFO : 41% Done

11 May 2020 15:52:42,261 INFO : Inserting MMP9

11 May 2020 15:52:42,267 INFO : 48% Done

11 May 2020 15:52:42,512 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:42,513 INFO : Inserting MUC1

11 May 2020 15:52:42,518 INFO : 54% Done

11 May 2020 15:52:42,736 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:42,736 INFO : Inserting NCOA2

11 May 2020 15:52:42,741 INFO : 59% Done

11 May 2020 15:52:42,916 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:42,916 INFO : Inserting PSA

11 May 2020 15:52:42,921 INFO : 65% Done

11 May 2020 15:52:43,147 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:43,147 INFO : 66% Done

11 May 2020 15:52:43,147 INFO : Inserting SMAD4

11 May 2020 15:52:43,152 INFO : 70% Done

11 May 2020 15:52:43,302 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:43,302 INFO : Inserting SPINK1

11 May 2020 15:52:43,307 INFO : 75% Done

11 May 2020 15:52:43,517 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:43,517 INFO : Inserting SPRC

11 May 2020 15:52:43,521 INFO : 79% Done

11 May 2020 15:52:43,693 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:43,693 INFO : Inserting TFF3

11 May 2020 15:52:43,699 INFO : 86% Done

11 May 2020 15:52:43,944 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:43,944 INFO : Inserting TGFB1

11 May 2020 15:52:43,948 INFO : 90% Done

11 May 2020 15:52:44,101 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:44,101 INFO : Inserting VEGFA

11 May 2020 15:52:44,107 INFO : 98% Done

11 May 2020 15:52:44,387 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:44,387 INFO : Done parsing Skyline document.

11 May 2020 15:52:44,389 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:52:44,432 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:52:44,612 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:52:44,680 INFO : Cleaning up temp tables

11 May 2020 15:52:45,283 INFO : Completed import of Skyline document from CPDR-FFPE-ID-105_seg1_2020-01-28_09-54-55.sky.zip

11 May 2020 15:52:45,284 INFO : 100% Done

11 May 2020 15:52:45,296 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80065/CPDR-FFPE-ID-105_seg1_2020-01-28_09-54-55.sky.zip into the system

11 May 2020 15:52:45,296 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80058/CPDR-FFPE-ID-82_seg1_2020-01-28_09-53-29/CPDR-FFPE-ID-82_seg1.skyd into the system

11 May 2020 15:52:45,298 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80058/CPDR-FFPE-ID-82_seg1_2020-01-28_09-53-29/CPDR-FFPE-ID-82_seg1.skyd into the system

11 May 2020 15:52:45,298 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80058/CPDR-FFPE-ID-82_seg1_2020-01-28_09-53-29.sky.zip into the system

11 May 2020 15:52:45,301 INFO : Starting import from CPDR-FFPE-ID-82_seg1_2020-01-28_09-53-29.sky.zip

11 May 2020 15:52:45,308 INFO : Starting to import Skyline document from CPDR-FFPE-ID-82_seg1_2020-01-28_09-53-29.sky.zip

11 May 2020 15:52:45,325 INFO : Expanding CPDR-FFPE-ID-82_seg1.skyd

11 May 2020 15:52:45,891 INFO : Expanding CPDR-FFPE-ID-82_seg1.sky.view

11 May 2020 15:52:45,892 INFO : Expanding CPDR-FFPE-ID-82_seg1.sky

11 May 2020 15:52:45,904 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 15:52:45,907 INFO : 2% Done

11 May 2020 15:52:46,263 INFO : Inserting ANXA2

11 May 2020 15:52:46,267 INFO : 10% Done

11 May 2020 15:52:46,352 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:46,352 INFO : Inserting CAMKK2

11 May 2020 15:52:46,354 INFO : 17% Done

11 May 2020 15:52:46,440 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:46,440 INFO : Inserting CCND1

11 May 2020 15:52:46,442 INFO : 23% Done

11 May 2020 15:52:46,530 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:46,530 INFO : Inserting EGFR

11 May 2020 15:52:46,534 INFO : 27% Done

11 May 2020 15:52:46,712 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:46,713 INFO : Inserting ERG_pan

11 May 2020 15:52:46,718 INFO : 35% Done

11 May 2020 15:52:46,934 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:46,934 INFO : Inserting FOLH1

11 May 2020 15:52:46,939 INFO : 42% Done

11 May 2020 15:52:47,185 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:47,185 INFO : Inserting MMP9

11 May 2020 15:52:47,190 INFO : 48% Done

11 May 2020 15:52:47,388 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:47,388 INFO : Inserting MUC1

11 May 2020 15:52:47,392 INFO : 55% Done

11 May 2020 15:52:47,601 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:47,601 INFO : Inserting NCOA2

11 May 2020 15:52:47,605 INFO : 60% Done

11 May 2020 15:52:47,758 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:47,758 INFO : Inserting PSA

11 May 2020 15:52:47,763 INFO : 66% Done

11 May 2020 15:52:47,975 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:47,975 INFO : Inserting SMAD4

11 May 2020 15:52:47,979 INFO : 71% Done

11 May 2020 15:52:48,137 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:48,138 INFO : Inserting SPINK1

11 May 2020 15:52:48,142 INFO : 75% Done

11 May 2020 15:52:48,309 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:48,309 INFO : Inserting SPRC

11 May 2020 15:52:48,313 INFO : 80% Done

11 May 2020 15:52:48,463 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:48,463 INFO : Inserting TFF3

11 May 2020 15:52:48,468 INFO : 87% Done

11 May 2020 15:52:48,692 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:48,693 INFO : Inserting TGFB1

11 May 2020 15:52:48,697 INFO : 91% Done

11 May 2020 15:52:48,842 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:48,842 INFO : Inserting VEGFA

11 May 2020 15:52:48,846 INFO : 98% Done

11 May 2020 15:52:49,037 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:49,037 INFO : Done parsing Skyline document.

11 May 2020 15:52:49,039 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:52:49,079 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:52:49,238 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:52:49,297 INFO : Cleaning up temp tables

11 May 2020 15:52:49,834 INFO : Completed import of Skyline document from CPDR-FFPE-ID-82_seg1_2020-01-28_09-53-29.sky.zip

11 May 2020 15:52:49,836 INFO : 100% Done

11 May 2020 15:52:49,847 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80058/CPDR-FFPE-ID-82_seg1_2020-01-28_09-53-29.sky.zip into the system

11 May 2020 15:52:49,848 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80052/CPDR-FFPE-ID-14_seg1_2020-01-28_09-51-30/CPDR-FFPE-ID-14_seg1.skyd into the system

11 May 2020 15:52:49,849 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80052/CPDR-FFPE-ID-14_seg1_2020-01-28_09-51-30/CPDR-FFPE-ID-14_seg1.skyd into the system

11 May 2020 15:52:49,849 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80052/CPDR-FFPE-ID-14_seg1_2020-01-28_09-51-30.sky.zip into the system

11 May 2020 15:52:49,854 INFO : Starting import from CPDR-FFPE-ID-14_seg1_2020-01-28_09-51-30.sky.zip

11 May 2020 15:52:49,864 INFO : Starting to import Skyline document from CPDR-FFPE-ID-14_seg1_2020-01-28_09-51-30.sky.zip

11 May 2020 15:52:49,882 INFO : Expanding CPDR-FFPE-ID-14_seg1.skyd

11 May 2020 15:52:50,425 INFO : Expanding CPDR-FFPE-ID-14_seg1.sky.view

11 May 2020 15:52:50,426 INFO : Expanding CPDR-FFPE-ID-14_seg1.sky

11 May 2020 15:52:50,439 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 15:52:50,442 INFO : 2% Done

11 May 2020 15:52:50,730 INFO : Inserting ANXA2

11 May 2020 15:52:50,735 INFO : 10% Done

11 May 2020 15:52:50,806 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:50,806 INFO : Inserting CAMKK2

11 May 2020 15:52:50,808 INFO : 17% Done

11 May 2020 15:52:50,890 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:50,890 INFO : Inserting CCND1

11 May 2020 15:52:50,892 INFO : 22% Done

11 May 2020 15:52:50,949 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:50,949 INFO : Inserting EGFR

11 May 2020 15:52:50,951 INFO : 26% Done

11 May 2020 15:52:51,011 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:51,011 INFO : Inserting ERG_pan

11 May 2020 15:52:51,013 INFO : 32% Done

11 May 2020 15:52:51,167 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:51,168 INFO : Inserting FOLH1

11 May 2020 15:52:51,172 INFO : 40% Done

11 May 2020 15:52:51,373 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:51,373 INFO : Inserting MMP9

11 May 2020 15:52:51,378 INFO : 46% Done

11 May 2020 15:52:51,541 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:51,541 INFO : Inserting MUC1

11 May 2020 15:52:51,546 INFO : 53% Done

11 May 2020 15:52:51,725 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:51,725 INFO : Inserting NCOA2

11 May 2020 15:52:51,729 INFO : 58% Done

11 May 2020 15:52:51,872 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:51,872 INFO : Inserting PSA

11 May 2020 15:52:51,877 INFO : 65% Done

11 May 2020 15:52:52,078 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:52,078 INFO : Inserting SMAD4

11 May 2020 15:52:52,082 INFO : 70% Done

11 May 2020 15:52:52,208 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:52,208 INFO : Inserting SPINK1

11 May 2020 15:52:52,212 INFO : 75% Done

11 May 2020 15:52:52,361 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:52,361 INFO : Inserting SPRC

11 May 2020 15:52:52,365 INFO : 80% Done

11 May 2020 15:52:52,499 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:52,499 INFO : Inserting TFF3

11 May 2020 15:52:52,503 INFO : 87% Done

11 May 2020 15:52:52,704 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:52,705 INFO : Inserting TGFB1

11 May 2020 15:52:52,709 INFO : 92% Done

11 May 2020 15:52:52,905 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:52,905 INFO : Inserting VEGFA

11 May 2020 15:52:52,910 INFO : 98% Done

11 May 2020 15:52:53,082 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:53,083 INFO : Done parsing Skyline document.

11 May 2020 15:52:53,085 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:52:53,124 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:52:53,279 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:52:53,338 INFO : Cleaning up temp tables

11 May 2020 15:52:53,850 INFO : Completed import of Skyline document from CPDR-FFPE-ID-14_seg1_2020-01-28_09-51-30.sky.zip

11 May 2020 15:52:53,852 INFO : 100% Done

11 May 2020 15:52:53,864 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80052/CPDR-FFPE-ID-14_seg1_2020-01-28_09-51-30.sky.zip into the system

11 May 2020 15:52:53,864 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80050/CPDR-FFPE-ID-9_seg1_2020-01-28_09-50-48/CPDR-FFPE-ID-9_seg1.skyd into the system

11 May 2020 15:52:53,866 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80050/CPDR-FFPE-ID-9_seg1_2020-01-28_09-50-48/CPDR-FFPE-ID-9_seg1.skyd into the system

11 May 2020 15:52:53,866 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80050/CPDR-FFPE-ID-9_seg1_2020-01-28_09-50-48.sky.zip into the system

11 May 2020 15:52:53,871 INFO : Starting import from CPDR-FFPE-ID-9_seg1_2020-01-28_09-50-48.sky.zip

11 May 2020 15:52:53,879 INFO : Starting to import Skyline document from CPDR-FFPE-ID-9_seg1_2020-01-28_09-50-48.sky.zip

11 May 2020 15:52:53,903 INFO : Expanding CPDR-FFPE-ID-9_seg1.skyd

11 May 2020 15:52:54,559 INFO : Expanding CPDR-FFPE-ID-9_seg1.sky.view

11 May 2020 15:52:54,559 INFO : Expanding CPDR-FFPE-ID-9_seg1.sky

11 May 2020 15:52:54,565 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 15:52:54,567 INFO : 3% Done

11 May 2020 15:52:55,676 INFO : Inserting ANXA2

11 May 2020 15:52:55,686 INFO : 11% Done

11 May 2020 15:52:55,889 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:55,890 INFO : Inserting CAMKK2

11 May 2020 15:52:55,894 INFO : 17% Done

11 May 2020 15:52:56,075 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:56,075 INFO : Inserting CCND1

11 May 2020 15:52:56,080 INFO : 23% Done

11 May 2020 15:52:56,260 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:56,260 INFO : Inserting EGFR

11 May 2020 15:52:56,264 INFO : 27% Done

11 May 2020 15:52:56,422 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:56,423 INFO : 28% Done

11 May 2020 15:52:56,423 INFO : Inserting ERG_pan

11 May 2020 15:52:56,428 INFO : 35% Done

11 May 2020 15:52:56,660 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:56,660 INFO : Inserting FOLH1

11 May 2020 15:52:56,665 INFO : 41% Done

11 May 2020 15:52:56,901 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:56,901 INFO : Inserting MMP9

11 May 2020 15:52:56,907 INFO : 50% Done

11 May 2020 15:52:57,159 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:57,160 INFO : Inserting MUC1

11 May 2020 15:52:57,168 INFO : 56% Done

11 May 2020 15:52:57,368 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:57,369 INFO : Inserting NCOA2

11 May 2020 15:52:57,373 INFO : 60% Done

11 May 2020 15:52:57,507 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:57,507 INFO : Inserting PSA

11 May 2020 15:52:57,512 INFO : 67% Done

11 May 2020 15:52:57,726 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:57,726 INFO : Inserting SMAD4

11 May 2020 15:52:57,730 INFO : 70% Done

11 May 2020 15:52:57,829 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:57,829 INFO : Inserting SPINK1

11 May 2020 15:52:57,834 INFO : 75% Done

11 May 2020 15:52:58,035 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:58,035 INFO : Inserting SPRC

11 May 2020 15:52:58,039 INFO : 80% Done

11 May 2020 15:52:58,166 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:58,166 INFO : Inserting TFF3

11 May 2020 15:52:58,172 INFO : 87% Done

11 May 2020 15:52:58,390 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:58,390 INFO : Inserting TGFB1

11 May 2020 15:52:58,394 INFO : 91% Done

11 May 2020 15:52:58,518 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:58,518 INFO : Inserting VEGFA

11 May 2020 15:52:58,523 INFO : 98% Done

11 May 2020 15:52:58,738 DEBUG: Total peptides inserted: 1

11 May 2020 15:52:58,738 INFO : Done parsing Skyline document.

11 May 2020 15:52:58,740 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:52:58,782 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:52:58,978 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:52:59,042 INFO : Cleaning up temp tables

11 May 2020 15:52:59,046 INFO : Completed import of Skyline document from CPDR-FFPE-ID-9_seg1_2020-01-28_09-50-48.sky.zip

11 May 2020 15:52:59,054 INFO : 100% Done

11 May 2020 15:52:59,064 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80050/CPDR-FFPE-ID-9_seg1_2020-01-28_09-50-48.sky.zip into the system

11 May 2020 15:52:59,064 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80048/CPDR-FFPE-ID-2_seg1_2020-01-28_09-50-04/CPDR-FFPE-ID-2_seg1.skyd into the system

11 May 2020 15:52:59,066 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80048/CPDR-FFPE-ID-2_seg1_2020-01-28_09-50-04/CPDR-FFPE-ID-2_seg1.skyd into the system

11 May 2020 15:52:59,066 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80048/CPDR-FFPE-ID-2_seg1_2020-01-28_09-50-04.sky.zip into the system

11 May 2020 15:52:59,070 INFO : Starting import from CPDR-FFPE-ID-2_seg1_2020-01-28_09-50-04.sky.zip

11 May 2020 15:52:59,077 INFO : Starting to import Skyline document from CPDR-FFPE-ID-2_seg1_2020-01-28_09-50-04.sky.zip

11 May 2020 15:52:59,094 INFO : Expanding CPDR-FFPE-ID-2_seg1.skyd

11 May 2020 15:52:59,599 INFO : Expanding CPDR-FFPE-ID-2_seg1.sky.view

11 May 2020 15:52:59,599 INFO : Expanding CPDR-FFPE-ID-2_seg1.sky

11 May 2020 15:52:59,610 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 15:52:59,613 INFO : 2% Done

11 May 2020 15:53:00,096 INFO : Inserting ANXA2

11 May 2020 15:53:00,103 INFO : 10% Done

11 May 2020 15:53:00,232 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:00,233 INFO : Inserting CAMKK2

11 May 2020 15:53:00,236 INFO : 16% Done

11 May 2020 15:53:00,365 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:00,365 INFO : Inserting CCND1

11 May 2020 15:53:00,368 INFO : 23% Done

11 May 2020 15:53:00,508 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:00,509 INFO : Inserting EGFR

11 May 2020 15:53:00,512 INFO : 27% Done

11 May 2020 15:53:00,623 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:00,623 INFO : Inserting ERG_pan

11 May 2020 15:53:00,627 INFO : 34% Done

11 May 2020 15:53:00,770 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:00,770 INFO : Inserting FOLH1

11 May 2020 15:53:00,774 INFO : 41% Done

11 May 2020 15:53:00,928 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:00,928 INFO : 42% Done

11 May 2020 15:53:00,928 INFO : Inserting MMP9

11 May 2020 15:53:00,932 INFO : 48% Done

11 May 2020 15:53:01,080 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:01,080 INFO : Inserting MUC1

11 May 2020 15:53:01,085 INFO : 54% Done

11 May 2020 15:53:01,262 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:01,262 INFO : 55% Done

11 May 2020 15:53:01,262 INFO : Inserting NCOA2

11 May 2020 15:53:01,266 INFO : 59% Done

11 May 2020 15:53:01,402 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:01,402 INFO : Inserting PSA

11 May 2020 15:53:01,407 INFO : 66% Done

11 May 2020 15:53:01,600 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:01,600 INFO : Inserting SMAD4

11 May 2020 15:53:01,605 INFO : 71% Done

11 May 2020 15:53:01,762 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:01,763 INFO : Inserting SPINK1

11 May 2020 15:53:01,767 INFO : 76% Done

11 May 2020 15:53:01,918 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:01,918 INFO : Inserting SPRC

11 May 2020 15:53:01,922 INFO : 80% Done

11 May 2020 15:53:02,068 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:02,068 INFO : Inserting TFF3

11 May 2020 15:53:02,073 INFO : 87% Done

11 May 2020 15:53:02,261 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:02,261 INFO : Inserting TGFB1

11 May 2020 15:53:02,265 INFO : 92% Done

11 May 2020 15:53:02,412 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:02,412 INFO : Inserting VEGFA

11 May 2020 15:53:02,417 INFO : 98% Done

11 May 2020 15:53:02,601 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:02,602 INFO : Done parsing Skyline document.

11 May 2020 15:53:02,604 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:53:02,643 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:53:02,801 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:53:02,888 INFO : Cleaning up temp tables

11 May 2020 15:53:02,892 INFO : Completed import of Skyline document from CPDR-FFPE-ID-2_seg1_2020-01-28_09-50-04.sky.zip

11 May 2020 15:53:02,901 INFO : 100% Done

11 May 2020 15:53:02,912 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80048/CPDR-FFPE-ID-2_seg1_2020-01-28_09-50-04.sky.zip into the system

11 May 2020 15:53:02,913 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80090/CPDR-FFPE-ID-90_seg2_2020-01-28_10-05-57/CPDR-FFPE-ID-90_seg2.skyd into the system

11 May 2020 15:53:02,914 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80090/CPDR-FFPE-ID-90_seg2_2020-01-28_10-05-57/CPDR-FFPE-ID-90_seg2.skyd into the system

11 May 2020 15:53:02,914 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80090/CPDR-FFPE-ID-90_seg2_2020-01-28_10-05-57.sky.zip into the system

11 May 2020 15:53:02,919 INFO : Starting import from CPDR-FFPE-ID-90_seg2_2020-01-28_10-05-57.sky.zip

11 May 2020 15:53:02,926 INFO : Starting to import Skyline document from CPDR-FFPE-ID-90_seg2_2020-01-28_10-05-57.sky.zip

11 May 2020 15:53:02,942 INFO : Expanding CPDR-FFPE-ID-90_seg2.skyd

11 May 2020 15:53:03,496 INFO : Expanding CPDR-FFPE-ID-90_seg2.sky.view

11 May 2020 15:53:03,497 INFO : Expanding CPDR-FFPE-ID-90_seg2.sky

11 May 2020 15:53:03,534 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 15:53:03,536 INFO : 1% Done

11 May 2020 15:53:03,777 INFO : Inserting TFF3

11 May 2020 15:53:03,781 INFO : 2% Done

11 May 2020 15:53:03,853 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:03,853 INFO : Inserting AKT1

11 May 2020 15:53:03,855 INFO : 3% Done

11 May 2020 15:53:03,929 INFO : 4% Done

11 May 2020 15:53:04,099 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:04,099 INFO : Inserting AMACR

11 May 2020 15:53:04,104 INFO : 5% Done

11 May 2020 15:53:04,315 INFO : 6% Done

11 May 2020 15:53:04,501 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:04,501 INFO : Inserting ANDR

11 May 2020 15:53:04,506 INFO : 7% Done

11 May 2020 15:53:04,691 INFO : 8% Done

11 May 2020 15:53:04,871 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:04,871 INFO : Inserting ANXA2

11 May 2020 15:53:04,876 INFO : 10% Done

11 May 2020 15:53:05,085 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:05,085 INFO : Inserting AURKA

11 May 2020 15:53:05,089 INFO : 11% Done

11 May 2020 15:53:05,272 INFO : 12% Done

11 May 2020 15:53:05,445 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:05,445 INFO : Inserting BRAF

11 May 2020 15:53:05,450 INFO : 13% Done

11 May 2020 15:53:05,607 INFO : 14% Done

11 May 2020 15:53:05,780 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:05,781 INFO : Inserting CAMKK2

11 May 2020 15:53:05,785 INFO : 15% Done

11 May 2020 15:53:05,984 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:05,985 INFO : Inserting CCND1

11 May 2020 15:53:05,989 INFO : 16% Done

11 May 2020 15:53:06,149 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:06,149 INFO : Inserting CDN1A

11 May 2020 15:53:06,154 INFO : 17% Done

11 May 2020 15:53:06,326 INFO : 18% Done

11 May 2020 15:53:06,502 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:06,503 INFO : Inserting CRISP3

11 May 2020 15:53:06,507 INFO : 19% Done

11 May 2020 15:53:06,703 INFO : 20% Done

11 May 2020 15:53:06,877 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:06,877 INFO : Inserting DCOR

11 May 2020 15:53:06,881 INFO : 21% Done

11 May 2020 15:53:07,049 INFO : 22% Done

11 May 2020 15:53:07,219 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:07,219 INFO : Inserting EGFR

11 May 2020 15:53:07,224 INFO : 23% Done

11 May 2020 15:53:07,418 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:07,418 INFO : Inserting EZH2

11 May 2020 15:53:07,422 INFO : 24% Done

11 May 2020 15:53:07,592 INFO : 25% Done

11 May 2020 15:53:07,755 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:07,756 INFO : Inserting FGFR1

11 May 2020 15:53:07,925 INFO : 26% Done

11 May 2020 15:53:08,095 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:08,096 INFO : Inserting FOLH1

11 May 2020 15:53:08,100 INFO : 27% Done

11 May 2020 15:53:08,280 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:08,280 INFO : Inserting HIF1A

11 May 2020 15:53:08,284 INFO : 28% Done

11 May 2020 15:53:08,454 INFO : 29% Done

11 May 2020 15:53:08,617 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:08,617 INFO : Inserting HPN

11 May 2020 15:53:08,622 INFO : 30% Done

11 May 2020 15:53:08,824 INFO : 31% Done

11 May 2020 15:53:09,014 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:09,015 INFO : Inserting HSPB1

11 May 2020 15:53:09,019 INFO : 33% Done

11 May 2020 15:53:09,226 INFO : 34% Done

11 May 2020 15:53:09,441 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:09,441 INFO : Inserting HXC6

11 May 2020 15:53:09,446 INFO : 35% Done

11 May 2020 15:53:09,635 INFO : 36% Done

11 May 2020 15:53:09,806 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:09,806 INFO : Inserting KLK11

11 May 2020 15:53:09,811 INFO : 37% Done

11 May 2020 15:53:10,018 INFO : 38% Done

11 May 2020 15:53:10,197 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:10,198 INFO : Inserting KLK2

11 May 2020 15:53:10,202 INFO : 39% Done

11 May 2020 15:53:10,400 INFO : 40% Done

11 May 2020 15:53:10,610 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:10,610 INFO : Inserting MMP2

11 May 2020 15:53:10,615 INFO : 42% Done

11 May 2020 15:53:10,824 INFO : 43% Done

11 May 2020 15:53:10,996 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:10,996 INFO : Inserting MMP9

11 May 2020 15:53:11,001 INFO : 44% Done

11 May 2020 15:53:11,196 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:11,196 INFO : Inserting MUC1

11 May 2020 15:53:11,201 INFO : 45% Done

11 May 2020 15:53:11,397 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:11,397 INFO : Inserting MUC6

11 May 2020 15:53:11,401 INFO : 46% Done

11 May 2020 15:53:11,570 INFO : 47% Done

11 May 2020 15:53:11,727 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:11,727 INFO : Inserting MYC

11 May 2020 15:53:11,732 INFO : 48% Done

11 May 2020 15:53:11,891 INFO : 49% Done

11 May 2020 15:53:12,049 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:12,049 INFO : Inserting MYCN

11 May 2020 15:53:12,053 INFO : 50% Done

11 May 2020 15:53:12,223 INFO : 51% Done

11 May 2020 15:53:12,404 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:12,404 INFO : Inserting MYO6

11 May 2020 15:53:12,409 INFO : 52% Done

11 May 2020 15:53:12,626 INFO : 53% Done

11 May 2020 15:53:12,780 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:12,780 INFO : Inserting NCOA2

11 May 2020 15:53:12,785 INFO : 54% Done

11 May 2020 15:53:12,977 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:12,977 INFO : Inserting NPY

11 May 2020 15:53:12,981 INFO : 55% Done

11 May 2020 15:53:13,170 INFO : 56% Done

11 May 2020 15:53:13,380 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:13,380 INFO : Inserting O51E2

11 May 2020 15:53:13,385 INFO : 57% Done

11 May 2020 15:53:13,565 INFO : 58% Done

11 May 2020 15:53:13,749 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:13,750 INFO : Inserting OSTP

11 May 2020 15:53:13,754 INFO : 59% Done

11 May 2020 15:53:13,936 INFO : 60% Done

11 May 2020 15:53:14,106 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:14,107 INFO : Inserting P53

11 May 2020 15:53:14,111 INFO : 61% Done

11 May 2020 15:53:14,283 INFO : 62% Done

11 May 2020 15:53:14,464 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:14,464 INFO : Inserting PAFA

11 May 2020 15:53:14,468 INFO : 63% Done

11 May 2020 15:53:14,642 INFO : 64% Done

11 May 2020 15:53:14,808 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:14,808 INFO : Inserting PGFRB

11 May 2020 15:53:14,813 INFO : 65% Done

11 May 2020 15:53:15,009 INFO : 66% Done

11 May 2020 15:53:15,204 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:15,204 INFO : Inserting PK3CA

11 May 2020 15:53:15,209 INFO : 67% Done

11 May 2020 15:53:15,403 INFO : 68% Done

11 May 2020 15:53:15,610 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:15,610 INFO : Inserting RAF1

11 May 2020 15:53:15,615 INFO : 69% Done

11 May 2020 15:53:15,799 INFO : 71% Done

11 May 2020 15:53:15,986 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:15,986 INFO : Inserting SERPINI1

11 May 2020 15:53:15,991 INFO : 72% Done

11 May 2020 15:53:16,176 INFO : 73% Done

11 May 2020 15:53:16,353 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:16,353 INFO : Inserting SPINK1

11 May 2020 15:53:16,358 INFO : 74% Done

11 May 2020 15:53:16,546 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:16,546 INFO : Inserting SPRC

11 May 2020 15:53:16,705 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:16,705 INFO : Inserting TGFB1

11 May 2020 15:53:16,710 INFO : 75% Done

11 May 2020 15:53:16,908 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:16,908 INFO : Inserting TMPS2

11 May 2020 15:53:16,913 INFO : 76% Done

11 May 2020 15:53:17,127 INFO : 77% Done

11 May 2020 15:53:17,313 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:17,313 INFO : Inserting TPM2

11 May 2020 15:53:17,318 INFO : 78% Done

11 May 2020 15:53:17,508 INFO : 79% Done

11 May 2020 15:53:17,716 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:17,716 INFO : Inserting TWST1

11 May 2020 15:53:17,721 INFO : 80% Done

11 May 2020 15:53:17,900 INFO : 81% Done

11 May 2020 15:53:18,076 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:18,076 INFO : Inserting VEGFA

11 May 2020 15:53:18,080 INFO : 82% Done

11 May 2020 15:53:18,244 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:18,244 INFO : Inserting PSA

11 May 2020 15:53:18,249 INFO : 84% Done

11 May 2020 15:53:18,485 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:18,485 INFO : Inserting ERG_pan

11 May 2020 15:53:18,490 INFO : 85% Done

11 May 2020 15:53:18,674 INFO : 86% Done

11 May 2020 15:53:18,861 INFO : 87% Done

11 May 2020 15:53:19,010 INFO : 88% Done

11 May 2020 15:53:19,190 INFO : 89% Done

11 May 2020 15:53:19,374 INFO : 90% Done

11 May 2020 15:53:19,560 DEBUG: Total peptides inserted: 6

11 May 2020 15:53:19,560 INFO : Inserting ETV1

11 May 2020 15:53:19,565 INFO : 91% Done

11 May 2020 15:53:19,758 INFO : 92% Done

11 May 2020 15:53:19,954 INFO : 93% Done

11 May 2020 15:53:20,187 DEBUG: Total peptides inserted: 3

11 May 2020 15:53:20,187 INFO : Inserting ERG8

11 May 2020 15:53:20,192 INFO : 94% Done

11 May 2020 15:53:20,372 INFO : 95% Done

11 May 2020 15:53:20,576 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:20,576 INFO : Inserting SMAD4

11 May 2020 15:53:20,581 INFO : 96% Done

11 May 2020 15:53:20,779 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:20,779 INFO : Inserting STAT3

11 May 2020 15:53:20,784 INFO : 97% Done

11 May 2020 15:53:21,004 INFO : 98% Done

11 May 2020 15:53:21,204 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:21,204 INFO : Done parsing Skyline document.

11 May 2020 15:53:21,207 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:53:21,334 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:53:22,102 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:53:22,253 INFO : Cleaning up temp tables

11 May 2020 15:53:22,515 INFO : Completed import of Skyline document from CPDR-FFPE-ID-90_seg2_2020-01-28_10-05-57.sky.zip

11 May 2020 15:53:22,516 INFO : 100% Done

11 May 2020 15:53:22,522 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80090/CPDR-FFPE-ID-90_seg2_2020-01-28_10-05-57.sky.zip into the system

11 May 2020 15:53:22,522 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80088/CPDR-FFPE-ID-82_seg2_2020-01-28_10-04-52/CPDR-FFPE-ID-82_seg2.skyd into the system

11 May 2020 15:53:22,523 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80088/CPDR-FFPE-ID-82_seg2_2020-01-28_10-04-52/CPDR-FFPE-ID-82_seg2.skyd into the system

11 May 2020 15:53:22,523 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80088/CPDR-FFPE-ID-82_seg2_2020-01-28_10-04-52.sky.zip into the system

11 May 2020 15:53:22,528 INFO : Starting import from CPDR-FFPE-ID-82_seg2_2020-01-28_10-04-52.sky.zip

11 May 2020 15:53:22,535 INFO : Starting to import Skyline document from CPDR-FFPE-ID-82_seg2_2020-01-28_10-04-52.sky.zip

11 May 2020 15:53:22,553 INFO : Expanding CPDR-FFPE-ID-82_seg2.skyd

11 May 2020 15:53:23,058 INFO : Expanding CPDR-FFPE-ID-82_seg2.sky.view

11 May 2020 15:53:23,059 INFO : Expanding CPDR-FFPE-ID-82_seg2.sky

11 May 2020 15:53:23,081 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 15:53:23,083 INFO : 1% Done

11 May 2020 15:53:23,377 INFO : Inserting TFF3

11 May 2020 15:53:23,395 INFO : 2% Done

11 May 2020 15:53:23,551 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:23,551 INFO : Inserting AKT1

11 May 2020 15:53:23,553 INFO : 3% Done

11 May 2020 15:53:23,710 INFO : 4% Done

11 May 2020 15:53:23,886 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:23,887 INFO : Inserting AMACR

11 May 2020 15:53:23,889 INFO : 5% Done

11 May 2020 15:53:24,057 INFO : 6% Done

11 May 2020 15:53:24,218 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:24,218 INFO : Inserting ANDR

11 May 2020 15:53:24,221 INFO : 7% Done

11 May 2020 15:53:24,362 INFO : 8% Done

11 May 2020 15:53:24,504 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:24,505 INFO : Inserting ANXA2

11 May 2020 15:53:24,507 INFO : 9% Done

11 May 2020 15:53:24,686 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:24,686 INFO : Inserting AURKA

11 May 2020 15:53:24,691 INFO : 10% Done

11 May 2020 15:53:24,845 INFO : 11% Done

11 May 2020 15:53:25,013 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:25,013 INFO : 12% Done

11 May 2020 15:53:25,013 INFO : Inserting BRAF

11 May 2020 15:53:25,194 INFO : 14% Done

11 May 2020 15:53:25,393 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:25,394 INFO : Inserting CAMKK2

11 May 2020 15:53:25,399 INFO : 15% Done

11 May 2020 15:53:25,616 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:25,616 INFO : Inserting CCND1

11 May 2020 15:53:25,621 INFO : 16% Done

11 May 2020 15:53:25,803 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:25,803 INFO : Inserting CDN1A

11 May 2020 15:53:25,807 INFO : 17% Done

11 May 2020 15:53:25,983 INFO : 18% Done

11 May 2020 15:53:26,177 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:26,177 INFO : Inserting CRISP3

11 May 2020 15:53:26,182 INFO : 19% Done

11 May 2020 15:53:26,379 INFO : 20% Done

11 May 2020 15:53:26,550 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:26,550 INFO : Inserting DCOR

11 May 2020 15:53:26,554 INFO : 21% Done

11 May 2020 15:53:26,741 INFO : 22% Done

11 May 2020 15:53:26,919 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:26,919 INFO : Inserting EGFR

11 May 2020 15:53:26,924 INFO : 23% Done

11 May 2020 15:53:27,115 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:27,115 INFO : Inserting EZH2

11 May 2020 15:53:27,119 INFO : 24% Done

11 May 2020 15:53:27,304 INFO : 25% Done

11 May 2020 15:53:27,465 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:27,465 INFO : Inserting FGFR1

11 May 2020 15:53:27,652 INFO : 26% Done

11 May 2020 15:53:27,833 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:27,833 INFO : Inserting FOLH1

11 May 2020 15:53:27,837 INFO : 27% Done

11 May 2020 15:53:28,023 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:28,024 INFO : Inserting HIF1A

11 May 2020 15:53:28,028 INFO : 28% Done

11 May 2020 15:53:28,210 INFO : 29% Done

11 May 2020 15:53:28,376 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:28,376 INFO : Inserting HPN

11 May 2020 15:53:28,380 INFO : 30% Done

11 May 2020 15:53:28,594 INFO : 31% Done

11 May 2020 15:53:28,775 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:28,775 INFO : Inserting HSPB1

11 May 2020 15:53:28,780 INFO : 33% Done

11 May 2020 15:53:28,990 INFO : 34% Done

11 May 2020 15:53:29,198 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:29,198 INFO : Inserting HXC6

11 May 2020 15:53:29,203 INFO : 35% Done

11 May 2020 15:53:29,377 INFO : 36% Done

11 May 2020 15:53:29,543 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:29,543 INFO : Inserting KLK11

11 May 2020 15:53:29,548 INFO : 37% Done

11 May 2020 15:53:29,760 INFO : 38% Done

11 May 2020 15:53:29,938 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:29,938 INFO : Inserting KLK2

11 May 2020 15:53:29,943 INFO : 39% Done

11 May 2020 15:53:30,146 INFO : 40% Done

11 May 2020 15:53:30,324 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:30,324 INFO : Inserting MMP2

11 May 2020 15:53:30,329 INFO : 41% Done

11 May 2020 15:53:30,523 INFO : 42% Done

11 May 2020 15:53:30,708 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:30,708 INFO : Inserting MMP9

11 May 2020 15:53:30,713 INFO : 43% Done

11 May 2020 15:53:30,892 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:30,892 INFO : Inserting MUC1

11 May 2020 15:53:30,897 INFO : 45% Done

11 May 2020 15:53:31,086 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:31,086 INFO : Inserting MUC6

11 May 2020 15:53:31,243 INFO : 46% Done

11 May 2020 15:53:31,406 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:31,406 INFO : Inserting MYC

11 May 2020 15:53:31,410 INFO : 47% Done

11 May 2020 15:53:31,580 INFO : 48% Done

11 May 2020 15:53:31,753 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:31,753 INFO : Inserting MYCN

11 May 2020 15:53:31,758 INFO : 49% Done

11 May 2020 15:53:31,946 INFO : 51% Done

11 May 2020 15:53:32,135 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:32,135 INFO : Inserting MYO6

11 May 2020 15:53:32,140 INFO : 52% Done

11 May 2020 15:53:32,351 INFO : 53% Done

11 May 2020 15:53:32,520 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:32,520 INFO : Inserting NCOA2

11 May 2020 15:53:32,525 INFO : 54% Done

11 May 2020 15:53:32,718 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:32,718 INFO : Inserting NPY

11 May 2020 15:53:32,723 INFO : 55% Done

11 May 2020 15:53:32,943 INFO : 56% Done

11 May 2020 15:53:33,143 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:33,143 INFO : Inserting O51E2

11 May 2020 15:53:33,148 INFO : 57% Done

11 May 2020 15:53:33,317 INFO : 58% Done

11 May 2020 15:53:33,520 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:33,520 INFO : Inserting OSTP

11 May 2020 15:53:33,525 INFO : 59% Done

11 May 2020 15:53:33,714 INFO : 60% Done

11 May 2020 15:53:33,881 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:33,882 INFO : Inserting P53

11 May 2020 15:53:33,886 INFO : 61% Done

11 May 2020 15:53:34,043 INFO : 62% Done

11 May 2020 15:53:34,227 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:34,228 INFO : Inserting PAFA

11 May 2020 15:53:34,232 INFO : 63% Done

11 May 2020 15:53:34,413 INFO : 64% Done

11 May 2020 15:53:34,584 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:34,584 INFO : Inserting PGFRB

11 May 2020 15:53:34,588 INFO : 65% Done

11 May 2020 15:53:34,783 INFO : 66% Done

11 May 2020 15:53:34,971 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:34,971 INFO : Inserting PK3CA

11 May 2020 15:53:34,975 INFO : 67% Done

11 May 2020 15:53:35,226 INFO : 68% Done

11 May 2020 15:53:35,398 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:35,398 INFO : Inserting RAF1

11 May 2020 15:53:35,403 INFO : 69% Done

11 May 2020 15:53:35,639 INFO : 70% Done

11 May 2020 15:53:35,846 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:35,846 INFO : Inserting SERPINI1

11 May 2020 15:53:35,851 INFO : 71% Done

11 May 2020 15:53:36,046 INFO : 72% Done

11 May 2020 15:53:36,204 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:36,204 INFO : Inserting SPINK1

11 May 2020 15:53:36,208 INFO : 73% Done

11 May 2020 15:53:36,395 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:36,395 INFO : Inserting SPRC

11 May 2020 15:53:36,400 INFO : 74% Done

11 May 2020 15:53:36,566 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:36,566 INFO : Inserting TGFB1

11 May 2020 15:53:36,568 INFO : 75% Done

11 May 2020 15:53:36,766 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:36,766 INFO : Inserting TMPS2

11 May 2020 15:53:36,771 INFO : 76% Done

11 May 2020 15:53:37,001 INFO : 77% Done

11 May 2020 15:53:37,233 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:37,234 INFO : Inserting TPM2

11 May 2020 15:53:37,238 INFO : 78% Done

11 May 2020 15:53:37,455 INFO : 79% Done

11 May 2020 15:53:37,684 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:37,684 INFO : Inserting TWST1

11 May 2020 15:53:37,689 INFO : 80% Done

11 May 2020 15:53:37,878 INFO : 81% Done

11 May 2020 15:53:38,055 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:38,055 INFO : Inserting VEGFA

11 May 2020 15:53:38,059 INFO : 82% Done

11 May 2020 15:53:38,253 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:38,253 INFO : Inserting PSA

11 May 2020 15:53:38,258 INFO : 84% Done

11 May 2020 15:53:38,495 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:38,496 INFO : Inserting ERG_pan

11 May 2020 15:53:38,500 INFO : 85% Done

11 May 2020 15:53:38,665 INFO : 86% Done

11 May 2020 15:53:38,826 INFO : 87% Done

11 May 2020 15:53:39,154 INFO : 88% Done

11 May 2020 15:53:39,325 INFO : 90% Done

11 May 2020 15:53:39,534 DEBUG: Total peptides inserted: 6

11 May 2020 15:53:39,534 INFO : Inserting ETV1

11 May 2020 15:53:39,539 INFO : 91% Done

11 May 2020 15:53:39,797 INFO : 92% Done

11 May 2020 15:53:39,995 INFO : 93% Done

11 May 2020 15:53:40,188 DEBUG: Total peptides inserted: 3

11 May 2020 15:53:40,188 INFO : Inserting ERG8

11 May 2020 15:53:40,193 INFO : 94% Done

11 May 2020 15:53:40,383 INFO : 95% Done

11 May 2020 15:53:40,574 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:40,574 INFO : Inserting SMAD4

11 May 2020 15:53:40,578 INFO : 96% Done

11 May 2020 15:53:40,765 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:40,765 INFO : Inserting STAT3

11 May 2020 15:53:40,769 INFO : 97% Done

11 May 2020 15:53:40,958 INFO : 98% Done

11 May 2020 15:53:41,139 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:41,139 INFO : Done parsing Skyline document.

11 May 2020 15:53:41,141 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:53:41,269 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:53:42,124 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:53:42,401 INFO : Cleaning up temp tables

11 May 2020 15:53:42,860 INFO : Completed import of Skyline document from CPDR-FFPE-ID-82_seg2_2020-01-28_10-04-52.sky.zip

11 May 2020 15:53:42,861 INFO : 100% Done

11 May 2020 15:53:42,870 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80088/CPDR-FFPE-ID-82_seg2_2020-01-28_10-04-52.sky.zip into the system

11 May 2020 15:53:42,870 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80081/CPDR-FFPE-ID-13_seg2_2020-01-28_10-01-19/CPDR-FFPE-ID-13_seg2.skyd into the system

11 May 2020 15:53:42,872 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80081/CPDR-FFPE-ID-13_seg2_2020-01-28_10-01-19/CPDR-FFPE-ID-13_seg2.skyd into the system

11 May 2020 15:53:42,872 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80081/CPDR-FFPE-ID-13_seg2_2020-01-28_10-01-19.sky.zip into the system

11 May 2020 15:53:42,877 INFO : Starting import from CPDR-FFPE-ID-13_seg2_2020-01-28_10-01-19.sky.zip

11 May 2020 15:53:42,884 INFO : Starting to import Skyline document from CPDR-FFPE-ID-13_seg2_2020-01-28_10-01-19.sky.zip

11 May 2020 15:53:42,904 INFO : Expanding CPDR-FFPE-ID-13_seg2.skyd

11 May 2020 15:53:43,474 INFO : Expanding CPDR-FFPE-ID-13_seg2.sky.view

11 May 2020 15:53:43,475 INFO : Expanding CPDR-FFPE-ID-13_seg2.sky

11 May 2020 15:53:43,525 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 15:53:43,528 INFO : 1% Done

11 May 2020 15:53:43,835 INFO : Inserting TFF3

11 May 2020 15:53:43,842 INFO : 2% Done

11 May 2020 15:53:44,018 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:44,018 INFO : Inserting AKT1

11 May 2020 15:53:44,020 INFO : 3% Done

11 May 2020 15:53:44,202 INFO : 4% Done

11 May 2020 15:53:44,418 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:44,418 INFO : Inserting AMACR

11 May 2020 15:53:44,423 INFO : 5% Done

11 May 2020 15:53:44,635 INFO : 6% Done

11 May 2020 15:53:44,886 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:44,886 INFO : Inserting ANDR

11 May 2020 15:53:44,891 INFO : 7% Done

11 May 2020 15:53:45,084 INFO : 8% Done

11 May 2020 15:53:45,262 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:45,262 INFO : Inserting ANXA2

11 May 2020 15:53:45,267 INFO : 10% Done

11 May 2020 15:53:45,477 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:45,478 INFO : Inserting AURKA

11 May 2020 15:53:45,482 INFO : 11% Done

11 May 2020 15:53:45,668 INFO : 12% Done

11 May 2020 15:53:45,847 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:45,847 INFO : Inserting BRAF

11 May 2020 15:53:45,851 INFO : 13% Done

11 May 2020 15:53:46,016 INFO : 14% Done

11 May 2020 15:53:46,198 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:46,199 INFO : Inserting CAMKK2

11 May 2020 15:53:46,203 INFO : 15% Done

11 May 2020 15:53:46,407 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:46,408 INFO : Inserting CCND1

11 May 2020 15:53:46,412 INFO : 16% Done

11 May 2020 15:53:46,600 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:46,600 INFO : Inserting CDN1A

11 May 2020 15:53:46,605 INFO : 17% Done

11 May 2020 15:53:46,814 INFO : 18% Done

11 May 2020 15:53:47,033 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:47,033 INFO : Inserting CRISP3

11 May 2020 15:53:47,038 INFO : 19% Done

11 May 2020 15:53:47,245 INFO : 20% Done

11 May 2020 15:53:47,446 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:47,446 INFO : Inserting DCOR

11 May 2020 15:53:47,450 INFO : 21% Done

11 May 2020 15:53:47,624 INFO : 22% Done

11 May 2020 15:53:47,790 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:47,790 INFO : Inserting EGFR

11 May 2020 15:53:47,795 INFO : 23% Done

11 May 2020 15:53:47,998 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:47,998 INFO : Inserting EZH2

11 May 2020 15:53:48,003 INFO : 24% Done

11 May 2020 15:53:48,212 INFO : 25% Done

11 May 2020 15:53:48,391 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:48,391 INFO : Inserting FGFR1

11 May 2020 15:53:48,560 INFO : 26% Done

11 May 2020 15:53:48,652 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:48,652 INFO : Inserting FOLH1

11 May 2020 15:53:48,654 INFO : 27% Done

11 May 2020 15:53:48,732 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:48,732 INFO : Inserting HIF1A

11 May 2020 15:53:48,734 INFO : 28% Done

11 May 2020 15:53:48,819 INFO : 29% Done

11 May 2020 15:53:48,903 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:48,903 INFO : Inserting HPN

11 May 2020 15:53:48,905 INFO : 30% Done

11 May 2020 15:53:48,988 INFO : 31% Done

11 May 2020 15:53:49,078 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:49,079 INFO : Inserting HSPB1

11 May 2020 15:53:49,081 INFO : 32% Done

11 May 2020 15:53:49,183 INFO : 34% Done

11 May 2020 15:53:50,018 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:50,018 INFO : Inserting HXC6

11 May 2020 15:53:50,023 INFO : 35% Done

11 May 2020 15:53:50,119 INFO : 36% Done

11 May 2020 15:53:50,212 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:50,212 INFO : Inserting KLK11

11 May 2020 15:53:50,215 INFO : 37% Done

11 May 2020 15:53:50,315 INFO : 38% Done

11 May 2020 15:53:50,396 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:50,396 INFO : Inserting KLK2

11 May 2020 15:53:50,398 INFO : 39% Done

11 May 2020 15:53:50,494 INFO : 40% Done

11 May 2020 15:53:50,579 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:50,579 INFO : Inserting MMP2

11 May 2020 15:53:50,582 INFO : 41% Done

11 May 2020 15:53:50,675 INFO : 42% Done

11 May 2020 15:53:50,802 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:50,802 INFO : Inserting MMP9

11 May 2020 15:53:50,805 INFO : 43% Done

11 May 2020 15:53:50,885 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:50,885 INFO : Inserting MUC1

11 May 2020 15:53:50,887 INFO : 44% Done

11 May 2020 15:53:50,968 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:50,968 INFO : Inserting MUC6

11 May 2020 15:53:50,970 INFO : 45% Done

11 May 2020 15:53:51,044 INFO : 46% Done

11 May 2020 15:53:51,116 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:51,116 INFO : Inserting MYC

11 May 2020 15:53:51,118 INFO : 47% Done

11 May 2020 15:53:51,190 INFO : 48% Done

11 May 2020 15:53:51,263 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:51,263 INFO : Inserting MYCN

11 May 2020 15:53:51,264 INFO : 49% Done

11 May 2020 15:53:51,339 INFO : 50% Done

11 May 2020 15:53:51,411 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:51,411 INFO : Inserting MYO6

11 May 2020 15:53:51,413 INFO : 52% Done

11 May 2020 15:53:51,496 INFO : 53% Done

11 May 2020 15:53:51,574 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:51,575 INFO : Inserting NCOA2

11 May 2020 15:53:51,577 INFO : 54% Done

11 May 2020 15:53:51,656 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:51,656 INFO : Inserting NPY

11 May 2020 15:53:51,658 INFO : 55% Done

11 May 2020 15:53:51,757 INFO : 56% Done

11 May 2020 15:53:51,843 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:51,843 INFO : Inserting O51E2

11 May 2020 15:53:51,846 INFO : 57% Done

11 May 2020 15:53:51,947 INFO : 58% Done

11 May 2020 15:53:52,074 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:52,074 INFO : Inserting OSTP

11 May 2020 15:53:52,079 INFO : 59% Done

11 May 2020 15:53:52,270 INFO : 60% Done

11 May 2020 15:53:52,479 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:52,479 INFO : Inserting P53

11 May 2020 15:53:52,484 INFO : 61% Done

11 May 2020 15:53:52,680 INFO : 62% Done

11 May 2020 15:53:52,887 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:52,887 INFO : Inserting PAFA

11 May 2020 15:53:52,892 INFO : 63% Done

11 May 2020 15:53:53,106 INFO : 64% Done

11 May 2020 15:53:53,298 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:53,299 INFO : Inserting PGFRB

11 May 2020 15:53:53,303 INFO : 65% Done

11 May 2020 15:53:53,517 INFO : 66% Done

11 May 2020 15:53:53,739 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:53,739 INFO : Inserting PK3CA

11 May 2020 15:53:53,744 INFO : 67% Done

11 May 2020 15:53:53,955 INFO : 68% Done

11 May 2020 15:53:54,151 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:54,151 INFO : Inserting RAF1

11 May 2020 15:53:54,156 INFO : 70% Done

11 May 2020 15:53:54,368 INFO : 71% Done

11 May 2020 15:53:54,581 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:54,582 INFO : Inserting SERPINI1

11 May 2020 15:53:54,587 INFO : 72% Done

11 May 2020 15:53:54,782 INFO : 73% Done

11 May 2020 15:53:54,970 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:54,971 INFO : Inserting SPINK1

11 May 2020 15:53:54,975 INFO : 74% Done

11 May 2020 15:53:55,157 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:55,157 INFO : Inserting SPRC

11 May 2020 15:53:55,354 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:55,354 INFO : Inserting TGFB1

11 May 2020 15:53:55,360 INFO : 75% Done

11 May 2020 15:53:55,564 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:55,565 INFO : Inserting TMPS2

11 May 2020 15:53:55,570 INFO : 76% Done

11 May 2020 15:53:55,790 INFO : 77% Done

11 May 2020 15:53:55,998 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:55,998 INFO : Inserting TPM2

11 May 2020 15:53:56,003 INFO : 78% Done

11 May 2020 15:53:56,175 INFO : 79% Done

11 May 2020 15:53:56,368 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:56,368 INFO : Inserting TWST1

11 May 2020 15:53:56,373 INFO : 80% Done

11 May 2020 15:53:56,533 INFO : 81% Done

11 May 2020 15:53:56,696 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:56,696 INFO : Inserting VEGFA

11 May 2020 15:53:56,701 INFO : 82% Done

11 May 2020 15:53:56,869 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:56,869 INFO : Inserting PSA

11 May 2020 15:53:56,874 INFO : 84% Done

11 May 2020 15:53:57,067 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:57,067 INFO : Inserting ERG_pan

11 May 2020 15:53:57,072 INFO : 85% Done

11 May 2020 15:53:57,214 INFO : 86% Done

11 May 2020 15:53:57,362 INFO : 87% Done

11 May 2020 15:53:57,493 INFO : 88% Done

11 May 2020 15:53:57,646 INFO : 89% Done

11 May 2020 15:53:57,816 INFO : 90% Done

11 May 2020 15:53:57,965 DEBUG: Total peptides inserted: 6

11 May 2020 15:53:57,966 INFO : Inserting ETV1

11 May 2020 15:53:57,970 INFO : 91% Done

11 May 2020 15:53:58,142 INFO : 92% Done

11 May 2020 15:53:58,318 INFO : 93% Done

11 May 2020 15:53:58,498 DEBUG: Total peptides inserted: 3

11 May 2020 15:53:58,498 INFO : Inserting ERG8

11 May 2020 15:53:58,502 INFO : 94% Done

11 May 2020 15:53:58,678 INFO : 95% Done

11 May 2020 15:53:58,875 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:58,875 INFO : Inserting SMAD4

11 May 2020 15:53:58,879 INFO : 96% Done

11 May 2020 15:53:59,066 DEBUG: Total peptides inserted: 1

11 May 2020 15:53:59,066 INFO : Inserting STAT3

11 May 2020 15:53:59,125 INFO : 97% Done

11 May 2020 15:53:59,333 INFO : 98% Done

11 May 2020 15:53:59,509 DEBUG: Total peptides inserted: 2

11 May 2020 15:53:59,509 INFO : Done parsing Skyline document.

11 May 2020 15:53:59,511 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:53:59,646 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:54:00,240 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:54:00,396 INFO : Cleaning up temp tables

11 May 2020 15:54:00,685 INFO : Completed import of Skyline document from CPDR-FFPE-ID-13_seg2_2020-01-28_10-01-19.sky.zip

11 May 2020 15:54:00,686 INFO : 100% Done

11 May 2020 15:54:00,694 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80081/CPDR-FFPE-ID-13_seg2_2020-01-28_10-01-19.sky.zip into the system

11 May 2020 15:54:00,694 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80079/CPDR-FFPE-ID-8_seg2_2020-01-28_10-00-10/CPDR-FFPE-ID-8_seg2.skyd into the system

11 May 2020 15:54:00,695 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80079/CPDR-FFPE-ID-8_seg2_2020-01-28_10-00-10/CPDR-FFPE-ID-8_seg2.skyd into the system

11 May 2020 15:54:00,695 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80079/CPDR-FFPE-ID-8_seg2_2020-01-28_10-00-10.sky.zip into the system

11 May 2020 15:54:00,698 INFO : Starting import from CPDR-FFPE-ID-8_seg2_2020-01-28_10-00-10.sky.zip

11 May 2020 15:54:00,702 INFO : Starting to import Skyline document from CPDR-FFPE-ID-8_seg2_2020-01-28_10-00-10.sky.zip

11 May 2020 15:54:00,716 INFO : Expanding CPDR-FFPE-ID-8_seg2.skyd

11 May 2020 15:54:01,155 INFO : Expanding CPDR-FFPE-ID-8_seg2.sky.view

11 May 2020 15:54:01,156 INFO : Expanding CPDR-FFPE-ID-8_seg2.sky

11 May 2020 15:54:01,196 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 15:54:01,199 INFO : 1% Done

11 May 2020 15:54:01,707 INFO : Inserting TFF3

11 May 2020 15:54:01,713 INFO : 2% Done

11 May 2020 15:54:01,873 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:01,873 INFO : Inserting AKT1

11 May 2020 15:54:01,876 INFO : 3% Done

11 May 2020 15:54:02,053 INFO : 4% Done

11 May 2020 15:54:02,245 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:02,245 INFO : Inserting AMACR

11 May 2020 15:54:02,248 INFO : 5% Done

11 May 2020 15:54:02,419 INFO : 6% Done

11 May 2020 15:54:02,593 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:02,593 INFO : Inserting ANDR

11 May 2020 15:54:02,595 INFO : 7% Done

11 May 2020 15:54:02,761 INFO : 8% Done

11 May 2020 15:54:02,931 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:02,931 INFO : Inserting ANXA2

11 May 2020 15:54:02,934 INFO : 9% Done

11 May 2020 15:54:03,125 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:03,125 INFO : Inserting AURKA

11 May 2020 15:54:03,129 INFO : 11% Done

11 May 2020 15:54:03,300 INFO : 12% Done

11 May 2020 15:54:03,572 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:03,572 INFO : Inserting BRAF

11 May 2020 15:54:03,577 INFO : 13% Done

11 May 2020 15:54:03,759 INFO : 14% Done

11 May 2020 15:54:03,955 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:03,955 INFO : Inserting CAMKK2

11 May 2020 15:54:03,960 INFO : 15% Done

11 May 2020 15:54:04,181 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:04,181 INFO : Inserting CCND1

11 May 2020 15:54:04,186 INFO : 16% Done

11 May 2020 15:54:04,366 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:04,367 INFO : Inserting CDN1A

11 May 2020 15:54:04,388 INFO : 17% Done

11 May 2020 15:54:04,576 INFO : 18% Done

11 May 2020 15:54:04,769 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:04,770 INFO : Inserting CRISP3

11 May 2020 15:54:04,775 INFO : 19% Done

11 May 2020 15:54:04,985 INFO : 20% Done

11 May 2020 15:54:05,168 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:05,168 INFO : Inserting DCOR

11 May 2020 15:54:05,171 INFO : 21% Done

11 May 2020 15:54:05,335 INFO : 22% Done

11 May 2020 15:54:05,508 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:05,508 INFO : Inserting EGFR

11 May 2020 15:54:05,511 INFO : 23% Done

11 May 2020 15:54:05,674 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:05,675 INFO : Inserting EZH2

11 May 2020 15:54:05,677 INFO : 24% Done

11 May 2020 15:54:05,825 INFO : 25% Done

11 May 2020 15:54:05,954 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:05,954 INFO : Inserting FGFR1

11 May 2020 15:54:06,103 INFO : 26% Done

11 May 2020 15:54:06,233 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:06,233 INFO : Inserting FOLH1

11 May 2020 15:54:06,235 INFO : 27% Done

11 May 2020 15:54:06,373 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:06,373 INFO : Inserting HIF1A

11 May 2020 15:54:06,375 INFO : 28% Done

11 May 2020 15:54:06,522 INFO : 30% Done

11 May 2020 15:54:06,645 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:06,645 INFO : Inserting HPN

11 May 2020 15:54:06,647 INFO : 31% Done

11 May 2020 15:54:06,776 INFO : 32% Done

11 May 2020 15:54:06,907 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:06,907 INFO : Inserting HSPB1

11 May 2020 15:54:06,910 INFO : 33% Done

11 May 2020 15:54:07,070 INFO : 34% Done

11 May 2020 15:54:07,237 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:07,237 INFO : Inserting HXC6

11 May 2020 15:54:07,242 INFO : 35% Done

11 May 2020 15:54:07,376 INFO : 36% Done

11 May 2020 15:54:07,504 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:07,504 INFO : Inserting KLK11

11 May 2020 15:54:07,509 INFO : 38% Done

11 May 2020 15:54:07,710 INFO : 39% Done

11 May 2020 15:54:07,885 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:07,885 INFO : Inserting KLK2

11 May 2020 15:54:07,890 INFO : 40% Done

11 May 2020 15:54:08,088 INFO : 41% Done

11 May 2020 15:54:08,282 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:08,282 INFO : Inserting MMP2

11 May 2020 15:54:08,287 INFO : 42% Done

11 May 2020 15:54:08,478 INFO : 43% Done

11 May 2020 15:54:08,667 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:08,667 INFO : Inserting MMP9

11 May 2020 15:54:08,672 INFO : 44% Done

11 May 2020 15:54:08,876 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:08,876 INFO : Inserting MUC1

11 May 2020 15:54:08,880 INFO : 45% Done

11 May 2020 15:54:09,055 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:09,055 INFO : Inserting MUC6

11 May 2020 15:54:09,059 INFO : 46% Done

11 May 2020 15:54:09,240 INFO : 47% Done

11 May 2020 15:54:09,416 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:09,416 INFO : Inserting MYC

11 May 2020 15:54:09,420 INFO : 48% Done

11 May 2020 15:54:09,599 INFO : 49% Done

11 May 2020 15:54:09,764 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:09,764 INFO : Inserting MYCN

11 May 2020 15:54:09,769 INFO : 50% Done

11 May 2020 15:54:09,931 INFO : 51% Done

11 May 2020 15:54:10,113 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:10,113 INFO : Inserting MYO6

11 May 2020 15:54:10,118 INFO : 52% Done

11 May 2020 15:54:10,315 INFO : 53% Done

11 May 2020 15:54:10,475 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:10,475 INFO : Inserting NCOA2

11 May 2020 15:54:10,480 INFO : 54% Done

11 May 2020 15:54:10,663 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:10,664 INFO : Inserting NPY

11 May 2020 15:54:10,668 INFO : 55% Done

11 May 2020 15:54:10,855 INFO : 56% Done

11 May 2020 15:54:11,047 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:11,047 INFO : Inserting O51E2

11 May 2020 15:54:11,051 INFO : 57% Done

11 May 2020 15:54:11,223 INFO : 58% Done

11 May 2020 15:54:11,398 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:11,398 INFO : Inserting OSTP

11 May 2020 15:54:11,402 INFO : 59% Done

11 May 2020 15:54:11,589 INFO : 60% Done

11 May 2020 15:54:11,754 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:11,754 INFO : Inserting P53

11 May 2020 15:54:11,758 INFO : 61% Done

11 May 2020 15:54:11,947 INFO : 62% Done

11 May 2020 15:54:12,138 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:12,138 INFO : Inserting PAFA

11 May 2020 15:54:12,142 INFO : 63% Done

11 May 2020 15:54:12,317 INFO : 64% Done

11 May 2020 15:54:12,486 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:12,486 INFO : Inserting PGFRB

11 May 2020 15:54:12,491 INFO : 65% Done

11 May 2020 15:54:12,670 INFO : 66% Done

11 May 2020 15:54:12,852 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:12,852 INFO : Inserting PK3CA

11 May 2020 15:54:12,856 INFO : 68% Done

11 May 2020 15:54:13,048 INFO : 69% Done

11 May 2020 15:54:13,229 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:13,230 INFO : Inserting RAF1

11 May 2020 15:54:13,234 INFO : 70% Done

11 May 2020 15:54:13,452 INFO : 71% Done

11 May 2020 15:54:13,656 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:13,656 INFO : Inserting SERPINI1

11 May 2020 15:54:13,660 INFO : 72% Done

11 May 2020 15:54:13,857 INFO : 73% Done

11 May 2020 15:54:14,036 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:14,036 INFO : Inserting SPINK1

11 May 2020 15:54:14,040 INFO : 74% Done

11 May 2020 15:54:14,194 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:14,194 INFO : Inserting SPRC

11 May 2020 15:54:14,351 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:14,352 INFO : Inserting TGFB1

11 May 2020 15:54:14,356 INFO : 75% Done

11 May 2020 15:54:14,545 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:14,545 INFO : Inserting TMPS2

11 May 2020 15:54:14,549 INFO : 76% Done

11 May 2020 15:54:14,762 INFO : 77% Done

11 May 2020 15:54:14,953 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:14,953 INFO : Inserting TPM2

11 May 2020 15:54:14,958 INFO : 78% Done

11 May 2020 15:54:15,169 INFO : 79% Done

11 May 2020 15:54:15,388 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:15,388 INFO : Inserting TWST1

11 May 2020 15:54:15,393 INFO : 80% Done

11 May 2020 15:54:15,589 INFO : 81% Done

11 May 2020 15:54:15,777 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:15,777 INFO : Inserting VEGFA

11 May 2020 15:54:15,781 INFO : 82% Done

11 May 2020 15:54:15,968 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:15,969 INFO : Inserting PSA

11 May 2020 15:54:15,974 INFO : 84% Done

11 May 2020 15:54:16,201 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:16,201 INFO : Inserting ERG_pan

11 May 2020 15:54:16,206 INFO : 85% Done

11 May 2020 15:54:16,398 INFO : 86% Done

11 May 2020 15:54:16,581 INFO : 87% Done

11 May 2020 15:54:16,749 INFO : 88% Done

11 May 2020 15:54:16,957 INFO : 89% Done

11 May 2020 15:54:17,150 INFO : 90% Done

11 May 2020 15:54:17,313 DEBUG: Total peptides inserted: 6

11 May 2020 15:54:17,313 INFO : Inserting ETV1

11 May 2020 15:54:17,317 INFO : 91% Done

11 May 2020 15:54:17,501 INFO : 92% Done

11 May 2020 15:54:17,702 INFO : 93% Done

11 May 2020 15:54:17,867 DEBUG: Total peptides inserted: 3

11 May 2020 15:54:17,867 INFO : Inserting ERG8

11 May 2020 15:54:17,871 INFO : 94% Done

11 May 2020 15:54:18,042 INFO : 95% Done

11 May 2020 15:54:18,198 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:18,198 INFO : Inserting SMAD4

11 May 2020 15:54:18,203 INFO : 96% Done

11 May 2020 15:54:18,389 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:18,389 INFO : Inserting STAT3

11 May 2020 15:54:18,394 INFO : 97% Done

11 May 2020 15:54:18,633 INFO : 98% Done

11 May 2020 15:54:18,832 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:18,832 INFO : Done parsing Skyline document.

11 May 2020 15:54:18,834 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:54:18,970 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:54:19,777 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:54:20,050 INFO : Cleaning up temp tables

11 May 2020 15:54:20,346 INFO : Completed import of Skyline document from CPDR-FFPE-ID-8_seg2_2020-01-28_10-00-10.sky.zip

11 May 2020 15:54:20,348 INFO : 100% Done

11 May 2020 15:54:20,356 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80079/CPDR-FFPE-ID-8_seg2_2020-01-28_10-00-10.sky.zip into the system

11 May 2020 15:54:20,356 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80078/CPDR-FFPE-ID-2_seg2_2020-01-28_09-59-31/CPDR-FFPE-ID-2_seg2.skyd into the system

11 May 2020 15:54:20,358 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80078/CPDR-FFPE-ID-2_seg2_2020-01-28_09-59-31/CPDR-FFPE-ID-2_seg2.skyd into the system

11 May 2020 15:54:20,358 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80078/CPDR-FFPE-ID-2_seg2_2020-01-28_09-59-31.sky.zip into the system

11 May 2020 15:54:20,361 INFO : Starting import from CPDR-FFPE-ID-2_seg2_2020-01-28_09-59-31.sky.zip

11 May 2020 15:54:20,365 INFO : Starting to import Skyline document from CPDR-FFPE-ID-2_seg2_2020-01-28_09-59-31.sky.zip

11 May 2020 15:54:20,374 INFO : Expanding CPDR-FFPE-ID-2_seg2.skyd

11 May 2020 15:54:20,729 INFO : Expanding CPDR-FFPE-ID-2_seg2.sky.view

11 May 2020 15:54:20,730 INFO : Expanding CPDR-FFPE-ID-2_seg2.sky

11 May 2020 15:54:20,783 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 15:54:20,787 INFO : 1% Done

11 May 2020 15:54:21,346 INFO : Inserting TFF3

11 May 2020 15:54:21,354 INFO : 2% Done

11 May 2020 15:54:21,522 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:21,522 INFO : Inserting AKT1

11 May 2020 15:54:21,527 INFO : 3% Done

11 May 2020 15:54:21,754 INFO : 4% Done

11 May 2020 15:54:21,992 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:21,993 INFO : Inserting AMACR

11 May 2020 15:54:21,998 INFO : 5% Done

11 May 2020 15:54:22,239 INFO : 6% Done

11 May 2020 15:54:22,471 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:22,471 INFO : Inserting ANDR

11 May 2020 15:54:22,476 INFO : 7% Done

11 May 2020 15:54:22,713 INFO : 9% Done

11 May 2020 15:54:22,911 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:22,911 INFO : Inserting ANXA2

11 May 2020 15:54:22,916 INFO : 10% Done

11 May 2020 15:54:23,140 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:23,140 INFO : Inserting AURKA

11 May 2020 15:54:23,145 INFO : 11% Done

11 May 2020 15:54:23,337 INFO : 12% Done

11 May 2020 15:54:23,536 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:23,536 INFO : Inserting BRAF

11 May 2020 15:54:23,540 INFO : 13% Done

11 May 2020 15:54:23,725 INFO : 14% Done

11 May 2020 15:54:23,914 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:23,914 INFO : Inserting CAMKK2

11 May 2020 15:54:23,919 INFO : 15% Done

11 May 2020 15:54:24,133 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:24,133 INFO : Inserting CCND1

11 May 2020 15:54:24,138 INFO : 16% Done

11 May 2020 15:54:24,305 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:24,305 INFO : Inserting CDN1A

11 May 2020 15:54:24,310 INFO : 17% Done

11 May 2020 15:54:24,494 INFO : 18% Done

11 May 2020 15:54:24,692 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:24,692 INFO : Inserting CRISP3

11 May 2020 15:54:24,697 INFO : 19% Done

11 May 2020 15:54:24,906 INFO : 20% Done

11 May 2020 15:54:25,092 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:25,092 INFO : Inserting DCOR

11 May 2020 15:54:25,095 INFO : 21% Done

11 May 2020 15:54:25,289 INFO : 22% Done

11 May 2020 15:54:25,444 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:25,444 INFO : Inserting EGFR

11 May 2020 15:54:25,447 INFO : 23% Done

11 May 2020 15:54:25,639 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:25,639 INFO : Inserting EZH2

11 May 2020 15:54:25,644 INFO : 24% Done

11 May 2020 15:54:25,851 INFO : 25% Done

11 May 2020 15:54:26,018 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:26,018 INFO : Inserting FGFR1

11 May 2020 15:54:26,170 INFO : 26% Done

11 May 2020 15:54:26,328 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:26,328 INFO : Inserting FOLH1

11 May 2020 15:54:26,330 INFO : 27% Done

11 May 2020 15:54:26,510 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:26,511 INFO : Inserting HIF1A

11 May 2020 15:54:26,513 INFO : 28% Done

11 May 2020 15:54:26,718 INFO : 29% Done

11 May 2020 15:54:26,905 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:26,905 INFO : Inserting HPN

11 May 2020 15:54:26,909 INFO : 30% Done

11 May 2020 15:54:27,117 INFO : 31% Done

11 May 2020 15:54:27,308 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:27,308 INFO : 32% Done

11 May 2020 15:54:27,308 INFO : Inserting HSPB1

11 May 2020 15:54:27,313 INFO : 33% Done

11 May 2020 15:54:27,533 INFO : 34% Done

11 May 2020 15:54:27,753 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:27,754 INFO : Inserting HXC6

11 May 2020 15:54:27,758 INFO : 35% Done

11 May 2020 15:54:27,956 INFO : 36% Done

11 May 2020 15:54:28,134 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:28,134 INFO : Inserting KLK11

11 May 2020 15:54:28,138 INFO : 37% Done

11 May 2020 15:54:28,408 INFO : 38% Done

11 May 2020 15:54:28,620 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:28,620 INFO : Inserting KLK2

11 May 2020 15:54:28,625 INFO : 39% Done

11 May 2020 15:54:28,827 INFO : 40% Done

11 May 2020 15:54:29,006 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:29,006 INFO : Inserting MMP2

11 May 2020 15:54:29,011 INFO : 41% Done

11 May 2020 15:54:29,219 INFO : 43% Done

11 May 2020 15:54:29,447 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:29,447 INFO : Inserting MMP9

11 May 2020 15:54:29,452 INFO : 44% Done

11 May 2020 15:54:29,655 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:29,655 INFO : Inserting MUC1

11 May 2020 15:54:29,660 INFO : 45% Done

11 May 2020 15:54:29,848 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:29,848 INFO : Inserting MUC6

11 May 2020 15:54:29,852 INFO : 46% Done

11 May 2020 15:54:30,030 INFO : 47% Done

11 May 2020 15:54:30,233 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:30,233 INFO : Inserting MYC

11 May 2020 15:54:30,237 INFO : 48% Done

11 May 2020 15:54:30,415 INFO : 49% Done

11 May 2020 15:54:30,592 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:30,593 INFO : Inserting MYCN

11 May 2020 15:54:30,597 INFO : 50% Done

11 May 2020 15:54:30,799 INFO : 51% Done

11 May 2020 15:54:31,000 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:31,000 INFO : Inserting MYO6

11 May 2020 15:54:31,005 INFO : 52% Done

11 May 2020 15:54:31,252 INFO : 53% Done

11 May 2020 15:54:31,463 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:31,463 INFO : Inserting NCOA2

11 May 2020 15:54:31,468 INFO : 54% Done

11 May 2020 15:54:31,694 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:31,695 INFO : Inserting NPY

11 May 2020 15:54:31,699 INFO : 55% Done

11 May 2020 15:54:31,909 INFO : 56% Done

11 May 2020 15:54:32,129 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:32,129 INFO : Inserting O51E2

11 May 2020 15:54:32,134 INFO : 57% Done

11 May 2020 15:54:32,344 INFO : 58% Done

11 May 2020 15:54:32,554 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:32,554 INFO : Inserting OSTP

11 May 2020 15:54:32,559 INFO : 59% Done

11 May 2020 15:54:32,752 INFO : 60% Done

11 May 2020 15:54:32,948 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:32,948 INFO : Inserting P53

11 May 2020 15:54:32,953 INFO : 61% Done

11 May 2020 15:54:33,156 INFO : 62% Done

11 May 2020 15:54:33,365 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:33,366 INFO : Inserting PAFA

11 May 2020 15:54:33,370 INFO : 63% Done

11 May 2020 15:54:33,581 INFO : 64% Done

11 May 2020 15:54:33,772 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:33,772 INFO : Inserting PGFRB

11 May 2020 15:54:33,777 INFO : 65% Done

11 May 2020 15:54:33,993 INFO : 66% Done

11 May 2020 15:54:34,204 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:34,204 INFO : Inserting PK3CA

11 May 2020 15:54:34,209 INFO : 67% Done

11 May 2020 15:54:34,441 INFO : 68% Done

11 May 2020 15:54:34,645 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:34,645 INFO : Inserting RAF1

11 May 2020 15:54:34,650 INFO : 69% Done

11 May 2020 15:54:34,858 INFO : 71% Done

11 May 2020 15:54:35,094 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:35,094 INFO : Inserting SERPINI1

11 May 2020 15:54:35,099 INFO : 72% Done

11 May 2020 15:54:35,327 INFO : 73% Done

11 May 2020 15:54:35,526 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:35,527 INFO : Inserting SPINK1

11 May 2020 15:54:35,531 INFO : 74% Done

11 May 2020 15:54:35,717 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:35,718 INFO : Inserting SPRC

11 May 2020 15:54:35,934 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:35,934 INFO : Inserting TGFB1

11 May 2020 15:54:35,939 INFO : 75% Done

11 May 2020 15:54:36,163 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:36,163 INFO : Inserting TMPS2

11 May 2020 15:54:36,168 INFO : 76% Done

11 May 2020 15:54:36,423 INFO : 77% Done

11 May 2020 15:54:36,665 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:36,665 INFO : Inserting TPM2

11 May 2020 15:54:36,670 INFO : 78% Done

11 May 2020 15:54:36,881 INFO : 79% Done

11 May 2020 15:54:37,143 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:37,143 INFO : Inserting TWST1

11 May 2020 15:54:37,148 INFO : 80% Done

11 May 2020 15:54:37,368 INFO : 81% Done

11 May 2020 15:54:37,579 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:37,579 INFO : Inserting VEGFA

11 May 2020 15:54:37,584 INFO : 82% Done

11 May 2020 15:54:37,800 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:37,800 INFO : Inserting PSA

11 May 2020 15:54:37,805 INFO : 84% Done

11 May 2020 15:54:38,056 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:38,056 INFO : Inserting ERG_pan

11 May 2020 15:54:38,061 INFO : 85% Done

11 May 2020 15:54:38,259 INFO : 86% Done

11 May 2020 15:54:38,457 INFO : 87% Done

11 May 2020 15:54:38,656 INFO : 88% Done

11 May 2020 15:54:38,873 INFO : 89% Done

11 May 2020 15:54:39,077 INFO : 90% Done

11 May 2020 15:54:39,285 DEBUG: Total peptides inserted: 6

11 May 2020 15:54:39,285 INFO : Inserting ETV1

11 May 2020 15:54:39,290 INFO : 91% Done

11 May 2020 15:54:39,551 INFO : 92% Done

11 May 2020 15:54:39,790 INFO : 93% Done

11 May 2020 15:54:40,009 DEBUG: Total peptides inserted: 3

11 May 2020 15:54:40,010 INFO : Inserting ERG8

11 May 2020 15:54:40,014 INFO : 94% Done

11 May 2020 15:54:40,224 INFO : 95% Done

11 May 2020 15:54:40,440 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:40,440 INFO : Inserting SMAD4

11 May 2020 15:54:40,444 INFO : 96% Done

11 May 2020 15:54:40,680 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:40,680 INFO : Inserting STAT3

11 May 2020 15:54:40,686 INFO : 97% Done

11 May 2020 15:54:40,921 INFO : 98% Done

11 May 2020 15:54:41,124 DEBUG: Total peptides inserted: 2

11 May 2020 15:54:41,124 INFO : Done parsing Skyline document.

11 May 2020 15:54:41,127 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:54:41,260 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:54:42,061 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:54:42,217 INFO : Cleaning up temp tables

11 May 2020 15:54:42,542 INFO : Completed import of Skyline document from CPDR-FFPE-ID-2_seg2_2020-01-28_09-59-31.sky.zip

11 May 2020 15:54:42,544 INFO : 100% Done

11 May 2020 15:54:42,557 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80078/CPDR-FFPE-ID-2_seg2_2020-01-28_09-59-31.sky.zip into the system

11 May 2020 15:54:42,557 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80074/CPDR-FFPE-ID-620_seg1_2020-01-28_09-58-12/CPDR-FFPE-ID-620_seg1.skyd into the system

11 May 2020 15:54:42,559 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80074/CPDR-FFPE-ID-620_seg1_2020-01-28_09-58-12/CPDR-FFPE-ID-620_seg1.skyd into the system

11 May 2020 15:54:42,559 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80074/CPDR-FFPE-ID-620_seg1_2020-01-28_09-58-12.sky.zip into the system

11 May 2020 15:54:42,564 INFO : Starting import from CPDR-FFPE-ID-620_seg1_2020-01-28_09-58-12.sky.zip

11 May 2020 15:54:42,572 INFO : Starting to import Skyline document from CPDR-FFPE-ID-620_seg1_2020-01-28_09-58-12.sky.zip

11 May 2020 15:54:42,597 INFO : Expanding CPDR-FFPE-ID-620_seg1.skyd

11 May 2020 15:54:43,267 INFO : Expanding CPDR-FFPE-ID-620_seg1.sky.view

11 May 2020 15:54:43,268 INFO : Expanding CPDR-FFPE-ID-620_seg1.sky

11 May 2020 15:54:43,280 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 15:54:43,283 INFO : 3% Done

11 May 2020 15:54:43,805 INFO : Inserting ANXA2

11 May 2020 15:54:43,809 INFO : 10% Done

11 May 2020 15:54:43,891 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:43,891 INFO : Inserting CAMKK2

11 May 2020 15:54:43,893 INFO : 17% Done

11 May 2020 15:54:43,967 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:43,968 INFO : Inserting CCND1

11 May 2020 15:54:43,969 INFO : 23% Done

11 May 2020 15:54:44,076 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:44,076 INFO : Inserting EGFR

11 May 2020 15:54:44,080 INFO : 27% Done

11 May 2020 15:54:44,243 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:44,244 INFO : Inserting ERG_pan

11 May 2020 15:54:44,249 INFO : 35% Done

11 May 2020 15:54:44,474 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:44,474 INFO : Inserting FOLH1

11 May 2020 15:54:44,478 INFO : 41% Done

11 May 2020 15:54:44,671 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:44,671 INFO : Inserting MMP9

11 May 2020 15:54:44,677 INFO : 48% Done

11 May 2020 15:54:44,903 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:44,903 INFO : Inserting MUC1

11 May 2020 15:54:44,907 INFO : 54% Done

11 May 2020 15:54:45,082 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:45,082 INFO : Inserting NCOA2

11 May 2020 15:54:45,087 INFO : 58% Done

11 May 2020 15:54:45,232 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:45,232 INFO : Inserting PSA

11 May 2020 15:54:45,237 INFO : 64% Done

11 May 2020 15:54:45,430 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:45,431 INFO : Inserting SMAD4

11 May 2020 15:54:45,435 INFO : 69% Done

11 May 2020 15:54:45,580 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:45,580 INFO : Inserting SPINK1

11 May 2020 15:54:45,585 INFO : 74% Done

11 May 2020 15:54:45,775 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:45,776 INFO : Inserting SPRC

11 May 2020 15:54:45,780 INFO : 79% Done

11 May 2020 15:54:45,949 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:45,950 INFO : Inserting TFF3

11 May 2020 15:54:45,955 INFO : 86% Done

11 May 2020 15:54:46,190 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:46,190 INFO : Inserting TGFB1

11 May 2020 15:54:46,195 INFO : 91% Done

11 May 2020 15:54:46,342 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:46,342 INFO : Inserting VEGFA

11 May 2020 15:54:46,348 INFO : 98% Done

11 May 2020 15:54:46,615 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:46,616 INFO : Done parsing Skyline document.

11 May 2020 15:54:46,618 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:54:46,660 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:54:46,839 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:54:46,905 INFO : Cleaning up temp tables

11 May 2020 15:54:46,916 INFO : Completed import of Skyline document from CPDR-FFPE-ID-620_seg1_2020-01-28_09-58-12.sky.zip

11 May 2020 15:54:46,918 INFO : 100% Done

11 May 2020 15:54:46,930 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80074/CPDR-FFPE-ID-620_seg1_2020-01-28_09-58-12.sky.zip into the system

11 May 2020 15:54:46,930 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80072/CPDR-FFPE-ID-362_seg1_2020-01-28_09-57-31/CPDR-FFPE-ID-362_seg1.skyd into the system

11 May 2020 15:54:46,932 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80072/CPDR-FFPE-ID-362_seg1_2020-01-28_09-57-31/CPDR-FFPE-ID-362_seg1.skyd into the system

11 May 2020 15:54:46,932 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80072/CPDR-FFPE-ID-362_seg1_2020-01-28_09-57-31.sky.zip into the system

11 May 2020 15:54:46,937 INFO : Starting import from CPDR-FFPE-ID-362_seg1_2020-01-28_09-57-31.sky.zip

11 May 2020 15:54:46,944 INFO : Starting to import Skyline document from CPDR-FFPE-ID-362_seg1_2020-01-28_09-57-31.sky.zip

11 May 2020 15:54:46,966 INFO : Expanding CPDR-FFPE-ID-362_seg1.skyd

11 May 2020 15:54:47,551 INFO : Expanding CPDR-FFPE-ID-362_seg1.sky.view

11 May 2020 15:54:47,552 INFO : Expanding CPDR-FFPE-ID-362_seg1.sky

11 May 2020 15:54:47,558 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 15:54:47,559 INFO : 3% Done

11 May 2020 15:54:47,849 INFO : Inserting ANXA2

11 May 2020 15:54:47,853 INFO : 11% Done

11 May 2020 15:54:47,931 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:47,931 INFO : Inserting CAMKK2

11 May 2020 15:54:47,933 INFO : 17% Done

11 May 2020 15:54:48,011 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:48,011 INFO : Inserting CCND1

11 May 2020 15:54:48,013 INFO : 23% Done

11 May 2020 15:54:48,167 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:48,167 INFO : Inserting EGFR

11 May 2020 15:54:48,172 INFO : 28% Done

11 May 2020 15:54:48,332 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:48,332 INFO : Inserting ERG_pan

11 May 2020 15:54:48,337 INFO : 36% Done

11 May 2020 15:54:48,546 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:48,547 INFO : Inserting FOLH1

11 May 2020 15:54:48,551 INFO : 42% Done

11 May 2020 15:54:48,740 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:48,740 INFO : Inserting MMP9

11 May 2020 15:54:48,745 INFO : 49% Done

11 May 2020 15:54:48,953 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:48,953 INFO : Inserting MUC1

11 May 2020 15:54:48,957 INFO : 54% Done

11 May 2020 15:54:49,103 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:49,104 INFO : Inserting NCOA2

11 May 2020 15:54:49,108 INFO : 59% Done

11 May 2020 15:54:49,239 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:49,239 INFO : Inserting PSA

11 May 2020 15:54:49,244 INFO : 66% Done

11 May 2020 15:54:49,456 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:49,456 INFO : Inserting SMAD4

11 May 2020 15:54:49,460 INFO : 70% Done

11 May 2020 15:54:49,590 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:49,591 INFO : Inserting SPINK1

11 May 2020 15:54:49,595 INFO : 75% Done

11 May 2020 15:54:49,759 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:49,759 INFO : Inserting SPRC

11 May 2020 15:54:49,763 INFO : 80% Done

11 May 2020 15:54:49,904 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:49,904 INFO : Inserting TFF3

11 May 2020 15:54:49,909 INFO : 87% Done

11 May 2020 15:54:50,116 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:50,116 INFO : Inserting TGFB1

11 May 2020 15:54:50,120 INFO : 92% Done

11 May 2020 15:54:50,263 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:50,263 INFO : Inserting VEGFA

11 May 2020 15:54:50,268 INFO : 98% Done

11 May 2020 15:54:50,464 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:50,464 INFO : Done parsing Skyline document.

11 May 2020 15:54:50,466 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:54:50,507 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:54:50,674 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:54:50,736 INFO : Cleaning up temp tables

11 May 2020 15:54:50,747 INFO : Completed import of Skyline document from CPDR-FFPE-ID-362_seg1_2020-01-28_09-57-31.sky.zip

11 May 2020 15:54:50,748 INFO : 100% Done

11 May 2020 15:54:50,759 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80072/CPDR-FFPE-ID-362_seg1_2020-01-28_09-57-31.sky.zip into the system

11 May 2020 15:54:50,759 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80066/CPDR-FFPE-ID-141_seg1_2020-01-28_09-55-17/CPDR-FFPE-ID-141_seg1.skyd into the system

11 May 2020 15:54:50,760 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80066/CPDR-FFPE-ID-141_seg1_2020-01-28_09-55-17/CPDR-FFPE-ID-141_seg1.skyd into the system

11 May 2020 15:54:50,761 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80066/CPDR-FFPE-ID-141_seg1_2020-01-28_09-55-17.sky.zip into the system

11 May 2020 15:54:50,765 INFO : Starting import from CPDR-FFPE-ID-141_seg1_2020-01-28_09-55-17.sky.zip

11 May 2020 15:54:50,772 INFO : Starting to import Skyline document from CPDR-FFPE-ID-141_seg1_2020-01-28_09-55-17.sky.zip

11 May 2020 15:54:50,794 INFO : Expanding CPDR-FFPE-ID-141_seg1.skyd

11 May 2020 15:54:51,513 INFO : Expanding CPDR-FFPE-ID-141_seg1.sky.view

11 May 2020 15:54:51,514 INFO : Expanding CPDR-FFPE-ID-141_seg1.sky

11 May 2020 15:54:51,526 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 15:54:51,528 INFO : 3% Done

11 May 2020 15:54:51,789 INFO : Inserting ANXA2

11 May 2020 15:54:51,794 INFO : 10% Done

11 May 2020 15:54:51,870 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:51,870 INFO : Inserting CAMKK2

11 May 2020 15:54:51,872 INFO : 15% Done

11 May 2020 15:54:51,940 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:51,940 INFO : Inserting CCND1

11 May 2020 15:54:51,942 INFO : 21% Done

11 May 2020 15:54:52,008 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:52,008 INFO : Inserting EGFR

11 May 2020 15:54:52,010 INFO : 25% Done

11 May 2020 15:54:52,167 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:52,168 INFO : 26% Done

11 May 2020 15:54:52,168 INFO : Inserting ERG_pan

11 May 2020 15:54:52,173 INFO : 33% Done

11 May 2020 15:54:52,417 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:52,417 INFO : Inserting FOLH1

11 May 2020 15:54:52,422 INFO : 40% Done

11 May 2020 15:54:52,732 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:52,732 INFO : Inserting MMP9

11 May 2020 15:54:52,738 INFO : 48% Done

11 May 2020 15:54:52,975 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:52,975 INFO : Inserting MUC1

11 May 2020 15:54:52,981 INFO : 54% Done

11 May 2020 15:54:53,200 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:53,200 INFO : Inserting NCOA2

11 May 2020 15:54:53,204 INFO : 59% Done

11 May 2020 15:54:53,366 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:53,366 INFO : Inserting PSA

11 May 2020 15:54:53,370 INFO : 65% Done

11 May 2020 15:54:53,559 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:53,559 INFO : Inserting SMAD4

11 May 2020 15:54:53,564 INFO : 70% Done

11 May 2020 15:54:53,710 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:53,711 INFO : Inserting SPINK1

11 May 2020 15:54:53,716 INFO : 74% Done

11 May 2020 15:54:53,903 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:53,903 INFO : Inserting SPRC

11 May 2020 15:54:53,908 INFO : 79% Done

11 May 2020 15:54:54,074 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:54,074 INFO : Inserting TFF3

11 May 2020 15:54:54,080 INFO : 87% Done

11 May 2020 15:54:54,370 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:54,370 INFO : Inserting TGFB1

11 May 2020 15:54:54,374 INFO : 91% Done

11 May 2020 15:54:54,536 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:54,537 INFO : Inserting VEGFA

11 May 2020 15:54:54,542 INFO : 98% Done

11 May 2020 15:54:54,791 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:54,791 INFO : Done parsing Skyline document.

11 May 2020 15:54:54,793 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:54:54,836 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:54:55,019 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:54:55,082 INFO : Cleaning up temp tables

11 May 2020 15:54:55,570 INFO : Completed import of Skyline document from CPDR-FFPE-ID-141_seg1_2020-01-28_09-55-17.sky.zip

11 May 2020 15:54:55,572 INFO : 100% Done

11 May 2020 15:54:55,583 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80066/CPDR-FFPE-ID-141_seg1_2020-01-28_09-55-17.sky.zip into the system

11 May 2020 15:54:55,584 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80063/CPDR-FFPE-ID-90_seg1_2020-01-28_09-54-09/CPDR-FFPE-ID-90_seg1.skyd into the system

11 May 2020 15:54:55,585 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80063/CPDR-FFPE-ID-90_seg1_2020-01-28_09-54-09/CPDR-FFPE-ID-90_seg1.skyd into the system

11 May 2020 15:54:55,585 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80063/CPDR-FFPE-ID-90_seg1_2020-01-28_09-54-09.sky.zip into the system

11 May 2020 15:54:55,590 INFO : Starting import from CPDR-FFPE-ID-90_seg1_2020-01-28_09-54-09.sky.zip

11 May 2020 15:54:55,596 INFO : Starting to import Skyline document from CPDR-FFPE-ID-90_seg1_2020-01-28_09-54-09.sky.zip

11 May 2020 15:54:55,616 INFO : Expanding CPDR-FFPE-ID-90_seg1.skyd

11 May 2020 15:54:56,248 INFO : Expanding CPDR-FFPE-ID-90_seg1.sky.view

11 May 2020 15:54:56,249 INFO : Expanding CPDR-FFPE-ID-90_seg1.sky

11 May 2020 15:54:56,261 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 15:54:56,264 INFO : 3% Done

11 May 2020 15:54:56,712 INFO : Inserting ANXA2

11 May 2020 15:54:56,716 INFO : 10% Done

11 May 2020 15:54:56,799 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:56,799 INFO : Inserting CAMKK2

11 May 2020 15:54:56,801 INFO : 16% Done

11 May 2020 15:54:56,892 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:56,892 INFO : Inserting CCND1

11 May 2020 15:54:56,894 INFO : 22% Done

11 May 2020 15:54:56,972 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:56,972 INFO : Inserting EGFR

11 May 2020 15:54:56,974 INFO : 27% Done

11 May 2020 15:54:57,088 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:57,088 INFO : Inserting ERG_pan

11 May 2020 15:54:57,094 INFO : 34% Done

11 May 2020 15:54:57,349 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:57,349 INFO : Inserting FOLH1

11 May 2020 15:54:57,354 INFO : 41% Done

11 May 2020 15:54:57,586 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:57,586 INFO : Inserting MMP9

11 May 2020 15:54:57,592 INFO : 48% Done

11 May 2020 15:54:57,832 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:57,832 INFO : Inserting MUC1

11 May 2020 15:54:57,837 INFO : 55% Done

11 May 2020 15:54:58,053 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:58,053 INFO : Inserting NCOA2

11 May 2020 15:54:58,057 INFO : 59% Done

11 May 2020 15:54:58,198 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:58,198 INFO : Inserting PSA

11 May 2020 15:54:58,203 INFO : 66% Done

11 May 2020 15:54:58,435 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:58,435 INFO : Inserting SMAD4

11 May 2020 15:54:58,440 INFO : 71% Done

11 May 2020 15:54:58,599 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:58,599 INFO : Inserting SPINK1

11 May 2020 15:54:58,604 INFO : 75% Done

11 May 2020 15:54:58,790 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:58,790 INFO : Inserting SPRC

11 May 2020 15:54:58,794 INFO : 80% Done

11 May 2020 15:54:58,963 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:58,964 INFO : Inserting TFF3

11 May 2020 15:54:58,968 INFO : 86% Done

11 May 2020 15:54:59,210 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:59,210 INFO : Inserting TGFB1

11 May 2020 15:54:59,214 INFO : 91% Done

11 May 2020 15:54:59,368 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:59,369 INFO : Inserting VEGFA

11 May 2020 15:54:59,374 INFO : 98% Done

11 May 2020 15:54:59,621 DEBUG: Total peptides inserted: 1

11 May 2020 15:54:59,621 INFO : Done parsing Skyline document.

11 May 2020 15:54:59,623 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:54:59,713 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:54:59,884 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:54:59,946 INFO : Cleaning up temp tables

11 May 2020 15:55:00,442 INFO : Completed import of Skyline document from CPDR-FFPE-ID-90_seg1_2020-01-28_09-54-09.sky.zip

11 May 2020 15:55:00,444 INFO : 100% Done

11 May 2020 15:55:00,457 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80063/CPDR-FFPE-ID-90_seg1_2020-01-28_09-54-09.sky.zip into the system

11 May 2020 15:55:00,457 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80054/CPDR-FFPE-ID-56_seg1_2020-01-28_09-52-11/CPDR-FFPE-ID-56_seg1.skyd into the system

11 May 2020 15:55:00,459 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80054/CPDR-FFPE-ID-56_seg1_2020-01-28_09-52-11/CPDR-FFPE-ID-56_seg1.skyd into the system

11 May 2020 15:55:00,459 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80054/CPDR-FFPE-ID-56_seg1_2020-01-28_09-52-11.sky.zip into the system

11 May 2020 15:55:00,465 INFO : Starting import from CPDR-FFPE-ID-56_seg1_2020-01-28_09-52-11.sky.zip

11 May 2020 15:55:00,472 INFO : Starting to import Skyline document from CPDR-FFPE-ID-56_seg1_2020-01-28_09-52-11.sky.zip

11 May 2020 15:55:00,502 INFO : Expanding CPDR-FFPE-ID-56_seg1.skyd

11 May 2020 15:55:01,153 INFO : Expanding CPDR-FFPE-ID-56_seg1.sky.view

11 May 2020 15:55:01,153 INFO : Expanding CPDR-FFPE-ID-56_seg1.sky

11 May 2020 15:55:01,160 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 15:55:01,162 INFO : 3% Done

11 May 2020 15:55:01,761 INFO : Inserting ANXA2

11 May 2020 15:55:01,772 INFO : 10% Done

11 May 2020 15:55:02,000 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:02,001 INFO : Inserting CAMKK2

11 May 2020 15:55:02,006 INFO : 16% Done

11 May 2020 15:55:02,222 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:02,223 INFO : Inserting CCND1

11 May 2020 15:55:02,227 INFO : 22% Done

11 May 2020 15:55:02,446 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:02,446 INFO : Inserting EGFR

11 May 2020 15:55:02,451 INFO : 27% Done

11 May 2020 15:55:02,773 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:02,773 INFO : Inserting ERG_pan

11 May 2020 15:55:02,779 INFO : 34% Done

11 May 2020 15:55:03,040 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:03,041 INFO : Inserting FOLH1

11 May 2020 15:55:03,045 INFO : 40% Done

11 May 2020 15:55:03,309 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:03,309 INFO : Inserting MMP9

11 May 2020 15:55:03,316 INFO : 49% Done

11 May 2020 15:55:03,627 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:03,627 INFO : Inserting MUC1

11 May 2020 15:55:03,631 INFO : 53% Done

11 May 2020 15:55:03,800 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:03,800 INFO : Inserting NCOA2

11 May 2020 15:55:03,805 INFO : 58% Done

11 May 2020 15:55:03,973 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:03,973 INFO : Inserting PSA

11 May 2020 15:55:03,978 INFO : 64% Done

11 May 2020 15:55:04,202 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:04,202 INFO : Inserting SMAD4

11 May 2020 15:55:04,206 INFO : 68% Done

11 May 2020 15:55:04,366 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:04,366 INFO : Inserting SPINK1

11 May 2020 15:55:04,372 INFO : 74% Done

11 May 2020 15:55:04,616 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:04,616 INFO : Inserting SPRC

11 May 2020 15:55:04,621 INFO : 78% Done

11 May 2020 15:55:04,811 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:04,811 INFO : Inserting TFF3

11 May 2020 15:55:04,817 INFO : 86% Done

11 May 2020 15:55:05,116 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:05,116 INFO : Inserting TGFB1

11 May 2020 15:55:05,120 INFO : 90% Done

11 May 2020 15:55:05,328 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:05,328 INFO : Inserting VEGFA

11 May 2020 15:55:05,334 INFO : 98% Done

11 May 2020 15:55:05,609 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:05,609 INFO : Done parsing Skyline document.

11 May 2020 15:55:05,611 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:55:05,656 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:55:05,853 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:55:05,925 INFO : Cleaning up temp tables

11 May 2020 15:55:05,937 INFO : Completed import of Skyline document from CPDR-FFPE-ID-56_seg1_2020-01-28_09-52-11.sky.zip

11 May 2020 15:55:05,938 INFO : 100% Done

11 May 2020 15:55:05,950 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80054/CPDR-FFPE-ID-56_seg1_2020-01-28_09-52-11.sky.zip into the system

11 May 2020 15:55:05,950 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80089/CPDR-FFPE-ID-89_seg2_2020-01-28_10-05-24/CPDR-FFPE-ID-89_seg2.skyd into the system

11 May 2020 15:55:05,952 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80089/CPDR-FFPE-ID-89_seg2_2020-01-28_10-05-24/CPDR-FFPE-ID-89_seg2.skyd into the system

11 May 2020 15:55:05,952 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80089/CPDR-FFPE-ID-89_seg2_2020-01-28_10-05-24.sky.zip into the system

11 May 2020 15:55:05,956 INFO : Starting import from CPDR-FFPE-ID-89_seg2_2020-01-28_10-05-24.sky.zip

11 May 2020 15:55:05,964 INFO : Starting to import Skyline document from CPDR-FFPE-ID-89_seg2_2020-01-28_10-05-24.sky.zip

11 May 2020 15:55:05,980 INFO : Expanding CPDR-FFPE-ID-89_seg2.skyd

11 May 2020 15:55:06,528 INFO : Expanding CPDR-FFPE-ID-89_seg2.sky.view

11 May 2020 15:55:06,529 INFO : Expanding CPDR-FFPE-ID-89_seg2.sky

11 May 2020 15:55:06,550 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 15:55:06,551 INFO : 1% Done

11 May 2020 15:55:06,776 INFO : Inserting TFF3

11 May 2020 15:55:06,781 INFO : 2% Done

11 May 2020 15:55:06,902 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:06,902 INFO : Inserting AKT1

11 May 2020 15:55:06,904 INFO : 3% Done

11 May 2020 15:55:06,979 INFO : 4% Done

11 May 2020 15:55:07,127 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:07,127 INFO : Inserting AMACR

11 May 2020 15:55:07,132 INFO : 5% Done

11 May 2020 15:55:07,346 INFO : 6% Done

11 May 2020 15:55:07,548 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:07,548 INFO : Inserting ANDR

11 May 2020 15:55:07,553 INFO : 7% Done

11 May 2020 15:55:07,754 INFO : 8% Done

11 May 2020 15:55:07,934 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:07,935 INFO : Inserting ANXA2

11 May 2020 15:55:07,940 INFO : 10% Done

11 May 2020 15:55:08,141 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:08,142 INFO : Inserting AURKA

11 May 2020 15:55:08,146 INFO : 11% Done

11 May 2020 15:55:08,332 INFO : 12% Done

11 May 2020 15:55:08,514 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:08,514 INFO : Inserting BRAF

11 May 2020 15:55:08,519 INFO : 13% Done

11 May 2020 15:55:08,601 INFO : 14% Done

11 May 2020 15:55:08,687 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:08,688 INFO : Inserting CAMKK2

11 May 2020 15:55:08,690 INFO : 15% Done

11 May 2020 15:55:08,785 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:08,785 INFO : Inserting CCND1

11 May 2020 15:55:08,788 INFO : 16% Done

11 May 2020 15:55:08,865 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:08,865 INFO : Inserting CDN1A

11 May 2020 15:55:08,867 INFO : 17% Done

11 May 2020 15:55:08,952 INFO : 18% Done

11 May 2020 15:55:09,044 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:09,044 INFO : Inserting CRISP3

11 May 2020 15:55:09,046 INFO : 19% Done

11 May 2020 15:55:09,137 INFO : 20% Done

11 May 2020 15:55:09,227 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:09,228 INFO : Inserting DCOR

11 May 2020 15:55:09,230 INFO : 21% Done

11 May 2020 15:55:09,316 INFO : 22% Done

11 May 2020 15:55:09,398 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:09,398 INFO : Inserting EGFR

11 May 2020 15:55:09,400 INFO : 23% Done

11 May 2020 15:55:09,484 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:09,484 INFO : Inserting EZH2

11 May 2020 15:55:09,487 INFO : 24% Done

11 May 2020 15:55:09,571 INFO : 25% Done

11 May 2020 15:55:09,645 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:09,645 INFO : Inserting FGFR1

11 May 2020 15:55:09,738 INFO : 26% Done

11 May 2020 15:55:09,820 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:09,820 INFO : Inserting FOLH1

11 May 2020 15:55:09,822 INFO : 27% Done

11 May 2020 15:55:09,917 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:09,917 INFO : Inserting HIF1A

11 May 2020 15:55:09,919 INFO : 28% Done

11 May 2020 15:55:10,003 INFO : 29% Done

11 May 2020 15:55:10,105 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:10,105 INFO : Inserting HPN

11 May 2020 15:55:10,107 INFO : 30% Done

11 May 2020 15:55:10,192 INFO : 32% Done

11 May 2020 15:55:10,286 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:10,286 INFO : Inserting HSPB1

11 May 2020 15:55:10,288 INFO : 33% Done

11 May 2020 15:55:10,391 INFO : 34% Done

11 May 2020 15:55:10,492 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:10,492 INFO : Inserting HXC6

11 May 2020 15:55:10,495 INFO : 35% Done

11 May 2020 15:55:10,591 INFO : 36% Done

11 May 2020 15:55:10,690 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:10,690 INFO : Inserting KLK11

11 May 2020 15:55:10,692 INFO : 37% Done

11 May 2020 15:55:10,785 INFO : 38% Done

11 May 2020 15:55:10,860 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:10,860 INFO : Inserting KLK2

11 May 2020 15:55:10,862 INFO : 40% Done

11 May 2020 15:55:10,945 INFO : 41% Done

11 May 2020 15:55:11,019 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:11,019 INFO : Inserting MMP2

11 May 2020 15:55:11,021 INFO : 42% Done

11 May 2020 15:55:11,098 INFO : 43% Done

11 May 2020 15:55:11,176 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:11,176 INFO : Inserting MMP9

11 May 2020 15:55:11,178 INFO : 44% Done

11 May 2020 15:55:11,258 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:11,258 INFO : Inserting MUC1

11 May 2020 15:55:11,260 INFO : 45% Done

11 May 2020 15:55:11,337 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:11,337 INFO : Inserting MUC6

11 May 2020 15:55:11,339 INFO : 46% Done

11 May 2020 15:55:11,412 INFO : 47% Done

11 May 2020 15:55:11,483 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:11,484 INFO : Inserting MYC

11 May 2020 15:55:11,486 INFO : 48% Done

11 May 2020 15:55:11,557 INFO : 49% Done

11 May 2020 15:55:11,623 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:11,623 INFO : Inserting MYCN

11 May 2020 15:55:11,625 INFO : 50% Done

11 May 2020 15:55:11,700 INFO : 51% Done

11 May 2020 15:55:11,775 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:11,775 INFO : Inserting MYO6

11 May 2020 15:55:11,778 INFO : 52% Done

11 May 2020 15:55:11,868 INFO : 53% Done

11 May 2020 15:55:11,939 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:11,939 INFO : Inserting NCOA2

11 May 2020 15:55:11,941 INFO : 54% Done

11 May 2020 15:55:12,014 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:12,014 INFO : Inserting NPY

11 May 2020 15:55:12,016 INFO : 55% Done

11 May 2020 15:55:12,085 INFO : 56% Done

11 May 2020 15:55:12,161 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:12,161 INFO : Inserting O51E2

11 May 2020 15:55:12,163 INFO : 57% Done

11 May 2020 15:55:12,229 INFO : 58% Done

11 May 2020 15:55:12,300 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:12,300 INFO : Inserting OSTP

11 May 2020 15:55:12,301 INFO : 59% Done

11 May 2020 15:55:12,372 INFO : 60% Done

11 May 2020 15:55:12,440 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:12,441 INFO : Inserting P53

11 May 2020 15:55:12,442 INFO : 61% Done

11 May 2020 15:55:12,505 INFO : 62% Done

11 May 2020 15:55:12,576 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:12,576 INFO : Inserting PAFA

11 May 2020 15:55:12,578 INFO : 63% Done

11 May 2020 15:55:12,655 INFO : 64% Done

11 May 2020 15:55:12,728 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:12,728 INFO : Inserting PGFRB

11 May 2020 15:55:12,730 INFO : 65% Done

11 May 2020 15:55:12,801 INFO : 66% Done

11 May 2020 15:55:12,883 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:12,883 INFO : Inserting PK3CA

11 May 2020 15:55:12,885 INFO : 67% Done

11 May 2020 15:55:12,965 INFO : 68% Done

11 May 2020 15:55:13,039 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:13,039 INFO : Inserting RAF1

11 May 2020 15:55:13,041 INFO : 69% Done

11 May 2020 15:55:13,119 INFO : 71% Done

11 May 2020 15:55:13,203 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:13,203 INFO : Inserting SERPINI1

11 May 2020 15:55:13,205 INFO : 72% Done

11 May 2020 15:55:13,288 INFO : 73% Done

11 May 2020 15:55:13,367 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:13,367 INFO : Inserting SPINK1

11 May 2020 15:55:13,369 INFO : 74% Done

11 May 2020 15:55:13,449 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:13,450 INFO : Inserting SPRC

11 May 2020 15:55:13,520 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:13,520 INFO : Inserting TGFB1

11 May 2020 15:55:13,523 INFO : 75% Done

11 May 2020 15:55:13,608 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:13,608 INFO : Inserting TMPS2

11 May 2020 15:55:13,610 INFO : 76% Done

11 May 2020 15:55:13,705 INFO : 77% Done

11 May 2020 15:55:13,799 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:13,799 INFO : Inserting TPM2

11 May 2020 15:55:13,801 INFO : 78% Done

11 May 2020 15:55:13,909 INFO : 79% Done

11 May 2020 15:55:14,017 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:14,018 INFO : Inserting TWST1

11 May 2020 15:55:14,020 INFO : 80% Done

11 May 2020 15:55:14,192 INFO : 81% Done

11 May 2020 15:55:14,359 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:14,360 INFO : Inserting VEGFA

11 May 2020 15:55:14,364 INFO : 82% Done

11 May 2020 15:55:14,536 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:14,536 INFO : Inserting PSA

11 May 2020 15:55:14,544 INFO : 84% Done

11 May 2020 15:55:14,762 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:14,763 INFO : Inserting ERG_pan

11 May 2020 15:55:14,767 INFO : 85% Done

11 May 2020 15:55:14,946 INFO : 86% Done

11 May 2020 15:55:15,136 INFO : 87% Done

11 May 2020 15:55:15,468 INFO : 89% Done

11 May 2020 15:55:15,650 INFO : 90% Done

11 May 2020 15:55:15,856 DEBUG: Total peptides inserted: 6

11 May 2020 15:55:15,856 INFO : Inserting ETV1

11 May 2020 15:55:15,861 INFO : 91% Done

11 May 2020 15:55:16,057 INFO : 92% Done

11 May 2020 15:55:16,228 INFO : 93% Done

11 May 2020 15:55:16,411 DEBUG: Total peptides inserted: 3

11 May 2020 15:55:16,411 INFO : Inserting ERG8

11 May 2020 15:55:16,416 INFO : 94% Done

11 May 2020 15:55:16,603 INFO : 95% Done

11 May 2020 15:55:16,826 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:16,826 INFO : Inserting SMAD4

11 May 2020 15:55:16,831 INFO : 96% Done

11 May 2020 15:55:17,022 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:17,022 INFO : Inserting STAT3

11 May 2020 15:55:17,027 INFO : 97% Done

11 May 2020 15:55:17,227 INFO : 98% Done

11 May 2020 15:55:17,450 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:17,451 INFO : Done parsing Skyline document.

11 May 2020 15:55:17,453 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:55:17,651 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:55:18,494 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:55:18,661 INFO : Cleaning up temp tables

11 May 2020 15:55:18,976 INFO : Completed import of Skyline document from CPDR-FFPE-ID-89_seg2_2020-01-28_10-05-24.sky.zip

11 May 2020 15:55:18,977 INFO : 100% Done

11 May 2020 15:55:18,984 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80089/CPDR-FFPE-ID-89_seg2_2020-01-28_10-05-24.sky.zip into the system

11 May 2020 15:55:18,984 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80085/CPDR-FFPE-ID-57_seg2_2020-01-28_10-03-33/CPDR-FFPE-ID-57_seg2.skyd into the system

11 May 2020 15:55:18,985 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80085/CPDR-FFPE-ID-57_seg2_2020-01-28_10-03-33/CPDR-FFPE-ID-57_seg2.skyd into the system

11 May 2020 15:55:18,985 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80085/CPDR-FFPE-ID-57_seg2_2020-01-28_10-03-33.sky.zip into the system

11 May 2020 15:55:18,987 INFO : Starting import from CPDR-FFPE-ID-57_seg2_2020-01-28_10-03-33.sky.zip

11 May 2020 15:55:18,990 INFO : Starting to import Skyline document from CPDR-FFPE-ID-57_seg2_2020-01-28_10-03-33.sky.zip

11 May 2020 15:55:18,998 INFO : Expanding CPDR-FFPE-ID-57_seg2.skyd

11 May 2020 15:55:19,497 INFO : Expanding CPDR-FFPE-ID-57_seg2.sky.view

11 May 2020 15:55:19,498 INFO : Expanding CPDR-FFPE-ID-57_seg2.sky

11 May 2020 15:55:19,534 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 15:55:19,535 INFO : 1% Done

11 May 2020 15:55:19,769 INFO : Inserting TFF3

11 May 2020 15:55:19,773 INFO : 2% Done

11 May 2020 15:55:19,839 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:19,839 INFO : Inserting AKT1

11 May 2020 15:55:19,841 INFO : 3% Done

11 May 2020 15:55:19,925 INFO : 4% Done

11 May 2020 15:55:20,006 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:20,006 INFO : Inserting AMACR

11 May 2020 15:55:20,008 INFO : 5% Done

11 May 2020 15:55:20,184 INFO : 6% Done

11 May 2020 15:55:20,355 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:20,355 INFO : Inserting ANDR

11 May 2020 15:55:20,359 INFO : 7% Done

11 May 2020 15:55:20,551 INFO : 8% Done

11 May 2020 15:55:20,753 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:20,753 INFO : Inserting ANXA2

11 May 2020 15:55:20,758 INFO : 9% Done

11 May 2020 15:55:20,973 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:20,973 INFO : Inserting AURKA

11 May 2020 15:55:20,978 INFO : 10% Done

11 May 2020 15:55:21,180 INFO : 12% Done

11 May 2020 15:55:21,392 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:21,392 INFO : Inserting BRAF

11 May 2020 15:55:21,396 INFO : 13% Done

11 May 2020 15:55:21,580 INFO : 14% Done

11 May 2020 15:55:21,779 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:21,779 INFO : Inserting CAMKK2

11 May 2020 15:55:21,784 INFO : 15% Done

11 May 2020 15:55:22,020 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:22,020 INFO : Inserting CCND1

11 May 2020 15:55:22,025 INFO : 16% Done

11 May 2020 15:55:22,249 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:22,249 INFO : Inserting CDN1A

11 May 2020 15:55:22,254 INFO : 17% Done

11 May 2020 15:55:22,431 INFO : 18% Done

11 May 2020 15:55:22,608 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:22,608 INFO : Inserting CRISP3

11 May 2020 15:55:22,612 INFO : 19% Done

11 May 2020 15:55:22,816 INFO : 20% Done

11 May 2020 15:55:23,003 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:23,004 INFO : Inserting DCOR

11 May 2020 15:55:23,008 INFO : 21% Done

11 May 2020 15:55:23,202 INFO : 22% Done

11 May 2020 15:55:23,402 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:23,402 INFO : Inserting EGFR

11 May 2020 15:55:23,407 INFO : 23% Done

11 May 2020 15:55:23,599 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:23,600 INFO : Inserting EZH2

11 May 2020 15:55:23,604 INFO : 24% Done

11 May 2020 15:55:23,792 INFO : 25% Done

11 May 2020 15:55:23,981 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:23,981 INFO : Inserting FGFR1

11 May 2020 15:55:24,197 INFO : 26% Done

11 May 2020 15:55:24,387 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:24,388 INFO : Inserting FOLH1

11 May 2020 15:55:24,392 INFO : 27% Done

11 May 2020 15:55:24,607 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:24,607 INFO : Inserting HIF1A

11 May 2020 15:55:24,611 INFO : 28% Done

11 May 2020 15:55:24,807 INFO : 29% Done

11 May 2020 15:55:25,007 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:25,007 INFO : Inserting HPN

11 May 2020 15:55:25,011 INFO : 30% Done

11 May 2020 15:55:25,224 INFO : 32% Done

11 May 2020 15:55:25,424 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:25,424 INFO : Inserting HSPB1

11 May 2020 15:55:25,429 INFO : 33% Done

11 May 2020 15:55:25,670 INFO : 34% Done

11 May 2020 15:55:25,907 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:25,907 INFO : Inserting HXC6

11 May 2020 15:55:25,912 INFO : 35% Done

11 May 2020 15:55:26,108 INFO : 36% Done

11 May 2020 15:55:26,283 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:26,283 INFO : Inserting KLK11

11 May 2020 15:55:26,288 INFO : 37% Done

11 May 2020 15:55:26,527 INFO : 38% Done

11 May 2020 15:55:26,700 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:26,700 INFO : Inserting KLK2

11 May 2020 15:55:26,705 INFO : 39% Done

11 May 2020 15:55:26,900 INFO : 40% Done

11 May 2020 15:55:27,079 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:27,079 INFO : Inserting MMP2

11 May 2020 15:55:27,083 INFO : 42% Done

11 May 2020 15:55:27,264 INFO : 43% Done

11 May 2020 15:55:27,447 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:27,447 INFO : Inserting MMP9

11 May 2020 15:55:27,452 INFO : 44% Done

11 May 2020 15:55:27,665 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:27,665 INFO : Inserting MUC1

11 May 2020 15:55:27,669 INFO : 45% Done

11 May 2020 15:55:27,835 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:27,836 INFO : Inserting MUC6

11 May 2020 15:55:27,840 INFO : 46% Done

11 May 2020 15:55:28,016 INFO : 47% Done

11 May 2020 15:55:28,190 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:28,190 INFO : Inserting MYC

11 May 2020 15:55:28,195 INFO : 48% Done

11 May 2020 15:55:28,349 INFO : 49% Done

11 May 2020 15:55:28,503 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:28,504 INFO : Inserting MYCN

11 May 2020 15:55:28,508 INFO : 50% Done

11 May 2020 15:55:28,698 INFO : 51% Done

11 May 2020 15:55:28,876 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:28,876 INFO : Inserting MYO6

11 May 2020 15:55:28,881 INFO : 52% Done

11 May 2020 15:55:29,070 INFO : 53% Done

11 May 2020 15:55:29,262 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:29,262 INFO : Inserting NCOA2

11 May 2020 15:55:29,267 INFO : 54% Done

11 May 2020 15:55:29,454 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:29,454 INFO : Inserting NPY

11 May 2020 15:55:29,458 INFO : 55% Done

11 May 2020 15:55:29,624 INFO : 56% Done

11 May 2020 15:55:29,808 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:29,809 INFO : Inserting O51E2

11 May 2020 15:55:29,813 INFO : 57% Done

11 May 2020 15:55:29,986 INFO : 58% Done

11 May 2020 15:55:30,081 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:30,082 INFO : Inserting OSTP

11 May 2020 15:55:30,084 INFO : 59% Done

11 May 2020 15:55:30,150 INFO : 60% Done

11 May 2020 15:55:30,215 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:30,215 INFO : Inserting P53

11 May 2020 15:55:30,217 INFO : 61% Done

11 May 2020 15:55:30,292 INFO : 62% Done

11 May 2020 15:55:30,359 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:30,359 INFO : Inserting PAFA

11 May 2020 15:55:30,361 INFO : 63% Done

11 May 2020 15:55:30,434 INFO : 64% Done

11 May 2020 15:55:30,500 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:30,500 INFO : Inserting PGFRB

11 May 2020 15:55:30,502 INFO : 65% Done

11 May 2020 15:55:30,569 INFO : 66% Done

11 May 2020 15:55:30,649 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:30,649 INFO : Inserting PK3CA

11 May 2020 15:55:30,651 INFO : 67% Done

11 May 2020 15:55:30,730 INFO : 68% Done

11 May 2020 15:55:30,805 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:30,805 INFO : Inserting RAF1

11 May 2020 15:55:30,807 INFO : 69% Done

11 May 2020 15:55:30,888 INFO : 71% Done

11 May 2020 15:55:30,968 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:30,968 INFO : Inserting SERPINI1

11 May 2020 15:55:30,970 INFO : 72% Done

11 May 2020 15:55:31,050 INFO : 73% Done

11 May 2020 15:55:31,136 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:31,137 INFO : Inserting SPINK1

11 May 2020 15:55:31,138 INFO : 74% Done

11 May 2020 15:55:31,210 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:31,210 INFO : Inserting SPRC

11 May 2020 15:55:31,277 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:31,277 INFO : Inserting TGFB1

11 May 2020 15:55:31,279 INFO : 75% Done

11 May 2020 15:55:31,353 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:31,353 INFO : Inserting TMPS2

11 May 2020 15:55:31,355 INFO : 76% Done

11 May 2020 15:55:31,442 INFO : 77% Done

11 May 2020 15:55:31,530 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:31,530 INFO : Inserting TPM2

11 May 2020 15:55:31,532 INFO : 78% Done

11 May 2020 15:55:31,611 INFO : 79% Done

11 May 2020 15:55:31,704 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:31,704 INFO : Inserting TWST1

11 May 2020 15:55:31,706 INFO : 80% Done

11 May 2020 15:55:31,781 INFO : 81% Done

11 May 2020 15:55:31,852 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:31,852 INFO : Inserting VEGFA

11 May 2020 15:55:31,854 INFO : 82% Done

11 May 2020 15:55:31,948 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:31,948 INFO : Inserting PSA

11 May 2020 15:55:31,950 INFO : 84% Done

11 May 2020 15:55:32,042 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:32,042 INFO : Inserting ERG_pan

11 May 2020 15:55:32,044 INFO : 85% Done

11 May 2020 15:55:32,121 INFO : 86% Done

11 May 2020 15:55:32,261 INFO : 87% Done

11 May 2020 15:55:32,346 INFO : 89% Done

11 May 2020 15:55:32,434 INFO : 90% Done

11 May 2020 15:55:32,518 DEBUG: Total peptides inserted: 6

11 May 2020 15:55:32,518 INFO : Inserting ETV1

11 May 2020 15:55:32,520 INFO : 91% Done

11 May 2020 15:55:32,612 INFO : 92% Done

11 May 2020 15:55:32,703 INFO : 93% Done

11 May 2020 15:55:32,789 DEBUG: Total peptides inserted: 3

11 May 2020 15:55:32,789 INFO : Inserting ERG8

11 May 2020 15:55:32,791 INFO : 94% Done

11 May 2020 15:55:32,886 INFO : 95% Done

11 May 2020 15:55:32,972 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:32,972 INFO : Inserting SMAD4

11 May 2020 15:55:32,974 INFO : 96% Done

11 May 2020 15:55:33,052 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:33,052 INFO : Inserting STAT3

11 May 2020 15:55:33,055 INFO : 97% Done

11 May 2020 15:55:33,147 INFO : 98% Done

11 May 2020 15:55:33,233 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:33,233 INFO : Done parsing Skyline document.

11 May 2020 15:55:33,234 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:55:33,300 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:55:33,710 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:55:33,873 INFO : Cleaning up temp tables

11 May 2020 15:55:34,160 INFO : Completed import of Skyline document from CPDR-FFPE-ID-57_seg2_2020-01-28_10-03-33.sky.zip

11 May 2020 15:55:34,161 INFO : 100% Done

11 May 2020 15:55:34,167 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80085/CPDR-FFPE-ID-57_seg2_2020-01-28_10-03-33.sky.zip into the system

11 May 2020 15:55:34,167 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80084/CPDR-FFPE-ID-56_seg2_2020-01-28_10-02-55/CPDR-FFPE-ID-56_seg2.skyd into the system

11 May 2020 15:55:34,168 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80084/CPDR-FFPE-ID-56_seg2_2020-01-28_10-02-55/CPDR-FFPE-ID-56_seg2.skyd into the system

11 May 2020 15:55:34,168 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80084/CPDR-FFPE-ID-56_seg2_2020-01-28_10-02-55.sky.zip into the system

11 May 2020 15:55:34,171 INFO : Starting import from CPDR-FFPE-ID-56_seg2_2020-01-28_10-02-55.sky.zip

11 May 2020 15:55:34,174 INFO : Starting to import Skyline document from CPDR-FFPE-ID-56_seg2_2020-01-28_10-02-55.sky.zip

11 May 2020 15:55:34,183 INFO : Expanding CPDR-FFPE-ID-56_seg2.skyd

11 May 2020 15:55:34,423 INFO : Expanding CPDR-FFPE-ID-56_seg2.sky.view

11 May 2020 15:55:34,424 INFO : Expanding CPDR-FFPE-ID-56_seg2.sky

11 May 2020 15:55:34,444 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 15:55:34,446 INFO : 1% Done

11 May 2020 15:55:34,756 INFO : Inserting TFF3

11 May 2020 15:55:34,760 INFO : 2% Done

11 May 2020 15:55:34,841 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:34,841 INFO : Inserting AKT1

11 May 2020 15:55:34,843 INFO : 3% Done

11 May 2020 15:55:34,927 INFO : 4% Done

11 May 2020 15:55:35,033 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:35,033 INFO : Inserting AMACR

11 May 2020 15:55:35,038 INFO : 5% Done

11 May 2020 15:55:35,247 INFO : 6% Done

11 May 2020 15:55:35,444 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:35,444 INFO : Inserting ANDR

11 May 2020 15:55:35,448 INFO : 7% Done

11 May 2020 15:55:35,639 INFO : 8% Done

11 May 2020 15:55:35,818 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:35,819 INFO : Inserting ANXA2

11 May 2020 15:55:35,823 INFO : 10% Done

11 May 2020 15:55:36,030 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:36,031 INFO : Inserting AURKA

11 May 2020 15:55:36,035 INFO : 11% Done

11 May 2020 15:55:36,219 INFO : 12% Done

11 May 2020 15:55:36,395 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:36,395 INFO : Inserting BRAF

11 May 2020 15:55:36,399 INFO : 13% Done

11 May 2020 15:55:36,571 INFO : 14% Done

11 May 2020 15:55:36,753 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:36,753 INFO : Inserting CAMKK2

11 May 2020 15:55:36,758 INFO : 15% Done

11 May 2020 15:55:36,954 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:36,954 INFO : Inserting CCND1

11 May 2020 15:55:36,958 INFO : 16% Done

11 May 2020 15:55:37,177 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:37,177 INFO : Inserting CDN1A

11 May 2020 15:55:37,182 INFO : 17% Done

11 May 2020 15:55:37,359 INFO : 18% Done

11 May 2020 15:55:37,552 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:37,552 INFO : Inserting CRISP3

11 May 2020 15:55:37,557 INFO : 19% Done

11 May 2020 15:55:37,737 INFO : 20% Done

11 May 2020 15:55:37,915 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:37,915 INFO : Inserting DCOR

11 May 2020 15:55:37,919 INFO : 21% Done

11 May 2020 15:55:38,082 INFO : 22% Done

11 May 2020 15:55:38,238 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:38,238 INFO : Inserting EGFR

11 May 2020 15:55:38,243 INFO : 23% Done

11 May 2020 15:55:38,437 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:38,437 INFO : Inserting EZH2

11 May 2020 15:55:38,441 INFO : 24% Done

11 May 2020 15:55:38,626 INFO : 25% Done

11 May 2020 15:55:38,853 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:38,853 INFO : Inserting FGFR1

11 May 2020 15:55:39,034 INFO : 26% Done

11 May 2020 15:55:39,198 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:39,199 INFO : Inserting FOLH1

11 May 2020 15:55:39,203 INFO : 27% Done

11 May 2020 15:55:39,386 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:39,386 INFO : Inserting HIF1A

11 May 2020 15:55:39,390 INFO : 28% Done

11 May 2020 15:55:39,585 INFO : 29% Done

11 May 2020 15:55:39,769 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:39,769 INFO : Inserting HPN

11 May 2020 15:55:39,773 INFO : 30% Done

11 May 2020 15:55:39,954 INFO : 31% Done

11 May 2020 15:55:40,129 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:40,130 INFO : Inserting HSPB1

11 May 2020 15:55:40,134 INFO : 33% Done

11 May 2020 15:55:40,336 INFO : 34% Done

11 May 2020 15:55:40,539 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:40,539 INFO : Inserting HXC6

11 May 2020 15:55:40,543 INFO : 35% Done

11 May 2020 15:55:40,723 INFO : 36% Done

11 May 2020 15:55:40,894 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:40,894 INFO : Inserting KLK11

11 May 2020 15:55:40,899 INFO : 37% Done

11 May 2020 15:55:41,239 INFO : 38% Done

11 May 2020 15:55:41,449 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:41,449 INFO : Inserting KLK2

11 May 2020 15:55:41,454 INFO : 39% Done

11 May 2020 15:55:41,665 INFO : 40% Done

11 May 2020 15:55:41,868 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:41,868 INFO : Inserting MMP2

11 May 2020 15:55:41,873 INFO : 42% Done

11 May 2020 15:55:42,086 INFO : 43% Done

11 May 2020 15:55:42,305 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:42,305 INFO : Inserting MMP9

11 May 2020 15:55:42,310 INFO : 44% Done

11 May 2020 15:55:42,535 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:42,535 INFO : Inserting MUC1

11 May 2020 15:55:42,539 INFO : 45% Done

11 May 2020 15:55:42,726 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:42,727 INFO : Inserting MUC6

11 May 2020 15:55:42,731 INFO : 46% Done

11 May 2020 15:55:42,905 INFO : 47% Done

11 May 2020 15:55:43,100 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:43,100 INFO : Inserting MYC

11 May 2020 15:55:43,105 INFO : 48% Done

11 May 2020 15:55:43,282 INFO : 49% Done

11 May 2020 15:55:44,113 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:44,113 INFO : Inserting MYCN

11 May 2020 15:55:44,117 INFO : 50% Done

11 May 2020 15:55:44,263 INFO : 51% Done

11 May 2020 15:55:44,428 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:44,428 INFO : Inserting MYO6

11 May 2020 15:55:44,432 INFO : 52% Done

11 May 2020 15:55:44,630 INFO : 53% Done

11 May 2020 15:55:44,789 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:44,789 INFO : Inserting NCOA2

11 May 2020 15:55:44,793 INFO : 54% Done

11 May 2020 15:55:44,958 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:44,958 INFO : Inserting NPY

11 May 2020 15:55:44,962 INFO : 55% Done

11 May 2020 15:55:45,125 INFO : 56% Done

11 May 2020 15:55:45,298 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:45,298 INFO : Inserting O51E2

11 May 2020 15:55:45,302 INFO : 58% Done

11 May 2020 15:55:45,477 INFO : 59% Done

11 May 2020 15:55:45,629 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:45,629 INFO : Inserting OSTP

11 May 2020 15:55:45,633 INFO : 60% Done

11 May 2020 15:55:45,791 INFO : 61% Done

11 May 2020 15:55:45,944 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:45,945 INFO : Inserting P53

11 May 2020 15:55:46,102 INFO : 63% Done

11 May 2020 15:55:46,265 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:46,265 INFO : Inserting PAFA

11 May 2020 15:55:46,269 INFO : 64% Done

11 May 2020 15:55:46,568 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:46,568 INFO : Inserting PGFRB

11 May 2020 15:55:46,572 INFO : 65% Done

11 May 2020 15:55:46,731 INFO : 67% Done

11 May 2020 15:55:46,896 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:46,897 INFO : Inserting PK3CA

11 May 2020 15:55:46,901 INFO : 68% Done

11 May 2020 15:55:47,073 INFO : 69% Done

11 May 2020 15:55:47,222 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:47,222 INFO : Inserting RAF1

11 May 2020 15:55:47,226 INFO : 70% Done

11 May 2020 15:55:47,407 INFO : 71% Done

11 May 2020 15:55:47,583 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:47,583 INFO : Inserting SERPINI1

11 May 2020 15:55:47,588 INFO : 72% Done

11 May 2020 15:55:47,834 INFO : 73% Done

11 May 2020 15:55:48,005 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:48,005 INFO : Inserting SPINK1

11 May 2020 15:55:48,009 INFO : 74% Done

11 May 2020 15:55:48,184 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:48,184 INFO : Inserting SPRC

11 May 2020 15:55:48,360 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:48,361 INFO : Inserting TGFB1

11 May 2020 15:55:48,366 INFO : 75% Done

11 May 2020 15:55:48,548 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:48,549 INFO : Inserting TMPS2

11 May 2020 15:55:48,554 INFO : 76% Done

11 May 2020 15:55:48,756 INFO : 77% Done

11 May 2020 15:55:48,939 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:48,939 INFO : Inserting TPM2

11 May 2020 15:55:48,945 INFO : 78% Done

11 May 2020 15:55:49,145 INFO : 80% Done

11 May 2020 15:55:49,371 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:49,371 INFO : Inserting TWST1

11 May 2020 15:55:49,376 INFO : 81% Done

11 May 2020 15:55:49,562 INFO : 82% Done

11 May 2020 15:55:49,735 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:49,735 INFO : Inserting VEGFA

11 May 2020 15:55:49,904 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:49,904 INFO : Inserting PSA

11 May 2020 15:55:49,910 INFO : 84% Done

11 May 2020 15:55:50,145 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:50,145 INFO : Inserting ERG_pan

11 May 2020 15:55:50,150 INFO : 85% Done

11 May 2020 15:55:50,331 INFO : 86% Done

11 May 2020 15:55:50,502 INFO : 87% Done

11 May 2020 15:55:50,673 INFO : 88% Done

11 May 2020 15:55:50,856 INFO : 89% Done

11 May 2020 15:55:51,044 INFO : 90% Done

11 May 2020 15:55:51,197 DEBUG: Total peptides inserted: 6

11 May 2020 15:55:51,198 INFO : Inserting ETV1

11 May 2020 15:55:51,202 INFO : 91% Done

11 May 2020 15:55:51,382 INFO : 92% Done

11 May 2020 15:55:51,567 INFO : 93% Done

11 May 2020 15:55:51,766 DEBUG: Total peptides inserted: 3

11 May 2020 15:55:51,767 INFO : Inserting ERG8

11 May 2020 15:55:51,771 INFO : 94% Done

11 May 2020 15:55:51,973 INFO : 95% Done

11 May 2020 15:55:52,169 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:52,169 INFO : Inserting SMAD4

11 May 2020 15:55:52,174 INFO : 96% Done

11 May 2020 15:55:52,400 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:52,401 INFO : Inserting STAT3

11 May 2020 15:55:52,406 INFO : 97% Done

11 May 2020 15:55:52,635 INFO : 98% Done

11 May 2020 15:55:52,801 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:52,802 INFO : Done parsing Skyline document.

11 May 2020 15:55:52,804 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:55:52,935 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:55:53,892 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:55:54,123 INFO : Cleaning up temp tables

11 May 2020 15:55:54,404 INFO : Completed import of Skyline document from CPDR-FFPE-ID-56_seg2_2020-01-28_10-02-55.sky.zip

11 May 2020 15:55:54,405 INFO : 100% Done

11 May 2020 15:55:54,410 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80084/CPDR-FFPE-ID-56_seg2_2020-01-28_10-02-55.sky.zip into the system

11 May 2020 15:55:54,410 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80080/CPDR-FFPE-ID-9_seg2_2020-01-28_10-00-45/CPDR-FFPE-ID-9_seg2.skyd into the system

11 May 2020 15:55:54,411 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80080/CPDR-FFPE-ID-9_seg2_2020-01-28_10-00-45/CPDR-FFPE-ID-9_seg2.skyd into the system

11 May 2020 15:55:54,411 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80080/CPDR-FFPE-ID-9_seg2_2020-01-28_10-00-45.sky.zip into the system

11 May 2020 15:55:54,414 INFO : Starting import from CPDR-FFPE-ID-9_seg2_2020-01-28_10-00-45.sky.zip

11 May 2020 15:55:54,417 INFO : Starting to import Skyline document from CPDR-FFPE-ID-9_seg2_2020-01-28_10-00-45.sky.zip

11 May 2020 15:55:54,425 INFO : Expanding CPDR-FFPE-ID-9_seg2.skyd

11 May 2020 15:55:54,870 INFO : Expanding CPDR-FFPE-ID-9_seg2.sky.view

11 May 2020 15:55:54,871 INFO : Expanding CPDR-FFPE-ID-9_seg2.sky

11 May 2020 15:55:54,920 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 15:55:54,924 INFO : 1% Done

11 May 2020 15:55:55,448 INFO : Inserting TFF3

11 May 2020 15:55:55,452 INFO : 2% Done

11 May 2020 15:55:55,533 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:55,534 INFO : Inserting AKT1

11 May 2020 15:55:55,538 INFO : 3% Done

11 May 2020 15:55:55,715 INFO : 4% Done

11 May 2020 15:55:55,936 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:55,937 INFO : Inserting AMACR

11 May 2020 15:55:55,942 INFO : 5% Done

11 May 2020 15:55:56,155 INFO : 6% Done

11 May 2020 15:55:56,363 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:56,364 INFO : Inserting ANDR

11 May 2020 15:55:56,368 INFO : 8% Done

11 May 2020 15:55:56,558 INFO : 9% Done

11 May 2020 15:55:56,725 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:56,725 INFO : Inserting ANXA2

11 May 2020 15:55:56,730 INFO : 10% Done

11 May 2020 15:55:56,983 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:56,983 INFO : Inserting AURKA

11 May 2020 15:55:56,987 INFO : 11% Done

11 May 2020 15:55:57,205 INFO : 12% Done

11 May 2020 15:55:57,384 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:57,384 INFO : Inserting BRAF

11 May 2020 15:55:57,388 INFO : 13% Done

11 May 2020 15:55:57,551 INFO : 14% Done

11 May 2020 15:55:57,725 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:57,725 INFO : Inserting CAMKK2

11 May 2020 15:55:57,729 INFO : 15% Done

11 May 2020 15:55:57,921 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:57,921 INFO : Inserting CCND1

11 May 2020 15:55:57,926 INFO : 16% Done

11 May 2020 15:55:58,088 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:58,088 INFO : Inserting CDN1A

11 May 2020 15:55:58,093 INFO : 17% Done

11 May 2020 15:55:58,250 INFO : 18% Done

11 May 2020 15:55:58,437 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:58,437 INFO : Inserting CRISP3

11 May 2020 15:55:58,442 INFO : 19% Done

11 May 2020 15:55:58,646 INFO : 20% Done

11 May 2020 15:55:58,829 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:58,829 INFO : Inserting DCOR

11 May 2020 15:55:58,833 INFO : 21% Done

11 May 2020 15:55:59,004 INFO : 22% Done

11 May 2020 15:55:59,171 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:59,171 INFO : Inserting EGFR

11 May 2020 15:55:59,175 INFO : 23% Done

11 May 2020 15:55:59,371 DEBUG: Total peptides inserted: 1

11 May 2020 15:55:59,371 INFO : Inserting EZH2

11 May 2020 15:55:59,375 INFO : 25% Done

11 May 2020 15:55:59,724 DEBUG: Total peptides inserted: 2

11 May 2020 15:55:59,724 INFO : Inserting FGFR1

11 May 2020 15:55:59,728 INFO : 26% Done

11 May 2020 15:56:00,147 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:00,147 INFO : 27% Done

11 May 2020 15:56:00,147 INFO : Inserting FOLH1

11 May 2020 15:56:00,152 INFO : 28% Done

11 May 2020 15:56:00,376 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:00,376 INFO : Inserting HIF1A

11 May 2020 15:56:00,381 INFO : 29% Done

11 May 2020 15:56:00,554 INFO : 30% Done

11 May 2020 15:56:00,752 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:00,752 INFO : Inserting HPN

11 May 2020 15:56:00,757 INFO : 31% Done

11 May 2020 15:56:00,974 INFO : 32% Done

11 May 2020 15:56:01,196 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:01,196 INFO : Inserting HSPB1

11 May 2020 15:56:01,201 INFO : 33% Done

11 May 2020 15:56:01,444 INFO : 34% Done

11 May 2020 15:56:01,694 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:01,695 INFO : Inserting HXC6

11 May 2020 15:56:01,699 INFO : 35% Done

11 May 2020 15:56:01,914 INFO : 37% Done

11 May 2020 15:56:02,112 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:02,112 INFO : Inserting KLK11

11 May 2020 15:56:02,117 INFO : 38% Done

11 May 2020 15:56:02,338 INFO : 39% Done

11 May 2020 15:56:02,512 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:02,512 INFO : Inserting KLK2

11 May 2020 15:56:02,517 INFO : 40% Done

11 May 2020 15:56:02,744 INFO : 41% Done

11 May 2020 15:56:02,940 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:02,941 INFO : Inserting MMP2

11 May 2020 15:56:02,945 INFO : 42% Done

11 May 2020 15:56:03,155 INFO : 43% Done

11 May 2020 15:56:03,356 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:03,356 INFO : Inserting MMP9

11 May 2020 15:56:03,361 INFO : 44% Done

11 May 2020 15:56:03,602 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:03,602 INFO : Inserting MUC1

11 May 2020 15:56:03,607 INFO : 45% Done

11 May 2020 15:56:03,870 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:03,870 INFO : Inserting MUC6

11 May 2020 15:56:03,875 INFO : 46% Done

11 May 2020 15:56:04,060 INFO : 47% Done

11 May 2020 15:56:04,248 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:04,248 INFO : Inserting MYC

11 May 2020 15:56:04,252 INFO : 48% Done

11 May 2020 15:56:04,429 INFO : 49% Done

11 May 2020 15:56:04,613 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:04,613 INFO : Inserting MYCN

11 May 2020 15:56:04,617 INFO : 50% Done

11 May 2020 15:56:04,825 INFO : 51% Done

11 May 2020 15:56:05,043 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:05,043 INFO : Inserting MYO6

11 May 2020 15:56:05,048 INFO : 52% Done

11 May 2020 15:56:05,280 INFO : 53% Done

11 May 2020 15:56:05,447 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:05,447 INFO : Inserting NCOA2

11 May 2020 15:56:05,451 INFO : 54% Done

11 May 2020 15:56:05,645 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:05,645 INFO : Inserting NPY

11 May 2020 15:56:05,650 INFO : 55% Done

11 May 2020 15:56:05,823 INFO : 56% Done

11 May 2020 15:56:06,032 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:06,032 INFO : Inserting O51E2

11 May 2020 15:56:06,036 INFO : 57% Done

11 May 2020 15:56:06,236 INFO : 58% Done

11 May 2020 15:56:06,447 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:06,448 INFO : Inserting OSTP

11 May 2020 15:56:06,452 INFO : 60% Done

11 May 2020 15:56:06,836 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:06,837 INFO : Inserting P53

11 May 2020 15:56:06,841 INFO : 61% Done

11 May 2020 15:56:07,025 INFO : 62% Done

11 May 2020 15:56:07,197 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:07,197 INFO : Inserting PAFA

11 May 2020 15:56:07,202 INFO : 63% Done

11 May 2020 15:56:07,393 INFO : 64% Done

11 May 2020 15:56:07,556 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:07,556 INFO : Inserting PGFRB

11 May 2020 15:56:07,605 INFO : 65% Done

11 May 2020 15:56:07,796 INFO : 66% Done

11 May 2020 15:56:07,971 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:07,971 INFO : Inserting PK3CA

11 May 2020 15:56:07,976 INFO : 68% Done

11 May 2020 15:56:08,176 INFO : 69% Done

11 May 2020 15:56:08,378 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:08,378 INFO : Inserting RAF1

11 May 2020 15:56:08,383 INFO : 70% Done

11 May 2020 15:56:08,607 INFO : 71% Done

11 May 2020 15:56:08,811 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:08,812 INFO : Inserting SERPINI1

11 May 2020 15:56:08,817 INFO : 72% Done

11 May 2020 15:56:09,037 INFO : 73% Done

11 May 2020 15:56:09,239 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:09,239 INFO : Inserting SPINK1

11 May 2020 15:56:09,244 INFO : 74% Done

11 May 2020 15:56:09,450 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:09,450 INFO : Inserting SPRC

11 May 2020 15:56:09,646 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:09,646 INFO : Inserting TGFB1

11 May 2020 15:56:09,651 INFO : 75% Done

11 May 2020 15:56:09,856 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:09,856 INFO : Inserting TMPS2

11 May 2020 15:56:09,860 INFO : 76% Done

11 May 2020 15:56:10,075 INFO : 77% Done

11 May 2020 15:56:10,293 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:10,294 INFO : Inserting TPM2

11 May 2020 15:56:10,298 INFO : 78% Done

11 May 2020 15:56:10,508 INFO : 79% Done

11 May 2020 15:56:10,745 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:10,746 INFO : Inserting TWST1

11 May 2020 15:56:10,750 INFO : 80% Done

11 May 2020 15:56:10,935 INFO : 81% Done

11 May 2020 15:56:11,115 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:11,115 INFO : Inserting VEGFA

11 May 2020 15:56:11,120 INFO : 82% Done

11 May 2020 15:56:11,295 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:11,295 INFO : Inserting PSA

11 May 2020 15:56:11,300 INFO : 84% Done

11 May 2020 15:56:11,557 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:11,557 INFO : Inserting ERG_pan

11 May 2020 15:56:11,561 INFO : 85% Done

11 May 2020 15:56:11,744 INFO : 86% Done

11 May 2020 15:56:11,934 INFO : 87% Done

11 May 2020 15:56:12,123 INFO : 88% Done

11 May 2020 15:56:12,509 INFO : 90% Done

11 May 2020 15:56:12,708 DEBUG: Total peptides inserted: 6

11 May 2020 15:56:12,708 INFO : Inserting ETV1

11 May 2020 15:56:12,713 INFO : 91% Done

11 May 2020 15:56:12,927 INFO : 92% Done

11 May 2020 15:56:13,128 INFO : 93% Done

11 May 2020 15:56:13,331 DEBUG: Total peptides inserted: 3

11 May 2020 15:56:13,332 INFO : Inserting ERG8

11 May 2020 15:56:13,336 INFO : 94% Done

11 May 2020 15:56:13,522 INFO : 95% Done

11 May 2020 15:56:13,716 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:13,717 INFO : Inserting SMAD4

11 May 2020 15:56:13,721 INFO : 96% Done

11 May 2020 15:56:13,936 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:13,937 INFO : Inserting STAT3

11 May 2020 15:56:13,942 INFO : 97% Done

11 May 2020 15:56:14,153 INFO : 98% Done

11 May 2020 15:56:14,343 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:14,344 INFO : Done parsing Skyline document.

11 May 2020 15:56:14,346 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:56:14,476 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:56:15,321 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:56:15,578 INFO : Cleaning up temp tables

11 May 2020 15:56:15,867 INFO : Completed import of Skyline document from CPDR-FFPE-ID-9_seg2_2020-01-28_10-00-45.sky.zip

11 May 2020 15:56:15,869 INFO : 100% Done

11 May 2020 15:56:15,878 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80080/CPDR-FFPE-ID-9_seg2_2020-01-28_10-00-45.sky.zip into the system

11 May 2020 15:56:15,878 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80073/CPDR-FFPE-ID-500_seg1_2020-01-28_09-57-46/CPDR-FFPE-ID-500_seg1.skyd into the system

11 May 2020 15:56:15,880 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80073/CPDR-FFPE-ID-500_seg1_2020-01-28_09-57-46/CPDR-FFPE-ID-500_seg1.skyd into the system

11 May 2020 15:56:15,880 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80073/CPDR-FFPE-ID-500_seg1_2020-01-28_09-57-46.sky.zip into the system

11 May 2020 15:56:15,884 INFO : Starting import from CPDR-FFPE-ID-500_seg1_2020-01-28_09-57-46.sky.zip

11 May 2020 15:56:15,890 INFO : Starting to import Skyline document from CPDR-FFPE-ID-500_seg1_2020-01-28_09-57-46.sky.zip

11 May 2020 15:56:15,921 INFO : Expanding CPDR-FFPE-ID-500_seg1.skyd

11 May 2020 15:56:16,636 INFO : Expanding CPDR-FFPE-ID-500_seg1.sky.view

11 May 2020 15:56:16,636 INFO : Expanding CPDR-FFPE-ID-500_seg1.sky

11 May 2020 15:56:16,644 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 15:56:16,646 INFO : 3% Done

11 May 2020 15:56:17,129 INFO : 5% Done

11 May 2020 15:56:17,129 INFO : Inserting ANXA2

11 May 2020 15:56:17,139 INFO : 9% Done

11 May 2020 15:56:17,338 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:17,339 INFO : Inserting CAMKK2

11 May 2020 15:56:17,343 INFO : 15% Done

11 May 2020 15:56:17,559 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:17,560 INFO : Inserting CCND1

11 May 2020 15:56:17,564 INFO : 20% Done

11 May 2020 15:56:17,750 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:17,750 INFO : Inserting EGFR

11 May 2020 15:56:17,755 INFO : 26% Done

11 May 2020 15:56:17,990 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:17,990 INFO : Inserting ERG_pan

11 May 2020 15:56:17,997 INFO : 34% Done

11 May 2020 15:56:18,284 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:18,284 INFO : Inserting FOLH1

11 May 2020 15:56:18,289 INFO : 39% Done

11 May 2020 15:56:18,499 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:18,499 INFO : Inserting MMP9

11 May 2020 15:56:18,506 INFO : 47% Done

11 May 2020 15:56:18,812 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:18,812 INFO : Inserting MUC1

11 May 2020 15:56:18,818 INFO : 53% Done

11 May 2020 15:56:19,053 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:19,053 INFO : Inserting NCOA2

11 May 2020 15:56:19,058 INFO : 58% Done

11 May 2020 15:56:19,222 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:19,222 INFO : Inserting PSA

11 May 2020 15:56:19,227 INFO : 63% Done

11 May 2020 15:56:19,442 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:19,442 INFO : 64% Done

11 May 2020 15:56:19,442 INFO : Inserting SMAD4

11 May 2020 15:56:19,446 INFO : 67% Done

11 May 2020 15:56:19,596 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:19,596 INFO : Inserting SPINK1

11 May 2020 15:56:19,602 INFO : 74% Done

11 May 2020 15:56:19,866 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:19,867 INFO : Inserting SPRC

11 May 2020 15:56:19,872 INFO : 78% Done

11 May 2020 15:56:20,046 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:20,046 INFO : Inserting TFF3

11 May 2020 15:56:20,052 INFO : 86% Done

11 May 2020 15:56:20,370 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:20,370 INFO : Inserting TGFB1

11 May 2020 15:56:20,375 INFO : 90% Done

11 May 2020 15:56:20,523 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:20,523 INFO : Inserting VEGFA

11 May 2020 15:56:20,530 INFO : 98% Done

11 May 2020 15:56:20,840 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:20,840 INFO : Done parsing Skyline document.

11 May 2020 15:56:20,842 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:56:20,888 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:56:21,093 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:56:21,164 INFO : Cleaning up temp tables

11 May 2020 15:56:21,168 INFO : Completed import of Skyline document from CPDR-FFPE-ID-500_seg1_2020-01-28_09-57-46.sky.zip

11 May 2020 15:56:21,177 INFO : 100% Done

11 May 2020 15:56:21,188 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80073/CPDR-FFPE-ID-500_seg1_2020-01-28_09-57-46.sky.zip into the system

11 May 2020 15:56:21,188 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80067/CPDR-FFPE-ID-152_seg1_2020-01-28_09-55-37/CPDR-FFPE-ID-152_seg1.skyd into the system

11 May 2020 15:56:21,190 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80067/CPDR-FFPE-ID-152_seg1_2020-01-28_09-55-37/CPDR-FFPE-ID-152_seg1.skyd into the system

11 May 2020 15:56:21,190 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80067/CPDR-FFPE-ID-152_seg1_2020-01-28_09-55-37.sky.zip into the system

11 May 2020 15:56:21,194 INFO : Starting import from CPDR-FFPE-ID-152_seg1_2020-01-28_09-55-37.sky.zip

11 May 2020 15:56:21,202 INFO : Starting to import Skyline document from CPDR-FFPE-ID-152_seg1_2020-01-28_09-55-37.sky.zip

11 May 2020 15:56:21,221 INFO : Expanding CPDR-FFPE-ID-152_seg1.skyd

11 May 2020 15:56:21,842 INFO : Expanding CPDR-FFPE-ID-152_seg1.sky.view

11 May 2020 15:56:21,843 INFO : Expanding CPDR-FFPE-ID-152_seg1.sky

11 May 2020 15:56:21,856 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 15:56:21,859 INFO : 3% Done

11 May 2020 15:56:22,298 INFO : Inserting ANXA2

11 May 2020 15:56:22,304 INFO : 10% Done

11 May 2020 15:56:22,488 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:22,489 INFO : Inserting CAMKK2

11 May 2020 15:56:22,491 INFO : 17% Done

11 May 2020 15:56:22,674 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:22,675 INFO : Inserting CCND1

11 May 2020 15:56:22,679 INFO : 23% Done

11 May 2020 15:56:22,867 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:22,867 INFO : Inserting EGFR

11 May 2020 15:56:22,871 INFO : 27% Done

11 May 2020 15:56:23,023 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:23,023 INFO : Inserting ERG_pan

11 May 2020 15:56:23,028 INFO : 34% Done

11 May 2020 15:56:23,210 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:23,210 INFO : Inserting FOLH1

11 May 2020 15:56:23,215 INFO : 41% Done

11 May 2020 15:56:23,425 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:23,425 INFO : Inserting MMP9

11 May 2020 15:56:23,430 INFO : 48% Done

11 May 2020 15:56:23,632 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:23,632 INFO : Inserting MUC1

11 May 2020 15:56:23,637 INFO : 54% Done

11 May 2020 15:56:23,808 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:23,808 INFO : Inserting NCOA2

11 May 2020 15:56:23,812 INFO : 58% Done

11 May 2020 15:56:23,947 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:23,947 INFO : Inserting PSA

11 May 2020 15:56:23,952 INFO : 65% Done

11 May 2020 15:56:24,097 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:24,097 INFO : Inserting SMAD4

11 May 2020 15:56:24,101 INFO : 70% Done

11 May 2020 15:56:24,186 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:24,186 INFO : Inserting SPINK1

11 May 2020 15:56:24,191 INFO : 75% Done

11 May 2020 15:56:24,277 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:24,278 INFO : Inserting SPRC

11 May 2020 15:56:24,281 INFO : 80% Done

11 May 2020 15:56:24,367 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:24,367 INFO : Inserting TFF3

11 May 2020 15:56:24,371 INFO : 87% Done

11 May 2020 15:56:24,485 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:24,485 INFO : Inserting TGFB1

11 May 2020 15:56:24,489 INFO : 91% Done

11 May 2020 15:56:24,602 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:24,602 INFO : Inserting VEGFA

11 May 2020 15:56:24,607 INFO : 98% Done

11 May 2020 15:56:24,824 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:24,824 INFO : Done parsing Skyline document.

11 May 2020 15:56:24,827 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:56:24,867 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:56:25,033 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:56:25,090 INFO : Cleaning up temp tables

11 May 2020 15:56:25,595 INFO : Completed import of Skyline document from CPDR-FFPE-ID-152_seg1_2020-01-28_09-55-37.sky.zip

11 May 2020 15:56:25,597 INFO : 100% Done

11 May 2020 15:56:25,610 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80067/CPDR-FFPE-ID-152_seg1_2020-01-28_09-55-37.sky.zip into the system

11 May 2020 15:56:25,610 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80064/CPDR-FFPE-ID-91_seg1_2020-01-28_09-54-36/CPDR-FFPE-ID-91_seg1.skyd into the system

11 May 2020 15:56:25,611 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80064/CPDR-FFPE-ID-91_seg1_2020-01-28_09-54-36/CPDR-FFPE-ID-91_seg1.skyd into the system

11 May 2020 15:56:25,611 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80064/CPDR-FFPE-ID-91_seg1_2020-01-28_09-54-36.sky.zip into the system

11 May 2020 15:56:25,616 INFO : Starting import from CPDR-FFPE-ID-91_seg1_2020-01-28_09-54-36.sky.zip

11 May 2020 15:56:25,624 INFO : Starting to import Skyline document from CPDR-FFPE-ID-91_seg1_2020-01-28_09-54-36.sky.zip

11 May 2020 15:56:25,641 INFO : Expanding CPDR-FFPE-ID-91_seg1.skyd

11 May 2020 15:56:26,178 INFO : Expanding CPDR-FFPE-ID-91_seg1.sky.view

11 May 2020 15:56:26,179 INFO : Expanding CPDR-FFPE-ID-91_seg1.sky

11 May 2020 15:56:26,191 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 15:56:26,194 INFO : 2% Done

11 May 2020 15:56:26,700 INFO : Inserting ANXA2

11 May 2020 15:56:26,706 INFO : 10% Done

11 May 2020 15:56:26,861 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:26,861 INFO : Inserting CAMKK2

11 May 2020 15:56:26,863 INFO : 16% Done

11 May 2020 15:56:27,035 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:27,035 INFO : Inserting CCND1

11 May 2020 15:56:27,040 INFO : 23% Done

11 May 2020 15:56:27,220 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:27,220 INFO : Inserting EGFR

11 May 2020 15:56:27,224 INFO : 27% Done

11 May 2020 15:56:27,399 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:27,400 INFO : Inserting ERG_pan

11 May 2020 15:56:27,404 INFO : 34% Done

11 May 2020 15:56:27,591 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:27,591 INFO : Inserting FOLH1

11 May 2020 15:56:27,596 INFO : 41% Done

11 May 2020 15:56:27,805 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:27,805 INFO : Inserting MMP9

11 May 2020 15:56:27,810 INFO : 48% Done

11 May 2020 15:56:27,998 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:27,998 INFO : Inserting MUC1

11 May 2020 15:56:28,003 INFO : 54% Done

11 May 2020 15:56:28,179 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:28,179 INFO : Inserting NCOA2

11 May 2020 15:56:28,183 INFO : 59% Done

11 May 2020 15:56:28,331 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:28,331 INFO : Inserting PSA

11 May 2020 15:56:28,336 INFO : 66% Done

11 May 2020 15:56:28,537 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:28,537 INFO : Inserting SMAD4

11 May 2020 15:56:28,541 INFO : 70% Done

11 May 2020 15:56:28,676 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:28,677 INFO : Inserting SPINK1

11 May 2020 15:56:28,680 INFO : 75% Done

11 May 2020 15:56:28,832 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:28,832 INFO : Inserting SPRC

11 May 2020 15:56:28,837 INFO : 80% Done

11 May 2020 15:56:28,981 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:28,981 INFO : Inserting TFF3

11 May 2020 15:56:28,986 INFO : 87% Done

11 May 2020 15:56:29,201 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:29,202 INFO : Inserting TGFB1

11 May 2020 15:56:29,206 INFO : 91% Done

11 May 2020 15:56:29,348 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:29,348 INFO : Inserting VEGFA

11 May 2020 15:56:29,353 INFO : 98% Done

11 May 2020 15:56:29,566 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:29,567 INFO : Done parsing Skyline document.

11 May 2020 15:56:29,569 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:56:29,609 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:56:29,769 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:56:29,829 INFO : Cleaning up temp tables

11 May 2020 15:56:30,310 INFO : Completed import of Skyline document from CPDR-FFPE-ID-91_seg1_2020-01-28_09-54-36.sky.zip

11 May 2020 15:56:30,312 INFO : 100% Done

11 May 2020 15:56:30,324 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80064/CPDR-FFPE-ID-91_seg1_2020-01-28_09-54-36.sky.zip into the system

11 May 2020 15:56:30,325 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80053/CPDR-FFPE-ID-16_seg1_2020-01-28_09-51-48/CPDR-FFPE-ID-16_seg1.skyd into the system

11 May 2020 15:56:30,326 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80053/CPDR-FFPE-ID-16_seg1_2020-01-28_09-51-48/CPDR-FFPE-ID-16_seg1.skyd into the system

11 May 2020 15:56:30,326 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80053/CPDR-FFPE-ID-16_seg1_2020-01-28_09-51-48.sky.zip into the system

11 May 2020 15:56:30,331 INFO : Starting import from CPDR-FFPE-ID-16_seg1_2020-01-28_09-51-48.sky.zip

11 May 2020 15:56:30,338 INFO : Starting to import Skyline document from CPDR-FFPE-ID-16_seg1_2020-01-28_09-51-48.sky.zip

11 May 2020 15:56:30,361 INFO : Expanding CPDR-FFPE-ID-16_seg1.skyd

11 May 2020 15:56:31,027 INFO : Expanding CPDR-FFPE-ID-16_seg1.sky.view

11 May 2020 15:56:31,027 INFO : Expanding CPDR-FFPE-ID-16_seg1.sky

11 May 2020 15:56:31,034 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 15:56:31,037 INFO : 3% Done

11 May 2020 15:56:31,431 INFO : Inserting ANXA2

11 May 2020 15:56:31,437 INFO : 10% Done

11 May 2020 15:56:31,640 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:31,640 INFO : Inserting CAMKK2

11 May 2020 15:56:31,644 INFO : 17% Done

11 May 2020 15:56:31,846 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:31,847 INFO : Inserting CCND1

11 May 2020 15:56:31,851 INFO : 22% Done

11 May 2020 15:56:32,032 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:32,032 INFO : Inserting EGFR

11 May 2020 15:56:32,037 INFO : 27% Done

11 May 2020 15:56:32,216 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:32,216 INFO : Inserting ERG_pan

11 May 2020 15:56:32,221 INFO : 35% Done

11 May 2020 15:56:32,456 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:32,456 INFO : Inserting FOLH1

11 May 2020 15:56:32,461 INFO : 41% Done

11 May 2020 15:56:32,665 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:32,665 INFO : Inserting MMP9

11 May 2020 15:56:32,670 INFO : 49% Done

11 May 2020 15:56:32,898 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:32,898 INFO : Inserting MUC1

11 May 2020 15:56:32,902 INFO : 54% Done

11 May 2020 15:56:33,094 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:33,094 INFO : Inserting NCOA2

11 May 2020 15:56:33,098 INFO : 59% Done

11 May 2020 15:56:33,244 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:33,244 INFO : Inserting PSA

11 May 2020 15:56:33,249 INFO : 66% Done

11 May 2020 15:56:33,449 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:33,449 INFO : Inserting SMAD4

11 May 2020 15:56:33,453 INFO : 70% Done

11 May 2020 15:56:33,597 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:33,597 INFO : Inserting SPINK1

11 May 2020 15:56:33,601 INFO : 75% Done

11 May 2020 15:56:33,773 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:33,773 INFO : Inserting SPRC

11 May 2020 15:56:33,778 INFO : 79% Done

11 May 2020 15:56:33,930 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:33,930 INFO : Inserting TFF3

11 May 2020 15:56:33,936 INFO : 87% Done

11 May 2020 15:56:34,165 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:34,165 INFO : Inserting TGFB1

11 May 2020 15:56:34,169 INFO : 91% Done

11 May 2020 15:56:34,372 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:34,372 INFO : Inserting VEGFA

11 May 2020 15:56:34,377 INFO : 98% Done

11 May 2020 15:56:34,658 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:34,659 INFO : Done parsing Skyline document.

11 May 2020 15:56:34,661 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:56:34,702 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:56:34,875 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:56:34,938 INFO : Cleaning up temp tables

11 May 2020 15:56:35,421 INFO : Completed import of Skyline document from CPDR-FFPE-ID-16_seg1_2020-01-28_09-51-48.sky.zip

11 May 2020 15:56:35,423 INFO : 100% Done

11 May 2020 15:56:35,435 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80053/CPDR-FFPE-ID-16_seg1_2020-01-28_09-51-48.sky.zip into the system

11 May 2020 15:56:35,435 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80051/CPDR-FFPE-ID-13_seg1_2020-01-28_09-51-10/CPDR-FFPE-ID-13_seg1.skyd into the system

11 May 2020 15:56:35,437 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80051/CPDR-FFPE-ID-13_seg1_2020-01-28_09-51-10/CPDR-FFPE-ID-13_seg1.skyd into the system

11 May 2020 15:56:35,437 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80051/CPDR-FFPE-ID-13_seg1_2020-01-28_09-51-10.sky.zip into the system

11 May 2020 15:56:35,442 INFO : Starting import from CPDR-FFPE-ID-13_seg1_2020-01-28_09-51-10.sky.zip

11 May 2020 15:56:35,450 INFO : Starting to import Skyline document from CPDR-FFPE-ID-13_seg1_2020-01-28_09-51-10.sky.zip

11 May 2020 15:56:35,466 INFO : Expanding CPDR-FFPE-ID-13_seg1.skyd

11 May 2020 15:56:36,005 INFO : Expanding CPDR-FFPE-ID-13_seg1.sky.view

11 May 2020 15:56:36,006 INFO : Expanding CPDR-FFPE-ID-13_seg1.sky

11 May 2020 15:56:36,019 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 15:56:36,022 INFO : 2% Done

11 May 2020 15:56:36,306 INFO : Inserting ANXA2

11 May 2020 15:56:36,310 INFO : 10% Done

11 May 2020 15:56:36,387 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:36,387 INFO : Inserting CAMKK2

11 May 2020 15:56:36,389 INFO : 17% Done

11 May 2020 15:56:36,462 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:36,462 INFO : Inserting CCND1

11 May 2020 15:56:36,464 INFO : 24% Done

11 May 2020 15:56:36,570 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:36,570 INFO : Inserting EGFR

11 May 2020 15:56:36,574 INFO : 28% Done

11 May 2020 15:56:36,716 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:36,716 INFO : Inserting ERG_pan

11 May 2020 15:56:36,721 INFO : 35% Done

11 May 2020 15:56:36,895 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:36,895 INFO : Inserting FOLH1

11 May 2020 15:56:36,900 INFO : 42% Done

11 May 2020 15:56:37,095 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:37,095 INFO : Inserting MMP9

11 May 2020 15:56:37,099 INFO : 48% Done

11 May 2020 15:56:37,259 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:37,260 INFO : Inserting MUC1

11 May 2020 15:56:37,264 INFO : 54% Done

11 May 2020 15:56:37,438 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:37,438 INFO : Inserting NCOA2

11 May 2020 15:56:37,442 INFO : 60% Done

11 May 2020 15:56:37,581 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:37,581 INFO : Inserting PSA

11 May 2020 15:56:37,586 INFO : 66% Done

11 May 2020 15:56:37,776 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:37,776 INFO : Inserting SMAD4

11 May 2020 15:56:37,780 INFO : 71% Done

11 May 2020 15:56:37,910 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:37,910 INFO : Inserting SPINK1

11 May 2020 15:56:37,914 INFO : 75% Done

11 May 2020 15:56:38,094 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:38,094 INFO : Inserting SPRC

11 May 2020 15:56:38,098 INFO : 80% Done

11 May 2020 15:56:38,244 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:38,244 INFO : Inserting TFF3

11 May 2020 15:56:38,248 INFO : 87% Done

11 May 2020 15:56:38,446 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:38,446 INFO : Inserting TGFB1

11 May 2020 15:56:38,450 INFO : 92% Done

11 May 2020 15:56:38,586 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:38,586 INFO : Inserting VEGFA

11 May 2020 15:56:38,591 INFO : 98% Done

11 May 2020 15:56:38,775 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:38,775 INFO : Done parsing Skyline document.

11 May 2020 15:56:38,777 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:56:38,817 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:56:38,973 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:56:39,031 INFO : Cleaning up temp tables

11 May 2020 15:56:39,042 INFO : Completed import of Skyline document from CPDR-FFPE-ID-13_seg1_2020-01-28_09-51-10.sky.zip

11 May 2020 15:56:39,043 INFO : 100% Done

11 May 2020 15:56:39,054 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80051/CPDR-FFPE-ID-13_seg1_2020-01-28_09-51-10.sky.zip into the system

11 May 2020 15:56:39,054 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80049/CPDR-FFPE-ID-8_seg1_2020-01-28_09-50-24/CPDR-FFPE-ID-8_seg1.skyd into the system

11 May 2020 15:56:39,056 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80049/CPDR-FFPE-ID-8_seg1_2020-01-28_09-50-24/CPDR-FFPE-ID-8_seg1.skyd into the system

11 May 2020 15:56:39,056 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80049/CPDR-FFPE-ID-8_seg1_2020-01-28_09-50-24.sky.zip into the system

11 May 2020 15:56:39,060 INFO : Starting import from CPDR-FFPE-ID-8_seg1_2020-01-28_09-50-24.sky.zip

11 May 2020 15:56:39,067 INFO : Starting to import Skyline document from CPDR-FFPE-ID-8_seg1_2020-01-28_09-50-24.sky.zip

11 May 2020 15:56:39,088 INFO : Expanding CPDR-FFPE-ID-8_seg1.skyd

11 May 2020 15:56:39,699 INFO : Expanding CPDR-FFPE-ID-8_seg1.sky.view

11 May 2020 15:56:39,700 INFO : Expanding CPDR-FFPE-ID-8_seg1.sky

11 May 2020 15:56:39,710 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 15:56:39,713 INFO : 3% Done

11 May 2020 15:56:40,174 INFO : Inserting ANXA2

11 May 2020 15:56:40,178 INFO : 10% Done

11 May 2020 15:56:40,287 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:40,287 INFO : Inserting CAMKK2

11 May 2020 15:56:40,289 INFO : 16% Done

11 May 2020 15:56:40,368 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:40,368 INFO : Inserting CCND1

11 May 2020 15:56:40,370 INFO : 21% Done

11 May 2020 15:56:40,445 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:40,445 INFO : Inserting EGFR

11 May 2020 15:56:40,447 INFO : 26% Done

11 May 2020 15:56:40,718 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:40,718 INFO : Inserting ERG_pan

11 May 2020 15:56:40,723 INFO : 34% Done

11 May 2020 15:56:40,988 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:40,988 INFO : Inserting FOLH1

11 May 2020 15:56:40,993 INFO : 40% Done

11 May 2020 15:56:41,200 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:41,200 INFO : Inserting MMP9

11 May 2020 15:56:41,206 INFO : 48% Done

11 May 2020 15:56:41,471 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:41,472 INFO : Inserting MUC1

11 May 2020 15:56:41,476 INFO : 53% Done

11 May 2020 15:56:41,685 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:41,685 INFO : Inserting NCOA2

11 May 2020 15:56:41,690 INFO : 59% Done

11 May 2020 15:56:41,859 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:41,860 INFO : Inserting PSA

11 May 2020 15:56:41,864 INFO : 65% Done

11 May 2020 15:56:42,076 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:42,076 INFO : Inserting SMAD4

11 May 2020 15:56:42,080 INFO : 69% Done

11 May 2020 15:56:42,238 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:42,238 INFO : Inserting SPINK1

11 May 2020 15:56:42,243 INFO : 74% Done

11 May 2020 15:56:42,440 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:42,441 INFO : Inserting SPRC

11 May 2020 15:56:42,445 INFO : 79% Done

11 May 2020 15:56:42,625 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:42,625 INFO : Inserting TFF3

11 May 2020 15:56:42,630 INFO : 86% Done

11 May 2020 15:56:42,884 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:42,885 INFO : Inserting TGFB1

11 May 2020 15:56:42,889 INFO : 91% Done

11 May 2020 15:56:43,044 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:43,045 INFO : Inserting VEGFA

11 May 2020 15:56:43,050 INFO : 98% Done

11 May 2020 15:56:43,311 DEBUG: Total peptides inserted: 1

11 May 2020 15:56:43,311 INFO : Done parsing Skyline document.

11 May 2020 15:56:43,314 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:56:43,355 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:56:43,566 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:56:43,632 INFO : Cleaning up temp tables

11 May 2020 15:56:44,133 INFO : Completed import of Skyline document from CPDR-FFPE-ID-8_seg1_2020-01-28_09-50-24.sky.zip

11 May 2020 15:56:44,136 INFO : 100% Done

11 May 2020 15:56:44,148 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80049/CPDR-FFPE-ID-8_seg1_2020-01-28_09-50-24.sky.zip into the system

11 May 2020 15:56:44,148 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80185/CPDR-FFPE-ID-416_2020-01-28_11-04-53/CPDR-FFPE-ID-416.skyd into the system

11 May 2020 15:56:44,149 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80185/CPDR-FFPE-ID-416_2020-01-28_11-04-53/CPDR-FFPE-ID-416.skyd into the system

11 May 2020 15:56:44,149 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80185/CPDR-FFPE-ID-416_2020-01-28_11-04-53.sky.zip into the system

11 May 2020 15:56:44,154 INFO : Starting import from CPDR-FFPE-ID-416_2020-01-28_11-04-53.sky.zip

11 May 2020 15:56:44,161 INFO : Starting to import Skyline document from CPDR-FFPE-ID-416_2020-01-28_11-04-53.sky.zip

11 May 2020 15:56:44,177 INFO : Expanding CPDR-FFPE-ID-416.skyd

11 May 2020 15:56:44,614 INFO : Expanding CPDR-FFPE-ID-416.sky.view

11 May 2020 15:56:44,615 INFO : Expanding CPDR-FFPE-ID-416.sky

11 May 2020 15:56:45,129 INFO : Inserting TFF3

11 May 2020 15:56:45,132 INFO : 1% Done

11 May 2020 15:56:45,229 INFO : 2% Done

11 May 2020 15:56:45,394 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:45,395 INFO : Inserting AKT1

11 May 2020 15:56:45,396 INFO : 3% Done

11 May 2020 15:56:45,464 INFO : 4% Done

11 May 2020 15:56:45,581 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:45,581 INFO : Inserting AMACR

11 May 2020 15:56:45,585 INFO : 5% Done

11 May 2020 15:56:45,798 INFO : 6% Done

11 May 2020 15:56:46,394 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:46,395 INFO : Inserting ANDR

11 May 2020 15:56:46,399 INFO : 7% Done

11 May 2020 15:56:46,616 INFO : 8% Done

11 May 2020 15:56:46,834 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:46,834 INFO : Inserting ANXA2

11 May 2020 15:56:47,045 INFO : 9% Done

11 May 2020 15:56:47,259 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:47,259 INFO : Inserting AURKA

11 May 2020 15:56:47,264 INFO : 10% Done

11 May 2020 15:56:47,470 INFO : 11% Done

11 May 2020 15:56:47,678 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:47,678 INFO : Inserting BRAF

11 May 2020 15:56:47,683 INFO : 12% Done

11 May 2020 15:56:47,888 INFO : 13% Done

11 May 2020 15:56:48,090 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:48,091 INFO : Inserting CAMKK2

11 May 2020 15:56:48,095 INFO : 14% Done

11 May 2020 15:56:48,304 INFO : 15% Done

11 May 2020 15:56:48,505 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:48,505 INFO : Inserting CCND1

11 May 2020 15:56:48,510 INFO : 16% Done

11 May 2020 15:56:48,713 INFO : 17% Done

11 May 2020 15:56:48,874 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:48,874 INFO : Inserting CDN1A

11 May 2020 15:56:49,087 INFO : 18% Done

11 May 2020 15:56:49,290 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:49,290 INFO : Inserting CRISP3

11 May 2020 15:56:49,294 INFO : 19% Done

11 May 2020 15:56:49,501 INFO : 20% Done

11 May 2020 15:56:49,704 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:49,705 INFO : Inserting DCOR

11 May 2020 15:56:49,709 INFO : 21% Done

11 May 2020 15:56:49,917 INFO : 22% Done

11 May 2020 15:56:50,121 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:50,121 INFO : Inserting EGFR

11 May 2020 15:56:50,126 INFO : 23% Done

11 May 2020 15:56:50,335 INFO : 24% Done

11 May 2020 15:56:50,496 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:50,497 INFO : Inserting EZH2

11 May 2020 15:56:50,501 INFO : 25% Done

11 May 2020 15:56:50,907 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:50,908 INFO : Inserting FGFR1

11 May 2020 15:56:51,117 INFO : 26% Done

11 May 2020 15:56:51,318 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:51,318 INFO : Inserting FOLH1

11 May 2020 15:56:51,322 INFO : 27% Done

11 May 2020 15:56:51,535 INFO : 28% Done

11 May 2020 15:56:51,738 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:51,738 INFO : Inserting HIF1A

11 May 2020 15:56:51,742 INFO : 29% Done

11 May 2020 15:56:51,952 INFO : 30% Done

11 May 2020 15:56:52,155 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:52,155 INFO : Inserting HPN

11 May 2020 15:56:52,159 INFO : 31% Done

11 May 2020 15:56:52,367 INFO : 32% Done

11 May 2020 15:56:52,628 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:52,628 INFO : Inserting HSPB1

11 May 2020 15:56:52,632 INFO : 33% Done

11 May 2020 15:56:52,840 INFO : 34% Done

11 May 2020 15:56:53,048 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:53,048 INFO : Inserting HXC6

11 May 2020 15:56:53,053 INFO : 35% Done

11 May 2020 15:56:53,273 INFO : 36% Done

11 May 2020 15:56:53,476 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:53,476 INFO : Inserting KLK11

11 May 2020 15:56:53,480 INFO : 37% Done

11 May 2020 15:56:53,911 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:53,912 INFO : Inserting KLK2

11 May 2020 15:56:53,916 INFO : 38% Done

11 May 2020 15:56:54,123 INFO : 39% Done

11 May 2020 15:56:54,327 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:54,328 INFO : Inserting MMP2

11 May 2020 15:56:54,332 INFO : 40% Done

11 May 2020 15:56:54,543 INFO : 41% Done

11 May 2020 15:56:54,705 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:54,705 INFO : Inserting MMP9

11 May 2020 15:56:54,709 INFO : 42% Done

11 May 2020 15:56:54,912 INFO : 43% Done

11 May 2020 15:56:55,115 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:55,115 INFO : Inserting MUC1

11 May 2020 15:56:55,119 INFO : 44% Done

11 May 2020 15:56:55,323 INFO : 45% Done

11 May 2020 15:56:55,537 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:55,537 INFO : Inserting MUC6

11 May 2020 15:56:55,748 INFO : 46% Done

11 May 2020 15:56:55,958 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:55,958 INFO : Inserting MYC

11 May 2020 15:56:55,962 INFO : 47% Done

11 May 2020 15:56:56,179 INFO : 48% Done

11 May 2020 15:56:56,383 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:56,383 INFO : Inserting MYCN

11 May 2020 15:56:56,387 INFO : 49% Done

11 May 2020 15:56:56,596 INFO : 50% Done

11 May 2020 15:56:56,800 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:56,800 INFO : Inserting MYO6

11 May 2020 15:56:56,804 INFO : 51% Done

11 May 2020 15:56:57,018 INFO : 52% Done

11 May 2020 15:56:57,222 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:57,222 INFO : Inserting NCOA2

11 May 2020 15:56:57,226 INFO : 53% Done

11 May 2020 15:56:57,433 INFO : 54% Done

11 May 2020 15:56:57,640 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:57,641 INFO : Inserting NPY

11 May 2020 15:56:57,645 INFO : 55% Done

11 May 2020 15:56:57,856 INFO : 56% Done

11 May 2020 15:56:58,069 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:58,069 INFO : Inserting O51E2

11 May 2020 15:56:58,238 INFO : 57% Done

11 May 2020 15:56:58,443 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:58,443 INFO : Inserting OSTP

11 May 2020 15:56:58,447 INFO : 58% Done

11 May 2020 15:56:58,655 INFO : 59% Done

11 May 2020 15:56:58,858 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:58,858 INFO : Inserting P53

11 May 2020 15:56:58,863 INFO : 60% Done

11 May 2020 15:56:59,078 INFO : 61% Done

11 May 2020 15:56:59,486 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:59,487 INFO : Inserting PAFA

11 May 2020 15:56:59,491 INFO : 62% Done

11 May 2020 15:56:59,782 INFO : 63% Done

11 May 2020 15:56:59,984 DEBUG: Total peptides inserted: 2

11 May 2020 15:56:59,984 INFO : Inserting PGFRB

11 May 2020 15:56:59,988 INFO : 64% Done

11 May 2020 15:57:00,370 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:00,370 INFO : Inserting PK3CA

11 May 2020 15:57:00,374 INFO : 65% Done

11 May 2020 15:57:00,596 INFO : 66% Done

11 May 2020 15:57:00,826 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:00,826 INFO : Inserting RAF1

11 May 2020 15:57:00,830 INFO : 67% Done

11 May 2020 15:57:01,105 INFO : 68% Done

11 May 2020 15:57:01,290 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:01,290 INFO : Inserting SERPINI1

11 May 2020 15:57:01,294 INFO : 69% Done

11 May 2020 15:57:01,519 INFO : 70% Done

11 May 2020 15:57:01,699 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:01,699 INFO : Inserting SPINK1

11 May 2020 15:57:01,701 INFO : 71% Done

11 May 2020 15:57:01,880 INFO : 72% Done

11 May 2020 15:57:02,054 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:02,054 INFO : Inserting SPRC

11 May 2020 15:57:02,228 INFO : 73% Done

11 May 2020 15:57:02,383 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:02,384 INFO : Inserting TGFB1

11 May 2020 15:57:02,386 INFO : 74% Done

11 May 2020 15:57:02,724 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:02,724 INFO : Inserting TMPS2

11 May 2020 15:57:02,726 INFO : 75% Done

11 May 2020 15:57:02,901 INFO : 76% Done

11 May 2020 15:57:03,091 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:03,091 INFO : Inserting TPM2

11 May 2020 15:57:03,094 INFO : 77% Done

11 May 2020 15:57:03,275 INFO : 78% Done

11 May 2020 15:57:03,469 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:03,469 INFO : Inserting TWST1

11 May 2020 15:57:03,473 INFO : 79% Done

11 May 2020 15:57:03,973 INFO : 80% Done

11 May 2020 15:57:04,154 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:04,154 INFO : Inserting VEGFA

11 May 2020 15:57:04,156 INFO : 81% Done

11 May 2020 15:57:04,403 INFO : 82% Done

11 May 2020 15:57:04,590 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:04,590 INFO : Inserting PSA

11 May 2020 15:57:04,594 INFO : 83% Done

11 May 2020 15:57:04,958 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:04,958 INFO : Inserting ERG_pan

11 May 2020 15:57:04,960 INFO : 84% Done

11 May 2020 15:57:05,140 INFO : 85% Done

11 May 2020 15:57:05,318 INFO : 86% Done

11 May 2020 15:57:05,500 INFO : 87% Done

11 May 2020 15:57:05,671 INFO : 88% Done

11 May 2020 15:57:05,839 INFO : 89% Done

11 May 2020 15:57:06,004 INFO : 90% Done

11 May 2020 15:57:06,156 DEBUG: Total peptides inserted: 7

11 May 2020 15:57:06,156 INFO : Inserting ETV1

11 May 2020 15:57:06,158 INFO : 91% Done

11 May 2020 15:57:06,311 INFO : 92% Done

11 May 2020 15:57:06,463 INFO : 93% Done

11 May 2020 15:57:06,615 DEBUG: Total peptides inserted: 3

11 May 2020 15:57:06,616 INFO : Inserting ERG8

11 May 2020 15:57:06,618 INFO : 94% Done

11 May 2020 15:57:06,762 INFO : 95% Done

11 May 2020 15:57:06,906 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:06,906 INFO : Inserting SMAD4

11 May 2020 15:57:07,051 INFO : 96% Done

11 May 2020 15:57:07,163 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:07,163 INFO : Inserting STAT3

11 May 2020 15:57:07,165 INFO : 97% Done

11 May 2020 15:57:07,302 INFO : 98% Done

11 May 2020 15:57:07,438 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:07,438 INFO : Done parsing Skyline document.

11 May 2020 15:57:07,439 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:57:07,548 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:57:08,150 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:57:08,333 INFO : Cleaning up temp tables

11 May 2020 15:57:08,761 INFO : Completed import of Skyline document from CPDR-FFPE-ID-416_2020-01-28_11-04-53.sky.zip

11 May 2020 15:57:08,763 INFO : 100% Done

11 May 2020 15:57:08,775 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80185/CPDR-FFPE-ID-416_2020-01-28_11-04-53.sky.zip into the system

11 May 2020 15:57:08,775 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80183/CPDR-FFPE-ID-346_2020-01-28_11-03-33/CPDR-FFPE-ID-346.skyd into the system

11 May 2020 15:57:08,776 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80183/CPDR-FFPE-ID-346_2020-01-28_11-03-33/CPDR-FFPE-ID-346.skyd into the system

11 May 2020 15:57:08,777 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80183/CPDR-FFPE-ID-346_2020-01-28_11-03-33.sky.zip into the system

11 May 2020 15:57:08,782 INFO : Starting import from CPDR-FFPE-ID-346_2020-01-28_11-03-33.sky.zip

11 May 2020 15:57:08,789 INFO : Starting to import Skyline document from CPDR-FFPE-ID-346_2020-01-28_11-03-33.sky.zip

11 May 2020 15:57:08,808 INFO : Expanding CPDR-FFPE-ID-346.skyd

11 May 2020 15:57:09,216 INFO : Expanding CPDR-FFPE-ID-346.sky.view

11 May 2020 15:57:09,217 INFO : Expanding CPDR-FFPE-ID-346.sky

11 May 2020 15:57:09,724 INFO : Inserting TFF3

11 May 2020 15:57:09,730 INFO : 1% Done

11 May 2020 15:57:09,919 INFO : 2% Done

11 May 2020 15:57:10,095 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:10,095 INFO : Inserting AKT1

11 May 2020 15:57:10,097 INFO : 3% Done

11 May 2020 15:57:10,237 INFO : 4% Done

11 May 2020 15:57:10,412 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:10,413 INFO : Inserting AMACR

11 May 2020 15:57:10,415 INFO : 5% Done

11 May 2020 15:57:10,585 INFO : 6% Done

11 May 2020 15:57:10,740 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:10,740 INFO : Inserting ANDR

11 May 2020 15:57:10,742 INFO : 7% Done

11 May 2020 15:57:11,048 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:11,048 INFO : 8% Done

11 May 2020 15:57:11,048 INFO : Inserting ANXA2

11 May 2020 15:57:11,196 INFO : 9% Done

11 May 2020 15:57:11,343 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:11,343 INFO : Inserting AURKA

11 May 2020 15:57:11,345 INFO : 10% Done

11 May 2020 15:57:11,490 INFO : 11% Done

11 May 2020 15:57:11,652 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:11,652 INFO : Inserting BRAF

11 May 2020 15:57:11,654 INFO : 12% Done

11 May 2020 15:57:11,793 INFO : 13% Done

11 May 2020 15:57:11,929 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:11,930 INFO : Inserting CAMKK2

11 May 2020 15:57:11,932 INFO : 14% Done

11 May 2020 15:57:12,074 INFO : 15% Done

11 May 2020 15:57:12,224 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:12,225 INFO : Inserting CCND1

11 May 2020 15:57:12,227 INFO : 16% Done

11 May 2020 15:57:12,378 INFO : 17% Done

11 May 2020 15:57:12,500 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:12,500 INFO : Inserting CDN1A

11 May 2020 15:57:12,666 INFO : 18% Done

11 May 2020 15:57:12,820 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:12,821 INFO : Inserting CRISP3

11 May 2020 15:57:12,823 INFO : 19% Done

11 May 2020 15:57:12,970 INFO : 20% Done

11 May 2020 15:57:13,170 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:13,170 INFO : Inserting DCOR

11 May 2020 15:57:13,172 INFO : 21% Done

11 May 2020 15:57:13,313 INFO : 22% Done

11 May 2020 15:57:13,452 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:13,453 INFO : Inserting EGFR

11 May 2020 15:57:13,455 INFO : 23% Done

11 May 2020 15:57:13,597 INFO : 24% Done

11 May 2020 15:57:13,724 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:13,724 INFO : Inserting EZH2

11 May 2020 15:57:13,727 INFO : 25% Done

11 May 2020 15:57:14,047 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:14,048 INFO : Inserting FGFR1

11 May 2020 15:57:14,219 INFO : 26% Done

11 May 2020 15:57:14,369 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:14,369 INFO : Inserting FOLH1

11 May 2020 15:57:14,371 INFO : 27% Done

11 May 2020 15:57:14,548 INFO : 28% Done

11 May 2020 15:57:14,720 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:14,720 INFO : Inserting HIF1A

11 May 2020 15:57:14,722 INFO : 29% Done

11 May 2020 15:57:14,870 INFO : 30% Done

11 May 2020 15:57:15,019 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:15,019 INFO : Inserting HPN

11 May 2020 15:57:15,021 INFO : 31% Done

11 May 2020 15:57:15,166 INFO : 32% Done

11 May 2020 15:57:15,305 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:15,305 INFO : Inserting HSPB1

11 May 2020 15:57:15,307 INFO : 33% Done

11 May 2020 15:57:15,446 INFO : 34% Done

11 May 2020 15:57:15,589 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:15,589 INFO : Inserting HXC6

11 May 2020 15:57:15,591 INFO : 35% Done

11 May 2020 15:57:15,728 INFO : 36% Done

11 May 2020 15:57:15,863 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:15,863 INFO : Inserting KLK11

11 May 2020 15:57:15,865 INFO : 37% Done

11 May 2020 15:57:16,177 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:16,177 INFO : Inserting KLK2

11 May 2020 15:57:16,180 INFO : 38% Done

11 May 2020 15:57:16,360 INFO : 39% Done

11 May 2020 15:57:16,540 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:16,540 INFO : Inserting MMP2

11 May 2020 15:57:16,543 INFO : 40% Done

11 May 2020 15:57:16,713 INFO : 41% Done

11 May 2020 15:57:16,847 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:16,847 INFO : Inserting MMP9

11 May 2020 15:57:16,850 INFO : 42% Done

11 May 2020 15:57:17,021 INFO : 43% Done

11 May 2020 15:57:17,197 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:17,197 INFO : Inserting MUC1

11 May 2020 15:57:17,199 INFO : 44% Done

11 May 2020 15:57:18,067 INFO : 45% Done

11 May 2020 15:57:18,248 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:18,248 INFO : Inserting MUC6

11 May 2020 15:57:18,427 INFO : 46% Done

11 May 2020 15:57:18,607 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:18,607 INFO : Inserting MYC

11 May 2020 15:57:18,609 INFO : 47% Done

11 May 2020 15:57:18,803 INFO : 48% Done

11 May 2020 15:57:18,977 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:18,977 INFO : Inserting MYCN

11 May 2020 15:57:18,980 INFO : 49% Done

11 May 2020 15:57:19,162 INFO : 50% Done

11 May 2020 15:57:19,341 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:19,342 INFO : Inserting MYO6

11 May 2020 15:57:19,344 INFO : 51% Done

11 May 2020 15:57:19,522 INFO : 52% Done

11 May 2020 15:57:19,698 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:19,698 INFO : Inserting NCOA2

11 May 2020 15:57:19,701 INFO : 53% Done

11 May 2020 15:57:19,924 INFO : 54% Done

11 May 2020 15:57:20,102 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:20,102 INFO : Inserting NPY

11 May 2020 15:57:20,104 INFO : 55% Done

11 May 2020 15:57:20,294 INFO : 56% Done

11 May 2020 15:57:20,502 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:20,502 INFO : Inserting O51E2

11 May 2020 15:57:20,675 INFO : 57% Done

11 May 2020 15:57:20,878 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:20,879 INFO : Inserting OSTP

11 May 2020 15:57:20,883 INFO : 58% Done

11 May 2020 15:57:21,089 INFO : 59% Done

11 May 2020 15:57:21,306 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:21,306 INFO : Inserting P53

11 May 2020 15:57:21,311 INFO : 60% Done

11 May 2020 15:57:21,518 INFO : 61% Done

11 May 2020 15:57:21,721 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:21,721 INFO : Inserting PAFA

11 May 2020 15:57:21,725 INFO : 62% Done

11 May 2020 15:57:21,932 INFO : 63% Done

11 May 2020 15:57:22,134 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:22,134 INFO : Inserting PGFRB

11 May 2020 15:57:22,308 INFO : 64% Done

11 May 2020 15:57:22,540 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:22,540 INFO : Inserting PK3CA

11 May 2020 15:57:22,544 INFO : 65% Done

11 May 2020 15:57:22,750 INFO : 66% Done

11 May 2020 15:57:22,952 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:22,952 INFO : Inserting RAF1

11 May 2020 15:57:22,956 INFO : 67% Done

11 May 2020 15:57:23,161 INFO : 68% Done

11 May 2020 15:57:23,323 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:23,324 INFO : Inserting SERPINI1

11 May 2020 15:57:23,328 INFO : 69% Done

11 May 2020 15:57:23,533 INFO : 70% Done

11 May 2020 15:57:23,734 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:23,734 INFO : Inserting SPINK1

11 May 2020 15:57:23,738 INFO : 71% Done

11 May 2020 15:57:23,942 INFO : 72% Done

11 May 2020 15:57:24,146 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:24,146 INFO : Inserting SPRC

11 May 2020 15:57:24,150 INFO : 73% Done

11 May 2020 15:57:24,558 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:24,558 INFO : Inserting TGFB1

11 May 2020 15:57:24,562 INFO : 74% Done

11 May 2020 15:57:24,978 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:24,978 INFO : Inserting TMPS2

11 May 2020 15:57:24,983 INFO : 75% Done

11 May 2020 15:57:25,193 INFO : 76% Done

11 May 2020 15:57:25,395 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:25,395 INFO : Inserting TPM2

11 May 2020 15:57:25,399 INFO : 77% Done

11 May 2020 15:57:25,609 INFO : 78% Done

11 May 2020 15:57:25,813 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:25,813 INFO : Inserting TWST1

11 May 2020 15:57:25,817 INFO : 79% Done

11 May 2020 15:57:26,024 INFO : 80% Done

11 May 2020 15:57:26,256 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:26,256 INFO : Inserting VEGFA

11 May 2020 15:57:26,260 INFO : 81% Done

11 May 2020 15:57:26,496 INFO : 82% Done

11 May 2020 15:57:26,730 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:26,730 INFO : Inserting PSA

11 May 2020 15:57:26,735 INFO : 83% Done

11 May 2020 15:57:26,977 INFO : 84% Done

11 May 2020 15:57:27,180 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:27,180 INFO : Inserting ERG_pan

11 May 2020 15:57:27,396 INFO : 85% Done

11 May 2020 15:57:27,603 INFO : 86% Done

11 May 2020 15:57:27,812 INFO : 87% Done

11 May 2020 15:57:28,018 INFO : 88% Done

11 May 2020 15:57:28,225 INFO : 89% Done

11 May 2020 15:57:28,428 INFO : 90% Done

11 May 2020 15:57:28,637 DEBUG: Total peptides inserted: 7

11 May 2020 15:57:28,637 INFO : Inserting ETV1

11 May 2020 15:57:28,641 INFO : 91% Done

11 May 2020 15:57:28,850 INFO : 92% Done

11 May 2020 15:57:29,089 INFO : 93% Done

11 May 2020 15:57:29,337 DEBUG: Total peptides inserted: 3

11 May 2020 15:57:29,337 INFO : Inserting ERG8

11 May 2020 15:57:29,342 INFO : 94% Done

11 May 2020 15:57:29,553 INFO : 95% Done

11 May 2020 15:57:29,754 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:29,754 INFO : Inserting SMAD4

11 May 2020 15:57:29,977 INFO : 96% Done

11 May 2020 15:57:30,200 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:30,200 INFO : Inserting STAT3

11 May 2020 15:57:30,204 INFO : 97% Done

11 May 2020 15:57:30,408 INFO : 98% Done

11 May 2020 15:57:30,624 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:30,624 INFO : Done parsing Skyline document.

11 May 2020 15:57:30,626 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:57:30,774 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:57:31,637 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:57:31,817 INFO : Cleaning up temp tables

11 May 2020 15:57:32,131 INFO : Completed import of Skyline document from CPDR-FFPE-ID-346_2020-01-28_11-03-33.sky.zip

11 May 2020 15:57:32,132 INFO : 100% Done

11 May 2020 15:57:32,138 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80183/CPDR-FFPE-ID-346_2020-01-28_11-03-33.sky.zip into the system

11 May 2020 15:57:32,138 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80174/CPDR-FFPE-ID-344_2020-01-28_10-57-38/CPDR-FFPE-ID-344.skyd into the system

11 May 2020 15:57:32,138 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80174/CPDR-FFPE-ID-344_2020-01-28_10-57-38/CPDR-FFPE-ID-344.skyd into the system

11 May 2020 15:57:32,139 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80174/CPDR-FFPE-ID-344_2020-01-28_10-57-38.sky.zip into the system

11 May 2020 15:57:32,141 INFO : Starting import from CPDR-FFPE-ID-344_2020-01-28_10-57-38.sky.zip

11 May 2020 15:57:32,144 INFO : Starting to import Skyline document from CPDR-FFPE-ID-344_2020-01-28_10-57-38.sky.zip

11 May 2020 15:57:32,151 INFO : Expanding CPDR-FFPE-ID-344.skyd

11 May 2020 15:57:32,321 INFO : Expanding CPDR-FFPE-ID-344.sky.view

11 May 2020 15:57:32,322 INFO : Expanding CPDR-FFPE-ID-344.sky

11 May 2020 15:57:32,580 INFO : Inserting TFF3

11 May 2020 15:57:32,584 INFO : 1% Done

11 May 2020 15:57:32,671 INFO : 2% Done

11 May 2020 15:57:32,752 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:32,752 INFO : Inserting AKT1

11 May 2020 15:57:32,754 INFO : 3% Done

11 May 2020 15:57:32,821 INFO : 4% Done

11 May 2020 15:57:33,646 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:33,646 INFO : Inserting AMACR

11 May 2020 15:57:33,650 INFO : 5% Done

11 May 2020 15:57:33,897 INFO : 6% Done

11 May 2020 15:57:34,117 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:34,118 INFO : Inserting ANDR

11 May 2020 15:57:34,122 INFO : 7% Done

11 May 2020 15:57:34,340 INFO : 8% Done

11 May 2020 15:57:34,553 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:34,553 INFO : Inserting ANXA2

11 May 2020 15:57:34,773 INFO : 9% Done

11 May 2020 15:57:34,967 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:34,967 INFO : Inserting AURKA

11 May 2020 15:57:34,971 INFO : 10% Done

11 May 2020 15:57:35,199 INFO : 11% Done

11 May 2020 15:57:35,426 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:35,426 INFO : Inserting BRAF

11 May 2020 15:57:35,430 INFO : 12% Done

11 May 2020 15:57:35,631 INFO : 13% Done

11 May 2020 15:57:35,867 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:35,867 INFO : Inserting CAMKK2

11 May 2020 15:57:35,872 INFO : 14% Done

11 May 2020 15:57:36,074 INFO : 15% Done

11 May 2020 15:57:36,267 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:36,267 INFO : Inserting CCND1

11 May 2020 15:57:36,271 INFO : 16% Done

11 May 2020 15:57:36,471 INFO : 17% Done

11 May 2020 15:57:36,624 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:36,624 INFO : Inserting CDN1A

11 May 2020 15:57:36,828 INFO : 18% Done

11 May 2020 15:57:37,131 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:37,131 INFO : Inserting CRISP3

11 May 2020 15:57:37,135 INFO : 19% Done

11 May 2020 15:57:37,331 INFO : 20% Done

11 May 2020 15:57:37,530 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:37,530 INFO : Inserting DCOR

11 May 2020 15:57:37,534 INFO : 21% Done

11 May 2020 15:57:37,731 INFO : 22% Done

11 May 2020 15:57:37,926 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:37,926 INFO : Inserting EGFR

11 May 2020 15:57:37,930 INFO : 23% Done

11 May 2020 15:57:38,128 INFO : 24% Done

11 May 2020 15:57:38,282 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:38,282 INFO : Inserting EZH2

11 May 2020 15:57:38,286 INFO : 25% Done

11 May 2020 15:57:38,691 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:38,692 INFO : Inserting FGFR1

11 May 2020 15:57:38,896 INFO : 26% Done

11 May 2020 15:57:39,088 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:39,089 INFO : Inserting FOLH1

11 May 2020 15:57:39,093 INFO : 27% Done

11 May 2020 15:57:39,295 INFO : 28% Done

11 May 2020 15:57:39,490 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:39,490 INFO : Inserting HIF1A

11 May 2020 15:57:39,494 INFO : 29% Done

11 May 2020 15:57:39,690 INFO : 30% Done

11 May 2020 15:57:39,888 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:39,888 INFO : Inserting HPN

11 May 2020 15:57:39,893 INFO : 31% Done

11 May 2020 15:57:40,117 INFO : 32% Done

11 May 2020 15:57:40,350 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:40,350 INFO : Inserting HSPB1

11 May 2020 15:57:40,354 INFO : 33% Done

11 May 2020 15:57:40,578 INFO : 34% Done

11 May 2020 15:57:40,798 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:40,798 INFO : Inserting HXC6

11 May 2020 15:57:40,802 INFO : 35% Done

11 May 2020 15:57:41,037 INFO : 36% Done

11 May 2020 15:57:41,257 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:41,257 INFO : Inserting KLK11

11 May 2020 15:57:41,261 INFO : 37% Done

11 May 2020 15:57:41,720 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:41,720 INFO : Inserting KLK2

11 May 2020 15:57:41,724 INFO : 38% Done

11 May 2020 15:57:41,992 INFO : 39% Done

11 May 2020 15:57:42,215 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:42,215 INFO : Inserting MMP2

11 May 2020 15:57:42,219 INFO : 40% Done

11 May 2020 15:57:42,442 INFO : 41% Done

11 May 2020 15:57:42,618 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:42,618 INFO : Inserting MMP9

11 May 2020 15:57:42,623 INFO : 42% Done

11 May 2020 15:57:42,857 INFO : 43% Done

11 May 2020 15:57:43,077 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:43,077 INFO : Inserting MUC1

11 May 2020 15:57:43,081 INFO : 44% Done

11 May 2020 15:57:43,304 INFO : 45% Done

11 May 2020 15:57:43,537 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:43,537 INFO : Inserting MUC6

11 May 2020 15:57:43,541 INFO : 46% Done

11 May 2020 15:57:43,989 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:43,989 INFO : Inserting MYC

11 May 2020 15:57:43,994 INFO : 47% Done

11 May 2020 15:57:44,217 INFO : 48% Done

11 May 2020 15:57:44,437 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:44,438 INFO : Inserting MYCN

11 May 2020 15:57:44,442 INFO : 49% Done

11 May 2020 15:57:44,665 INFO : 50% Done

11 May 2020 15:57:44,884 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:44,884 INFO : Inserting MYO6

11 May 2020 15:57:44,889 INFO : 51% Done

11 May 2020 15:57:45,111 INFO : 52% Done

11 May 2020 15:57:45,329 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:45,329 INFO : Inserting NCOA2

11 May 2020 15:57:45,333 INFO : 53% Done

11 May 2020 15:57:45,555 INFO : 54% Done

11 May 2020 15:57:45,774 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:45,775 INFO : Inserting NPY

11 May 2020 15:57:45,779 INFO : 55% Done

11 May 2020 15:57:46,001 INFO : 56% Done

11 May 2020 15:57:46,220 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:46,221 INFO : Inserting O51E2

11 May 2020 15:57:46,402 INFO : 57% Done

11 May 2020 15:57:46,638 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:46,638 INFO : Inserting OSTP

11 May 2020 15:57:46,642 INFO : 58% Done

11 May 2020 15:57:46,889 INFO : 59% Done

11 May 2020 15:57:47,124 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:47,124 INFO : Inserting P53

11 May 2020 15:57:47,128 INFO : 60% Done

11 May 2020 15:57:47,351 INFO : 61% Done

11 May 2020 15:57:47,571 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:47,572 INFO : Inserting PAFA

11 May 2020 15:57:47,576 INFO : 62% Done

11 May 2020 15:57:47,799 INFO : 63% Done

11 May 2020 15:57:48,021 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:48,022 INFO : Inserting PGFRB

11 May 2020 15:57:48,223 INFO : 64% Done

11 May 2020 15:57:48,443 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:48,443 INFO : Inserting PK3CA

11 May 2020 15:57:48,447 INFO : 65% Done

11 May 2020 15:57:48,670 INFO : 66% Done

11 May 2020 15:57:48,890 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:48,891 INFO : Inserting RAF1

11 May 2020 15:57:48,895 INFO : 67% Done

11 May 2020 15:57:49,117 INFO : 68% Done

11 May 2020 15:57:49,292 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:49,292 INFO : Inserting SERPINI1

11 May 2020 15:57:49,297 INFO : 69% Done

11 May 2020 15:57:49,525 INFO : 70% Done

11 May 2020 15:57:49,757 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:49,757 INFO : Inserting SPINK1

11 May 2020 15:57:49,761 INFO : 71% Done

11 May 2020 15:57:49,985 INFO : 72% Done

11 May 2020 15:57:50,205 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:50,205 INFO : Inserting SPRC

11 May 2020 15:57:50,431 INFO : 73% Done

11 May 2020 15:57:50,650 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:50,650 INFO : Inserting TGFB1

11 May 2020 15:57:50,655 INFO : 74% Done

11 May 2020 15:57:51,096 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:51,096 INFO : Inserting TMPS2

11 May 2020 15:57:51,100 INFO : 75% Done

11 May 2020 15:57:51,322 INFO : 76% Done

11 May 2020 15:57:51,543 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:51,543 INFO : Inserting TPM2

11 May 2020 15:57:51,547 INFO : 77% Done

11 May 2020 15:57:51,790 INFO : 78% Done

11 May 2020 15:57:52,011 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:52,011 INFO : Inserting TWST1

11 May 2020 15:57:52,016 INFO : 79% Done

11 May 2020 15:57:52,240 INFO : 80% Done

11 May 2020 15:57:52,458 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:52,459 INFO : Inserting VEGFA

11 May 2020 15:57:52,463 INFO : 81% Done

11 May 2020 15:57:52,686 INFO : 82% Done

11 May 2020 15:57:52,925 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:52,926 INFO : Inserting PSA

11 May 2020 15:57:52,930 INFO : 83% Done

11 May 2020 15:57:53,379 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:53,379 INFO : 84% Done

11 May 2020 15:57:53,379 INFO : Inserting ERG_pan

11 May 2020 15:57:53,606 INFO : 85% Done

11 May 2020 15:57:53,957 INFO : 86% Done

11 May 2020 15:57:54,182 INFO : 87% Done

11 May 2020 15:57:54,477 INFO : 88% Done

11 May 2020 15:57:54,700 INFO : 89% Done

11 May 2020 15:57:54,944 INFO : 90% Done

11 May 2020 15:57:55,179 DEBUG: Total peptides inserted: 7

11 May 2020 15:57:55,179 INFO : Inserting ETV1

11 May 2020 15:57:55,183 INFO : 91% Done

11 May 2020 15:57:55,406 INFO : 92% Done

11 May 2020 15:57:55,627 INFO : 93% Done

11 May 2020 15:57:55,847 DEBUG: Total peptides inserted: 3

11 May 2020 15:57:55,847 INFO : Inserting ERG8

11 May 2020 15:57:55,851 INFO : 94% Done

11 May 2020 15:57:56,077 INFO : 95% Done

11 May 2020 15:57:56,295 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:56,295 INFO : Inserting SMAD4

11 May 2020 15:57:56,300 INFO : 96% Done

11 May 2020 15:57:56,715 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:56,715 INFO : Inserting STAT3

11 May 2020 15:57:56,719 INFO : 97% Done

11 May 2020 15:57:56,941 INFO : 98% Done

11 May 2020 15:57:57,161 DEBUG: Total peptides inserted: 2

11 May 2020 15:57:57,161 INFO : Done parsing Skyline document.

11 May 2020 15:57:57,163 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:57:57,306 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:57:58,310 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:57:58,607 INFO : Cleaning up temp tables

11 May 2020 15:57:58,972 INFO : Completed import of Skyline document from CPDR-FFPE-ID-344_2020-01-28_10-57-38.sky.zip

11 May 2020 15:57:58,974 INFO : 100% Done

11 May 2020 15:57:58,982 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80174/CPDR-FFPE-ID-344_2020-01-28_10-57-38.sky.zip into the system

11 May 2020 15:57:58,983 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80187/CPDR-FFPE-ID-384_2020-01-28_11-06-23/CPDR-FFPE-ID-384.skyd into the system

11 May 2020 15:57:58,984 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80187/CPDR-FFPE-ID-384_2020-01-28_11-06-23/CPDR-FFPE-ID-384.skyd into the system

11 May 2020 15:57:58,984 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80187/CPDR-FFPE-ID-384_2020-01-28_11-06-23.sky.zip into the system

11 May 2020 15:57:58,988 INFO : Starting import from CPDR-FFPE-ID-384_2020-01-28_11-06-23.sky.zip

11 May 2020 15:57:58,993 INFO : Starting to import Skyline document from CPDR-FFPE-ID-384_2020-01-28_11-06-23.sky.zip

11 May 2020 15:57:59,010 INFO : Expanding CPDR-FFPE-ID-384.skyd

11 May 2020 15:57:59,443 INFO : Expanding CPDR-FFPE-ID-384.sky.view

11 May 2020 15:57:59,444 INFO : Expanding CPDR-FFPE-ID-384.sky

11 May 2020 15:57:59,825 INFO : Inserting TFF3

11 May 2020 15:57:59,831 INFO : 1% Done

11 May 2020 15:58:00,028 INFO : 2% Done

11 May 2020 15:58:00,311 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:00,311 INFO : Inserting AKT1

11 May 2020 15:58:00,315 INFO : 3% Done

11 May 2020 15:58:00,488 INFO : 4% Done

11 May 2020 15:58:00,689 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:00,689 INFO : Inserting AMACR

11 May 2020 15:58:00,693 INFO : 5% Done

11 May 2020 15:58:00,898 INFO : 6% Done

11 May 2020 15:58:01,100 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:01,100 INFO : Inserting ANDR

11 May 2020 15:58:01,104 INFO : 7% Done

11 May 2020 15:58:01,312 INFO : 8% Done

11 May 2020 15:58:01,514 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:01,514 INFO : Inserting ANXA2

11 May 2020 15:58:01,786 INFO : 9% Done

11 May 2020 15:58:01,988 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:01,988 INFO : Inserting AURKA

11 May 2020 15:58:01,992 INFO : 10% Done

11 May 2020 15:58:02,201 INFO : 11% Done

11 May 2020 15:58:02,409 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:02,409 INFO : Inserting BRAF

11 May 2020 15:58:02,413 INFO : 12% Done

11 May 2020 15:58:02,621 INFO : 13% Done

11 May 2020 15:58:02,833 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:02,833 INFO : Inserting CAMKK2

11 May 2020 15:58:02,837 INFO : 14% Done

11 May 2020 15:58:03,046 INFO : 15% Done

11 May 2020 15:58:03,254 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:03,254 INFO : Inserting CCND1

11 May 2020 15:58:03,258 INFO : 16% Done

11 May 2020 15:58:03,503 INFO : 17% Done

11 May 2020 15:58:03,672 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:03,672 INFO : Inserting CDN1A

11 May 2020 15:58:03,888 INFO : 18% Done

11 May 2020 15:58:04,093 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:04,093 INFO : Inserting CRISP3

11 May 2020 15:58:04,097 INFO : 19% Done

11 May 2020 15:58:04,309 INFO : 20% Done

11 May 2020 15:58:04,520 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:04,520 INFO : Inserting DCOR

11 May 2020 15:58:04,525 INFO : 21% Done

11 May 2020 15:58:04,736 INFO : 22% Done

11 May 2020 15:58:04,942 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:04,942 INFO : Inserting EGFR

11 May 2020 15:58:04,946 INFO : 23% Done

11 May 2020 15:58:05,250 INFO : 24% Done

11 May 2020 15:58:05,419 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:05,419 INFO : Inserting EZH2

11 May 2020 15:58:05,423 INFO : 25% Done

11 May 2020 15:58:05,836 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:05,837 INFO : Inserting FGFR1

11 May 2020 15:58:06,370 INFO : 26% Done

11 May 2020 15:58:06,576 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:06,576 INFO : Inserting FOLH1

11 May 2020 15:58:06,580 INFO : 27% Done

11 May 2020 15:58:06,789 INFO : 28% Done

11 May 2020 15:58:06,995 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:06,995 INFO : Inserting HIF1A

11 May 2020 15:58:06,999 INFO : 29% Done

11 May 2020 15:58:07,208 INFO : 30% Done

11 May 2020 15:58:07,415 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:07,415 INFO : Inserting HPN

11 May 2020 15:58:07,419 INFO : 31% Done

11 May 2020 15:58:07,631 INFO : 32% Done

11 May 2020 15:58:07,840 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:07,840 INFO : Inserting HSPB1

11 May 2020 15:58:07,845 INFO : 33% Done

11 May 2020 15:58:08,053 INFO : 34% Done

11 May 2020 15:58:08,256 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:08,256 INFO : Inserting HXC6

11 May 2020 15:58:08,260 INFO : 35% Done

11 May 2020 15:58:08,470 INFO : 36% Done

11 May 2020 15:58:08,664 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:08,664 INFO : Inserting KLK11

11 May 2020 15:58:08,855 INFO : 37% Done

11 May 2020 15:58:09,043 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:09,043 INFO : Inserting KLK2

11 May 2020 15:58:09,047 INFO : 38% Done

11 May 2020 15:58:09,246 INFO : 39% Done

11 May 2020 15:58:09,491 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:09,491 INFO : Inserting MMP2

11 May 2020 15:58:09,495 INFO : 40% Done

11 May 2020 15:58:09,703 INFO : 41% Done

11 May 2020 15:58:09,867 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:09,867 INFO : Inserting MMP9

11 May 2020 15:58:09,871 INFO : 42% Done

11 May 2020 15:58:10,083 INFO : 43% Done

11 May 2020 15:58:10,288 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:10,288 INFO : Inserting MUC1

11 May 2020 15:58:10,292 INFO : 44% Done

11 May 2020 15:58:10,500 INFO : 45% Done

11 May 2020 15:58:10,707 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:10,707 INFO : Inserting MUC6

11 May 2020 15:58:10,711 INFO : 46% Done

11 May 2020 15:58:11,121 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:11,122 INFO : Inserting MYC

11 May 2020 15:58:11,126 INFO : 47% Done

11 May 2020 15:58:11,335 INFO : 48% Done

11 May 2020 15:58:11,556 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:11,557 INFO : Inserting MYCN

11 May 2020 15:58:11,561 INFO : 49% Done

11 May 2020 15:58:11,767 INFO : 50% Done

11 May 2020 15:58:11,970 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:11,970 INFO : Inserting MYO6

11 May 2020 15:58:11,974 INFO : 51% Done

11 May 2020 15:58:12,294 INFO : 52% Done

11 May 2020 15:58:12,517 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:12,517 INFO : Inserting NCOA2

11 May 2020 15:58:12,521 INFO : 53% Done

11 May 2020 15:58:12,710 INFO : 54% Done

11 May 2020 15:58:12,894 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:12,894 INFO : Inserting NPY

11 May 2020 15:58:12,898 INFO : 55% Done

11 May 2020 15:58:13,108 INFO : 56% Done

11 May 2020 15:58:13,312 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:13,312 INFO : Inserting O51E2

11 May 2020 15:58:13,483 INFO : 57% Done

11 May 2020 15:58:13,765 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:13,765 INFO : Inserting OSTP

11 May 2020 15:58:13,769 INFO : 58% Done

11 May 2020 15:58:13,979 INFO : 59% Done

11 May 2020 15:58:14,183 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:14,183 INFO : Inserting P53

11 May 2020 15:58:14,188 INFO : 60% Done

11 May 2020 15:58:14,437 INFO : 61% Done

11 May 2020 15:58:14,642 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:14,642 INFO : Inserting PAFA

11 May 2020 15:58:14,646 INFO : 62% Done

11 May 2020 15:58:14,865 INFO : 63% Done

11 May 2020 15:58:15,069 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:15,069 INFO : Inserting PGFRB

11 May 2020 15:58:15,073 INFO : 64% Done

11 May 2020 15:58:15,446 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:15,446 INFO : Inserting PK3CA

11 May 2020 15:58:15,450 INFO : 65% Done

11 May 2020 15:58:15,655 INFO : 66% Done

11 May 2020 15:58:15,873 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:15,873 INFO : Inserting RAF1

11 May 2020 15:58:15,877 INFO : 67% Done

11 May 2020 15:58:16,083 INFO : 68% Done

11 May 2020 15:58:16,247 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:16,248 INFO : Inserting SERPINI1

11 May 2020 15:58:16,252 INFO : 69% Done

11 May 2020 15:58:16,461 INFO : 70% Done

11 May 2020 15:58:16,739 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:16,739 INFO : Inserting SPINK1

11 May 2020 15:58:16,743 INFO : 71% Done

11 May 2020 15:58:16,954 INFO : 72% Done

11 May 2020 15:58:17,193 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:17,193 INFO : Inserting SPRC

11 May 2020 15:58:17,405 INFO : 73% Done

11 May 2020 15:58:17,689 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:17,689 INFO : Inserting TGFB1

11 May 2020 15:58:17,693 INFO : 74% Done

11 May 2020 15:58:18,106 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:18,107 INFO : Inserting TMPS2

11 May 2020 15:58:18,111 INFO : 75% Done

11 May 2020 15:58:18,317 INFO : 76% Done

11 May 2020 15:58:18,523 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:18,524 INFO : Inserting TPM2

11 May 2020 15:58:18,528 INFO : 77% Done

11 May 2020 15:58:18,738 INFO : 78% Done

11 May 2020 15:58:18,943 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:18,943 INFO : Inserting TWST1

11 May 2020 15:58:18,948 INFO : 79% Done

11 May 2020 15:58:19,156 INFO : 80% Done

11 May 2020 15:58:19,360 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:19,360 INFO : Inserting VEGFA

11 May 2020 15:58:19,364 INFO : 81% Done

11 May 2020 15:58:19,573 INFO : 82% Done

11 May 2020 15:58:19,775 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:19,776 INFO : Inserting PSA

11 May 2020 15:58:19,780 INFO : 83% Done

11 May 2020 15:58:20,198 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:20,198 INFO : Inserting ERG_pan

11 May 2020 15:58:20,202 INFO : 84% Done

11 May 2020 15:58:20,409 INFO : 85% Done

11 May 2020 15:58:20,617 INFO : 86% Done

11 May 2020 15:58:20,824 INFO : 87% Done

11 May 2020 15:58:21,028 INFO : 88% Done

11 May 2020 15:58:21,233 INFO : 89% Done

11 May 2020 15:58:21,438 INFO : 90% Done

11 May 2020 15:58:21,716 DEBUG: Total peptides inserted: 7

11 May 2020 15:58:21,717 INFO : Inserting ETV1

11 May 2020 15:58:21,721 INFO : 91% Done

11 May 2020 15:58:21,935 INFO : 92% Done

11 May 2020 15:58:22,262 INFO : 93% Done

11 May 2020 15:58:22,507 DEBUG: Total peptides inserted: 3

11 May 2020 15:58:22,507 INFO : Inserting ERG8

11 May 2020 15:58:22,512 INFO : 94% Done

11 May 2020 15:58:22,721 INFO : 95% Done

11 May 2020 15:58:22,924 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:22,925 INFO : Inserting SMAD4

11 May 2020 15:58:23,134 INFO : 96% Done

11 May 2020 15:58:23,297 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:23,297 INFO : Inserting STAT3

11 May 2020 15:58:23,301 INFO : 97% Done

11 May 2020 15:58:23,558 INFO : 98% Done

11 May 2020 15:58:23,761 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:23,761 INFO : Done parsing Skyline document.

11 May 2020 15:58:23,763 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:58:23,912 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:58:24,998 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:58:25,190 INFO : Cleaning up temp tables

11 May 2020 15:58:25,497 INFO : Completed import of Skyline document from CPDR-FFPE-ID-384_2020-01-28_11-06-23.sky.zip

11 May 2020 15:58:25,498 INFO : 100% Done

11 May 2020 15:58:25,504 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80187/CPDR-FFPE-ID-384_2020-01-28_11-06-23.sky.zip into the system

11 May 2020 15:58:25,504 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80177/CPDR-FFPE-ID-390_2020-01-28_10-59-33/CPDR-FFPE-ID-390.skyd into the system

11 May 2020 15:58:25,505 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80177/CPDR-FFPE-ID-390_2020-01-28_10-59-33/CPDR-FFPE-ID-390.skyd into the system

11 May 2020 15:58:25,505 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80177/CPDR-FFPE-ID-390_2020-01-28_10-59-33.sky.zip into the system

11 May 2020 15:58:25,508 INFO : Starting import from CPDR-FFPE-ID-390_2020-01-28_10-59-33.sky.zip

11 May 2020 15:58:25,511 INFO : Starting to import Skyline document from CPDR-FFPE-ID-390_2020-01-28_10-59-33.sky.zip

11 May 2020 15:58:25,519 INFO : Expanding CPDR-FFPE-ID-390.skyd

11 May 2020 15:58:25,966 INFO : Expanding CPDR-FFPE-ID-390.sky.view

11 May 2020 15:58:25,967 INFO : Expanding CPDR-FFPE-ID-390.sky

11 May 2020 15:58:26,743 INFO : Inserting TFF3

11 May 2020 15:58:26,752 INFO : 1% Done

11 May 2020 15:58:26,947 INFO : 2% Done

11 May 2020 15:58:27,141 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:27,141 INFO : Inserting AKT1

11 May 2020 15:58:27,145 INFO : 3% Done

11 May 2020 15:58:27,313 INFO : 4% Done

11 May 2020 15:58:27,513 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:27,513 INFO : Inserting AMACR

11 May 2020 15:58:27,517 INFO : 5% Done

11 May 2020 15:58:27,721 INFO : 6% Done

11 May 2020 15:58:27,938 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:27,938 INFO : Inserting ANDR

11 May 2020 15:58:27,942 INFO : 7% Done

11 May 2020 15:58:28,164 INFO : 8% Done

11 May 2020 15:58:28,383 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:28,384 INFO : Inserting ANXA2

11 May 2020 15:58:28,613 INFO : 9% Done

11 May 2020 15:58:28,859 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:28,859 INFO : Inserting AURKA

11 May 2020 15:58:28,863 INFO : 10% Done

11 May 2020 15:58:29,086 INFO : 11% Done

11 May 2020 15:58:29,305 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:29,306 INFO : Inserting BRAF

11 May 2020 15:58:29,310 INFO : 12% Done

11 May 2020 15:58:29,532 INFO : 13% Done

11 May 2020 15:58:29,836 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:29,836 INFO : Inserting CAMKK2

11 May 2020 15:58:29,841 INFO : 14% Done

11 May 2020 15:58:30,060 INFO : 15% Done

11 May 2020 15:58:30,262 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:30,263 INFO : Inserting CCND1

11 May 2020 15:58:30,267 INFO : 16% Done

11 May 2020 15:58:30,635 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:30,636 INFO : Inserting CDN1A

11 May 2020 15:58:30,640 INFO : 17% Done

11 May 2020 15:58:30,849 INFO : 18% Done

11 May 2020 15:58:31,051 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:31,052 INFO : Inserting CRISP3

11 May 2020 15:58:31,056 INFO : 19% Done

11 May 2020 15:58:31,261 INFO : 20% Done

11 May 2020 15:58:31,464 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:31,465 INFO : Inserting DCOR

11 May 2020 15:58:31,469 INFO : 21% Done

11 May 2020 15:58:31,674 INFO : 22% Done

11 May 2020 15:58:31,878 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:31,878 INFO : Inserting EGFR

11 May 2020 15:58:31,882 INFO : 23% Done

11 May 2020 15:58:32,087 INFO : 24% Done

11 May 2020 15:58:32,249 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:32,249 INFO : Inserting EZH2

11 May 2020 15:58:32,253 INFO : 25% Done

11 May 2020 15:58:32,662 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:32,662 INFO : Inserting FGFR1

11 May 2020 15:58:32,871 INFO : 26% Done

11 May 2020 15:58:33,075 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:33,075 INFO : Inserting FOLH1

11 May 2020 15:58:33,079 INFO : 27% Done

11 May 2020 15:58:33,333 INFO : 28% Done

11 May 2020 15:58:33,540 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:33,541 INFO : Inserting HIF1A

11 May 2020 15:58:33,545 INFO : 29% Done

11 May 2020 15:58:33,752 INFO : 30% Done

11 May 2020 15:58:33,956 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:33,956 INFO : Inserting HPN

11 May 2020 15:58:33,961 INFO : 31% Done

11 May 2020 15:58:34,167 INFO : 32% Done

11 May 2020 15:58:34,376 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:34,376 INFO : Inserting HSPB1

11 May 2020 15:58:34,381 INFO : 33% Done

11 May 2020 15:58:34,589 INFO : 34% Done

11 May 2020 15:58:34,792 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:34,793 INFO : Inserting HXC6

11 May 2020 15:58:34,797 INFO : 35% Done

11 May 2020 15:58:35,004 INFO : 36% Done

11 May 2020 15:58:35,208 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:35,208 INFO : Inserting KLK11

11 May 2020 15:58:35,421 INFO : 37% Done

11 May 2020 15:58:35,625 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:35,625 INFO : Inserting KLK2

11 May 2020 15:58:35,630 INFO : 38% Done

11 May 2020 15:58:35,837 INFO : 39% Done

11 May 2020 15:58:36,042 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:36,042 INFO : Inserting MMP2

11 May 2020 15:58:36,046 INFO : 40% Done

11 May 2020 15:58:36,253 INFO : 41% Done

11 May 2020 15:58:36,418 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:36,418 INFO : Inserting MMP9

11 May 2020 15:58:36,422 INFO : 42% Done

11 May 2020 15:58:36,629 INFO : 43% Done

11 May 2020 15:58:36,834 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:36,834 INFO : Inserting MUC1

11 May 2020 15:58:36,838 INFO : 44% Done

11 May 2020 15:58:37,046 INFO : 45% Done

11 May 2020 15:58:37,263 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:37,263 INFO : Inserting MUC6

11 May 2020 15:58:37,268 INFO : 46% Done

11 May 2020 15:58:37,689 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:37,689 INFO : Inserting MYC

11 May 2020 15:58:37,694 INFO : 47% Done

11 May 2020 15:58:37,901 INFO : 48% Done

11 May 2020 15:58:38,106 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:38,107 INFO : Inserting MYCN

11 May 2020 15:58:38,111 INFO : 49% Done

11 May 2020 15:58:38,317 INFO : 50% Done

11 May 2020 15:58:38,527 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:38,527 INFO : Inserting MYO6

11 May 2020 15:58:38,532 INFO : 51% Done

11 May 2020 15:58:38,728 INFO : 52% Done

11 May 2020 15:58:38,920 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:38,920 INFO : Inserting NCOA2

11 May 2020 15:58:38,925 INFO : 53% Done

11 May 2020 15:58:39,125 INFO : 54% Done

11 May 2020 15:58:39,328 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:39,329 INFO : Inserting NPY

11 May 2020 15:58:39,333 INFO : 55% Done

11 May 2020 15:58:39,542 INFO : 56% Done

11 May 2020 15:58:39,718 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:39,718 INFO : Inserting O51E2

11 May 2020 15:58:39,872 INFO : 57% Done

11 May 2020 15:58:40,052 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:40,052 INFO : Inserting OSTP

11 May 2020 15:58:40,056 INFO : 58% Done

11 May 2020 15:58:40,266 INFO : 59% Done

11 May 2020 15:58:40,472 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:40,472 INFO : Inserting P53

11 May 2020 15:58:40,476 INFO : 60% Done

11 May 2020 15:58:40,703 INFO : 61% Done

11 May 2020 15:58:40,913 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:40,913 INFO : Inserting PAFA

11 May 2020 15:58:40,917 INFO : 62% Done

11 May 2020 15:58:41,126 INFO : 63% Done

11 May 2020 15:58:41,333 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:41,333 INFO : Inserting PGFRB

11 May 2020 15:58:41,561 INFO : 64% Done

11 May 2020 15:58:41,880 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:41,880 INFO : Inserting PK3CA

11 May 2020 15:58:41,884 INFO : 65% Done

11 May 2020 15:58:42,092 INFO : 66% Done

11 May 2020 15:58:42,325 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:42,325 INFO : Inserting RAF1

11 May 2020 15:58:42,329 INFO : 67% Done

11 May 2020 15:58:42,540 INFO : 68% Done

11 May 2020 15:58:42,778 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:42,778 INFO : Inserting SERPINI1

11 May 2020 15:58:42,782 INFO : 69% Done

11 May 2020 15:58:42,994 INFO : 70% Done

11 May 2020 15:58:43,208 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:43,209 INFO : Inserting SPINK1

11 May 2020 15:58:43,213 INFO : 71% Done

11 May 2020 15:58:43,428 INFO : 72% Done

11 May 2020 15:58:43,634 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:43,634 INFO : Inserting SPRC

11 May 2020 15:58:43,638 INFO : 73% Done

11 May 2020 15:58:44,047 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:44,047 INFO : Inserting TGFB1

11 May 2020 15:58:44,051 INFO : 74% Done

11 May 2020 15:58:44,484 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:44,484 INFO : Inserting TMPS2

11 May 2020 15:58:44,488 INFO : 75% Done

11 May 2020 15:58:44,697 INFO : 76% Done

11 May 2020 15:58:44,903 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:44,903 INFO : Inserting TPM2

11 May 2020 15:58:44,908 INFO : 77% Done

11 May 2020 15:58:45,119 INFO : 78% Done

11 May 2020 15:58:45,324 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:45,324 INFO : Inserting TWST1

11 May 2020 15:58:45,328 INFO : 79% Done

11 May 2020 15:58:45,543 INFO : 80% Done

11 May 2020 15:58:45,755 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:45,755 INFO : Inserting VEGFA

11 May 2020 15:58:45,806 INFO : 81% Done

11 May 2020 15:58:46,018 INFO : 82% Done

11 May 2020 15:58:46,225 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:46,225 INFO : Inserting PSA

11 May 2020 15:58:46,230 INFO : 83% Done

11 May 2020 15:58:46,643 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:46,643 INFO : Inserting ERG_pan

11 May 2020 15:58:46,647 INFO : 84% Done

11 May 2020 15:58:46,857 INFO : 85% Done

11 May 2020 15:58:47,066 INFO : 86% Done

11 May 2020 15:58:47,281 INFO : 87% Done

11 May 2020 15:58:47,493 INFO : 88% Done

11 May 2020 15:58:47,702 INFO : 89% Done

11 May 2020 15:58:47,909 INFO : 90% Done

11 May 2020 15:58:48,117 DEBUG: Total peptides inserted: 7

11 May 2020 15:58:48,117 INFO : Inserting ETV1

11 May 2020 15:58:48,121 INFO : 91% Done

11 May 2020 15:58:48,329 INFO : 92% Done

11 May 2020 15:58:48,539 INFO : 93% Done

11 May 2020 15:58:48,745 DEBUG: Total peptides inserted: 3

11 May 2020 15:58:48,745 INFO : Inserting ERG8

11 May 2020 15:58:48,749 INFO : 94% Done

11 May 2020 15:58:48,959 INFO : 95% Done

11 May 2020 15:58:49,164 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:49,164 INFO : Inserting SMAD4

11 May 2020 15:58:49,376 INFO : 96% Done

11 May 2020 15:58:49,541 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:49,541 INFO : Inserting STAT3

11 May 2020 15:58:49,545 INFO : 97% Done

11 May 2020 15:58:49,823 INFO : 98% Done

11 May 2020 15:58:50,027 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:50,027 INFO : Done parsing Skyline document.

11 May 2020 15:58:50,029 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:58:50,176 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:58:51,094 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:58:51,311 INFO : Cleaning up temp tables

11 May 2020 15:58:51,706 INFO : Completed import of Skyline document from CPDR-FFPE-ID-390_2020-01-28_10-59-33.sky.zip

11 May 2020 15:58:51,708 INFO : 100% Done

11 May 2020 15:58:51,720 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80177/CPDR-FFPE-ID-390_2020-01-28_10-59-33.sky.zip into the system

11 May 2020 15:58:51,720 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80176/CPDR-FFPE-ID-353_2020-01-28_10-58-54/CPDR-FFPE-ID-353.skyd into the system

11 May 2020 15:58:51,722 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80176/CPDR-FFPE-ID-353_2020-01-28_10-58-54/CPDR-FFPE-ID-353.skyd into the system

11 May 2020 15:58:51,722 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80176/CPDR-FFPE-ID-353_2020-01-28_10-58-54.sky.zip into the system

11 May 2020 15:58:51,727 INFO : Starting import from CPDR-FFPE-ID-353_2020-01-28_10-58-54.sky.zip

11 May 2020 15:58:51,734 INFO : Starting to import Skyline document from CPDR-FFPE-ID-353_2020-01-28_10-58-54.sky.zip

11 May 2020 15:58:51,753 INFO : Expanding CPDR-FFPE-ID-353.skyd

11 May 2020 15:58:52,187 INFO : Expanding CPDR-FFPE-ID-353.sky.view

11 May 2020 15:58:52,188 INFO : Expanding CPDR-FFPE-ID-353.sky

11 May 2020 15:58:52,723 INFO : Inserting TFF3

11 May 2020 15:58:52,729 INFO : 1% Done

11 May 2020 15:58:52,924 INFO : 2% Done

11 May 2020 15:58:53,113 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:53,113 INFO : Inserting AKT1

11 May 2020 15:58:53,117 INFO : 3% Done

11 May 2020 15:58:53,281 INFO : 4% Done

11 May 2020 15:58:53,481 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:53,481 INFO : Inserting AMACR

11 May 2020 15:58:53,485 INFO : 5% Done

11 May 2020 15:58:53,692 INFO : 6% Done

11 May 2020 15:58:53,902 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:53,903 INFO : Inserting ANDR

11 May 2020 15:58:53,907 INFO : 7% Done

11 May 2020 15:58:54,168 INFO : 8% Done

11 May 2020 15:58:54,373 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:54,373 INFO : Inserting ANXA2

11 May 2020 15:58:54,585 INFO : 9% Done

11 May 2020 15:58:54,790 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:54,791 INFO : Inserting AURKA

11 May 2020 15:58:54,795 INFO : 10% Done

11 May 2020 15:58:55,005 INFO : 11% Done

11 May 2020 15:58:55,213 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:55,213 INFO : Inserting BRAF

11 May 2020 15:58:55,217 INFO : 12% Done

11 May 2020 15:58:55,428 INFO : 13% Done

11 May 2020 15:58:55,635 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:55,635 INFO : Inserting CAMKK2

11 May 2020 15:58:55,639 INFO : 14% Done

11 May 2020 15:58:55,923 INFO : 15% Done

11 May 2020 15:58:56,116 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:56,116 INFO : Inserting CCND1

11 May 2020 15:58:56,120 INFO : 16% Done

11 May 2020 15:58:56,451 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:56,452 INFO : Inserting CDN1A

11 May 2020 15:58:56,456 INFO : 17% Done

11 May 2020 15:58:56,657 INFO : 18% Done

11 May 2020 15:58:56,859 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:56,859 INFO : Inserting CRISP3

11 May 2020 15:58:56,863 INFO : 19% Done

11 May 2020 15:58:57,071 INFO : 20% Done

11 May 2020 15:58:57,297 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:57,298 INFO : Inserting DCOR

11 May 2020 15:58:57,302 INFO : 21% Done

11 May 2020 15:58:57,522 INFO : 22% Done

11 May 2020 15:58:57,746 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:57,747 INFO : Inserting EGFR

11 May 2020 15:58:57,751 INFO : 23% Done

11 May 2020 15:58:57,974 INFO : 24% Done

11 May 2020 15:58:58,153 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:58,154 INFO : Inserting EZH2

11 May 2020 15:58:58,158 INFO : 25% Done

11 May 2020 15:58:58,576 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:58,576 INFO : Inserting FGFR1

11 May 2020 15:58:58,788 INFO : 26% Done

11 May 2020 15:58:58,991 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:58,991 INFO : Inserting FOLH1

11 May 2020 15:58:58,995 INFO : 27% Done

11 May 2020 15:58:59,217 INFO : 28% Done

11 May 2020 15:58:59,418 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:59,419 INFO : Inserting HIF1A

11 May 2020 15:58:59,423 INFO : 29% Done

11 May 2020 15:58:59,627 INFO : 30% Done

11 May 2020 15:58:59,828 DEBUG: Total peptides inserted: 2

11 May 2020 15:58:59,828 INFO : Inserting HPN

11 May 2020 15:58:59,832 INFO : 31% Done

11 May 2020 15:59:00,034 INFO : 32% Done

11 May 2020 15:59:00,301 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:00,301 INFO : Inserting HSPB1

11 May 2020 15:59:00,305 INFO : 33% Done

11 May 2020 15:59:00,515 INFO : 34% Done

11 May 2020 15:59:00,724 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:00,724 INFO : Inserting HXC6

11 May 2020 15:59:00,728 INFO : 35% Done

11 May 2020 15:59:00,938 INFO : 36% Done

11 May 2020 15:59:01,141 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:01,141 INFO : Inserting KLK11

11 May 2020 15:59:01,375 INFO : 37% Done

11 May 2020 15:59:01,586 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:01,586 INFO : Inserting KLK2

11 May 2020 15:59:01,590 INFO : 38% Done

11 May 2020 15:59:01,813 INFO : 39% Done

11 May 2020 15:59:02,019 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:02,019 INFO : Inserting MMP2

11 May 2020 15:59:02,023 INFO : 40% Done

11 May 2020 15:59:02,230 INFO : 41% Done

11 May 2020 15:59:02,395 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:02,395 INFO : Inserting MMP9

11 May 2020 15:59:02,399 INFO : 42% Done

11 May 2020 15:59:02,604 INFO : 43% Done

11 May 2020 15:59:02,803 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:02,803 INFO : Inserting MUC1

11 May 2020 15:59:02,807 INFO : 44% Done

11 May 2020 15:59:03,009 INFO : 45% Done

11 May 2020 15:59:03,213 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:03,214 INFO : Inserting MUC6

11 May 2020 15:59:03,218 INFO : 46% Done

11 May 2020 15:59:03,623 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:03,623 INFO : Inserting MYC

11 May 2020 15:59:03,628 INFO : 47% Done

11 May 2020 15:59:03,832 INFO : 48% Done

11 May 2020 15:59:04,034 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:04,034 INFO : Inserting MYCN

11 May 2020 15:59:04,038 INFO : 49% Done

11 May 2020 15:59:04,242 INFO : 50% Done

11 May 2020 15:59:04,444 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:04,445 INFO : Inserting MYO6

11 May 2020 15:59:04,449 INFO : 51% Done

11 May 2020 15:59:04,655 INFO : 52% Done

11 May 2020 15:59:04,856 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:04,856 INFO : Inserting NCOA2

11 May 2020 15:59:04,861 INFO : 53% Done

11 May 2020 15:59:05,065 INFO : 54% Done

11 May 2020 15:59:05,267 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:05,267 INFO : Inserting NPY

11 May 2020 15:59:05,271 INFO : 55% Done

11 May 2020 15:59:05,477 INFO : 56% Done

11 May 2020 15:59:05,699 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:05,699 INFO : Inserting O51E2

11 May 2020 15:59:05,868 INFO : 57% Done

11 May 2020 15:59:06,070 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:06,070 INFO : Inserting OSTP

11 May 2020 15:59:06,074 INFO : 58% Done

11 May 2020 15:59:06,283 INFO : 59% Done

11 May 2020 15:59:06,488 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:06,488 INFO : Inserting P53

11 May 2020 15:59:06,492 INFO : 60% Done

11 May 2020 15:59:06,701 INFO : 61% Done

11 May 2020 15:59:06,964 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:06,964 INFO : Inserting PAFA

11 May 2020 15:59:06,968 INFO : 62% Done

11 May 2020 15:59:07,186 INFO : 63% Done

11 May 2020 15:59:07,383 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:07,383 INFO : Inserting PGFRB

11 May 2020 15:59:07,559 INFO : 64% Done

11 May 2020 15:59:07,766 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:07,766 INFO : Inserting PK3CA

11 May 2020 15:59:07,770 INFO : 65% Done

11 May 2020 15:59:07,976 INFO : 66% Done

11 May 2020 15:59:08,177 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:08,178 INFO : Inserting RAF1

11 May 2020 15:59:08,182 INFO : 67% Done

11 May 2020 15:59:08,436 INFO : 68% Done

11 May 2020 15:59:08,612 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:08,612 INFO : Inserting SERPINI1

11 May 2020 15:59:08,617 INFO : 69% Done

11 May 2020 15:59:08,827 INFO : 70% Done

11 May 2020 15:59:09,035 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:09,035 INFO : Inserting SPINK1

11 May 2020 15:59:09,039 INFO : 71% Done

11 May 2020 15:59:09,247 INFO : 72% Done

11 May 2020 15:59:09,463 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:09,463 INFO : Inserting SPRC

11 May 2020 15:59:09,468 INFO : 73% Done

11 May 2020 15:59:09,873 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:09,873 INFO : Inserting TGFB1

11 May 2020 15:59:09,878 INFO : 74% Done

11 May 2020 15:59:10,280 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:10,280 INFO : Inserting TMPS2

11 May 2020 15:59:10,284 INFO : 75% Done

11 May 2020 15:59:10,487 INFO : 76% Done

11 May 2020 15:59:10,688 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:10,688 INFO : Inserting TPM2

11 May 2020 15:59:10,692 INFO : 77% Done

11 May 2020 15:59:10,929 INFO : 78% Done

11 May 2020 15:59:11,136 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:11,137 INFO : Inserting TWST1

11 May 2020 15:59:11,141 INFO : 79% Done

11 May 2020 15:59:11,354 INFO : 80% Done

11 May 2020 15:59:11,560 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:11,560 INFO : Inserting VEGFA

11 May 2020 15:59:11,564 INFO : 81% Done

11 May 2020 15:59:11,774 INFO : 82% Done

11 May 2020 15:59:11,980 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:11,980 INFO : Inserting PSA

11 May 2020 15:59:11,984 INFO : 83% Done

11 May 2020 15:59:12,389 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:12,389 INFO : Inserting ERG_pan

11 May 2020 15:59:12,393 INFO : 84% Done

11 May 2020 15:59:12,599 INFO : 85% Done

11 May 2020 15:59:12,832 INFO : 86% Done

11 May 2020 15:59:13,065 INFO : 87% Done

11 May 2020 15:59:13,275 INFO : 88% Done

11 May 2020 15:59:13,484 INFO : 89% Done

11 May 2020 15:59:13,698 INFO : 90% Done

11 May 2020 15:59:13,903 DEBUG: Total peptides inserted: 7

11 May 2020 15:59:13,903 INFO : Inserting ETV1

11 May 2020 15:59:13,908 INFO : 91% Done

11 May 2020 15:59:14,113 INFO : 92% Done

11 May 2020 15:59:14,302 INFO : 93% Done

11 May 2020 15:59:14,502 DEBUG: Total peptides inserted: 3

11 May 2020 15:59:14,502 INFO : Inserting ERG8

11 May 2020 15:59:14,506 INFO : 94% Done

11 May 2020 15:59:14,716 INFO : 95% Done

11 May 2020 15:59:14,923 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:14,923 INFO : Inserting SMAD4

11 May 2020 15:59:15,140 INFO : 96% Done

11 May 2020 15:59:15,306 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:15,306 INFO : Inserting STAT3

11 May 2020 15:59:15,310 INFO : 97% Done

11 May 2020 15:59:15,518 INFO : 98% Done

11 May 2020 15:59:15,723 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:15,724 INFO : Done parsing Skyline document.

11 May 2020 15:59:15,726 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:59:15,874 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:59:17,200 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:59:17,605 INFO : Cleaning up temp tables

11 May 2020 15:59:17,636 INFO : Completed import of Skyline document from CPDR-FFPE-ID-353_2020-01-28_10-58-54.sky.zip

11 May 2020 15:59:17,638 INFO : 100% Done

11 May 2020 15:59:17,648 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80176/CPDR-FFPE-ID-353_2020-01-28_10-58-54.sky.zip into the system

11 May 2020 15:59:17,648 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80173/CPDR-FFPE-ID-116_2020-01-28_10-56-59/CPDR-FFPE-ID-116.skyd into the system

11 May 2020 15:59:17,649 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80173/CPDR-FFPE-ID-116_2020-01-28_10-56-59/CPDR-FFPE-ID-116.skyd into the system

11 May 2020 15:59:17,649 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80173/CPDR-FFPE-ID-116_2020-01-28_10-56-59.sky.zip into the system

11 May 2020 15:59:17,654 INFO : Starting import from CPDR-FFPE-ID-116_2020-01-28_10-56-59.sky.zip

11 May 2020 15:59:17,659 INFO : Starting to import Skyline document from CPDR-FFPE-ID-116_2020-01-28_10-56-59.sky.zip

11 May 2020 15:59:17,677 INFO : Expanding CPDR-FFPE-ID-116.skyd

11 May 2020 15:59:18,112 INFO : Expanding CPDR-FFPE-ID-116.sky.view

11 May 2020 15:59:18,113 INFO : Expanding CPDR-FFPE-ID-116.sky

11 May 2020 15:59:18,692 INFO : Inserting TFF3

11 May 2020 15:59:18,699 INFO : 1% Done

11 May 2020 15:59:18,893 INFO : 2% Done

11 May 2020 15:59:19,088 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:19,088 INFO : Inserting AKT1

11 May 2020 15:59:19,092 INFO : 3% Done

11 May 2020 15:59:19,262 INFO : 4% Done

11 May 2020 15:59:19,465 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:19,465 INFO : Inserting AMACR

11 May 2020 15:59:19,469 INFO : 5% Done

11 May 2020 15:59:19,676 INFO : 6% Done

11 May 2020 15:59:19,879 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:19,879 INFO : Inserting ANDR

11 May 2020 15:59:19,884 INFO : 7% Done

11 May 2020 15:59:20,100 INFO : 8% Done

11 May 2020 15:59:20,353 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:20,353 INFO : Inserting ANXA2

11 May 2020 15:59:20,567 INFO : 9% Done

11 May 2020 15:59:20,772 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:20,772 INFO : Inserting AURKA

11 May 2020 15:59:20,777 INFO : 10% Done

11 May 2020 15:59:20,985 INFO : 11% Done

11 May 2020 15:59:21,189 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:21,190 INFO : Inserting BRAF

11 May 2020 15:59:21,194 INFO : 12% Done

11 May 2020 15:59:21,401 INFO : 13% Done

11 May 2020 15:59:21,604 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:21,604 INFO : Inserting CAMKK2

11 May 2020 15:59:21,609 INFO : 14% Done

11 May 2020 15:59:21,818 INFO : 15% Done

11 May 2020 15:59:22,023 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:22,023 INFO : Inserting CCND1

11 May 2020 15:59:22,027 INFO : 16% Done

11 May 2020 15:59:22,399 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:22,399 INFO : Inserting CDN1A

11 May 2020 15:59:22,403 INFO : 17% Done

11 May 2020 15:59:22,612 INFO : 18% Done

11 May 2020 15:59:22,817 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:22,817 INFO : Inserting CRISP3

11 May 2020 15:59:22,821 INFO : 19% Done

11 May 2020 15:59:23,030 INFO : 20% Done

11 May 2020 15:59:23,239 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:23,239 INFO : Inserting DCOR

11 May 2020 15:59:23,243 INFO : 21% Done

11 May 2020 15:59:23,464 INFO : 22% Done

11 May 2020 15:59:23,669 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:23,669 INFO : Inserting EGFR

11 May 2020 15:59:23,673 INFO : 23% Done

11 May 2020 15:59:23,880 INFO : 24% Done

11 May 2020 15:59:24,041 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:24,041 INFO : Inserting EZH2

11 May 2020 15:59:24,045 INFO : 25% Done

11 May 2020 15:59:24,456 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:24,457 INFO : Inserting FGFR1

11 May 2020 15:59:24,666 INFO : 26% Done

11 May 2020 15:59:24,868 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:24,868 INFO : Inserting FOLH1

11 May 2020 15:59:24,872 INFO : 27% Done

11 May 2020 15:59:25,078 INFO : 28% Done

11 May 2020 15:59:25,280 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:25,281 INFO : Inserting HIF1A

11 May 2020 15:59:25,285 INFO : 29% Done

11 May 2020 15:59:25,490 INFO : 30% Done

11 May 2020 15:59:25,693 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:25,693 INFO : Inserting HPN

11 May 2020 15:59:25,697 INFO : 31% Done

11 May 2020 15:59:25,905 INFO : 32% Done

11 May 2020 15:59:26,111 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:26,111 INFO : Inserting HSPB1

11 May 2020 15:59:26,115 INFO : 33% Done

11 May 2020 15:59:26,322 INFO : 34% Done

11 May 2020 15:59:26,531 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:26,531 INFO : Inserting HXC6

11 May 2020 15:59:26,536 INFO : 35% Done

11 May 2020 15:59:26,742 INFO : 36% Done

11 May 2020 15:59:26,946 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:26,946 INFO : Inserting KLK11

11 May 2020 15:59:27,158 INFO : 37% Done

11 May 2020 15:59:27,365 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:27,365 INFO : Inserting KLK2

11 May 2020 15:59:27,369 INFO : 38% Done

11 May 2020 15:59:27,578 INFO : 39% Done

11 May 2020 15:59:27,805 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:27,805 INFO : Inserting MMP2

11 May 2020 15:59:27,809 INFO : 40% Done

11 May 2020 15:59:28,016 INFO : 41% Done

11 May 2020 15:59:28,182 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:28,183 INFO : Inserting MMP9

11 May 2020 15:59:28,187 INFO : 42% Done

11 May 2020 15:59:28,397 INFO : 43% Done

11 May 2020 15:59:28,604 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:28,604 INFO : Inserting MUC1

11 May 2020 15:59:28,608 INFO : 44% Done

11 May 2020 15:59:28,868 INFO : 45% Done

11 May 2020 15:59:29,072 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:29,072 INFO : Inserting MUC6

11 May 2020 15:59:29,282 INFO : 46% Done

11 May 2020 15:59:29,486 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:29,486 INFO : Inserting MYC

11 May 2020 15:59:29,490 INFO : 47% Done

11 May 2020 15:59:29,639 INFO : 48% Done

11 May 2020 15:59:29,775 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:29,775 INFO : Inserting MYCN

11 May 2020 15:59:29,779 INFO : 49% Done

11 May 2020 15:59:29,917 INFO : 50% Done

11 May 2020 15:59:30,138 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:30,138 INFO : Inserting MYO6

11 May 2020 15:59:30,142 INFO : 51% Done

11 May 2020 15:59:30,349 INFO : 52% Done

11 May 2020 15:59:30,553 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:30,554 INFO : Inserting NCOA2

11 May 2020 15:59:30,558 INFO : 53% Done

11 May 2020 15:59:30,764 INFO : 54% Done

11 May 2020 15:59:30,968 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:30,969 INFO : Inserting NPY

11 May 2020 15:59:30,973 INFO : 55% Done

11 May 2020 15:59:31,180 INFO : 56% Done

11 May 2020 15:59:31,383 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:31,384 INFO : Inserting O51E2

11 May 2020 15:59:31,551 INFO : 57% Done

11 May 2020 15:59:31,753 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:31,753 INFO : Inserting OSTP

11 May 2020 15:59:31,757 INFO : 58% Done

11 May 2020 15:59:31,964 INFO : 59% Done

11 May 2020 15:59:32,165 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:32,165 INFO : Inserting P53

11 May 2020 15:59:32,169 INFO : 60% Done

11 May 2020 15:59:32,375 INFO : 61% Done

11 May 2020 15:59:32,587 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:32,587 INFO : Inserting PAFA

11 May 2020 15:59:32,591 INFO : 62% Done

11 May 2020 15:59:32,881 INFO : 63% Done

11 May 2020 15:59:33,085 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:33,085 INFO : Inserting PGFRB

11 May 2020 15:59:33,262 INFO : 64% Done

11 May 2020 15:59:33,481 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:33,481 INFO : Inserting PK3CA

11 May 2020 15:59:33,485 INFO : 65% Done

11 May 2020 15:59:33,709 INFO : 66% Done

11 May 2020 15:59:33,930 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:33,930 INFO : Inserting RAF1

11 May 2020 15:59:33,934 INFO : 67% Done

11 May 2020 15:59:34,145 INFO : 68% Done

11 May 2020 15:59:34,306 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:34,306 INFO : Inserting SERPINI1

11 May 2020 15:59:34,310 INFO : 69% Done

11 May 2020 15:59:34,517 INFO : 70% Done

11 May 2020 15:59:34,720 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:34,720 INFO : Inserting SPINK1

11 May 2020 15:59:34,724 INFO : 71% Done

11 May 2020 15:59:34,930 INFO : 72% Done

11 May 2020 15:59:35,131 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:35,131 INFO : Inserting SPRC

11 May 2020 15:59:35,340 INFO : 73% Done

11 May 2020 15:59:35,543 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:35,544 INFO : Inserting TGFB1

11 May 2020 15:59:35,548 INFO : 74% Done

11 May 2020 15:59:36,041 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:36,041 INFO : Inserting TMPS2

11 May 2020 15:59:36,045 INFO : 75% Done

11 May 2020 15:59:36,255 INFO : 76% Done

11 May 2020 15:59:36,462 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:36,462 INFO : Inserting TPM2

11 May 2020 15:59:36,467 INFO : 77% Done

11 May 2020 15:59:36,676 INFO : 78% Done

11 May 2020 15:59:36,892 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:36,893 INFO : Inserting TWST1

11 May 2020 15:59:36,897 INFO : 79% Done

11 May 2020 15:59:37,107 INFO : 80% Done

11 May 2020 15:59:37,322 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:37,322 INFO : Inserting VEGFA

11 May 2020 15:59:37,327 INFO : 81% Done

11 May 2020 15:59:37,554 INFO : 82% Done

11 May 2020 15:59:37,765 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:37,765 INFO : Inserting PSA

11 May 2020 15:59:37,770 INFO : 83% Done

11 May 2020 15:59:38,186 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:38,186 INFO : Inserting ERG_pan

11 May 2020 15:59:38,190 INFO : 84% Done

11 May 2020 15:59:38,483 INFO : 85% Done

11 May 2020 15:59:38,727 INFO : 86% Done

11 May 2020 15:59:38,969 INFO : 87% Done

11 May 2020 15:59:39,204 INFO : 88% Done

11 May 2020 15:59:39,414 INFO : 89% Done

11 May 2020 15:59:39,622 INFO : 90% Done

11 May 2020 15:59:39,826 DEBUG: Total peptides inserted: 7

11 May 2020 15:59:39,826 INFO : Inserting ETV1

11 May 2020 15:59:39,830 INFO : 91% Done

11 May 2020 15:59:40,037 INFO : 92% Done

11 May 2020 15:59:40,244 INFO : 93% Done

11 May 2020 15:59:40,449 DEBUG: Total peptides inserted: 3

11 May 2020 15:59:40,449 INFO : Inserting ERG8

11 May 2020 15:59:40,453 INFO : 94% Done

11 May 2020 15:59:40,662 INFO : 95% Done

11 May 2020 15:59:40,867 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:40,867 INFO : Inserting SMAD4

11 May 2020 15:59:40,872 INFO : 96% Done

11 May 2020 15:59:41,249 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:41,250 INFO : Inserting STAT3

11 May 2020 15:59:41,254 INFO : 97% Done

11 May 2020 15:59:41,463 INFO : 98% Done

11 May 2020 15:59:41,683 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:41,683 INFO : Done parsing Skyline document.

11 May 2020 15:59:41,686 INFO : Creating and populating temp tables for Proportion values

11 May 2020 15:59:41,853 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 15:59:42,671 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 15:59:42,885 INFO : Cleaning up temp tables

11 May 2020 15:59:43,257 INFO : Completed import of Skyline document from CPDR-FFPE-ID-116_2020-01-28_10-56-59.sky.zip

11 May 2020 15:59:43,258 INFO : 100% Done

11 May 2020 15:59:43,266 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80173/CPDR-FFPE-ID-116_2020-01-28_10-56-59.sky.zip into the system

11 May 2020 15:59:43,267 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80172/CPDR-FFPE-ID-40_2020-01-28_10-56-22/CPDR-FFPE-ID-40.skyd into the system

11 May 2020 15:59:43,268 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80172/CPDR-FFPE-ID-40_2020-01-28_10-56-22/CPDR-FFPE-ID-40.skyd into the system

11 May 2020 15:59:43,269 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80172/CPDR-FFPE-ID-40_2020-01-28_10-56-22.sky.zip into the system

11 May 2020 15:59:43,272 INFO : Starting import from CPDR-FFPE-ID-40_2020-01-28_10-56-22.sky.zip

11 May 2020 15:59:43,275 INFO : Starting to import Skyline document from CPDR-FFPE-ID-40_2020-01-28_10-56-22.sky.zip

11 May 2020 15:59:43,283 INFO : Expanding CPDR-FFPE-ID-40.skyd

11 May 2020 15:59:43,467 INFO : Expanding CPDR-FFPE-ID-40.sky.view

11 May 2020 15:59:43,467 INFO : Expanding CPDR-FFPE-ID-40.sky

11 May 2020 15:59:44,117 INFO : Inserting TFF3

11 May 2020 15:59:44,126 INFO : 1% Done

11 May 2020 15:59:44,339 INFO : 2% Done

11 May 2020 15:59:44,541 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:44,541 INFO : Inserting AKT1

11 May 2020 15:59:44,545 INFO : 3% Done

11 May 2020 15:59:44,709 INFO : 4% Done

11 May 2020 15:59:44,982 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:44,982 INFO : Inserting AMACR

11 May 2020 15:59:44,987 INFO : 5% Done

11 May 2020 15:59:45,210 INFO : 6% Done

11 May 2020 15:59:45,438 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:45,439 INFO : Inserting ANDR

11 May 2020 15:59:45,443 INFO : 7% Done

11 May 2020 15:59:45,672 INFO : 8% Done

11 May 2020 15:59:45,904 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:45,904 INFO : Inserting ANXA2

11 May 2020 15:59:46,139 INFO : 9% Done

11 May 2020 15:59:46,364 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:46,365 INFO : Inserting AURKA

11 May 2020 15:59:46,369 INFO : 10% Done

11 May 2020 15:59:46,597 INFO : 11% Done

11 May 2020 15:59:46,822 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:46,822 INFO : Inserting BRAF

11 May 2020 15:59:46,827 INFO : 12% Done

11 May 2020 15:59:47,055 INFO : 13% Done

11 May 2020 15:59:47,282 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:47,282 INFO : Inserting CAMKK2

11 May 2020 15:59:47,286 INFO : 14% Done

11 May 2020 15:59:47,518 INFO : 15% Done

11 May 2020 15:59:47,798 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:47,798 INFO : Inserting CCND1

11 May 2020 15:59:47,802 INFO : 16% Done

11 May 2020 15:59:48,012 INFO : 17% Done

11 May 2020 15:59:48,178 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:48,178 INFO : Inserting CDN1A

11 May 2020 15:59:48,390 INFO : 18% Done

11 May 2020 15:59:48,591 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:48,592 INFO : Inserting CRISP3

11 May 2020 15:59:48,596 INFO : 19% Done

11 May 2020 15:59:48,800 INFO : 20% Done

11 May 2020 15:59:49,008 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:49,008 INFO : Inserting DCOR

11 May 2020 15:59:49,013 INFO : 21% Done

11 May 2020 15:59:49,220 INFO : 22% Done

11 May 2020 15:59:49,430 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:49,430 INFO : Inserting EGFR

11 May 2020 15:59:49,435 INFO : 23% Done

11 May 2020 15:59:49,642 INFO : 24% Done

11 May 2020 15:59:49,807 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:49,807 INFO : Inserting EZH2

11 May 2020 15:59:49,811 INFO : 25% Done

11 May 2020 15:59:50,221 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:50,221 INFO : Inserting FGFR1

11 May 2020 15:59:50,430 INFO : 26% Done

11 May 2020 15:59:50,633 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:50,633 INFO : Inserting FOLH1

11 May 2020 15:59:50,637 INFO : 27% Done

11 May 2020 15:59:50,844 INFO : 28% Done

11 May 2020 15:59:51,046 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:51,047 INFO : Inserting HIF1A

11 May 2020 15:59:51,051 INFO : 29% Done

11 May 2020 15:59:51,256 INFO : 30% Done

11 May 2020 15:59:51,461 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:51,462 INFO : Inserting HPN

11 May 2020 15:59:51,466 INFO : 31% Done

11 May 2020 15:59:51,673 INFO : 32% Done

11 May 2020 15:59:51,877 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:51,877 INFO : Inserting HSPB1

11 May 2020 15:59:51,881 INFO : 33% Done

11 May 2020 15:59:52,087 INFO : 34% Done

11 May 2020 15:59:52,289 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:52,289 INFO : Inserting HXC6

11 May 2020 15:59:52,293 INFO : 35% Done

11 May 2020 15:59:52,498 INFO : 36% Done

11 May 2020 15:59:52,701 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:52,701 INFO : Inserting KLK11

11 May 2020 15:59:52,705 INFO : 37% Done

11 May 2020 15:59:53,118 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:53,118 INFO : Inserting KLK2

11 May 2020 15:59:53,122 INFO : 38% Done

11 May 2020 15:59:53,328 INFO : 39% Done

11 May 2020 15:59:53,534 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:53,535 INFO : Inserting MMP2

11 May 2020 15:59:53,539 INFO : 40% Done

11 May 2020 15:59:53,753 INFO : 41% Done

11 May 2020 15:59:53,927 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:53,927 INFO : Inserting MMP9

11 May 2020 15:59:53,931 INFO : 42% Done

11 May 2020 15:59:54,221 INFO : 43% Done

11 May 2020 15:59:54,424 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:54,424 INFO : Inserting MUC1

11 May 2020 15:59:54,428 INFO : 44% Done

11 May 2020 15:59:54,643 INFO : 45% Done

11 May 2020 15:59:54,848 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:54,849 INFO : Inserting MUC6

11 May 2020 15:59:54,853 INFO : 46% Done

11 May 2020 15:59:55,263 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:55,263 INFO : Inserting MYC

11 May 2020 15:59:55,268 INFO : 47% Done

11 May 2020 15:59:55,474 INFO : 48% Done

11 May 2020 15:59:55,679 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:55,679 INFO : Inserting MYCN

11 May 2020 15:59:55,683 INFO : 49% Done

11 May 2020 15:59:55,888 INFO : 50% Done

11 May 2020 15:59:56,091 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:56,091 INFO : Inserting MYO6

11 May 2020 15:59:56,095 INFO : 51% Done

11 May 2020 15:59:56,301 INFO : 52% Done

11 May 2020 15:59:56,504 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:56,504 INFO : Inserting NCOA2

11 May 2020 15:59:56,508 INFO : 53% Done

11 May 2020 15:59:56,718 INFO : 54% Done

11 May 2020 15:59:56,973 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:56,973 INFO : Inserting NPY

11 May 2020 15:59:56,977 INFO : 55% Done

11 May 2020 15:59:57,185 INFO : 56% Done

11 May 2020 15:59:57,406 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:57,406 INFO : Inserting O51E2

11 May 2020 15:59:57,576 INFO : 57% Done

11 May 2020 15:59:57,781 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:57,782 INFO : Inserting OSTP

11 May 2020 15:59:57,786 INFO : 58% Done

11 May 2020 15:59:57,997 INFO : 59% Done

11 May 2020 15:59:58,203 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:58,204 INFO : Inserting P53

11 May 2020 15:59:58,208 INFO : 60% Done

11 May 2020 15:59:58,419 INFO : 61% Done

11 May 2020 15:59:58,626 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:58,626 INFO : Inserting PAFA

11 May 2020 15:59:58,631 INFO : 62% Done

11 May 2020 15:59:58,838 INFO : 63% Done

11 May 2020 15:59:59,044 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:59,044 INFO : Inserting PGFRB

11 May 2020 15:59:59,212 INFO : 64% Done

11 May 2020 15:59:59,418 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:59,418 INFO : Inserting PK3CA

11 May 2020 15:59:59,422 INFO : 65% Done

11 May 2020 15:59:59,629 INFO : 66% Done

11 May 2020 15:59:59,832 DEBUG: Total peptides inserted: 2

11 May 2020 15:59:59,833 INFO : Inserting RAF1

11 May 2020 15:59:59,837 INFO : 67% Done

11 May 2020 16:00:00,042 INFO : 68% Done

11 May 2020 16:00:00,204 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:00,204 INFO : Inserting SERPINI1

11 May 2020 16:00:00,208 INFO : 69% Done

11 May 2020 16:00:00,414 INFO : 70% Done

11 May 2020 16:00:00,620 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:00,620 INFO : Inserting SPINK1

11 May 2020 16:00:00,624 INFO : 71% Done

11 May 2020 16:00:00,831 INFO : 72% Done

11 May 2020 16:00:01,037 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:01,037 INFO : Inserting SPRC

11 May 2020 16:00:01,249 INFO : 73% Done

11 May 2020 16:00:01,456 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:01,456 INFO : Inserting TGFB1

11 May 2020 16:00:01,460 INFO : 74% Done

11 May 2020 16:00:01,887 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:01,887 INFO : Inserting TMPS2

11 May 2020 16:00:01,892 INFO : 75% Done

11 May 2020 16:00:02,100 INFO : 76% Done

11 May 2020 16:00:02,300 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:02,301 INFO : Inserting TPM2

11 May 2020 16:00:02,305 INFO : 77% Done

11 May 2020 16:00:02,509 INFO : 78% Done

11 May 2020 16:00:02,711 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:02,711 INFO : Inserting TWST1

11 May 2020 16:00:02,715 INFO : 79% Done

11 May 2020 16:00:02,919 INFO : 80% Done

11 May 2020 16:00:03,119 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:03,119 INFO : Inserting VEGFA

11 May 2020 16:00:03,123 INFO : 81% Done

11 May 2020 16:00:03,326 INFO : 82% Done

11 May 2020 16:00:03,528 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:03,528 INFO : Inserting PSA

11 May 2020 16:00:03,532 INFO : 83% Done

11 May 2020 16:00:03,934 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:03,934 INFO : Inserting ERG_pan

11 May 2020 16:00:03,938 INFO : 84% Done

11 May 2020 16:00:04,143 INFO : 85% Done

11 May 2020 16:00:04,379 INFO : 86% Done

11 May 2020 16:00:04,605 INFO : 87% Done

11 May 2020 16:00:04,825 INFO : 88% Done

11 May 2020 16:00:05,050 INFO : 89% Done

11 May 2020 16:00:05,287 INFO : 90% Done

11 May 2020 16:00:05,504 DEBUG: Total peptides inserted: 7

11 May 2020 16:00:05,504 INFO : Inserting ETV1

11 May 2020 16:00:05,508 INFO : 91% Done

11 May 2020 16:00:05,729 INFO : 92% Done

11 May 2020 16:00:05,953 INFO : 93% Done

11 May 2020 16:00:06,173 DEBUG: Total peptides inserted: 3

11 May 2020 16:00:06,173 INFO : Inserting ERG8

11 May 2020 16:00:06,177 INFO : 94% Done

11 May 2020 16:00:06,399 INFO : 95% Done

11 May 2020 16:00:06,618 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:06,618 INFO : Inserting SMAD4

11 May 2020 16:00:06,860 INFO : 96% Done

11 May 2020 16:00:07,035 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:07,035 INFO : Inserting STAT3

11 May 2020 16:00:07,039 INFO : 97% Done

11 May 2020 16:00:07,259 INFO : 98% Done

11 May 2020 16:00:07,477 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:07,477 INFO : Done parsing Skyline document.

11 May 2020 16:00:07,479 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:00:07,627 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:00:08,284 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:00:08,480 INFO : Cleaning up temp tables

11 May 2020 16:00:08,859 INFO : Completed import of Skyline document from CPDR-FFPE-ID-40_2020-01-28_10-56-22.sky.zip

11 May 2020 16:00:08,861 INFO : 100% Done

11 May 2020 16:00:08,870 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80172/CPDR-FFPE-ID-40_2020-01-28_10-56-22.sky.zip into the system

11 May 2020 16:00:08,870 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80167/CPDR-FFPE-ID-330_2020-01-28_10-52-13/CPDR-FFPE-ID-330.skyd into the system

11 May 2020 16:00:08,871 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80167/CPDR-FFPE-ID-330_2020-01-28_10-52-13/CPDR-FFPE-ID-330.skyd into the system

11 May 2020 16:00:08,872 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80167/CPDR-FFPE-ID-330_2020-01-28_10-52-13.sky.zip into the system

11 May 2020 16:00:08,875 INFO : Starting import from CPDR-FFPE-ID-330_2020-01-28_10-52-13.sky.zip

11 May 2020 16:00:08,880 INFO : Starting to import Skyline document from CPDR-FFPE-ID-330_2020-01-28_10-52-13.sky.zip

11 May 2020 16:00:08,899 INFO : Expanding CPDR-FFPE-ID-330.skyd

11 May 2020 16:00:09,349 INFO : Expanding CPDR-FFPE-ID-330.sky.view

11 May 2020 16:00:09,350 INFO : Expanding CPDR-FFPE-ID-330.sky

11 May 2020 16:00:09,810 INFO : Inserting TFF3

11 May 2020 16:00:09,817 INFO : 1% Done

11 May 2020 16:00:10,008 INFO : 2% Done

11 May 2020 16:00:10,214 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:10,215 INFO : Inserting AKT1

11 May 2020 16:00:10,218 INFO : 3% Done

11 May 2020 16:00:10,388 INFO : 4% Done

11 May 2020 16:00:10,599 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:10,600 INFO : Inserting AMACR

11 May 2020 16:00:10,604 INFO : 5% Done

11 May 2020 16:00:10,888 INFO : 6% Done

11 May 2020 16:00:11,095 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:11,096 INFO : Inserting ANDR

11 May 2020 16:00:11,100 INFO : 7% Done

11 May 2020 16:00:11,514 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:11,514 INFO : 8% Done

11 May 2020 16:00:11,514 INFO : Inserting ANXA2

11 May 2020 16:00:11,729 INFO : 9% Done

11 May 2020 16:00:11,933 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:11,933 INFO : Inserting AURKA

11 May 2020 16:00:11,937 INFO : 10% Done

11 May 2020 16:00:12,147 INFO : 11% Done

11 May 2020 16:00:12,358 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:12,359 INFO : Inserting BRAF

11 May 2020 16:00:12,363 INFO : 12% Done

11 May 2020 16:00:12,577 INFO : 13% Done

11 May 2020 16:00:12,801 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:12,801 INFO : Inserting CAMKK2

11 May 2020 16:00:12,805 INFO : 14% Done

11 May 2020 16:00:13,021 INFO : 15% Done

11 May 2020 16:00:13,256 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:13,256 INFO : Inserting CCND1

11 May 2020 16:00:13,260 INFO : 16% Done

11 May 2020 16:00:13,479 INFO : 17% Done

11 May 2020 16:00:13,647 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:13,647 INFO : Inserting CDN1A

11 May 2020 16:00:13,866 INFO : 18% Done

11 May 2020 16:00:14,078 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:14,079 INFO : Inserting CRISP3

11 May 2020 16:00:14,083 INFO : 19% Done

11 May 2020 16:00:14,315 INFO : 20% Done

11 May 2020 16:00:14,529 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:14,530 INFO : Inserting DCOR

11 May 2020 16:00:14,534 INFO : 21% Done

11 May 2020 16:00:14,747 INFO : 22% Done

11 May 2020 16:00:14,976 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:14,976 INFO : Inserting EGFR

11 May 2020 16:00:14,980 INFO : 23% Done

11 May 2020 16:00:15,196 INFO : 24% Done

11 May 2020 16:00:15,365 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:15,366 INFO : Inserting EZH2

11 May 2020 16:00:15,370 INFO : 25% Done

11 May 2020 16:00:15,796 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:15,796 INFO : Inserting FGFR1

11 May 2020 16:00:16,013 INFO : 26% Done

11 May 2020 16:00:16,222 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:16,222 INFO : Inserting FOLH1

11 May 2020 16:00:16,226 INFO : 27% Done

11 May 2020 16:00:16,445 INFO : 28% Done

11 May 2020 16:00:16,655 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:16,655 INFO : Inserting HIF1A

11 May 2020 16:00:16,660 INFO : 29% Done

11 May 2020 16:00:16,874 INFO : 30% Done

11 May 2020 16:00:17,085 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:17,085 INFO : Inserting HPN

11 May 2020 16:00:17,089 INFO : 31% Done

11 May 2020 16:00:17,311 INFO : 32% Done

11 May 2020 16:00:17,523 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:17,523 INFO : Inserting HSPB1

11 May 2020 16:00:17,527 INFO : 33% Done

11 May 2020 16:00:17,742 INFO : 34% Done

11 May 2020 16:00:17,953 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:17,953 INFO : Inserting HXC6

11 May 2020 16:00:17,957 INFO : 35% Done

11 May 2020 16:00:18,170 INFO : 36% Done

11 May 2020 16:00:18,402 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:18,402 INFO : Inserting KLK11

11 May 2020 16:00:18,407 INFO : 37% Done

11 May 2020 16:00:18,833 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:18,834 INFO : Inserting KLK2

11 May 2020 16:00:18,838 INFO : 38% Done

11 May 2020 16:00:19,053 INFO : 39% Done

11 May 2020 16:00:19,271 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:19,272 INFO : Inserting MMP2

11 May 2020 16:00:19,276 INFO : 40% Done

11 May 2020 16:00:19,490 INFO : 41% Done

11 May 2020 16:00:19,655 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:19,655 INFO : Inserting MMP9

11 May 2020 16:00:19,659 INFO : 42% Done

11 May 2020 16:00:19,869 INFO : 43% Done

11 May 2020 16:00:20,094 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:20,094 INFO : Inserting MUC1

11 May 2020 16:00:20,098 INFO : 44% Done

11 May 2020 16:00:20,314 INFO : 45% Done

11 May 2020 16:00:20,528 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:20,528 INFO : Inserting MUC6

11 May 2020 16:00:20,765 INFO : 46% Done

11 May 2020 16:00:20,976 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:20,976 INFO : Inserting MYC

11 May 2020 16:00:20,981 INFO : 47% Done

11 May 2020 16:00:21,216 INFO : 48% Done

11 May 2020 16:00:21,425 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:21,426 INFO : Inserting MYCN

11 May 2020 16:00:21,430 INFO : 49% Done

11 May 2020 16:00:21,644 INFO : 50% Done

11 May 2020 16:00:21,854 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:21,854 INFO : Inserting MYO6

11 May 2020 16:00:21,859 INFO : 51% Done

11 May 2020 16:00:22,091 INFO : 52% Done

11 May 2020 16:00:22,298 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:22,299 INFO : Inserting NCOA2

11 May 2020 16:00:22,303 INFO : 53% Done

11 May 2020 16:00:22,516 INFO : 54% Done

11 May 2020 16:00:22,727 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:22,728 INFO : Inserting NPY

11 May 2020 16:00:22,732 INFO : 55% Done

11 May 2020 16:00:22,945 INFO : 56% Done

11 May 2020 16:00:23,156 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:23,157 INFO : Inserting O51E2

11 May 2020 16:00:23,336 INFO : 57% Done

11 May 2020 16:00:23,547 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:23,547 INFO : Inserting OSTP

11 May 2020 16:00:23,551 INFO : 58% Done

11 May 2020 16:00:23,769 INFO : 59% Done

11 May 2020 16:00:23,983 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:23,983 INFO : Inserting P53

11 May 2020 16:00:23,987 INFO : 60% Done

11 May 2020 16:00:24,203 INFO : 61% Done

11 May 2020 16:00:24,417 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:24,417 INFO : Inserting PAFA

11 May 2020 16:00:24,422 INFO : 62% Done

11 May 2020 16:00:24,648 INFO : 63% Done

11 May 2020 16:00:24,860 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:24,861 INFO : Inserting PGFRB

11 May 2020 16:00:24,865 INFO : 64% Done

11 May 2020 16:00:25,248 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:25,248 INFO : Inserting PK3CA

11 May 2020 16:00:25,252 INFO : 65% Done

11 May 2020 16:00:25,465 INFO : 66% Done

11 May 2020 16:00:25,674 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:25,674 INFO : Inserting RAF1

11 May 2020 16:00:25,678 INFO : 67% Done

11 May 2020 16:00:25,891 INFO : 68% Done

11 May 2020 16:00:26,059 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:26,059 INFO : Inserting SERPINI1

11 May 2020 16:00:26,063 INFO : 69% Done

11 May 2020 16:00:26,291 INFO : 70% Done

11 May 2020 16:00:26,501 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:26,502 INFO : Inserting SPINK1

11 May 2020 16:00:26,506 INFO : 71% Done

11 May 2020 16:00:26,720 INFO : 72% Done

11 May 2020 16:00:26,929 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:26,930 INFO : Inserting SPRC

11 May 2020 16:00:27,149 INFO : 73% Done

11 May 2020 16:00:27,363 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:27,364 INFO : Inserting TGFB1

11 May 2020 16:00:27,368 INFO : 74% Done

11 May 2020 16:00:27,794 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:27,794 INFO : Inserting TMPS2

11 May 2020 16:00:27,798 INFO : 75% Done

11 May 2020 16:00:28,014 INFO : 76% Done

11 May 2020 16:00:28,227 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:28,228 INFO : Inserting TPM2

11 May 2020 16:00:28,232 INFO : 77% Done

11 May 2020 16:00:28,446 INFO : 78% Done

11 May 2020 16:00:28,658 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:28,658 INFO : Inserting TWST1

11 May 2020 16:00:28,662 INFO : 79% Done

11 May 2020 16:00:28,883 INFO : 80% Done

11 May 2020 16:00:29,095 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:29,095 INFO : Inserting VEGFA

11 May 2020 16:00:29,100 INFO : 81% Done

11 May 2020 16:00:29,314 INFO : 82% Done

11 May 2020 16:00:29,527 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:29,527 INFO : Inserting PSA

11 May 2020 16:00:29,531 INFO : 83% Done

11 May 2020 16:00:29,748 INFO : 84% Done

11 May 2020 16:00:29,958 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:29,959 INFO : Inserting ERG_pan

11 May 2020 16:00:30,195 INFO : 85% Done

11 May 2020 16:00:30,430 INFO : 86% Done

11 May 2020 16:00:30,650 INFO : 87% Done

11 May 2020 16:00:30,866 INFO : 88% Done

11 May 2020 16:00:31,097 INFO : 89% Done

11 May 2020 16:00:31,311 INFO : 90% Done

11 May 2020 16:00:31,523 DEBUG: Total peptides inserted: 7

11 May 2020 16:00:31,523 INFO : Inserting ETV1

11 May 2020 16:00:31,527 INFO : 91% Done

11 May 2020 16:00:31,742 INFO : 92% Done

11 May 2020 16:00:31,956 INFO : 93% Done

11 May 2020 16:00:32,167 DEBUG: Total peptides inserted: 3

11 May 2020 16:00:32,167 INFO : Inserting ERG8

11 May 2020 16:00:32,171 INFO : 94% Done

11 May 2020 16:00:32,387 INFO : 95% Done

11 May 2020 16:00:32,606 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:32,607 INFO : Inserting SMAD4

11 May 2020 16:00:32,611 INFO : 96% Done

11 May 2020 16:00:32,993 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:32,993 INFO : Inserting STAT3

11 May 2020 16:00:32,997 INFO : 97% Done

11 May 2020 16:00:33,213 INFO : 98% Done

11 May 2020 16:00:33,469 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:33,469 INFO : Done parsing Skyline document.

11 May 2020 16:00:33,471 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:00:33,625 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:00:34,295 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:00:34,489 INFO : Cleaning up temp tables

11 May 2020 16:00:34,491 INFO : Completed import of Skyline document from CPDR-FFPE-ID-330_2020-01-28_10-52-13.sky.zip

11 May 2020 16:00:34,516 INFO : 100% Done

11 May 2020 16:00:34,523 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80167/CPDR-FFPE-ID-330_2020-01-28_10-52-13.sky.zip into the system

11 May 2020 16:00:34,523 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80165/CPDR-FFPE-ID-349_2020-01-28_10-50-58/CPDR-FFPE-ID-349.skyd into the system

11 May 2020 16:00:34,524 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80165/CPDR-FFPE-ID-349_2020-01-28_10-50-58/CPDR-FFPE-ID-349.skyd into the system

11 May 2020 16:00:34,524 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80165/CPDR-FFPE-ID-349_2020-01-28_10-50-58.sky.zip into the system

11 May 2020 16:00:34,527 INFO : Starting import from CPDR-FFPE-ID-349_2020-01-28_10-50-58.sky.zip

11 May 2020 16:00:34,530 INFO : Starting to import Skyline document from CPDR-FFPE-ID-349_2020-01-28_10-50-58.sky.zip

11 May 2020 16:00:34,539 INFO : Expanding CPDR-FFPE-ID-349.skyd

11 May 2020 16:00:34,730 INFO : Expanding CPDR-FFPE-ID-349.sky.view

11 May 2020 16:00:34,731 INFO : Expanding CPDR-FFPE-ID-349.sky

11 May 2020 16:00:35,039 INFO : Inserting TFF3

11 May 2020 16:00:35,043 INFO : 1% Done

11 May 2020 16:00:35,131 INFO : 2% Done

11 May 2020 16:00:35,214 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:35,214 INFO : Inserting AKT1

11 May 2020 16:00:35,216 INFO : 3% Done

11 May 2020 16:00:35,283 INFO : 4% Done

11 May 2020 16:00:35,366 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:35,366 INFO : Inserting AMACR

11 May 2020 16:00:35,368 INFO : 5% Done

11 May 2020 16:00:35,452 INFO : 6% Done

11 May 2020 16:00:35,537 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:35,537 INFO : Inserting ANDR

11 May 2020 16:00:35,539 INFO : 7% Done

11 May 2020 16:00:35,754 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:35,755 INFO : Inserting ANXA2

11 May 2020 16:00:35,757 INFO : 8% Done

11 May 2020 16:00:35,850 INFO : 9% Done

11 May 2020 16:00:35,944 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:35,944 INFO : Inserting AURKA

11 May 2020 16:00:35,946 INFO : 10% Done

11 May 2020 16:00:36,042 INFO : 11% Done

11 May 2020 16:00:36,146 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:36,146 INFO : Inserting BRAF

11 May 2020 16:00:36,148 INFO : 12% Done

11 May 2020 16:00:36,259 INFO : 13% Done

11 May 2020 16:00:36,365 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:36,365 INFO : Inserting CAMKK2

11 May 2020 16:00:36,367 INFO : 14% Done

11 May 2020 16:00:36,474 INFO : 15% Done

11 May 2020 16:00:36,580 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:36,580 INFO : Inserting CCND1

11 May 2020 16:00:36,583 INFO : 16% Done

11 May 2020 16:00:36,693 INFO : 17% Done

11 May 2020 16:00:36,779 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:36,779 INFO : Inserting CDN1A

11 May 2020 16:00:36,892 INFO : 18% Done

11 May 2020 16:00:37,001 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:37,001 INFO : Inserting CRISP3

11 May 2020 16:00:37,004 INFO : 19% Done

11 May 2020 16:00:37,118 INFO : 20% Done

11 May 2020 16:00:37,232 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:37,233 INFO : Inserting DCOR

11 May 2020 16:00:37,235 INFO : 21% Done

11 May 2020 16:00:37,350 INFO : 22% Done

11 May 2020 16:00:37,464 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:37,464 INFO : Inserting EGFR

11 May 2020 16:00:37,466 INFO : 23% Done

11 May 2020 16:00:37,584 INFO : 24% Done

11 May 2020 16:00:37,680 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:37,680 INFO : Inserting EZH2

11 May 2020 16:00:37,683 INFO : 25% Done

11 May 2020 16:00:37,923 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:37,923 INFO : Inserting FGFR1

11 May 2020 16:00:38,047 INFO : 26% Done

11 May 2020 16:00:38,185 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:38,185 INFO : Inserting FOLH1

11 May 2020 16:00:38,188 INFO : 27% Done

11 May 2020 16:00:38,315 INFO : 28% Done

11 May 2020 16:00:38,440 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:38,440 INFO : Inserting HIF1A

11 May 2020 16:00:38,442 INFO : 29% Done

11 May 2020 16:00:38,573 INFO : 30% Done

11 May 2020 16:00:38,704 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:38,704 INFO : Inserting HPN

11 May 2020 16:00:38,707 INFO : 31% Done

11 May 2020 16:00:38,840 INFO : 32% Done

11 May 2020 16:00:38,986 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:38,986 INFO : Inserting HSPB1

11 May 2020 16:00:38,989 INFO : 33% Done

11 May 2020 16:00:39,129 INFO : 34% Done

11 May 2020 16:00:39,269 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:39,269 INFO : Inserting HXC6

11 May 2020 16:00:39,272 INFO : 35% Done

11 May 2020 16:00:39,413 INFO : 36% Done

11 May 2020 16:00:39,556 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:39,556 INFO : Inserting KLK11

11 May 2020 16:00:39,559 INFO : 37% Done

11 May 2020 16:00:39,857 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:39,857 INFO : Inserting KLK2

11 May 2020 16:00:39,860 INFO : 38% Done

11 May 2020 16:00:40,013 INFO : 39% Done

11 May 2020 16:00:40,171 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:40,171 INFO : Inserting MMP2

11 May 2020 16:00:40,174 INFO : 40% Done

11 May 2020 16:00:40,332 INFO : 41% Done

11 May 2020 16:00:40,458 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:40,458 INFO : Inserting MMP9

11 May 2020 16:00:40,461 INFO : 42% Done

11 May 2020 16:00:40,627 INFO : 43% Done

11 May 2020 16:00:40,793 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:40,793 INFO : Inserting MUC1

11 May 2020 16:00:40,796 INFO : 44% Done

11 May 2020 16:00:41,089 INFO : 45% Done

11 May 2020 16:00:41,300 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:41,300 INFO : Inserting MUC6

11 May 2020 16:00:41,585 INFO : 46% Done

11 May 2020 16:00:41,846 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:41,846 INFO : Inserting MYC

11 May 2020 16:00:41,850 INFO : 47% Done

11 May 2020 16:00:42,068 INFO : 48% Done

11 May 2020 16:00:42,282 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:42,282 INFO : Inserting MYCN

11 May 2020 16:00:42,287 INFO : 49% Done

11 May 2020 16:00:42,507 INFO : 50% Done

11 May 2020 16:00:42,719 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:42,719 INFO : Inserting MYO6

11 May 2020 16:00:42,724 INFO : 51% Done

11 May 2020 16:00:42,937 INFO : 52% Done

11 May 2020 16:00:43,149 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:43,149 INFO : Inserting NCOA2

11 May 2020 16:00:43,154 INFO : 53% Done

11 May 2020 16:00:43,370 INFO : 54% Done

11 May 2020 16:00:43,586 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:43,586 INFO : Inserting NPY

11 May 2020 16:00:43,591 INFO : 55% Done

11 May 2020 16:00:43,807 INFO : 56% Done

11 May 2020 16:00:44,050 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:44,051 INFO : Inserting O51E2

11 May 2020 16:00:44,223 INFO : 57% Done

11 May 2020 16:00:44,431 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:44,431 INFO : Inserting OSTP

11 May 2020 16:00:44,435 INFO : 58% Done

11 May 2020 16:00:44,656 INFO : 59% Done

11 May 2020 16:00:44,887 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:44,887 INFO : Inserting P53

11 May 2020 16:00:44,891 INFO : 60% Done

11 May 2020 16:00:45,202 INFO : 61% Done

11 May 2020 16:00:45,442 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:45,442 INFO : Inserting PAFA

11 May 2020 16:00:45,447 INFO : 62% Done

11 May 2020 16:00:45,694 INFO : 63% Done

11 May 2020 16:00:45,935 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:45,935 INFO : Inserting PGFRB

11 May 2020 16:00:46,134 INFO : 64% Done

11 May 2020 16:00:46,374 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:46,374 INFO : Inserting PK3CA

11 May 2020 16:00:46,379 INFO : 65% Done

11 May 2020 16:00:46,651 INFO : 66% Done

11 May 2020 16:00:46,891 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:46,891 INFO : Inserting RAF1

11 May 2020 16:00:46,896 INFO : 67% Done

11 May 2020 16:00:47,152 INFO : 68% Done

11 May 2020 16:00:47,345 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:47,345 INFO : Inserting SERPINI1

11 May 2020 16:00:47,349 INFO : 69% Done

11 May 2020 16:00:47,593 INFO : 70% Done

11 May 2020 16:00:47,834 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:47,835 INFO : Inserting SPINK1

11 May 2020 16:00:47,839 INFO : 71% Done

11 May 2020 16:00:48,087 INFO : 72% Done

11 May 2020 16:00:48,329 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:48,329 INFO : Inserting SPRC

11 May 2020 16:00:48,596 INFO : 73% Done

11 May 2020 16:00:48,838 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:48,838 INFO : Inserting TGFB1

11 May 2020 16:00:48,842 INFO : 74% Done

11 May 2020 16:00:49,330 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:49,330 INFO : Inserting TMPS2

11 May 2020 16:00:49,335 INFO : 75% Done

11 May 2020 16:00:49,578 INFO : 76% Done

11 May 2020 16:00:49,819 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:49,819 INFO : Inserting TPM2

11 May 2020 16:00:49,823 INFO : 77% Done

11 May 2020 16:00:50,070 INFO : 78% Done

11 May 2020 16:00:50,290 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:50,290 INFO : Inserting TWST1

11 May 2020 16:00:50,295 INFO : 79% Done

11 May 2020 16:00:50,513 INFO : 80% Done

11 May 2020 16:00:50,746 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:50,746 INFO : Inserting VEGFA

11 May 2020 16:00:50,750 INFO : 81% Done

11 May 2020 16:00:51,008 INFO : 82% Done

11 May 2020 16:00:51,248 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:51,248 INFO : Inserting PSA

11 May 2020 16:00:51,253 INFO : 83% Done

11 May 2020 16:00:51,496 INFO : 84% Done

11 May 2020 16:00:51,737 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:51,737 INFO : Inserting ERG_pan

11 May 2020 16:00:51,985 INFO : 85% Done

11 May 2020 16:00:52,231 INFO : 86% Done

11 May 2020 16:00:52,477 INFO : 87% Done

11 May 2020 16:00:52,723 INFO : 88% Done

11 May 2020 16:00:52,965 INFO : 89% Done

11 May 2020 16:00:53,208 INFO : 90% Done

11 May 2020 16:00:53,447 DEBUG: Total peptides inserted: 7

11 May 2020 16:00:53,447 INFO : Inserting ETV1

11 May 2020 16:00:53,452 INFO : 91% Done

11 May 2020 16:00:53,694 INFO : 92% Done

11 May 2020 16:00:53,939 INFO : 93% Done

11 May 2020 16:00:54,180 DEBUG: Total peptides inserted: 3

11 May 2020 16:00:54,181 INFO : Inserting ERG8

11 May 2020 16:00:54,185 INFO : 94% Done

11 May 2020 16:00:54,427 INFO : 95% Done

11 May 2020 16:00:54,667 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:54,667 INFO : Inserting SMAD4

11 May 2020 16:00:54,672 INFO : 96% Done

11 May 2020 16:00:55,112 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:55,112 INFO : Inserting STAT3

11 May 2020 16:00:55,116 INFO : 97% Done

11 May 2020 16:00:55,359 INFO : 98% Done

11 May 2020 16:00:55,617 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:55,617 INFO : Done parsing Skyline document.

11 May 2020 16:00:55,619 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:00:55,773 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:00:56,624 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:00:56,814 INFO : Cleaning up temp tables

11 May 2020 16:00:57,276 INFO : Completed import of Skyline document from CPDR-FFPE-ID-349_2020-01-28_10-50-58.sky.zip

11 May 2020 16:00:57,277 INFO : 100% Done

11 May 2020 16:00:57,327 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80165/CPDR-FFPE-ID-349_2020-01-28_10-50-58.sky.zip into the system

11 May 2020 16:00:57,327 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80158/CPDR-FFPE-ID-306_2020-01-28_10-46-01/CPDR-FFPE-ID-306.skyd into the system

11 May 2020 16:00:57,328 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80158/CPDR-FFPE-ID-306_2020-01-28_10-46-01/CPDR-FFPE-ID-306.skyd into the system

11 May 2020 16:00:57,329 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80158/CPDR-FFPE-ID-306_2020-01-28_10-46-01.sky.zip into the system

11 May 2020 16:00:57,335 INFO : Starting import from CPDR-FFPE-ID-306_2020-01-28_10-46-01.sky.zip

11 May 2020 16:00:57,343 INFO : Starting to import Skyline document from CPDR-FFPE-ID-306_2020-01-28_10-46-01.sky.zip

11 May 2020 16:00:57,374 INFO : Expanding CPDR-FFPE-ID-306.skyd

11 May 2020 16:00:58,051 INFO : Expanding CPDR-FFPE-ID-306.sky.view

11 May 2020 16:00:58,052 INFO : Expanding CPDR-FFPE-ID-306.sky

11 May 2020 16:00:58,498 INFO : Inserting TFF3

11 May 2020 16:00:58,502 INFO : 1% Done

11 May 2020 16:00:58,722 INFO : 2% Done

11 May 2020 16:00:58,879 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:58,879 INFO : Inserting AKT1

11 May 2020 16:00:58,881 INFO : 3% Done

11 May 2020 16:00:59,004 INFO : 4% Done

11 May 2020 16:00:59,342 DEBUG: Total peptides inserted: 2

11 May 2020 16:00:59,343 INFO : Inserting AMACR

11 May 2020 16:00:59,349 INFO : 5% Done

11 May 2020 16:00:59,717 INFO : 6% Done

11 May 2020 16:01:00,091 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:00,092 INFO : Inserting ANDR

11 May 2020 16:01:00,098 INFO : 7% Done

11 May 2020 16:01:00,831 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:00,831 INFO : Inserting ANXA2

11 May 2020 16:01:00,837 INFO : 8% Done

11 May 2020 16:01:01,369 INFO : 9% Done

11 May 2020 16:01:01,777 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:01,777 INFO : Inserting AURKA

11 May 2020 16:01:01,783 INFO : 10% Done

11 May 2020 16:01:02,165 INFO : 11% Done

11 May 2020 16:01:02,546 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:02,546 INFO : Inserting BRAF

11 May 2020 16:01:02,552 INFO : 12% Done

11 May 2020 16:01:02,965 INFO : 13% Done

11 May 2020 16:01:03,371 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:03,372 INFO : Inserting CAMKK2

11 May 2020 16:01:03,378 INFO : 14% Done

11 May 2020 16:01:03,767 INFO : 15% Done

11 May 2020 16:01:04,139 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:04,139 INFO : Inserting CCND1

11 May 2020 16:01:04,145 INFO : 16% Done

11 May 2020 16:01:04,823 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:04,823 INFO : Inserting CDN1A

11 May 2020 16:01:04,829 INFO : 17% Done

11 May 2020 16:01:05,222 INFO : 18% Done

11 May 2020 16:01:05,606 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:05,606 INFO : Inserting CRISP3

11 May 2020 16:01:05,612 INFO : 19% Done

11 May 2020 16:01:05,951 INFO : 20% Done

11 May 2020 16:01:06,278 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:06,278 INFO : Inserting DCOR

11 May 2020 16:01:06,284 INFO : 21% Done

11 May 2020 16:01:06,615 INFO : 22% Done

11 May 2020 16:01:06,946 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:06,946 INFO : Inserting EGFR

11 May 2020 16:01:06,952 INFO : 23% Done

11 May 2020 16:01:07,279 INFO : 24% Done

11 May 2020 16:01:07,541 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:07,541 INFO : Inserting EZH2

11 May 2020 16:01:07,547 INFO : 25% Done

11 May 2020 16:01:08,215 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:08,216 INFO : Inserting FGFR1

11 May 2020 16:01:08,570 INFO : 26% Done

11 May 2020 16:01:08,900 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:08,901 INFO : Inserting FOLH1

11 May 2020 16:01:08,906 INFO : 27% Done

11 May 2020 16:01:09,236 INFO : 28% Done

11 May 2020 16:01:09,561 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:09,561 INFO : Inserting HIF1A

11 May 2020 16:01:09,567 INFO : 29% Done

11 May 2020 16:01:09,898 INFO : 30% Done

11 May 2020 16:01:10,221 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:10,221 INFO : Inserting HPN

11 May 2020 16:01:10,227 INFO : 31% Done

11 May 2020 16:01:10,557 INFO : 32% Done

11 May 2020 16:01:10,877 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:10,878 INFO : Inserting HSPB1

11 May 2020 16:01:10,883 INFO : 33% Done

11 May 2020 16:01:11,212 INFO : 34% Done

11 May 2020 16:01:11,535 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:11,535 INFO : Inserting HXC6

11 May 2020 16:01:11,541 INFO : 35% Done

11 May 2020 16:01:11,864 INFO : 36% Done

11 May 2020 16:01:12,184 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:12,184 INFO : Inserting KLK11

11 May 2020 16:01:12,514 INFO : 37% Done

11 May 2020 16:01:12,837 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:12,837 INFO : Inserting KLK2

11 May 2020 16:01:12,843 INFO : 38% Done

11 May 2020 16:01:13,167 INFO : 39% Done

11 May 2020 16:01:13,489 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:13,490 INFO : Inserting MMP2

11 May 2020 16:01:13,495 INFO : 40% Done

11 May 2020 16:01:13,818 INFO : 41% Done

11 May 2020 16:01:14,072 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:14,072 INFO : Inserting MMP9

11 May 2020 16:01:14,078 INFO : 42% Done

11 May 2020 16:01:14,387 INFO : 43% Done

11 May 2020 16:01:14,706 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:14,706 INFO : Inserting MUC1

11 May 2020 16:01:14,712 INFO : 44% Done

11 May 2020 16:01:15,037 INFO : 45% Done

11 May 2020 16:01:15,359 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:15,359 INFO : Inserting MUC6

11 May 2020 16:01:15,689 INFO : 46% Done

11 May 2020 16:01:16,011 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:16,011 INFO : Inserting MYC

11 May 2020 16:01:16,017 INFO : 47% Done

11 May 2020 16:01:16,347 INFO : 48% Done

11 May 2020 16:01:16,670 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:16,671 INFO : Inserting MYCN

11 May 2020 16:01:16,676 INFO : 49% Done

11 May 2020 16:01:17,007 INFO : 50% Done

11 May 2020 16:01:17,330 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:17,330 INFO : Inserting MYO6

11 May 2020 16:01:17,336 INFO : 51% Done

11 May 2020 16:01:17,663 INFO : 52% Done

11 May 2020 16:01:18,031 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:18,031 INFO : Inserting NCOA2

11 May 2020 16:01:18,037 INFO : 53% Done

11 May 2020 16:01:18,366 INFO : 54% Done

11 May 2020 16:01:18,685 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:18,686 INFO : Inserting NPY

11 May 2020 16:01:18,691 INFO : 55% Done

11 May 2020 16:01:19,017 INFO : 56% Done

11 May 2020 16:01:19,336 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:19,336 INFO : Inserting O51E2

11 May 2020 16:01:19,602 INFO : 57% Done

11 May 2020 16:01:19,924 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:19,924 INFO : Inserting OSTP

11 May 2020 16:01:19,930 INFO : 58% Done

11 May 2020 16:01:20,254 INFO : 59% Done

11 May 2020 16:01:20,595 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:20,595 INFO : Inserting P53

11 May 2020 16:01:20,601 INFO : 60% Done

11 May 2020 16:01:20,960 INFO : 61% Done

11 May 2020 16:01:21,299 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:21,300 INFO : Inserting PAFA

11 May 2020 16:01:21,306 INFO : 62% Done

11 May 2020 16:01:21,666 INFO : 63% Done

11 May 2020 16:01:22,032 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:22,032 INFO : Inserting PGFRB

11 May 2020 16:01:22,342 INFO : 64% Done

11 May 2020 16:01:22,672 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:22,672 INFO : Inserting PK3CA

11 May 2020 16:01:22,678 INFO : 65% Done

11 May 2020 16:01:23,032 INFO : 66% Done

11 May 2020 16:01:23,357 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:23,357 INFO : Inserting RAF1

11 May 2020 16:01:23,363 INFO : 67% Done

11 May 2020 16:01:23,709 INFO : 68% Done

11 May 2020 16:01:23,971 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:23,972 INFO : Inserting SERPINI1

11 May 2020 16:01:23,977 INFO : 69% Done

11 May 2020 16:01:24,321 INFO : 70% Done

11 May 2020 16:01:24,649 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:24,649 INFO : Inserting SPINK1

11 May 2020 16:01:24,655 INFO : 71% Done

11 May 2020 16:01:24,993 INFO : 72% Done

11 May 2020 16:01:25,329 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:25,329 INFO : Inserting SPRC

11 May 2020 16:01:25,663 INFO : 73% Done

11 May 2020 16:01:26,003 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:26,003 INFO : Inserting TGFB1

11 May 2020 16:01:26,009 INFO : 74% Done

11 May 2020 16:01:26,683 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:26,684 INFO : Inserting TMPS2

11 May 2020 16:01:26,690 INFO : 75% Done

11 May 2020 16:01:27,082 INFO : 76% Done

11 May 2020 16:01:27,443 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:27,443 INFO : Inserting TPM2

11 May 2020 16:01:27,449 INFO : 77% Done

11 May 2020 16:01:27,845 INFO : 78% Done

11 May 2020 16:01:28,181 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:28,181 INFO : Inserting TWST1

11 May 2020 16:01:28,187 INFO : 79% Done

11 May 2020 16:01:28,515 INFO : 80% Done

11 May 2020 16:01:28,883 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:28,883 INFO : Inserting VEGFA

11 May 2020 16:01:28,889 INFO : 81% Done

11 May 2020 16:01:29,220 INFO : 82% Done

11 May 2020 16:01:29,545 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:29,545 INFO : Inserting PSA

11 May 2020 16:01:29,551 INFO : 83% Done

11 May 2020 16:01:30,341 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:30,341 INFO : Inserting ERG_pan

11 May 2020 16:01:30,347 INFO : 84% Done

11 May 2020 16:01:30,693 INFO : 85% Done

11 May 2020 16:01:31,024 INFO : 86% Done

11 May 2020 16:01:31,360 INFO : 87% Done

11 May 2020 16:01:31,690 INFO : 88% Done

11 May 2020 16:01:32,017 INFO : 89% Done

11 May 2020 16:01:32,347 INFO : 90% Done

11 May 2020 16:01:32,651 DEBUG: Total peptides inserted: 7

11 May 2020 16:01:32,651 INFO : Inserting ETV1

11 May 2020 16:01:32,657 INFO : 91% Done

11 May 2020 16:01:32,945 INFO : 92% Done

11 May 2020 16:01:33,264 INFO : 93% Done

11 May 2020 16:01:33,609 DEBUG: Total peptides inserted: 3

11 May 2020 16:01:33,609 INFO : Inserting ERG8

11 May 2020 16:01:33,615 INFO : 94% Done

11 May 2020 16:01:33,958 INFO : 95% Done

11 May 2020 16:01:34,285 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:34,285 INFO : Inserting SMAD4

11 May 2020 16:01:34,589 INFO : 96% Done

11 May 2020 16:01:34,743 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:34,743 INFO : Inserting STAT3

11 May 2020 16:01:34,749 INFO : 97% Done

11 May 2020 16:01:34,933 INFO : 98% Done

11 May 2020 16:01:35,118 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:35,118 INFO : Done parsing Skyline document.

11 May 2020 16:01:35,120 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:01:35,230 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:01:35,943 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:01:36,247 INFO : Cleaning up temp tables

11 May 2020 16:01:36,636 INFO : Completed import of Skyline document from CPDR-FFPE-ID-306_2020-01-28_10-46-01.sky.zip

11 May 2020 16:01:36,638 INFO : 100% Done

11 May 2020 16:01:36,650 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80158/CPDR-FFPE-ID-306_2020-01-28_10-46-01.sky.zip into the system

11 May 2020 16:01:36,651 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80182/CPDR-FFPE-ID-92_2020-01-28_11-02-53/CPDR-FFPE-ID-92.skyd into the system

11 May 2020 16:01:36,652 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80182/CPDR-FFPE-ID-92_2020-01-28_11-02-53/CPDR-FFPE-ID-92.skyd into the system

11 May 2020 16:01:36,652 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80182/CPDR-FFPE-ID-92_2020-01-28_11-02-53.sky.zip into the system

11 May 2020 16:01:36,658 INFO : Starting import from CPDR-FFPE-ID-92_2020-01-28_11-02-53.sky.zip

11 May 2020 16:01:36,665 INFO : Starting to import Skyline document from CPDR-FFPE-ID-92_2020-01-28_11-02-53.sky.zip

11 May 2020 16:01:36,682 INFO : Expanding CPDR-FFPE-ID-92.skyd

11 May 2020 16:01:37,108 INFO : Expanding CPDR-FFPE-ID-92.sky.view

11 May 2020 16:01:37,109 INFO : Expanding CPDR-FFPE-ID-92.sky

11 May 2020 16:01:37,643 INFO : Inserting TFF3

11 May 2020 16:01:37,646 INFO : 1% Done

11 May 2020 16:01:37,733 INFO : 2% Done

11 May 2020 16:01:37,813 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:37,813 INFO : Inserting AKT1

11 May 2020 16:01:37,815 INFO : 3% Done

11 May 2020 16:01:37,881 INFO : 4% Done

11 May 2020 16:01:37,961 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:37,961 INFO : Inserting AMACR

11 May 2020 16:01:37,963 INFO : 5% Done

11 May 2020 16:01:38,149 INFO : 6% Done

11 May 2020 16:01:38,353 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:38,354 INFO : Inserting ANDR

11 May 2020 16:01:38,358 INFO : 7% Done

11 May 2020 16:01:38,565 INFO : 8% Done

11 May 2020 16:01:38,770 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:38,770 INFO : Inserting ANXA2

11 May 2020 16:01:38,985 INFO : 9% Done

11 May 2020 16:01:39,187 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:39,187 INFO : Inserting AURKA

11 May 2020 16:01:39,192 INFO : 10% Done

11 May 2020 16:01:39,397 INFO : 11% Done

11 May 2020 16:01:39,600 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:39,601 INFO : Inserting BRAF

11 May 2020 16:01:39,605 INFO : 12% Done

11 May 2020 16:01:39,810 INFO : 13% Done

11 May 2020 16:01:40,013 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:40,013 INFO : Inserting CAMKK2

11 May 2020 16:01:40,018 INFO : 14% Done

11 May 2020 16:01:40,226 INFO : 15% Done

11 May 2020 16:01:40,428 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:40,428 INFO : Inserting CCND1

11 May 2020 16:01:40,432 INFO : 16% Done

11 May 2020 16:01:40,643 INFO : 17% Done

11 May 2020 16:01:40,804 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:40,804 INFO : Inserting CDN1A

11 May 2020 16:01:41,019 INFO : 18% Done

11 May 2020 16:01:41,245 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:41,245 INFO : Inserting CRISP3

11 May 2020 16:01:41,249 INFO : 19% Done

11 May 2020 16:01:41,532 INFO : 20% Done

11 May 2020 16:01:41,765 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:41,765 INFO : Inserting DCOR

11 May 2020 16:01:41,769 INFO : 21% Done

11 May 2020 16:01:42,002 INFO : 22% Done

11 May 2020 16:01:42,234 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:42,235 INFO : Inserting EGFR

11 May 2020 16:01:42,239 INFO : 23% Done

11 May 2020 16:01:42,474 INFO : 24% Done

11 May 2020 16:01:42,661 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:42,661 INFO : Inserting EZH2

11 May 2020 16:01:42,665 INFO : 25% Done

11 May 2020 16:01:43,134 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:43,134 INFO : Inserting FGFR1

11 May 2020 16:01:43,373 INFO : 26% Done

11 May 2020 16:01:43,604 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:43,604 INFO : Inserting FOLH1

11 May 2020 16:01:43,608 INFO : 27% Done

11 May 2020 16:01:43,842 INFO : 28% Done

11 May 2020 16:01:44,073 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:44,073 INFO : Inserting HIF1A

11 May 2020 16:01:44,078 INFO : 29% Done

11 May 2020 16:01:44,312 INFO : 30% Done

11 May 2020 16:01:44,545 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:44,545 INFO : Inserting HPN

11 May 2020 16:01:44,549 INFO : 31% Done

11 May 2020 16:01:44,783 INFO : 32% Done

11 May 2020 16:01:45,012 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:45,012 INFO : Inserting HSPB1

11 May 2020 16:01:45,016 INFO : 33% Done

11 May 2020 16:01:45,226 INFO : 34% Done

11 May 2020 16:01:45,435 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:45,435 INFO : Inserting HXC6

11 May 2020 16:01:45,439 INFO : 35% Done

11 May 2020 16:01:45,645 INFO : 36% Done

11 May 2020 16:01:45,843 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:45,843 INFO : Inserting KLK11

11 May 2020 16:01:46,023 INFO : 37% Done

11 May 2020 16:01:46,226 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:46,226 INFO : Inserting KLK2

11 May 2020 16:01:46,230 INFO : 38% Done

11 May 2020 16:01:46,435 INFO : 39% Done

11 May 2020 16:01:46,638 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:46,638 INFO : Inserting MMP2

11 May 2020 16:01:46,643 INFO : 40% Done

11 May 2020 16:01:46,846 INFO : 41% Done

11 May 2020 16:01:47,038 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:47,038 INFO : Inserting MMP9

11 May 2020 16:01:47,042 INFO : 42% Done

11 May 2020 16:01:47,250 INFO : 43% Done

11 May 2020 16:01:47,457 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:47,457 INFO : Inserting MUC1

11 May 2020 16:01:47,461 INFO : 44% Done

11 May 2020 16:01:47,694 INFO : 45% Done

11 May 2020 16:01:48,014 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:48,015 INFO : Inserting MUC6

11 May 2020 16:01:48,265 INFO : 46% Done

11 May 2020 16:01:48,501 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:48,501 INFO : Inserting MYC

11 May 2020 16:01:48,506 INFO : 47% Done

11 May 2020 16:01:48,745 INFO : 48% Done

11 May 2020 16:01:48,976 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:48,976 INFO : Inserting MYCN

11 May 2020 16:01:48,981 INFO : 49% Done

11 May 2020 16:01:49,215 INFO : 50% Done

11 May 2020 16:01:49,449 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:49,449 INFO : Inserting MYO6

11 May 2020 16:01:49,454 INFO : 51% Done

11 May 2020 16:01:49,689 INFO : 52% Done

11 May 2020 16:01:49,925 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:49,925 INFO : Inserting NCOA2

11 May 2020 16:01:49,929 INFO : 53% Done

11 May 2020 16:01:50,192 INFO : 54% Done

11 May 2020 16:01:50,423 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:50,423 INFO : Inserting NPY

11 May 2020 16:01:50,427 INFO : 55% Done

11 May 2020 16:01:50,663 INFO : 56% Done

11 May 2020 16:01:50,896 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:50,896 INFO : Inserting O51E2

11 May 2020 16:01:51,088 INFO : 57% Done

11 May 2020 16:01:51,318 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:51,318 INFO : Inserting OSTP

11 May 2020 16:01:51,322 INFO : 58% Done

11 May 2020 16:01:51,560 INFO : 59% Done

11 May 2020 16:01:51,904 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:51,904 INFO : Inserting P53

11 May 2020 16:01:51,909 INFO : 60% Done

11 May 2020 16:01:52,147 INFO : 61% Done

11 May 2020 16:01:52,378 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:52,378 INFO : Inserting PAFA

11 May 2020 16:01:52,383 INFO : 62% Done

11 May 2020 16:01:52,621 INFO : 63% Done

11 May 2020 16:01:52,863 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:52,863 INFO : Inserting PGFRB

11 May 2020 16:01:53,059 INFO : 64% Done

11 May 2020 16:01:53,290 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:53,290 INFO : Inserting PK3CA

11 May 2020 16:01:53,295 INFO : 65% Done

11 May 2020 16:01:53,548 INFO : 66% Done

11 May 2020 16:01:53,777 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:53,777 INFO : Inserting RAF1

11 May 2020 16:01:53,793 INFO : 67% Done

11 May 2020 16:01:54,026 INFO : 68% Done

11 May 2020 16:01:54,211 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:54,211 INFO : Inserting SERPINI1

11 May 2020 16:01:54,215 INFO : 69% Done

11 May 2020 16:01:54,450 INFO : 70% Done

11 May 2020 16:01:54,672 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:54,672 INFO : Inserting SPINK1

11 May 2020 16:01:54,676 INFO : 71% Done

11 May 2020 16:01:54,889 INFO : 72% Done

11 May 2020 16:01:55,094 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:55,094 INFO : Inserting SPRC

11 May 2020 16:01:55,305 INFO : 73% Done

11 May 2020 16:01:55,521 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:55,521 INFO : Inserting TGFB1

11 May 2020 16:01:55,525 INFO : 74% Done

11 May 2020 16:01:55,990 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:55,990 INFO : Inserting TMPS2

11 May 2020 16:01:55,994 INFO : 75% Done

11 May 2020 16:01:56,228 INFO : 76% Done

11 May 2020 16:01:56,460 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:56,460 INFO : Inserting TPM2

11 May 2020 16:01:56,464 INFO : 77% Done

11 May 2020 16:01:56,699 INFO : 78% Done

11 May 2020 16:01:56,947 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:56,947 INFO : Inserting TWST1

11 May 2020 16:01:56,952 INFO : 79% Done

11 May 2020 16:01:57,186 INFO : 80% Done

11 May 2020 16:01:57,416 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:57,416 INFO : Inserting VEGFA

11 May 2020 16:01:57,421 INFO : 81% Done

11 May 2020 16:01:57,665 INFO : 82% Done

11 May 2020 16:01:57,914 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:57,914 INFO : Inserting PSA

11 May 2020 16:01:57,919 INFO : 83% Done

11 May 2020 16:01:58,153 INFO : 84% Done

11 May 2020 16:01:58,384 DEBUG: Total peptides inserted: 2

11 May 2020 16:01:58,384 INFO : Inserting ERG_pan

11 May 2020 16:01:58,624 INFO : 85% Done

11 May 2020 16:01:58,861 INFO : 86% Done

11 May 2020 16:01:59,112 INFO : 87% Done

11 May 2020 16:01:59,347 INFO : 88% Done

11 May 2020 16:01:59,582 INFO : 89% Done

11 May 2020 16:01:59,814 INFO : 90% Done

11 May 2020 16:02:00,043 DEBUG: Total peptides inserted: 7

11 May 2020 16:02:00,043 INFO : Inserting ETV1

11 May 2020 16:02:00,047 INFO : 91% Done

11 May 2020 16:02:00,262 INFO : 92% Done

11 May 2020 16:02:00,479 INFO : 93% Done

11 May 2020 16:02:00,714 DEBUG: Total peptides inserted: 3

11 May 2020 16:02:00,715 INFO : Inserting ERG8

11 May 2020 16:02:00,719 INFO : 94% Done

11 May 2020 16:02:00,955 INFO : 95% Done

11 May 2020 16:02:01,186 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:01,187 INFO : Inserting SMAD4

11 May 2020 16:02:01,432 INFO : 96% Done

11 May 2020 16:02:01,628 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:01,629 INFO : Inserting STAT3

11 May 2020 16:02:01,633 INFO : 97% Done

11 May 2020 16:02:01,851 INFO : 98% Done

11 May 2020 16:02:02,060 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:02,060 INFO : Done parsing Skyline document.

11 May 2020 16:02:02,062 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:02:02,210 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:02:03,062 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:02:03,243 INFO : Cleaning up temp tables

11 May 2020 16:02:03,638 INFO : Completed import of Skyline document from CPDR-FFPE-ID-92_2020-01-28_11-02-53.sky.zip

11 May 2020 16:02:03,640 INFO : 100% Done

11 May 2020 16:02:03,653 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80182/CPDR-FFPE-ID-92_2020-01-28_11-02-53.sky.zip into the system

11 May 2020 16:02:03,653 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80180/CPDR-FFPE-ID-376_2020-01-28_11-01-31/CPDR-FFPE-ID-376.skyd into the system

11 May 2020 16:02:03,654 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80180/CPDR-FFPE-ID-376_2020-01-28_11-01-31/CPDR-FFPE-ID-376.skyd into the system

11 May 2020 16:02:03,655 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80180/CPDR-FFPE-ID-376_2020-01-28_11-01-31.sky.zip into the system

11 May 2020 16:02:03,660 INFO : Starting import from CPDR-FFPE-ID-376_2020-01-28_11-01-31.sky.zip

11 May 2020 16:02:03,667 INFO : Starting to import Skyline document from CPDR-FFPE-ID-376_2020-01-28_11-01-31.sky.zip

11 May 2020 16:02:03,684 INFO : Expanding CPDR-FFPE-ID-376.skyd

11 May 2020 16:02:04,105 INFO : Expanding CPDR-FFPE-ID-376.sky.view

11 May 2020 16:02:04,107 INFO : Expanding CPDR-FFPE-ID-376.sky

11 May 2020 16:02:04,695 INFO : Inserting TFF3

11 May 2020 16:02:04,701 INFO : 1% Done

11 May 2020 16:02:04,894 INFO : 2% Done

11 May 2020 16:02:05,110 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:05,110 INFO : Inserting AKT1

11 May 2020 16:02:05,125 INFO : 3% Done

11 May 2020 16:02:05,305 INFO : 4% Done

11 May 2020 16:02:05,512 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:05,513 INFO : Inserting AMACR

11 May 2020 16:02:05,517 INFO : 5% Done

11 May 2020 16:02:05,729 INFO : 6% Done

11 May 2020 16:02:05,940 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:05,940 INFO : Inserting ANDR

11 May 2020 16:02:05,945 INFO : 7% Done

11 May 2020 16:02:06,158 INFO : 8% Done

11 May 2020 16:02:06,366 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:06,366 INFO : Inserting ANXA2

11 May 2020 16:02:06,590 INFO : 9% Done

11 May 2020 16:02:06,795 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:06,796 INFO : Inserting AURKA

11 May 2020 16:02:06,800 INFO : 10% Done

11 May 2020 16:02:07,008 INFO : 11% Done

11 May 2020 16:02:07,216 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:07,216 INFO : Inserting BRAF

11 May 2020 16:02:07,221 INFO : 12% Done

11 May 2020 16:02:07,454 INFO : 13% Done

11 May 2020 16:02:07,660 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:07,660 INFO : Inserting CAMKK2

11 May 2020 16:02:07,664 INFO : 14% Done

11 May 2020 16:02:07,872 INFO : 15% Done

11 May 2020 16:02:08,073 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:08,073 INFO : Inserting CCND1

11 May 2020 16:02:08,078 INFO : 16% Done

11 May 2020 16:02:08,284 INFO : 17% Done

11 May 2020 16:02:08,454 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:08,454 INFO : Inserting CDN1A

11 May 2020 16:02:08,685 INFO : 18% Done

11 May 2020 16:02:08,898 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:08,898 INFO : Inserting CRISP3

11 May 2020 16:02:08,903 INFO : 19% Done

11 May 2020 16:02:09,122 INFO : 20% Done

11 May 2020 16:02:09,329 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:09,329 INFO : Inserting DCOR

11 May 2020 16:02:09,333 INFO : 21% Done

11 May 2020 16:02:09,571 INFO : 22% Done

11 May 2020 16:02:09,787 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:09,787 INFO : Inserting EGFR

11 May 2020 16:02:09,791 INFO : 23% Done

11 May 2020 16:02:10,004 INFO : 24% Done

11 May 2020 16:02:10,172 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:10,172 INFO : Inserting EZH2

11 May 2020 16:02:10,176 INFO : 25% Done

11 May 2020 16:02:10,589 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:10,589 INFO : Inserting FGFR1

11 May 2020 16:02:10,797 INFO : 26% Done

11 May 2020 16:02:10,987 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:10,987 INFO : Inserting FOLH1

11 May 2020 16:02:10,991 INFO : 27% Done

11 May 2020 16:02:11,196 INFO : 28% Done

11 May 2020 16:02:11,400 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:11,400 INFO : Inserting HIF1A

11 May 2020 16:02:11,404 INFO : 29% Done

11 May 2020 16:02:11,643 INFO : 30% Done

11 May 2020 16:02:11,852 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:11,852 INFO : Inserting HPN

11 May 2020 16:02:11,856 INFO : 31% Done

11 May 2020 16:02:12,066 INFO : 32% Done

11 May 2020 16:02:12,274 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:12,274 INFO : Inserting HSPB1

11 May 2020 16:02:12,278 INFO : 33% Done

11 May 2020 16:02:12,487 INFO : 34% Done

11 May 2020 16:02:12,694 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:12,694 INFO : Inserting HXC6

11 May 2020 16:02:12,698 INFO : 35% Done

11 May 2020 16:02:12,908 INFO : 36% Done

11 May 2020 16:02:13,117 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:13,117 INFO : Inserting KLK11

11 May 2020 16:02:13,330 INFO : 37% Done

11 May 2020 16:02:13,541 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:13,541 INFO : Inserting KLK2

11 May 2020 16:02:13,546 INFO : 38% Done

11 May 2020 16:02:13,783 INFO : 39% Done

11 May 2020 16:02:14,017 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:14,017 INFO : Inserting MMP2

11 May 2020 16:02:14,021 INFO : 40% Done

11 May 2020 16:02:14,257 INFO : 41% Done

11 May 2020 16:02:14,446 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:14,446 INFO : Inserting MMP9

11 May 2020 16:02:14,451 INFO : 42% Done

11 May 2020 16:02:14,684 INFO : 43% Done

11 May 2020 16:02:14,890 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:14,890 INFO : Inserting MUC1

11 May 2020 16:02:14,894 INFO : 44% Done

11 May 2020 16:02:15,097 INFO : 45% Done

11 May 2020 16:02:15,297 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:15,297 INFO : Inserting MUC6

11 May 2020 16:02:15,507 INFO : 46% Done

11 May 2020 16:02:15,712 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:15,713 INFO : Inserting MYC

11 May 2020 16:02:15,717 INFO : 47% Done

11 May 2020 16:02:15,921 INFO : 48% Done

11 May 2020 16:02:16,122 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:16,122 INFO : Inserting MYCN

11 May 2020 16:02:16,126 INFO : 49% Done

11 May 2020 16:02:16,337 INFO : 50% Done

11 May 2020 16:02:16,556 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:16,556 INFO : Inserting MYO6

11 May 2020 16:02:16,560 INFO : 51% Done

11 May 2020 16:02:16,767 INFO : 52% Done

11 May 2020 16:02:16,969 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:16,969 INFO : Inserting NCOA2

11 May 2020 16:02:16,973 INFO : 53% Done

11 May 2020 16:02:17,180 INFO : 54% Done

11 May 2020 16:02:17,406 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:17,407 INFO : Inserting NPY

11 May 2020 16:02:17,411 INFO : 55% Done

11 May 2020 16:02:17,633 INFO : 56% Done

11 May 2020 16:02:17,858 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:17,859 INFO : Inserting O51E2

11 May 2020 16:02:18,031 INFO : 57% Done

11 May 2020 16:02:18,236 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:18,236 INFO : Inserting OSTP

11 May 2020 16:02:18,240 INFO : 58% Done

11 May 2020 16:02:18,450 INFO : 59% Done

11 May 2020 16:02:18,654 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:18,655 INFO : Inserting P53

11 May 2020 16:02:18,659 INFO : 60% Done

11 May 2020 16:02:18,869 INFO : 61% Done

11 May 2020 16:02:19,074 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:19,074 INFO : Inserting PAFA

11 May 2020 16:02:19,078 INFO : 62% Done

11 May 2020 16:02:19,305 INFO : 63% Done

11 May 2020 16:02:19,517 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:19,517 INFO : Inserting PGFRB

11 May 2020 16:02:19,691 INFO : 64% Done

11 May 2020 16:02:19,931 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:19,931 INFO : Inserting PK3CA

11 May 2020 16:02:19,935 INFO : 65% Done

11 May 2020 16:02:20,158 INFO : 66% Done

11 May 2020 16:02:20,364 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:20,364 INFO : Inserting RAF1

11 May 2020 16:02:20,368 INFO : 67% Done

11 May 2020 16:02:20,640 INFO : 68% Done

11 May 2020 16:02:20,813 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:20,813 INFO : Inserting SERPINI1

11 May 2020 16:02:20,817 INFO : 69% Done

11 May 2020 16:02:21,029 INFO : 70% Done

11 May 2020 16:02:21,248 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:21,249 INFO : Inserting SPINK1

11 May 2020 16:02:21,253 INFO : 71% Done

11 May 2020 16:02:21,463 INFO : 72% Done

11 May 2020 16:02:21,680 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:21,680 INFO : Inserting SPRC

11 May 2020 16:02:21,684 INFO : 73% Done

11 May 2020 16:02:22,103 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:22,104 INFO : Inserting TGFB1

11 May 2020 16:02:22,108 INFO : 74% Done

11 May 2020 16:02:22,525 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:22,526 INFO : Inserting TMPS2

11 May 2020 16:02:22,530 INFO : 75% Done

11 May 2020 16:02:22,741 INFO : 76% Done

11 May 2020 16:02:22,951 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:22,952 INFO : Inserting TPM2

11 May 2020 16:02:22,956 INFO : 77% Done

11 May 2020 16:02:23,170 INFO : 78% Done

11 May 2020 16:02:23,383 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:23,383 INFO : Inserting TWST1

11 May 2020 16:02:23,388 INFO : 79% Done

11 May 2020 16:02:23,600 INFO : 80% Done

11 May 2020 16:02:23,807 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:23,807 INFO : Inserting VEGFA

11 May 2020 16:02:23,811 INFO : 81% Done

11 May 2020 16:02:24,022 INFO : 82% Done

11 May 2020 16:02:24,229 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:24,229 INFO : Inserting PSA

11 May 2020 16:02:24,233 INFO : 83% Done

11 May 2020 16:02:24,441 INFO : 84% Done

11 May 2020 16:02:24,656 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:24,656 INFO : Inserting ERG_pan

11 May 2020 16:02:24,882 INFO : 85% Done

11 May 2020 16:02:25,099 INFO : 86% Done

11 May 2020 16:02:25,331 INFO : 87% Done

11 May 2020 16:02:25,550 INFO : 88% Done

11 May 2020 16:02:25,761 INFO : 89% Done

11 May 2020 16:02:25,972 INFO : 90% Done

11 May 2020 16:02:26,177 DEBUG: Total peptides inserted: 7

11 May 2020 16:02:26,178 INFO : Inserting ETV1

11 May 2020 16:02:26,182 INFO : 91% Done

11 May 2020 16:02:26,390 INFO : 92% Done

11 May 2020 16:02:26,598 INFO : 93% Done

11 May 2020 16:02:26,804 DEBUG: Total peptides inserted: 3

11 May 2020 16:02:26,804 INFO : Inserting ERG8

11 May 2020 16:02:26,808 INFO : 94% Done

11 May 2020 16:02:27,015 INFO : 95% Done

11 May 2020 16:02:27,247 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:27,247 INFO : Inserting SMAD4

11 May 2020 16:02:27,252 INFO : 96% Done

11 May 2020 16:02:27,632 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:27,633 INFO : Inserting STAT3

11 May 2020 16:02:27,637 INFO : 97% Done

11 May 2020 16:02:27,844 INFO : 98% Done

11 May 2020 16:02:28,048 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:28,048 INFO : Done parsing Skyline document.

11 May 2020 16:02:28,050 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:02:28,198 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:02:29,145 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:02:29,544 INFO : Cleaning up temp tables

11 May 2020 16:02:29,562 INFO : Completed import of Skyline document from CPDR-FFPE-ID-376_2020-01-28_11-01-31.sky.zip

11 May 2020 16:02:29,563 INFO : 100% Done

11 May 2020 16:02:29,574 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80180/CPDR-FFPE-ID-376_2020-01-28_11-01-31.sky.zip into the system

11 May 2020 16:02:29,574 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80175/CPDR-FFPE-ID-350_2020-01-28_10-58-15/CPDR-FFPE-ID-350.skyd into the system

11 May 2020 16:02:29,575 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80175/CPDR-FFPE-ID-350_2020-01-28_10-58-15/CPDR-FFPE-ID-350.skyd into the system

11 May 2020 16:02:29,576 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80175/CPDR-FFPE-ID-350_2020-01-28_10-58-15.sky.zip into the system

11 May 2020 16:02:29,580 INFO : Starting import from CPDR-FFPE-ID-350_2020-01-28_10-58-15.sky.zip

11 May 2020 16:02:29,585 INFO : Starting to import Skyline document from CPDR-FFPE-ID-350_2020-01-28_10-58-15.sky.zip

11 May 2020 16:02:29,596 INFO : Expanding CPDR-FFPE-ID-350.skyd

11 May 2020 16:02:29,904 INFO : Expanding CPDR-FFPE-ID-350.sky.view

11 May 2020 16:02:29,905 INFO : Expanding CPDR-FFPE-ID-350.sky

11 May 2020 16:02:30,325 INFO : Inserting TFF3

11 May 2020 16:02:30,330 INFO : 1% Done

11 May 2020 16:02:30,459 INFO : 2% Done

11 May 2020 16:02:30,619 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:30,620 INFO : Inserting AKT1

11 May 2020 16:02:30,623 INFO : 3% Done

11 May 2020 16:02:30,786 INFO : 4% Done

11 May 2020 16:02:31,036 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:31,037 INFO : Inserting AMACR

11 May 2020 16:02:31,041 INFO : 5% Done

11 May 2020 16:02:31,284 INFO : 6% Done

11 May 2020 16:02:31,519 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:31,519 INFO : Inserting ANDR

11 May 2020 16:02:31,523 INFO : 7% Done

11 May 2020 16:02:31,761 INFO : 8% Done

11 May 2020 16:02:31,994 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:31,994 INFO : Inserting ANXA2

11 May 2020 16:02:32,234 INFO : 9% Done

11 May 2020 16:02:32,460 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:32,460 INFO : Inserting AURKA

11 May 2020 16:02:32,465 INFO : 10% Done

11 May 2020 16:02:32,675 INFO : 11% Done

11 May 2020 16:02:32,882 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:32,882 INFO : Inserting BRAF

11 May 2020 16:02:32,887 INFO : 12% Done

11 May 2020 16:02:33,092 INFO : 13% Done

11 May 2020 16:02:33,342 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:33,343 INFO : Inserting CAMKK2

11 May 2020 16:02:33,347 INFO : 14% Done

11 May 2020 16:02:33,560 INFO : 15% Done

11 May 2020 16:02:33,762 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:33,762 INFO : Inserting CCND1

11 May 2020 16:02:33,767 INFO : 16% Done

11 May 2020 16:02:34,132 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:34,133 INFO : Inserting CDN1A

11 May 2020 16:02:34,137 INFO : 17% Done

11 May 2020 16:02:34,345 INFO : 18% Done

11 May 2020 16:02:34,550 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:34,550 INFO : Inserting CRISP3

11 May 2020 16:02:34,555 INFO : 19% Done

11 May 2020 16:02:34,800 INFO : 20% Done

11 May 2020 16:02:35,001 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:35,001 INFO : Inserting DCOR

11 May 2020 16:02:35,005 INFO : 21% Done

11 May 2020 16:02:35,236 INFO : 22% Done

11 May 2020 16:02:35,441 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:35,441 INFO : Inserting EGFR

11 May 2020 16:02:35,446 INFO : 23% Done

11 May 2020 16:02:35,660 INFO : 24% Done

11 May 2020 16:02:35,843 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:35,844 INFO : Inserting EZH2

11 May 2020 16:02:35,848 INFO : 25% Done

11 May 2020 16:02:36,317 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:36,318 INFO : Inserting FGFR1

11 May 2020 16:02:36,556 INFO : 26% Done

11 May 2020 16:02:36,788 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:36,788 INFO : Inserting FOLH1

11 May 2020 16:02:36,792 INFO : 27% Done

11 May 2020 16:02:37,027 INFO : 28% Done

11 May 2020 16:02:37,258 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:37,258 INFO : Inserting HIF1A

11 May 2020 16:02:37,263 INFO : 29% Done

11 May 2020 16:02:37,499 INFO : 30% Done

11 May 2020 16:02:37,730 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:37,730 INFO : Inserting HPN

11 May 2020 16:02:37,735 INFO : 31% Done

11 May 2020 16:02:37,969 INFO : 32% Done

11 May 2020 16:02:38,201 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:38,201 INFO : Inserting HSPB1

11 May 2020 16:02:38,206 INFO : 33% Done

11 May 2020 16:02:38,438 INFO : 34% Done

11 May 2020 16:02:38,668 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:38,668 INFO : Inserting HXC6

11 May 2020 16:02:38,672 INFO : 35% Done

11 May 2020 16:02:38,879 INFO : 36% Done

11 May 2020 16:02:39,129 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:39,129 INFO : Inserting KLK11

11 May 2020 16:02:39,341 INFO : 37% Done

11 May 2020 16:02:39,547 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:39,548 INFO : Inserting KLK2

11 May 2020 16:02:39,552 INFO : 38% Done

11 May 2020 16:02:39,758 INFO : 39% Done

11 May 2020 16:02:39,964 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:39,964 INFO : Inserting MMP2

11 May 2020 16:02:39,968 INFO : 40% Done

11 May 2020 16:02:40,174 INFO : 41% Done

11 May 2020 16:02:40,337 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:40,337 INFO : Inserting MMP9

11 May 2020 16:02:40,341 INFO : 42% Done

11 May 2020 16:02:40,566 INFO : 43% Done

11 May 2020 16:02:40,772 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:40,773 INFO : Inserting MUC1

11 May 2020 16:02:40,777 INFO : 44% Done

11 May 2020 16:02:40,981 INFO : 45% Done

11 May 2020 16:02:41,183 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:41,183 INFO : Inserting MUC6

11 May 2020 16:02:41,401 INFO : 46% Done

11 May 2020 16:02:41,616 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:41,617 INFO : Inserting MYC

11 May 2020 16:02:41,621 INFO : 47% Done

11 May 2020 16:02:41,827 INFO : 48% Done

11 May 2020 16:02:42,031 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:42,031 INFO : Inserting MYCN

11 May 2020 16:02:42,036 INFO : 49% Done

11 May 2020 16:02:42,241 INFO : 50% Done

11 May 2020 16:02:42,444 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:42,444 INFO : Inserting MYO6

11 May 2020 16:02:42,448 INFO : 51% Done

11 May 2020 16:02:42,653 INFO : 52% Done

11 May 2020 16:02:42,882 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:42,882 INFO : Inserting NCOA2

11 May 2020 16:02:42,886 INFO : 53% Done

11 May 2020 16:02:43,097 INFO : 54% Done

11 May 2020 16:02:43,300 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:43,300 INFO : Inserting NPY

11 May 2020 16:02:43,305 INFO : 55% Done

11 May 2020 16:02:43,512 INFO : 56% Done

11 May 2020 16:02:43,718 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:43,719 INFO : Inserting O51E2

11 May 2020 16:02:43,894 INFO : 57% Done

11 May 2020 16:02:44,101 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:44,101 INFO : Inserting OSTP

11 May 2020 16:02:44,106 INFO : 58% Done

11 May 2020 16:02:44,314 INFO : 59% Done

11 May 2020 16:02:44,539 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:44,539 INFO : Inserting P53

11 May 2020 16:02:44,543 INFO : 60% Done

11 May 2020 16:02:44,763 INFO : 61% Done

11 May 2020 16:02:44,980 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:44,981 INFO : Inserting PAFA

11 May 2020 16:02:44,985 INFO : 62% Done

11 May 2020 16:02:45,192 INFO : 63% Done

11 May 2020 16:02:45,405 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:45,405 INFO : Inserting PGFRB

11 May 2020 16:02:45,635 INFO : 64% Done

11 May 2020 16:02:45,844 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:45,844 INFO : Inserting PK3CA

11 May 2020 16:02:45,849 INFO : 65% Done

11 May 2020 16:02:46,057 INFO : 66% Done

11 May 2020 16:02:46,262 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:46,262 INFO : Inserting RAF1

11 May 2020 16:02:46,266 INFO : 67% Done

11 May 2020 16:02:46,523 INFO : 68% Done

11 May 2020 16:02:46,686 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:46,686 INFO : Inserting SERPINI1

11 May 2020 16:02:46,709 INFO : 69% Done

11 May 2020 16:02:46,917 INFO : 70% Done

11 May 2020 16:02:47,136 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:47,137 INFO : Inserting SPINK1

11 May 2020 16:02:47,141 INFO : 71% Done

11 May 2020 16:02:47,350 INFO : 72% Done

11 May 2020 16:02:47,553 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:47,553 INFO : Inserting SPRC

11 May 2020 16:02:47,557 INFO : 73% Done

11 May 2020 16:02:47,967 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:47,967 INFO : Inserting TGFB1

11 May 2020 16:02:47,971 INFO : 74% Done

11 May 2020 16:02:48,379 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:48,379 INFO : Inserting TMPS2

11 May 2020 16:02:48,383 INFO : 75% Done

11 May 2020 16:02:48,588 INFO : 76% Done

11 May 2020 16:02:48,790 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:48,790 INFO : Inserting TPM2

11 May 2020 16:02:48,794 INFO : 77% Done

11 May 2020 16:02:49,000 INFO : 78% Done

11 May 2020 16:02:49,203 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:49,203 INFO : Inserting TWST1

11 May 2020 16:02:49,207 INFO : 79% Done

11 May 2020 16:02:49,415 INFO : 80% Done

11 May 2020 16:02:49,609 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:49,609 INFO : Inserting VEGFA

11 May 2020 16:02:49,613 INFO : 81% Done

11 May 2020 16:02:49,789 INFO : 82% Done

11 May 2020 16:02:49,968 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:49,968 INFO : Inserting PSA

11 May 2020 16:02:49,972 INFO : 83% Done

11 May 2020 16:02:50,376 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:50,376 INFO : Inserting ERG_pan

11 May 2020 16:02:50,381 INFO : 84% Done

11 May 2020 16:02:50,587 INFO : 85% Done

11 May 2020 16:02:50,959 INFO : 86% Done

11 May 2020 16:02:51,169 INFO : 87% Done

11 May 2020 16:02:51,383 INFO : 88% Done

11 May 2020 16:02:51,596 INFO : 89% Done

11 May 2020 16:02:51,805 INFO : 90% Done

11 May 2020 16:02:52,009 DEBUG: Total peptides inserted: 7

11 May 2020 16:02:52,009 INFO : Inserting ETV1

11 May 2020 16:02:52,013 INFO : 91% Done

11 May 2020 16:02:52,222 INFO : 92% Done

11 May 2020 16:02:52,429 INFO : 93% Done

11 May 2020 16:02:52,631 DEBUG: Total peptides inserted: 3

11 May 2020 16:02:52,631 INFO : Inserting ERG8

11 May 2020 16:02:52,635 INFO : 94% Done

11 May 2020 16:02:52,840 INFO : 95% Done

11 May 2020 16:02:53,071 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:53,071 INFO : Inserting SMAD4

11 May 2020 16:02:53,288 INFO : 96% Done

11 May 2020 16:02:53,454 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:53,454 INFO : Inserting STAT3

11 May 2020 16:02:53,458 INFO : 97% Done

11 May 2020 16:02:53,670 INFO : 98% Done

11 May 2020 16:02:53,875 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:53,875 INFO : Done parsing Skyline document.

11 May 2020 16:02:53,877 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:02:54,026 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:02:55,063 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:02:55,253 INFO : Cleaning up temp tables

11 May 2020 16:02:55,692 INFO : Completed import of Skyline document from CPDR-FFPE-ID-350_2020-01-28_10-58-15.sky.zip

11 May 2020 16:02:55,693 INFO : 100% Done

11 May 2020 16:02:55,707 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80175/CPDR-FFPE-ID-350_2020-01-28_10-58-15.sky.zip into the system

11 May 2020 16:02:55,708 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80166/CPDR-FFPE-ID-322_2020-01-28_10-51-37/CPDR-FFPE-ID-322.skyd into the system

11 May 2020 16:02:55,709 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80166/CPDR-FFPE-ID-322_2020-01-28_10-51-37/CPDR-FFPE-ID-322.skyd into the system

11 May 2020 16:02:55,709 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80166/CPDR-FFPE-ID-322_2020-01-28_10-51-37.sky.zip into the system

11 May 2020 16:02:55,713 INFO : Starting import from CPDR-FFPE-ID-322_2020-01-28_10-51-37.sky.zip

11 May 2020 16:02:55,720 INFO : Starting to import Skyline document from CPDR-FFPE-ID-322_2020-01-28_10-51-37.sky.zip

11 May 2020 16:02:55,737 INFO : Expanding CPDR-FFPE-ID-322.skyd

11 May 2020 16:02:56,192 INFO : Expanding CPDR-FFPE-ID-322.sky.view

11 May 2020 16:02:56,193 INFO : Expanding CPDR-FFPE-ID-322.sky

11 May 2020 16:02:56,762 INFO : Inserting TFF3

11 May 2020 16:02:56,769 INFO : 1% Done

11 May 2020 16:02:56,923 INFO : 2% Done

11 May 2020 16:02:57,006 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:57,006 INFO : Inserting AKT1

11 May 2020 16:02:57,008 INFO : 3% Done

11 May 2020 16:02:57,154 INFO : 4% Done

11 May 2020 16:02:57,367 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:57,367 INFO : Inserting AMACR

11 May 2020 16:02:57,371 INFO : 5% Done

11 May 2020 16:02:57,584 INFO : 6% Done

11 May 2020 16:02:57,812 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:57,813 INFO : Inserting ANDR

11 May 2020 16:02:57,817 INFO : 7% Done

11 May 2020 16:02:58,250 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:58,250 INFO : Inserting ANXA2

11 May 2020 16:02:58,255 INFO : 8% Done

11 May 2020 16:02:58,470 INFO : 9% Done

11 May 2020 16:02:58,685 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:58,685 INFO : Inserting AURKA

11 May 2020 16:02:58,689 INFO : 10% Done

11 May 2020 16:02:58,904 INFO : 11% Done

11 May 2020 16:02:59,123 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:59,124 INFO : Inserting BRAF

11 May 2020 16:02:59,128 INFO : 12% Done

11 May 2020 16:02:59,388 INFO : 13% Done

11 May 2020 16:02:59,611 DEBUG: Total peptides inserted: 2

11 May 2020 16:02:59,611 INFO : Inserting CAMKK2

11 May 2020 16:02:59,616 INFO : 14% Done

11 May 2020 16:02:59,873 INFO : 15% Done

11 May 2020 16:03:00,108 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:00,109 INFO : Inserting CCND1

11 May 2020 16:03:00,113 INFO : 16% Done

11 May 2020 16:03:00,350 INFO : 17% Done

11 May 2020 16:03:00,537 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:00,537 INFO : Inserting CDN1A

11 May 2020 16:03:00,826 INFO : 18% Done

11 May 2020 16:03:01,061 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:01,062 INFO : Inserting CRISP3

11 May 2020 16:03:01,066 INFO : 19% Done

11 May 2020 16:03:01,306 INFO : 20% Done

11 May 2020 16:03:01,544 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:01,544 INFO : Inserting DCOR

11 May 2020 16:03:01,548 INFO : 21% Done

11 May 2020 16:03:01,787 INFO : 22% Done

11 May 2020 16:03:02,173 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:02,174 INFO : Inserting EGFR

11 May 2020 16:03:02,178 INFO : 23% Done

11 May 2020 16:03:02,400 INFO : 24% Done

11 May 2020 16:03:02,575 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:02,575 INFO : Inserting EZH2

11 May 2020 16:03:02,579 INFO : 25% Done

11 May 2020 16:03:03,004 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:03,004 INFO : Inserting FGFR1

11 May 2020 16:03:03,238 INFO : 26% Done

11 May 2020 16:03:03,470 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:03,470 INFO : Inserting FOLH1

11 May 2020 16:03:03,474 INFO : 27% Done

11 May 2020 16:03:03,689 INFO : 28% Done

11 May 2020 16:03:03,909 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:03,910 INFO : Inserting HIF1A

11 May 2020 16:03:03,914 INFO : 29% Done

11 May 2020 16:03:04,190 INFO : 30% Done

11 May 2020 16:03:04,405 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:04,406 INFO : Inserting HPN

11 May 2020 16:03:04,410 INFO : 31% Done

11 May 2020 16:03:04,631 INFO : 32% Done

11 May 2020 16:03:04,846 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:04,846 INFO : Inserting HSPB1

11 May 2020 16:03:04,850 INFO : 33% Done

11 May 2020 16:03:05,063 INFO : 34% Done

11 May 2020 16:03:05,272 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:05,272 INFO : Inserting HXC6

11 May 2020 16:03:05,276 INFO : 35% Done

11 May 2020 16:03:05,509 INFO : 36% Done

11 May 2020 16:03:06,444 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:06,445 INFO : Inserting KLK11

11 May 2020 16:03:06,449 INFO : 37% Done

11 May 2020 16:03:06,870 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:06,870 INFO : Inserting KLK2

11 May 2020 16:03:06,875 INFO : 38% Done

11 May 2020 16:03:07,084 INFO : 39% Done

11 May 2020 16:03:07,291 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:07,291 INFO : Inserting MMP2

11 May 2020 16:03:07,295 INFO : 40% Done

11 May 2020 16:03:07,522 INFO : 41% Done

11 May 2020 16:03:07,688 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:07,688 INFO : Inserting MMP9

11 May 2020 16:03:07,693 INFO : 42% Done

11 May 2020 16:03:07,913 INFO : 43% Done

11 May 2020 16:03:08,135 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:08,136 INFO : Inserting MUC1

11 May 2020 16:03:08,140 INFO : 44% Done

11 May 2020 16:03:08,351 INFO : 45% Done

11 May 2020 16:03:08,558 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:08,558 INFO : Inserting MUC6

11 May 2020 16:03:08,773 INFO : 46% Done

11 May 2020 16:03:08,980 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:08,980 INFO : Inserting MYC

11 May 2020 16:03:08,984 INFO : 47% Done

11 May 2020 16:03:09,265 INFO : 48% Done

11 May 2020 16:03:09,475 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:09,476 INFO : Inserting MYCN

11 May 2020 16:03:09,480 INFO : 49% Done

11 May 2020 16:03:09,691 INFO : 50% Done

11 May 2020 16:03:09,899 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:09,899 INFO : Inserting MYO6

11 May 2020 16:03:09,904 INFO : 51% Done

11 May 2020 16:03:10,116 INFO : 52% Done

11 May 2020 16:03:10,324 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:10,324 INFO : Inserting NCOA2

11 May 2020 16:03:10,329 INFO : 53% Done

11 May 2020 16:03:10,557 INFO : 54% Done

11 May 2020 16:03:10,763 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:10,763 INFO : Inserting NPY

11 May 2020 16:03:10,767 INFO : 55% Done

11 May 2020 16:03:10,980 INFO : 56% Done

11 May 2020 16:03:11,187 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:11,187 INFO : Inserting O51E2

11 May 2020 16:03:11,361 INFO : 57% Done

11 May 2020 16:03:11,577 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:11,577 INFO : Inserting OSTP

11 May 2020 16:03:11,581 INFO : 58% Done

11 May 2020 16:03:11,792 INFO : 59% Done

11 May 2020 16:03:12,004 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:12,005 INFO : Inserting P53

11 May 2020 16:03:12,009 INFO : 60% Done

11 May 2020 16:03:12,246 INFO : 61% Done

11 May 2020 16:03:12,453 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:12,453 INFO : Inserting PAFA

11 May 2020 16:03:12,457 INFO : 62% Done

11 May 2020 16:03:12,657 INFO : 63% Done

11 May 2020 16:03:12,847 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:12,847 INFO : Inserting PGFRB

11 May 2020 16:03:13,012 INFO : 64% Done

11 May 2020 16:03:13,218 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:13,218 INFO : Inserting PK3CA

11 May 2020 16:03:13,222 INFO : 65% Done

11 May 2020 16:03:13,432 INFO : 66% Done

11 May 2020 16:03:13,640 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:13,641 INFO : Inserting RAF1

11 May 2020 16:03:13,645 INFO : 67% Done

11 May 2020 16:03:13,863 INFO : 68% Done

11 May 2020 16:03:14,036 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:14,036 INFO : Inserting SERPINI1

11 May 2020 16:03:14,041 INFO : 69% Done

11 May 2020 16:03:14,268 INFO : 70% Done

11 May 2020 16:03:14,494 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:14,494 INFO : Inserting SPINK1

11 May 2020 16:03:14,498 INFO : 71% Done

11 May 2020 16:03:14,730 INFO : 72% Done

11 May 2020 16:03:14,976 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:14,976 INFO : Inserting SPRC

11 May 2020 16:03:15,212 INFO : 73% Done

11 May 2020 16:03:15,486 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:15,486 INFO : Inserting TGFB1

11 May 2020 16:03:15,490 INFO : 74% Done

11 May 2020 16:03:15,924 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:15,924 INFO : Inserting TMPS2

11 May 2020 16:03:15,929 INFO : 75% Done

11 May 2020 16:03:16,146 INFO : 76% Done

11 May 2020 16:03:16,375 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:16,375 INFO : Inserting TPM2

11 May 2020 16:03:16,379 INFO : 77% Done

11 May 2020 16:03:16,612 INFO : 78% Done

11 May 2020 16:03:16,839 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:16,839 INFO : Inserting TWST1

11 May 2020 16:03:16,843 INFO : 79% Done

11 May 2020 16:03:17,075 INFO : 80% Done

11 May 2020 16:03:17,301 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:17,301 INFO : Inserting VEGFA

11 May 2020 16:03:17,307 INFO : 81% Done

11 May 2020 16:03:17,538 INFO : 82% Done

11 May 2020 16:03:17,764 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:17,764 INFO : Inserting PSA

11 May 2020 16:03:17,769 INFO : 83% Done

11 May 2020 16:03:18,233 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:18,233 INFO : Inserting ERG_pan

11 May 2020 16:03:18,237 INFO : 84% Done

11 May 2020 16:03:18,466 INFO : 85% Done

11 May 2020 16:03:18,694 INFO : 86% Done

11 May 2020 16:03:18,899 INFO : 87% Done

11 May 2020 16:03:19,102 INFO : 88% Done

11 May 2020 16:03:19,384 INFO : 89% Done

11 May 2020 16:03:19,594 INFO : 90% Done

11 May 2020 16:03:19,804 DEBUG: Total peptides inserted: 7

11 May 2020 16:03:19,804 INFO : Inserting ETV1

11 May 2020 16:03:19,808 INFO : 91% Done

11 May 2020 16:03:20,022 INFO : 92% Done

11 May 2020 16:03:20,235 INFO : 93% Done

11 May 2020 16:03:20,445 DEBUG: Total peptides inserted: 3

11 May 2020 16:03:20,445 INFO : Inserting ERG8

11 May 2020 16:03:20,449 INFO : 94% Done

11 May 2020 16:03:20,663 INFO : 95% Done

11 May 2020 16:03:20,888 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:20,888 INFO : Inserting SMAD4

11 May 2020 16:03:21,164 INFO : 96% Done

11 May 2020 16:03:21,337 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:21,337 INFO : Inserting STAT3

11 May 2020 16:03:21,342 INFO : 97% Done

11 May 2020 16:03:21,559 INFO : 98% Done

11 May 2020 16:03:21,773 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:21,773 INFO : Done parsing Skyline document.

11 May 2020 16:03:21,775 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:03:21,939 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:03:22,705 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:03:22,933 INFO : Cleaning up temp tables

11 May 2020 16:03:22,947 INFO : Completed import of Skyline document from CPDR-FFPE-ID-322_2020-01-28_10-51-37.sky.zip

11 May 2020 16:03:22,948 INFO : 100% Done

11 May 2020 16:03:22,956 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80166/CPDR-FFPE-ID-322_2020-01-28_10-51-37.sky.zip into the system

11 May 2020 16:03:22,956 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80162/CPDR-FFPE-ID-359_2020-01-28_10-48-59/CPDR-FFPE-ID-359.skyd into the system

11 May 2020 16:03:22,957 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80162/CPDR-FFPE-ID-359_2020-01-28_10-48-59/CPDR-FFPE-ID-359.skyd into the system

11 May 2020 16:03:22,957 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80162/CPDR-FFPE-ID-359_2020-01-28_10-48-59.sky.zip into the system

11 May 2020 16:03:22,960 INFO : Starting import from CPDR-FFPE-ID-359_2020-01-28_10-48-59.sky.zip

11 May 2020 16:03:22,963 INFO : Starting to import Skyline document from CPDR-FFPE-ID-359_2020-01-28_10-48-59.sky.zip

11 May 2020 16:03:22,970 INFO : Expanding CPDR-FFPE-ID-359.skyd

11 May 2020 16:03:23,170 INFO : Expanding CPDR-FFPE-ID-359.sky.view

11 May 2020 16:03:23,171 INFO : Expanding CPDR-FFPE-ID-359.sky

11 May 2020 16:03:23,468 INFO : Inserting TFF3

11 May 2020 16:03:23,472 INFO : 1% Done

11 May 2020 16:03:23,568 INFO : 2% Done

11 May 2020 16:03:23,659 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:23,659 INFO : Inserting AKT1

11 May 2020 16:03:23,661 INFO : 3% Done

11 May 2020 16:03:23,733 INFO : 4% Done

11 May 2020 16:03:23,822 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:23,822 INFO : Inserting AMACR

11 May 2020 16:03:23,824 INFO : 5% Done

11 May 2020 16:03:23,920 INFO : 6% Done

11 May 2020 16:03:24,011 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:24,011 INFO : Inserting ANDR

11 May 2020 16:03:24,013 INFO : 7% Done

11 May 2020 16:03:24,448 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:24,448 INFO : Inserting ANXA2

11 May 2020 16:03:24,452 INFO : 8% Done

11 May 2020 16:03:24,669 INFO : 9% Done

11 May 2020 16:03:24,880 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:24,880 INFO : Inserting AURKA

11 May 2020 16:03:24,884 INFO : 10% Done

11 May 2020 16:03:25,125 INFO : 11% Done

11 May 2020 16:03:25,338 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:25,338 INFO : Inserting BRAF

11 May 2020 16:03:25,342 INFO : 12% Done

11 May 2020 16:03:25,558 INFO : 13% Done

11 May 2020 16:03:25,770 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:25,770 INFO : Inserting CAMKK2

11 May 2020 16:03:25,774 INFO : 14% Done

11 May 2020 16:03:26,060 INFO : 15% Done

11 May 2020 16:03:26,320 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:26,321 INFO : Inserting CCND1

11 May 2020 16:03:26,325 INFO : 16% Done

11 May 2020 16:03:26,546 INFO : 17% Done

11 May 2020 16:03:26,718 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:26,719 INFO : Inserting CDN1A

11 May 2020 16:03:26,935 INFO : 18% Done

11 May 2020 16:03:27,146 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:27,146 INFO : Inserting CRISP3

11 May 2020 16:03:27,150 INFO : 19% Done

11 May 2020 16:03:27,368 INFO : 20% Done

11 May 2020 16:03:27,583 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:27,584 INFO : Inserting DCOR

11 May 2020 16:03:27,588 INFO : 21% Done

11 May 2020 16:03:27,802 INFO : 22% Done

11 May 2020 16:03:28,022 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:28,023 INFO : Inserting EGFR

11 May 2020 16:03:28,027 INFO : 23% Done

11 May 2020 16:03:28,243 INFO : 24% Done

11 May 2020 16:03:28,419 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:28,420 INFO : Inserting EZH2

11 May 2020 16:03:28,424 INFO : 25% Done

11 May 2020 16:03:28,860 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:28,860 INFO : Inserting FGFR1

11 May 2020 16:03:29,077 INFO : 26% Done

11 May 2020 16:03:29,314 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:29,315 INFO : Inserting FOLH1

11 May 2020 16:03:29,319 INFO : 27% Done

11 May 2020 16:03:29,562 INFO : 28% Done

11 May 2020 16:03:29,802 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:29,802 INFO : Inserting HIF1A

11 May 2020 16:03:29,806 INFO : 29% Done

11 May 2020 16:03:30,052 INFO : 30% Done

11 May 2020 16:03:30,294 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:30,294 INFO : Inserting HPN

11 May 2020 16:03:30,298 INFO : 31% Done

11 May 2020 16:03:30,543 INFO : 32% Done

11 May 2020 16:03:30,784 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:30,784 INFO : Inserting HSPB1

11 May 2020 16:03:30,789 INFO : 33% Done

11 May 2020 16:03:31,032 INFO : 34% Done

11 May 2020 16:03:31,272 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:31,272 INFO : Inserting HXC6

11 May 2020 16:03:31,276 INFO : 35% Done

11 May 2020 16:03:31,521 INFO : 36% Done

11 May 2020 16:03:31,761 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:31,761 INFO : Inserting KLK11

11 May 2020 16:03:31,766 INFO : 37% Done

11 May 2020 16:03:32,351 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:32,351 INFO : Inserting KLK2

11 May 2020 16:03:32,355 INFO : 38% Done

11 May 2020 16:03:32,636 INFO : 39% Done

11 May 2020 16:03:32,878 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:32,878 INFO : Inserting MMP2

11 May 2020 16:03:32,882 INFO : 40% Done

11 May 2020 16:03:33,125 INFO : 41% Done

11 May 2020 16:03:33,316 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:33,316 INFO : Inserting MMP9

11 May 2020 16:03:33,321 INFO : 42% Done

11 May 2020 16:03:33,566 INFO : 43% Done

11 May 2020 16:03:33,806 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:33,806 INFO : Inserting MUC1

11 May 2020 16:03:33,810 INFO : 44% Done

11 May 2020 16:03:34,055 INFO : 45% Done

11 May 2020 16:03:34,299 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:34,299 INFO : Inserting MUC6

11 May 2020 16:03:34,548 INFO : 46% Done

11 May 2020 16:03:34,787 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:34,788 INFO : Inserting MYC

11 May 2020 16:03:34,792 INFO : 47% Done

11 May 2020 16:03:35,035 INFO : 48% Done

11 May 2020 16:03:35,278 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:35,278 INFO : Inserting MYCN

11 May 2020 16:03:35,282 INFO : 49% Done

11 May 2020 16:03:35,536 INFO : 50% Done

11 May 2020 16:03:35,775 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:35,775 INFO : Inserting MYO6

11 May 2020 16:03:35,780 INFO : 51% Done

11 May 2020 16:03:36,025 INFO : 52% Done

11 May 2020 16:03:36,266 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:36,266 INFO : Inserting NCOA2

11 May 2020 16:03:36,271 INFO : 53% Done

11 May 2020 16:03:36,516 INFO : 54% Done

11 May 2020 16:03:36,756 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:36,756 INFO : Inserting NPY

11 May 2020 16:03:36,761 INFO : 55% Done

11 May 2020 16:03:37,006 INFO : 56% Done

11 May 2020 16:03:37,246 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:37,247 INFO : Inserting O51E2

11 May 2020 16:03:37,445 INFO : 57% Done

11 May 2020 16:03:37,735 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:37,735 INFO : Inserting OSTP

11 May 2020 16:03:37,739 INFO : 58% Done

11 May 2020 16:03:38,050 INFO : 59% Done

11 May 2020 16:03:38,292 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:38,292 INFO : Inserting P53

11 May 2020 16:03:38,297 INFO : 60% Done

11 May 2020 16:03:38,539 INFO : 61% Done

11 May 2020 16:03:38,744 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:38,745 INFO : Inserting PAFA

11 May 2020 16:03:38,748 INFO : 62% Done

11 May 2020 16:03:38,956 INFO : 63% Done

11 May 2020 16:03:39,172 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:39,172 INFO : Inserting PGFRB

11 May 2020 16:03:39,176 INFO : 64% Done

11 May 2020 16:03:39,587 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:39,587 INFO : Inserting PK3CA

11 May 2020 16:03:39,592 INFO : 65% Done

11 May 2020 16:03:39,834 INFO : 66% Done

11 May 2020 16:03:40,075 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:40,075 INFO : Inserting RAF1

11 May 2020 16:03:40,079 INFO : 67% Done

11 May 2020 16:03:40,323 INFO : 68% Done

11 May 2020 16:03:40,515 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:40,515 INFO : Inserting SERPINI1

11 May 2020 16:03:40,519 INFO : 69% Done

11 May 2020 16:03:40,765 INFO : 70% Done

11 May 2020 16:03:41,004 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:41,004 INFO : Inserting SPINK1

11 May 2020 16:03:41,009 INFO : 71% Done

11 May 2020 16:03:41,253 INFO : 72% Done

11 May 2020 16:03:41,495 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:41,495 INFO : Inserting SPRC

11 May 2020 16:03:41,743 INFO : 73% Done

11 May 2020 16:03:41,986 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:41,986 INFO : Inserting TGFB1

11 May 2020 16:03:41,991 INFO : 74% Done

11 May 2020 16:03:42,477 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:42,477 INFO : Inserting TMPS2

11 May 2020 16:03:42,482 INFO : 75% Done

11 May 2020 16:03:42,724 INFO : 76% Done

11 May 2020 16:03:42,963 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:42,963 INFO : Inserting TPM2

11 May 2020 16:03:42,968 INFO : 77% Done

11 May 2020 16:03:43,214 INFO : 78% Done

11 May 2020 16:03:43,452 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:43,452 INFO : Inserting TWST1

11 May 2020 16:03:43,457 INFO : 79% Done

11 May 2020 16:03:43,699 INFO : 80% Done

11 May 2020 16:03:43,937 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:43,937 INFO : Inserting VEGFA

11 May 2020 16:03:43,941 INFO : 81% Done

11 May 2020 16:03:44,184 INFO : 82% Done

11 May 2020 16:03:44,426 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:44,426 INFO : Inserting PSA

11 May 2020 16:03:44,431 INFO : 83% Done

11 May 2020 16:03:44,674 INFO : 84% Done

11 May 2020 16:03:44,912 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:44,912 INFO : Inserting ERG_pan

11 May 2020 16:03:45,160 INFO : 85% Done

11 May 2020 16:03:45,405 INFO : 86% Done

11 May 2020 16:03:45,647 INFO : 87% Done

11 May 2020 16:03:45,891 INFO : 88% Done

11 May 2020 16:03:46,134 INFO : 89% Done

11 May 2020 16:03:46,377 INFO : 90% Done

11 May 2020 16:03:46,616 DEBUG: Total peptides inserted: 7

11 May 2020 16:03:46,617 INFO : Inserting ETV1

11 May 2020 16:03:46,621 INFO : 91% Done

11 May 2020 16:03:46,863 INFO : 92% Done

11 May 2020 16:03:47,105 INFO : 93% Done

11 May 2020 16:03:47,345 DEBUG: Total peptides inserted: 3

11 May 2020 16:03:47,345 INFO : Inserting ERG8

11 May 2020 16:03:47,349 INFO : 94% Done

11 May 2020 16:03:47,592 INFO : 95% Done

11 May 2020 16:03:47,831 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:47,831 INFO : Inserting SMAD4

11 May 2020 16:03:47,835 INFO : 96% Done

11 May 2020 16:03:48,281 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:48,281 INFO : Inserting STAT3

11 May 2020 16:03:48,286 INFO : 97% Done

11 May 2020 16:03:48,530 INFO : 98% Done

11 May 2020 16:03:48,771 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:48,771 INFO : Done parsing Skyline document.

11 May 2020 16:03:48,773 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:03:48,933 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:03:49,704 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:03:49,910 INFO : Cleaning up temp tables

11 May 2020 16:03:50,288 INFO : Completed import of Skyline document from CPDR-FFPE-ID-359_2020-01-28_10-48-59.sky.zip

11 May 2020 16:03:50,289 INFO : 100% Done

11 May 2020 16:03:50,295 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80162/CPDR-FFPE-ID-359_2020-01-28_10-48-59.sky.zip into the system

11 May 2020 16:03:50,295 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80161/CPDR-FFPE-ID-355_2020-01-28_10-48-20/CPDR-FFPE-ID-355.skyd into the system

11 May 2020 16:03:50,295 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80161/CPDR-FFPE-ID-355_2020-01-28_10-48-20/CPDR-FFPE-ID-355.skyd into the system

11 May 2020 16:03:50,295 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80161/CPDR-FFPE-ID-355_2020-01-28_10-48-20.sky.zip into the system

11 May 2020 16:03:50,298 INFO : Starting import from CPDR-FFPE-ID-355_2020-01-28_10-48-20.sky.zip

11 May 2020 16:03:50,301 INFO : Starting to import Skyline document from CPDR-FFPE-ID-355_2020-01-28_10-48-20.sky.zip

11 May 2020 16:03:50,311 INFO : Expanding CPDR-FFPE-ID-355.skyd

11 May 2020 16:03:50,536 INFO : Expanding CPDR-FFPE-ID-355.sky.view

11 May 2020 16:03:50,537 INFO : Expanding CPDR-FFPE-ID-355.sky

11 May 2020 16:03:51,144 INFO : Inserting TFF3

11 May 2020 16:03:51,148 INFO : 1% Done

11 May 2020 16:03:51,250 INFO : 2% Done

11 May 2020 16:03:51,347 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:51,347 INFO : Inserting AKT1

11 May 2020 16:03:51,349 INFO : 3% Done

11 May 2020 16:03:51,427 INFO : 4% Done

11 May 2020 16:03:51,525 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:51,525 INFO : Inserting AMACR

11 May 2020 16:03:51,530 INFO : 5% Done

11 May 2020 16:03:51,772 INFO : 6% Done

11 May 2020 16:03:52,012 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:52,012 INFO : Inserting ANDR

11 May 2020 16:03:52,017 INFO : 7% Done

11 May 2020 16:03:52,501 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:52,501 INFO : Inserting ANXA2

11 May 2020 16:03:52,506 INFO : 8% Done

11 May 2020 16:03:52,755 INFO : 9% Done

11 May 2020 16:03:52,999 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:53,000 INFO : Inserting AURKA

11 May 2020 16:03:53,004 INFO : 10% Done

11 May 2020 16:03:53,247 INFO : 11% Done

11 May 2020 16:03:53,489 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:53,489 INFO : Inserting BRAF

11 May 2020 16:03:53,494 INFO : 12% Done

11 May 2020 16:03:53,738 INFO : 13% Done

11 May 2020 16:03:53,983 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:53,983 INFO : Inserting CAMKK2

11 May 2020 16:03:53,988 INFO : 14% Done

11 May 2020 16:03:54,234 INFO : 15% Done

11 May 2020 16:03:54,473 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:54,473 INFO : Inserting CCND1

11 May 2020 16:03:54,477 INFO : 16% Done

11 May 2020 16:03:54,722 INFO : 17% Done

11 May 2020 16:03:54,917 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:54,917 INFO : Inserting CDN1A

11 May 2020 16:03:55,166 INFO : 18% Done

11 May 2020 16:03:55,405 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:55,405 INFO : Inserting CRISP3

11 May 2020 16:03:55,410 INFO : 19% Done

11 May 2020 16:03:55,654 INFO : 20% Done

11 May 2020 16:03:55,900 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:55,900 INFO : Inserting DCOR

11 May 2020 16:03:55,905 INFO : 21% Done

11 May 2020 16:03:56,148 INFO : 22% Done

11 May 2020 16:03:56,388 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:56,388 INFO : Inserting EGFR

11 May 2020 16:03:56,393 INFO : 23% Done

11 May 2020 16:03:56,636 INFO : 24% Done

11 May 2020 16:03:56,832 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:56,832 INFO : Inserting EZH2

11 May 2020 16:03:56,836 INFO : 25% Done

11 May 2020 16:03:57,322 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:57,322 INFO : Inserting FGFR1

11 May 2020 16:03:57,569 INFO : 26% Done

11 May 2020 16:03:57,811 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:57,811 INFO : Inserting FOLH1

11 May 2020 16:03:57,816 INFO : 27% Done

11 May 2020 16:03:58,058 INFO : 28% Done

11 May 2020 16:03:58,297 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:58,297 INFO : Inserting HIF1A

11 May 2020 16:03:58,302 INFO : 29% Done

11 May 2020 16:03:58,543 INFO : 30% Done

11 May 2020 16:03:58,783 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:58,783 INFO : Inserting HPN

11 May 2020 16:03:58,787 INFO : 31% Done

11 May 2020 16:03:59,032 INFO : 32% Done

11 May 2020 16:03:59,274 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:59,275 INFO : Inserting HSPB1

11 May 2020 16:03:59,279 INFO : 33% Done

11 May 2020 16:03:59,523 INFO : 34% Done

11 May 2020 16:03:59,776 DEBUG: Total peptides inserted: 2

11 May 2020 16:03:59,776 INFO : Inserting HXC6

11 May 2020 16:03:59,781 INFO : 35% Done

11 May 2020 16:04:00,026 INFO : 36% Done

11 May 2020 16:04:00,269 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:00,269 INFO : Inserting KLK11

11 May 2020 16:04:00,518 INFO : 37% Done

11 May 2020 16:04:00,828 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:00,828 INFO : Inserting KLK2

11 May 2020 16:04:00,832 INFO : 38% Done

11 May 2020 16:04:01,077 INFO : 39% Done

11 May 2020 16:04:01,322 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:01,322 INFO : Inserting MMP2

11 May 2020 16:04:01,327 INFO : 40% Done

11 May 2020 16:04:01,592 INFO : 41% Done

11 May 2020 16:04:01,804 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:01,805 INFO : Inserting MMP9

11 May 2020 16:04:01,810 INFO : 42% Done

11 May 2020 16:04:02,028 INFO : 43% Done

11 May 2020 16:04:02,269 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:02,269 INFO : Inserting MUC1

11 May 2020 16:04:02,273 INFO : 44% Done

11 May 2020 16:04:02,489 INFO : 45% Done

11 May 2020 16:04:02,718 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:02,719 INFO : Inserting MUC6

11 May 2020 16:04:02,723 INFO : 46% Done

11 May 2020 16:04:03,214 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:03,214 INFO : Inserting MYC

11 May 2020 16:04:03,218 INFO : 47% Done

11 May 2020 16:04:03,460 INFO : 48% Done

11 May 2020 16:04:03,685 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:03,686 INFO : Inserting MYCN

11 May 2020 16:04:03,690 INFO : 49% Done

11 May 2020 16:04:03,914 INFO : 50% Done

11 May 2020 16:04:04,130 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:04,130 INFO : Inserting MYO6

11 May 2020 16:04:04,136 INFO : 51% Done

11 May 2020 16:04:04,393 INFO : 52% Done

11 May 2020 16:04:04,604 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:04,604 INFO : Inserting NCOA2

11 May 2020 16:04:04,608 INFO : 53% Done

11 May 2020 16:04:04,822 INFO : 54% Done

11 May 2020 16:04:05,033 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:05,034 INFO : Inserting NPY

11 May 2020 16:04:05,038 INFO : 55% Done

11 May 2020 16:04:05,257 INFO : 56% Done

11 May 2020 16:04:05,471 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:05,472 INFO : Inserting O51E2

11 May 2020 16:04:05,650 INFO : 57% Done

11 May 2020 16:04:05,870 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:05,870 INFO : Inserting OSTP

11 May 2020 16:04:05,875 INFO : 58% Done

11 May 2020 16:04:06,096 INFO : 59% Done

11 May 2020 16:04:06,313 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:06,314 INFO : Inserting P53

11 May 2020 16:04:06,318 INFO : 60% Done

11 May 2020 16:04:06,537 INFO : 61% Done

11 May 2020 16:04:06,751 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:06,752 INFO : Inserting PAFA

11 May 2020 16:04:06,756 INFO : 62% Done

11 May 2020 16:04:06,973 INFO : 63% Done

11 May 2020 16:04:07,187 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:07,187 INFO : Inserting PGFRB

11 May 2020 16:04:07,366 INFO : 64% Done

11 May 2020 16:04:07,582 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:07,582 INFO : Inserting PK3CA

11 May 2020 16:04:07,587 INFO : 65% Done

11 May 2020 16:04:07,870 INFO : 66% Done

11 May 2020 16:04:08,090 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:08,091 INFO : Inserting RAF1

11 May 2020 16:04:08,095 INFO : 67% Done

11 May 2020 16:04:08,316 INFO : 68% Done

11 May 2020 16:04:08,489 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:08,489 INFO : Inserting SERPINI1

11 May 2020 16:04:08,494 INFO : 69% Done

11 May 2020 16:04:08,715 INFO : 70% Done

11 May 2020 16:04:08,927 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:08,927 INFO : Inserting SPINK1

11 May 2020 16:04:08,932 INFO : 71% Done

11 May 2020 16:04:09,165 INFO : 72% Done

11 May 2020 16:04:09,385 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:09,385 INFO : Inserting SPRC

11 May 2020 16:04:09,621 INFO : 73% Done

11 May 2020 16:04:09,818 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:09,819 INFO : Inserting TGFB1

11 May 2020 16:04:09,823 INFO : 74% Done

11 May 2020 16:04:10,453 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:10,453 INFO : Inserting TMPS2

11 May 2020 16:04:10,457 INFO : 75% Done

11 May 2020 16:04:10,675 INFO : 76% Done

11 May 2020 16:04:10,917 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:10,917 INFO : Inserting TPM2

11 May 2020 16:04:10,925 INFO : 77% Done

11 May 2020 16:04:11,153 INFO : 78% Done

11 May 2020 16:04:11,367 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:11,367 INFO : Inserting TWST1

11 May 2020 16:04:11,371 INFO : 79% Done

11 May 2020 16:04:11,590 INFO : 80% Done

11 May 2020 16:04:11,802 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:11,802 INFO : Inserting VEGFA

11 May 2020 16:04:11,806 INFO : 81% Done

11 May 2020 16:04:12,026 INFO : 82% Done

11 May 2020 16:04:12,288 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:12,288 INFO : Inserting PSA

11 May 2020 16:04:12,292 INFO : 83% Done

11 May 2020 16:04:12,743 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:12,743 INFO : Inserting ERG_pan

11 May 2020 16:04:12,747 INFO : 84% Done

11 May 2020 16:04:12,970 INFO : 85% Done

11 May 2020 16:04:13,193 INFO : 86% Done

11 May 2020 16:04:13,419 INFO : 87% Done

11 May 2020 16:04:13,643 INFO : 88% Done

11 May 2020 16:04:13,863 INFO : 89% Done

11 May 2020 16:04:14,087 INFO : 90% Done

11 May 2020 16:04:14,301 DEBUG: Total peptides inserted: 7

11 May 2020 16:04:14,301 INFO : Inserting ETV1

11 May 2020 16:04:14,305 INFO : 91% Done

11 May 2020 16:04:14,525 INFO : 92% Done

11 May 2020 16:04:14,746 INFO : 93% Done

11 May 2020 16:04:14,961 DEBUG: Total peptides inserted: 3

11 May 2020 16:04:14,961 INFO : Inserting ERG8

11 May 2020 16:04:14,966 INFO : 94% Done

11 May 2020 16:04:15,184 INFO : 95% Done

11 May 2020 16:04:15,401 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:15,401 INFO : Inserting SMAD4

11 May 2020 16:04:15,666 INFO : 96% Done

11 May 2020 16:04:15,843 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:15,844 INFO : Inserting STAT3

11 May 2020 16:04:15,848 INFO : 97% Done

11 May 2020 16:04:16,071 INFO : 98% Done

11 May 2020 16:04:16,363 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:16,363 INFO : Done parsing Skyline document.

11 May 2020 16:04:16,366 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:04:16,521 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:04:17,267 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:04:17,553 INFO : Cleaning up temp tables

11 May 2020 16:04:18,043 INFO : Completed import of Skyline document from CPDR-FFPE-ID-355_2020-01-28_10-48-20.sky.zip

11 May 2020 16:04:18,045 INFO : 100% Done

11 May 2020 16:04:18,057 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80161/CPDR-FFPE-ID-355_2020-01-28_10-48-20.sky.zip into the system

11 May 2020 16:04:18,058 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80160/CPDR-FFPE-ID-334_2020-01-28_10-47-35/CPDR-FFPE-ID-334.skyd into the system

11 May 2020 16:04:18,059 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80160/CPDR-FFPE-ID-334_2020-01-28_10-47-35/CPDR-FFPE-ID-334.skyd into the system

11 May 2020 16:04:18,059 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80160/CPDR-FFPE-ID-334_2020-01-28_10-47-35.sky.zip into the system

11 May 2020 16:04:18,063 INFO : Starting import from CPDR-FFPE-ID-334_2020-01-28_10-47-35.sky.zip

11 May 2020 16:04:18,072 INFO : Starting to import Skyline document from CPDR-FFPE-ID-334_2020-01-28_10-47-35.sky.zip

11 May 2020 16:04:18,089 INFO : Expanding CPDR-FFPE-ID-334.skyd

11 May 2020 16:04:18,545 INFO : Expanding CPDR-FFPE-ID-334.sky.view

11 May 2020 16:04:18,546 INFO : Expanding CPDR-FFPE-ID-334.sky

11 May 2020 16:04:19,322 INFO : Inserting TFF3

11 May 2020 16:04:19,329 INFO : 1% Done

11 May 2020 16:04:19,561 INFO : 2% Done

11 May 2020 16:04:19,783 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:19,783 INFO : Inserting AKT1

11 May 2020 16:04:19,788 INFO : 3% Done

11 May 2020 16:04:19,957 INFO : 4% Done

11 May 2020 16:04:20,164 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:20,164 INFO : Inserting AMACR

11 May 2020 16:04:20,168 INFO : 5% Done

11 May 2020 16:04:20,379 INFO : 6% Done

11 May 2020 16:04:20,586 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:20,587 INFO : Inserting ANDR

11 May 2020 16:04:20,591 INFO : 7% Done

11 May 2020 16:04:21,019 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:21,020 INFO : Inserting ANXA2

11 May 2020 16:04:21,024 INFO : 8% Done

11 May 2020 16:04:21,237 INFO : 9% Done

11 May 2020 16:04:21,452 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:21,452 INFO : Inserting AURKA

11 May 2020 16:04:21,457 INFO : 10% Done

11 May 2020 16:04:21,674 INFO : 11% Done

11 May 2020 16:04:21,887 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:21,887 INFO : Inserting BRAF

11 May 2020 16:04:21,892 INFO : 12% Done

11 May 2020 16:04:22,112 INFO : 13% Done

11 May 2020 16:04:22,327 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:22,328 INFO : Inserting CAMKK2

11 May 2020 16:04:22,332 INFO : 14% Done

11 May 2020 16:04:22,550 INFO : 15% Done

11 May 2020 16:04:22,761 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:22,761 INFO : Inserting CCND1

11 May 2020 16:04:22,766 INFO : 16% Done

11 May 2020 16:04:22,979 INFO : 17% Done

11 May 2020 16:04:23,147 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:23,147 INFO : Inserting CDN1A

11 May 2020 16:04:23,368 INFO : 18% Done

11 May 2020 16:04:23,580 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:23,580 INFO : Inserting CRISP3

11 May 2020 16:04:23,585 INFO : 19% Done

11 May 2020 16:04:23,802 INFO : 20% Done

11 May 2020 16:04:24,011 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:24,011 INFO : Inserting DCOR

11 May 2020 16:04:24,015 INFO : 21% Done

11 May 2020 16:04:24,249 INFO : 22% Done

11 May 2020 16:04:24,468 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:24,468 INFO : Inserting EGFR

11 May 2020 16:04:24,473 INFO : 23% Done

11 May 2020 16:04:24,701 INFO : 24% Done

11 May 2020 16:04:25,001 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:25,001 INFO : Inserting EZH2

11 May 2020 16:04:25,006 INFO : 25% Done

11 May 2020 16:04:25,435 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:25,436 INFO : Inserting FGFR1

11 May 2020 16:04:25,651 INFO : 26% Done

11 May 2020 16:04:25,859 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:25,859 INFO : Inserting FOLH1

11 May 2020 16:04:25,863 INFO : 27% Done

11 May 2020 16:04:26,091 INFO : 28% Done

11 May 2020 16:04:26,333 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:26,333 INFO : Inserting HIF1A

11 May 2020 16:04:26,337 INFO : 29% Done

11 May 2020 16:04:26,549 INFO : 30% Done

11 May 2020 16:04:26,780 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:26,781 INFO : Inserting HPN

11 May 2020 16:04:26,785 INFO : 31% Done

11 May 2020 16:04:27,005 INFO : 32% Done

11 May 2020 16:04:27,226 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:27,226 INFO : Inserting HSPB1

11 May 2020 16:04:27,231 INFO : 33% Done

11 May 2020 16:04:27,443 INFO : 34% Done

11 May 2020 16:04:27,652 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:27,652 INFO : Inserting HXC6

11 May 2020 16:04:27,656 INFO : 35% Done

11 May 2020 16:04:27,870 INFO : 36% Done

11 May 2020 16:04:28,080 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:28,081 INFO : Inserting KLK11

11 May 2020 16:04:28,296 INFO : 37% Done

11 May 2020 16:04:28,515 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:28,515 INFO : Inserting KLK2

11 May 2020 16:04:28,520 INFO : 38% Done

11 May 2020 16:04:28,761 INFO : 39% Done

11 May 2020 16:04:28,977 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:28,978 INFO : Inserting MMP2

11 May 2020 16:04:28,982 INFO : 40% Done

11 May 2020 16:04:29,197 INFO : 41% Done

11 May 2020 16:04:29,366 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:29,366 INFO : Inserting MMP9

11 May 2020 16:04:29,371 INFO : 42% Done

11 May 2020 16:04:29,560 INFO : 43% Done

11 May 2020 16:04:29,682 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:29,682 INFO : Inserting MUC1

11 May 2020 16:04:29,686 INFO : 44% Done

11 May 2020 16:04:29,811 INFO : 45% Done

11 May 2020 16:04:29,933 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:29,933 INFO : Inserting MUC6

11 May 2020 16:04:30,083 INFO : 46% Done

11 May 2020 16:04:30,290 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:30,291 INFO : Inserting MYC

11 May 2020 16:04:30,295 INFO : 47% Done

11 May 2020 16:04:30,516 INFO : 48% Done

11 May 2020 16:04:30,735 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:30,735 INFO : Inserting MYCN

11 May 2020 16:04:30,740 INFO : 49% Done

11 May 2020 16:04:30,956 INFO : 50% Done

11 May 2020 16:04:31,166 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:31,166 INFO : Inserting MYO6

11 May 2020 16:04:31,171 INFO : 51% Done

11 May 2020 16:04:31,406 INFO : 52% Done

11 May 2020 16:04:31,625 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:31,625 INFO : Inserting NCOA2

11 May 2020 16:04:31,630 INFO : 53% Done

11 May 2020 16:04:31,852 INFO : 54% Done

11 May 2020 16:04:32,094 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:32,095 INFO : Inserting NPY

11 May 2020 16:04:32,099 INFO : 55% Done

11 May 2020 16:04:32,352 INFO : 56% Done

11 May 2020 16:04:32,587 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:32,587 INFO : Inserting O51E2

11 May 2020 16:04:32,785 INFO : 57% Done

11 May 2020 16:04:33,024 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:33,024 INFO : Inserting OSTP

11 May 2020 16:04:33,029 INFO : 58% Done

11 May 2020 16:04:33,281 INFO : 59% Done

11 May 2020 16:04:33,532 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:33,532 INFO : Inserting P53

11 May 2020 16:04:33,537 INFO : 60% Done

11 May 2020 16:04:33,776 INFO : 61% Done

11 May 2020 16:04:34,012 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:34,012 INFO : Inserting PAFA

11 May 2020 16:04:34,017 INFO : 62% Done

11 May 2020 16:04:34,262 INFO : 63% Done

11 May 2020 16:04:34,512 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:34,512 INFO : Inserting PGFRB

11 May 2020 16:04:34,703 INFO : 64% Done

11 May 2020 16:04:34,935 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:34,935 INFO : Inserting PK3CA

11 May 2020 16:04:34,940 INFO : 65% Done

11 May 2020 16:04:35,175 INFO : 66% Done

11 May 2020 16:04:35,412 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:35,413 INFO : Inserting RAF1

11 May 2020 16:04:35,417 INFO : 67% Done

11 May 2020 16:04:35,658 INFO : 68% Done

11 May 2020 16:04:35,848 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:35,848 INFO : Inserting SERPINI1

11 May 2020 16:04:35,852 INFO : 69% Done

11 May 2020 16:04:36,094 INFO : 70% Done

11 May 2020 16:04:36,333 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:36,333 INFO : Inserting SPINK1

11 May 2020 16:04:36,337 INFO : 71% Done

11 May 2020 16:04:36,581 INFO : 72% Done

11 May 2020 16:04:36,829 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:36,829 INFO : Inserting SPRC

11 May 2020 16:04:37,076 INFO : 73% Done

11 May 2020 16:04:37,329 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:37,330 INFO : Inserting TGFB1

11 May 2020 16:04:37,334 INFO : 74% Done

11 May 2020 16:04:37,829 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:37,829 INFO : Inserting TMPS2

11 May 2020 16:04:37,833 INFO : 75% Done

11 May 2020 16:04:38,074 INFO : 76% Done

11 May 2020 16:04:38,312 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:38,313 INFO : Inserting TPM2

11 May 2020 16:04:38,317 INFO : 77% Done

11 May 2020 16:04:38,560 INFO : 78% Done

11 May 2020 16:04:38,799 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:38,799 INFO : Inserting TWST1

11 May 2020 16:04:38,804 INFO : 79% Done

11 May 2020 16:04:39,047 INFO : 80% Done

11 May 2020 16:04:39,304 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:39,304 INFO : Inserting VEGFA

11 May 2020 16:04:39,309 INFO : 81% Done

11 May 2020 16:04:39,599 INFO : 82% Done

11 May 2020 16:04:39,840 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:39,840 INFO : Inserting PSA

11 May 2020 16:04:39,844 INFO : 83% Done

11 May 2020 16:04:40,356 INFO : 84% Done

11 May 2020 16:04:40,594 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:40,594 INFO : Inserting ERG_pan

11 May 2020 16:04:40,839 INFO : 85% Done

11 May 2020 16:04:41,082 INFO : 86% Done

11 May 2020 16:04:41,326 INFO : 87% Done

11 May 2020 16:04:41,585 INFO : 88% Done

11 May 2020 16:04:41,837 INFO : 89% Done

11 May 2020 16:04:42,077 INFO : 90% Done

11 May 2020 16:04:42,390 DEBUG: Total peptides inserted: 7

11 May 2020 16:04:42,390 INFO : Inserting ETV1

11 May 2020 16:04:42,395 INFO : 91% Done

11 May 2020 16:04:42,636 INFO : 92% Done

11 May 2020 16:04:42,879 INFO : 93% Done

11 May 2020 16:04:43,120 DEBUG: Total peptides inserted: 3

11 May 2020 16:04:43,120 INFO : Inserting ERG8

11 May 2020 16:04:43,125 INFO : 94% Done

11 May 2020 16:04:43,352 INFO : 95% Done

11 May 2020 16:04:43,587 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:43,587 INFO : Inserting SMAD4

11 May 2020 16:04:43,830 INFO : 96% Done

11 May 2020 16:04:44,022 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:44,022 INFO : Inserting STAT3

11 May 2020 16:04:44,027 INFO : 97% Done

11 May 2020 16:04:44,259 INFO : 98% Done

11 May 2020 16:04:44,471 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:44,471 INFO : Done parsing Skyline document.

11 May 2020 16:04:44,474 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:04:44,688 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:04:45,309 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:04:45,499 INFO : Cleaning up temp tables

11 May 2020 16:04:46,046 INFO : Completed import of Skyline document from CPDR-FFPE-ID-334_2020-01-28_10-47-35.sky.zip

11 May 2020 16:04:46,048 INFO : 100% Done

11 May 2020 16:04:46,060 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80160/CPDR-FFPE-ID-334_2020-01-28_10-47-35.sky.zip into the system

11 May 2020 16:04:46,060 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80146/CPDR-FFPE-ID-338_2020-01-28_10-39-03/CPDR-FFPE-ID-338.skyd into the system

11 May 2020 16:04:46,062 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80146/CPDR-FFPE-ID-338_2020-01-28_10-39-03/CPDR-FFPE-ID-338.skyd into the system

11 May 2020 16:04:46,062 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80146/CPDR-FFPE-ID-338_2020-01-28_10-39-03.sky.zip into the system

11 May 2020 16:04:46,066 INFO : Starting import from CPDR-FFPE-ID-338_2020-01-28_10-39-03.sky.zip

11 May 2020 16:04:46,073 INFO : Starting to import Skyline document from CPDR-FFPE-ID-338_2020-01-28_10-39-03.sky.zip

11 May 2020 16:04:46,089 INFO : Expanding CPDR-FFPE-ID-338.skyd

11 May 2020 16:04:46,531 INFO : Expanding CPDR-FFPE-ID-338.sky.view

11 May 2020 16:04:46,531 INFO : Expanding CPDR-FFPE-ID-338.sky

11 May 2020 16:04:47,124 INFO : Inserting TFF3

11 May 2020 16:04:47,131 INFO : 1% Done

11 May 2020 16:04:47,313 INFO : 2% Done

11 May 2020 16:04:47,463 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:47,463 INFO : Inserting AKT1

11 May 2020 16:04:47,467 INFO : 3% Done

11 May 2020 16:04:47,618 INFO : 4% Done

11 May 2020 16:04:47,818 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:47,818 INFO : Inserting AMACR

11 May 2020 16:04:47,822 INFO : 5% Done

11 May 2020 16:04:48,027 INFO : 6% Done

11 May 2020 16:04:48,232 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:48,232 INFO : Inserting ANDR

11 May 2020 16:04:48,237 INFO : 7% Done

11 May 2020 16:04:49,459 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:49,459 INFO : 8% Done

11 May 2020 16:04:49,459 INFO : Inserting ANXA2

11 May 2020 16:04:49,697 INFO : 9% Done

11 May 2020 16:04:49,927 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:49,927 INFO : Inserting AURKA

11 May 2020 16:04:49,932 INFO : 10% Done

11 May 2020 16:04:50,162 INFO : 11% Done

11 May 2020 16:04:50,392 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:50,392 INFO : Inserting BRAF

11 May 2020 16:04:50,397 INFO : 12% Done

11 May 2020 16:04:50,629 INFO : 13% Done

11 May 2020 16:04:50,857 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:50,857 INFO : Inserting CAMKK2

11 May 2020 16:04:50,862 INFO : 14% Done

11 May 2020 16:04:51,110 INFO : 15% Done

11 May 2020 16:04:51,341 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:51,341 INFO : Inserting CCND1

11 May 2020 16:04:51,346 INFO : 16% Done

11 May 2020 16:04:51,579 INFO : 17% Done

11 May 2020 16:04:51,774 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:51,775 INFO : Inserting CDN1A

11 May 2020 16:04:52,017 INFO : 18% Done

11 May 2020 16:04:52,244 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:52,245 INFO : Inserting CRISP3

11 May 2020 16:04:52,249 INFO : 19% Done

11 May 2020 16:04:52,482 INFO : 20% Done

11 May 2020 16:04:52,713 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:52,713 INFO : Inserting DCOR

11 May 2020 16:04:52,717 INFO : 21% Done

11 May 2020 16:04:52,948 INFO : 22% Done

11 May 2020 16:04:53,180 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:53,180 INFO : Inserting EGFR

11 May 2020 16:04:53,184 INFO : 23% Done

11 May 2020 16:04:53,400 INFO : 24% Done

11 May 2020 16:04:53,572 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:53,572 INFO : Inserting EZH2

11 May 2020 16:04:53,577 INFO : 25% Done

11 May 2020 16:04:53,980 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:53,980 INFO : Inserting FGFR1

11 May 2020 16:04:54,186 INFO : 26% Done

11 May 2020 16:04:54,387 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:54,387 INFO : Inserting FOLH1

11 May 2020 16:04:54,391 INFO : 27% Done

11 May 2020 16:04:54,620 INFO : 28% Done

11 May 2020 16:04:54,854 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:54,855 INFO : Inserting HIF1A

11 May 2020 16:04:54,860 INFO : 29% Done

11 May 2020 16:04:55,076 INFO : 30% Done

11 May 2020 16:04:55,326 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:55,326 INFO : Inserting HPN

11 May 2020 16:04:55,330 INFO : 31% Done

11 May 2020 16:04:55,542 INFO : 32% Done

11 May 2020 16:04:55,750 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:55,750 INFO : Inserting HSPB1

11 May 2020 16:04:55,755 INFO : 33% Done

11 May 2020 16:04:55,975 INFO : 34% Done

11 May 2020 16:04:56,187 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:56,187 INFO : Inserting HXC6

11 May 2020 16:04:56,191 INFO : 35% Done

11 May 2020 16:04:56,393 INFO : 36% Done

11 May 2020 16:04:56,591 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:56,591 INFO : Inserting KLK11

11 May 2020 16:04:56,596 INFO : 37% Done

11 May 2020 16:04:57,004 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:57,004 INFO : Inserting KLK2

11 May 2020 16:04:57,008 INFO : 38% Done

11 May 2020 16:04:57,212 INFO : 39% Done

11 May 2020 16:04:57,416 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:57,416 INFO : Inserting MMP2

11 May 2020 16:04:57,421 INFO : 40% Done

11 May 2020 16:04:57,660 INFO : 41% Done

11 May 2020 16:04:57,819 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:57,819 INFO : Inserting MMP9

11 May 2020 16:04:57,823 INFO : 42% Done

11 May 2020 16:04:58,024 INFO : 43% Done

11 May 2020 16:04:58,251 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:58,252 INFO : Inserting MUC1

11 May 2020 16:04:58,256 INFO : 44% Done

11 May 2020 16:04:58,460 INFO : 45% Done

11 May 2020 16:04:58,660 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:58,660 INFO : Inserting MUC6

11 May 2020 16:04:58,868 INFO : 46% Done

11 May 2020 16:04:59,067 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:59,068 INFO : Inserting MYC

11 May 2020 16:04:59,072 INFO : 47% Done

11 May 2020 16:04:59,277 INFO : 48% Done

11 May 2020 16:04:59,479 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:59,479 INFO : Inserting MYCN

11 May 2020 16:04:59,483 INFO : 49% Done

11 May 2020 16:04:59,691 INFO : 50% Done

11 May 2020 16:04:59,892 DEBUG: Total peptides inserted: 2

11 May 2020 16:04:59,892 INFO : Inserting MYO6

11 May 2020 16:04:59,896 INFO : 51% Done

11 May 2020 16:05:00,097 INFO : 52% Done

11 May 2020 16:05:00,297 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:00,297 INFO : Inserting NCOA2

11 May 2020 16:05:00,302 INFO : 53% Done

11 May 2020 16:05:00,504 INFO : 54% Done

11 May 2020 16:05:00,703 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:00,704 INFO : Inserting NPY

11 May 2020 16:05:00,708 INFO : 55% Done

11 May 2020 16:05:00,923 INFO : 56% Done

11 May 2020 16:05:01,122 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:01,123 INFO : Inserting O51E2

11 May 2020 16:05:01,291 INFO : 57% Done

11 May 2020 16:05:01,492 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:01,492 INFO : Inserting OSTP

11 May 2020 16:05:01,497 INFO : 58% Done

11 May 2020 16:05:01,704 INFO : 59% Done

11 May 2020 16:05:01,918 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:01,918 INFO : Inserting P53

11 May 2020 16:05:01,923 INFO : 60% Done

11 May 2020 16:05:02,150 INFO : 61% Done

11 May 2020 16:05:02,384 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:02,384 INFO : Inserting PAFA

11 May 2020 16:05:02,388 INFO : 62% Done

11 May 2020 16:05:02,615 INFO : 63% Done

11 May 2020 16:05:02,891 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:02,891 INFO : Inserting PGFRB

11 May 2020 16:05:03,057 INFO : 64% Done

11 May 2020 16:05:03,259 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:03,259 INFO : Inserting PK3CA

11 May 2020 16:05:03,264 INFO : 65% Done

11 May 2020 16:05:03,464 INFO : 66% Done

11 May 2020 16:05:03,663 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:03,663 INFO : Inserting RAF1

11 May 2020 16:05:03,667 INFO : 67% Done

11 May 2020 16:05:03,891 INFO : 68% Done

11 May 2020 16:05:04,055 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:04,055 INFO : Inserting SERPINI1

11 May 2020 16:05:04,059 INFO : 69% Done

11 May 2020 16:05:04,270 INFO : 70% Done

11 May 2020 16:05:04,470 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:04,470 INFO : Inserting SPINK1

11 May 2020 16:05:04,485 INFO : 71% Done

11 May 2020 16:05:04,688 INFO : 72% Done

11 May 2020 16:05:04,885 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:04,885 INFO : Inserting SPRC

11 May 2020 16:05:05,088 INFO : 73% Done

11 May 2020 16:05:05,286 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:05,286 INFO : Inserting TGFB1

11 May 2020 16:05:05,291 INFO : 74% Done

11 May 2020 16:05:05,690 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:05,690 INFO : Inserting TMPS2

11 May 2020 16:05:05,694 INFO : 75% Done

11 May 2020 16:05:05,893 INFO : 76% Done

11 May 2020 16:05:06,156 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:06,156 INFO : Inserting TPM2

11 May 2020 16:05:06,161 INFO : 77% Done

11 May 2020 16:05:06,387 INFO : 78% Done

11 May 2020 16:05:06,603 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:06,603 INFO : Inserting TWST1

11 May 2020 16:05:06,607 INFO : 79% Done

11 May 2020 16:05:06,810 INFO : 80% Done

11 May 2020 16:05:07,008 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:07,009 INFO : Inserting VEGFA

11 May 2020 16:05:07,013 INFO : 81% Done

11 May 2020 16:05:07,216 INFO : 82% Done

11 May 2020 16:05:07,415 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:07,416 INFO : Inserting PSA

11 May 2020 16:05:07,420 INFO : 83% Done

11 May 2020 16:05:07,819 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:07,819 INFO : Inserting ERG_pan

11 May 2020 16:05:07,823 INFO : 84% Done

11 May 2020 16:05:08,029 INFO : 85% Done

11 May 2020 16:05:08,231 INFO : 86% Done

11 May 2020 16:05:08,470 INFO : 87% Done

11 May 2020 16:05:08,673 INFO : 88% Done

11 May 2020 16:05:08,876 INFO : 89% Done

11 May 2020 16:05:09,100 INFO : 90% Done

11 May 2020 16:05:09,335 DEBUG: Total peptides inserted: 7

11 May 2020 16:05:09,336 INFO : Inserting ETV1

11 May 2020 16:05:09,340 INFO : 91% Done

11 May 2020 16:05:09,566 INFO : 92% Done

11 May 2020 16:05:09,792 INFO : 93% Done

11 May 2020 16:05:09,999 DEBUG: Total peptides inserted: 3

11 May 2020 16:05:09,999 INFO : Inserting ERG8

11 May 2020 16:05:10,003 INFO : 94% Done

11 May 2020 16:05:10,218 INFO : 95% Done

11 May 2020 16:05:10,426 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:10,426 INFO : Inserting SMAD4

11 May 2020 16:05:10,643 INFO : 96% Done

11 May 2020 16:05:10,806 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:10,806 INFO : Inserting STAT3

11 May 2020 16:05:10,811 INFO : 97% Done

11 May 2020 16:05:11,032 INFO : 98% Done

11 May 2020 16:05:11,235 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:11,235 INFO : Done parsing Skyline document.

11 May 2020 16:05:11,238 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:05:11,385 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:05:12,346 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:05:12,713 INFO : Cleaning up temp tables

11 May 2020 16:05:13,183 INFO : Completed import of Skyline document from CPDR-FFPE-ID-338_2020-01-28_10-39-03.sky.zip

11 May 2020 16:05:13,185 INFO : 100% Done

11 May 2020 16:05:13,199 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80146/CPDR-FFPE-ID-338_2020-01-28_10-39-03.sky.zip into the system

11 May 2020 16:05:13,199 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80138/CPDR-FFPE-ID-225_2020-01-28_10-33-37/CPDR-FFPE-ID-225.skyd into the system

11 May 2020 16:05:13,201 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80138/CPDR-FFPE-ID-225_2020-01-28_10-33-37/CPDR-FFPE-ID-225.skyd into the system

11 May 2020 16:05:13,201 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80138/CPDR-FFPE-ID-225_2020-01-28_10-33-37.sky.zip into the system

11 May 2020 16:05:13,205 INFO : Starting import from CPDR-FFPE-ID-225_2020-01-28_10-33-37.sky.zip

11 May 2020 16:05:13,212 INFO : Starting to import Skyline document from CPDR-FFPE-ID-225_2020-01-28_10-33-37.sky.zip

11 May 2020 16:05:13,230 INFO : Expanding CPDR-FFPE-ID-225.skyd

11 May 2020 16:05:13,672 INFO : Expanding CPDR-FFPE-ID-225.sky.view

11 May 2020 16:05:13,673 INFO : Expanding CPDR-FFPE-ID-225.sky

11 May 2020 16:05:14,293 INFO : Inserting TFF3

11 May 2020 16:05:14,300 INFO : 1% Done

11 May 2020 16:05:14,467 INFO : 2% Done

11 May 2020 16:05:14,610 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:14,610 INFO : Inserting AKT1

11 May 2020 16:05:14,613 INFO : 3% Done

11 May 2020 16:05:14,722 INFO : 4% Done

11 May 2020 16:05:14,852 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:14,852 INFO : Inserting AMACR

11 May 2020 16:05:14,855 INFO : 5% Done

11 May 2020 16:05:14,994 INFO : 6% Done

11 May 2020 16:05:15,170 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:15,170 INFO : Inserting ANDR

11 May 2020 16:05:15,218 INFO : 7% Done

11 May 2020 16:05:15,371 INFO : 8% Done

11 May 2020 16:05:15,520 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:15,520 INFO : Inserting ANXA2

11 May 2020 16:05:15,745 INFO : 9% Done

11 May 2020 16:05:15,975 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:15,975 INFO : Inserting AURKA

11 May 2020 16:05:15,980 INFO : 10% Done

11 May 2020 16:05:16,170 INFO : 11% Done

11 May 2020 16:05:16,350 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:16,350 INFO : Inserting BRAF

11 May 2020 16:05:16,353 INFO : 12% Done

11 May 2020 16:05:16,534 INFO : 13% Done

11 May 2020 16:05:16,700 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:16,700 INFO : Inserting CAMKK2

11 May 2020 16:05:16,703 INFO : 14% Done

11 May 2020 16:05:16,857 INFO : 15% Done

11 May 2020 16:05:17,008 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:17,008 INFO : Inserting CCND1

11 May 2020 16:05:17,011 INFO : 16% Done

11 May 2020 16:05:17,393 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:17,394 INFO : 17% Done

11 May 2020 16:05:17,394 INFO : Inserting CDN1A

11 May 2020 16:05:17,651 INFO : 18% Done

11 May 2020 16:05:17,874 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:17,874 INFO : Inserting CRISP3

11 May 2020 16:05:17,882 INFO : 19% Done

11 May 2020 16:05:18,127 INFO : 20% Done

11 May 2020 16:05:18,354 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:18,354 INFO : Inserting DCOR

11 May 2020 16:05:18,358 INFO : 21% Done

11 May 2020 16:05:18,601 INFO : 22% Done

11 May 2020 16:05:18,832 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:18,832 INFO : Inserting EGFR

11 May 2020 16:05:18,837 INFO : 23% Done

11 May 2020 16:05:19,068 INFO : 24% Done

11 May 2020 16:05:19,249 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:19,249 INFO : Inserting EZH2

11 May 2020 16:05:19,253 INFO : 25% Done

11 May 2020 16:05:19,776 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:19,776 INFO : Inserting FGFR1

11 May 2020 16:05:20,012 INFO : 26% Done

11 May 2020 16:05:20,241 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:20,241 INFO : Inserting FOLH1

11 May 2020 16:05:20,246 INFO : 27% Done

11 May 2020 16:05:20,476 INFO : 28% Done

11 May 2020 16:05:20,696 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:20,696 INFO : Inserting HIF1A

11 May 2020 16:05:20,700 INFO : 29% Done

11 May 2020 16:05:20,914 INFO : 30% Done

11 May 2020 16:05:21,105 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:21,106 INFO : Inserting HPN

11 May 2020 16:05:21,108 INFO : 31% Done

11 May 2020 16:05:21,290 INFO : 32% Done

11 May 2020 16:05:21,476 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:21,476 INFO : Inserting HSPB1

11 May 2020 16:05:21,478 INFO : 33% Done

11 May 2020 16:05:21,740 INFO : 34% Done

11 May 2020 16:05:21,933 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:21,934 INFO : Inserting HXC6

11 May 2020 16:05:21,938 INFO : 35% Done

11 May 2020 16:05:22,163 INFO : 36% Done

11 May 2020 16:05:22,378 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:22,379 INFO : Inserting KLK11

11 May 2020 16:05:22,590 INFO : 37% Done

11 May 2020 16:05:22,810 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:22,810 INFO : Inserting KLK2

11 May 2020 16:05:22,814 INFO : 38% Done

11 May 2020 16:05:23,023 INFO : 39% Done

11 May 2020 16:05:23,233 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:23,233 INFO : Inserting MMP2

11 May 2020 16:05:23,237 INFO : 40% Done

11 May 2020 16:05:23,440 INFO : 41% Done

11 May 2020 16:05:23,602 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:23,602 INFO : Inserting MMP9

11 May 2020 16:05:23,606 INFO : 42% Done

11 May 2020 16:05:23,811 INFO : 43% Done

11 May 2020 16:05:24,016 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:24,016 INFO : Inserting MUC1

11 May 2020 16:05:24,020 INFO : 44% Done

11 May 2020 16:05:24,241 INFO : 45% Done

11 May 2020 16:05:24,448 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:24,448 INFO : Inserting MUC6

11 May 2020 16:05:24,452 INFO : 46% Done

11 May 2020 16:05:24,888 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:24,888 INFO : Inserting MYC

11 May 2020 16:05:24,892 INFO : 47% Done

11 May 2020 16:05:25,097 INFO : 48% Done

11 May 2020 16:05:25,301 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:25,301 INFO : Inserting MYCN

11 May 2020 16:05:25,305 INFO : 49% Done

11 May 2020 16:05:25,510 INFO : 50% Done

11 May 2020 16:05:25,711 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:25,711 INFO : Inserting MYO6

11 May 2020 16:05:25,716 INFO : 51% Done

11 May 2020 16:05:25,920 INFO : 52% Done

11 May 2020 16:05:26,121 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:26,121 INFO : Inserting NCOA2

11 May 2020 16:05:26,125 INFO : 53% Done

11 May 2020 16:05:26,330 INFO : 54% Done

11 May 2020 16:05:26,532 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:26,532 INFO : Inserting NPY

11 May 2020 16:05:26,536 INFO : 55% Done

11 May 2020 16:05:26,748 INFO : 56% Done

11 May 2020 16:05:26,953 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:26,953 INFO : Inserting O51E2

11 May 2020 16:05:27,122 INFO : 57% Done

11 May 2020 16:05:27,325 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:27,325 INFO : Inserting OSTP

11 May 2020 16:05:27,330 INFO : 58% Done

11 May 2020 16:05:27,537 INFO : 59% Done

11 May 2020 16:05:27,740 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:27,740 INFO : Inserting P53

11 May 2020 16:05:27,744 INFO : 60% Done

11 May 2020 16:05:27,953 INFO : 61% Done

11 May 2020 16:05:28,154 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:28,154 INFO : Inserting PAFA

11 May 2020 16:05:28,158 INFO : 62% Done

11 May 2020 16:05:28,396 INFO : 63% Done

11 May 2020 16:05:28,608 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:28,608 INFO : Inserting PGFRB

11 May 2020 16:05:28,781 INFO : 64% Done

11 May 2020 16:05:28,985 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:28,985 INFO : Inserting PK3CA

11 May 2020 16:05:28,989 INFO : 65% Done

11 May 2020 16:05:29,195 INFO : 66% Done

11 May 2020 16:05:29,397 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:29,397 INFO : Inserting RAF1

11 May 2020 16:05:29,401 INFO : 67% Done

11 May 2020 16:05:29,606 INFO : 68% Done

11 May 2020 16:05:29,769 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:29,769 INFO : Inserting SERPINI1

11 May 2020 16:05:29,773 INFO : 69% Done

11 May 2020 16:05:29,979 INFO : 70% Done

11 May 2020 16:05:30,182 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:30,183 INFO : Inserting SPINK1

11 May 2020 16:05:30,187 INFO : 71% Done

11 May 2020 16:05:30,411 INFO : 72% Done

11 May 2020 16:05:30,614 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:30,615 INFO : Inserting SPRC

11 May 2020 16:05:30,826 INFO : 73% Done

11 May 2020 16:05:31,028 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:31,029 INFO : Inserting TGFB1

11 May 2020 16:05:31,033 INFO : 74% Done

11 May 2020 16:05:31,501 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:31,501 INFO : Inserting TMPS2

11 May 2020 16:05:31,505 INFO : 75% Done

11 May 2020 16:05:31,707 INFO : 76% Done

11 May 2020 16:05:31,907 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:31,907 INFO : Inserting TPM2

11 May 2020 16:05:31,912 INFO : 77% Done

11 May 2020 16:05:32,117 INFO : 78% Done

11 May 2020 16:05:32,319 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:32,319 INFO : Inserting TWST1

11 May 2020 16:05:32,324 INFO : 79% Done

11 May 2020 16:05:32,527 INFO : 80% Done

11 May 2020 16:05:32,726 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:32,726 INFO : Inserting VEGFA

11 May 2020 16:05:32,730 INFO : 81% Done

11 May 2020 16:05:32,933 INFO : 82% Done

11 May 2020 16:05:33,133 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:33,133 INFO : Inserting PSA

11 May 2020 16:05:33,138 INFO : 83% Done

11 May 2020 16:05:33,546 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:33,546 INFO : Inserting ERG_pan

11 May 2020 16:05:33,550 INFO : 84% Done

11 May 2020 16:05:33,753 INFO : 85% Done

11 May 2020 16:05:33,969 INFO : 86% Done

11 May 2020 16:05:34,174 INFO : 87% Done

11 May 2020 16:05:34,379 INFO : 88% Done

11 May 2020 16:05:34,574 INFO : 89% Done

11 May 2020 16:05:34,763 INFO : 90% Done

11 May 2020 16:05:34,951 DEBUG: Total peptides inserted: 7

11 May 2020 16:05:34,951 INFO : Inserting ETV1

11 May 2020 16:05:34,953 INFO : 91% Done

11 May 2020 16:05:35,150 INFO : 92% Done

11 May 2020 16:05:35,357 INFO : 93% Done

11 May 2020 16:05:35,561 DEBUG: Total peptides inserted: 3

11 May 2020 16:05:35,562 INFO : Inserting ERG8

11 May 2020 16:05:35,566 INFO : 94% Done

11 May 2020 16:05:35,776 INFO : 95% Done

11 May 2020 16:05:35,980 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:35,980 INFO : Inserting SMAD4

11 May 2020 16:05:36,197 INFO : 96% Done

11 May 2020 16:05:36,362 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:36,362 INFO : Inserting STAT3

11 May 2020 16:05:36,366 INFO : 97% Done

11 May 2020 16:05:36,574 INFO : 98% Done

11 May 2020 16:05:36,780 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:36,780 INFO : Done parsing Skyline document.

11 May 2020 16:05:36,782 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:05:36,930 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:05:37,668 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:05:37,878 INFO : Cleaning up temp tables

11 May 2020 16:05:38,329 INFO : Completed import of Skyline document from CPDR-FFPE-ID-225_2020-01-28_10-33-37.sky.zip

11 May 2020 16:05:38,331 INFO : 100% Done

11 May 2020 16:05:38,343 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80138/CPDR-FFPE-ID-225_2020-01-28_10-33-37.sky.zip into the system

11 May 2020 16:05:38,343 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80171/CPDR-FFPE-ID-374_2020-01-28_10-55-44/CPDR-FFPE-ID-374.skyd into the system

11 May 2020 16:05:38,345 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80171/CPDR-FFPE-ID-374_2020-01-28_10-55-44/CPDR-FFPE-ID-374.skyd into the system

11 May 2020 16:05:38,345 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80171/CPDR-FFPE-ID-374_2020-01-28_10-55-44.sky.zip into the system

11 May 2020 16:05:38,349 INFO : Starting import from CPDR-FFPE-ID-374_2020-01-28_10-55-44.sky.zip

11 May 2020 16:05:38,355 INFO : Starting to import Skyline document from CPDR-FFPE-ID-374_2020-01-28_10-55-44.sky.zip

11 May 2020 16:05:38,371 INFO : Expanding CPDR-FFPE-ID-374.skyd

11 May 2020 16:05:38,834 INFO : Expanding CPDR-FFPE-ID-374.sky.view

11 May 2020 16:05:38,835 INFO : Expanding CPDR-FFPE-ID-374.sky

11 May 2020 16:05:39,334 INFO : Inserting TFF3

11 May 2020 16:05:39,340 INFO : 1% Done

11 May 2020 16:05:39,527 INFO : 2% Done

11 May 2020 16:05:39,740 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:39,740 INFO : Inserting AKT1

11 May 2020 16:05:39,745 INFO : 3% Done

11 May 2020 16:05:39,914 INFO : 4% Done

11 May 2020 16:05:40,121 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:40,122 INFO : Inserting AMACR

11 May 2020 16:05:40,126 INFO : 5% Done

11 May 2020 16:05:40,334 INFO : 6% Done

11 May 2020 16:05:40,538 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:40,539 INFO : Inserting ANDR

11 May 2020 16:05:40,543 INFO : 7% Done

11 May 2020 16:05:40,751 INFO : 8% Done

11 May 2020 16:05:40,957 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:40,958 INFO : Inserting ANXA2

11 May 2020 16:05:41,164 INFO : 9% Done

11 May 2020 16:05:41,366 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:41,366 INFO : Inserting AURKA

11 May 2020 16:05:41,370 INFO : 10% Done

11 May 2020 16:05:41,601 INFO : 11% Done

11 May 2020 16:05:41,821 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:41,821 INFO : Inserting BRAF

11 May 2020 16:05:41,825 INFO : 12% Done

11 May 2020 16:05:42,030 INFO : 13% Done

11 May 2020 16:05:42,227 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:42,227 INFO : Inserting CAMKK2

11 May 2020 16:05:42,230 INFO : 14% Done

11 May 2020 16:05:42,434 INFO : 15% Done

11 May 2020 16:05:42,635 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:42,635 INFO : Inserting CCND1

11 May 2020 16:05:42,640 INFO : 16% Done

11 May 2020 16:05:42,847 INFO : 17% Done

11 May 2020 16:05:43,008 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:43,008 INFO : Inserting CDN1A

11 May 2020 16:05:43,217 INFO : 18% Done

11 May 2020 16:05:43,428 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:43,428 INFO : Inserting CRISP3

11 May 2020 16:05:43,432 INFO : 19% Done

11 May 2020 16:05:43,653 INFO : 20% Done

11 May 2020 16:05:43,865 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:43,865 INFO : Inserting DCOR

11 May 2020 16:05:43,869 INFO : 21% Done

11 May 2020 16:05:44,075 INFO : 22% Done

11 May 2020 16:05:44,274 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:44,274 INFO : Inserting EGFR

11 May 2020 16:05:44,278 INFO : 23% Done

11 May 2020 16:05:44,481 INFO : 24% Done

11 May 2020 16:05:44,643 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:44,643 INFO : Inserting EZH2

11 May 2020 16:05:44,648 INFO : 25% Done

11 May 2020 16:05:45,048 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:45,048 INFO : Inserting FGFR1

11 May 2020 16:05:45,256 INFO : 26% Done

11 May 2020 16:05:45,456 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:45,456 INFO : Inserting FOLH1

11 May 2020 16:05:45,461 INFO : 27% Done

11 May 2020 16:05:45,665 INFO : 28% Done

11 May 2020 16:05:45,878 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:45,879 INFO : Inserting HIF1A

11 May 2020 16:05:45,886 INFO : 29% Done

11 May 2020 16:05:46,133 INFO : 30% Done

11 May 2020 16:05:46,363 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:46,364 INFO : Inserting HPN

11 May 2020 16:05:46,368 INFO : 31% Done

11 May 2020 16:05:46,623 INFO : 32% Done

11 May 2020 16:05:46,830 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:46,830 INFO : Inserting HSPB1

11 May 2020 16:05:46,835 INFO : 33% Done

11 May 2020 16:05:47,043 INFO : 34% Done

11 May 2020 16:05:47,254 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:47,254 INFO : Inserting HXC6

11 May 2020 16:05:47,258 INFO : 35% Done

11 May 2020 16:05:47,860 INFO : 36% Done

11 May 2020 16:05:48,092 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:48,093 INFO : Inserting KLK11

11 May 2020 16:05:48,331 INFO : 37% Done

11 May 2020 16:05:48,564 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:48,564 INFO : Inserting KLK2

11 May 2020 16:05:48,568 INFO : 38% Done

11 May 2020 16:05:48,801 INFO : 39% Done

11 May 2020 16:05:49,035 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:49,035 INFO : Inserting MMP2

11 May 2020 16:05:49,039 INFO : 40% Done

11 May 2020 16:05:49,273 INFO : 41% Done

11 May 2020 16:05:49,461 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:49,461 INFO : Inserting MMP9

11 May 2020 16:05:49,466 INFO : 42% Done

11 May 2020 16:05:49,683 INFO : 43% Done

11 May 2020 16:05:49,899 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:49,900 INFO : Inserting MUC1

11 May 2020 16:05:49,904 INFO : 44% Done

11 May 2020 16:05:50,115 INFO : 45% Done

11 May 2020 16:05:50,320 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:50,320 INFO : Inserting MUC6

11 May 2020 16:05:50,537 INFO : 46% Done

11 May 2020 16:05:50,743 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:50,744 INFO : Inserting MYC

11 May 2020 16:05:50,748 INFO : 47% Done

11 May 2020 16:05:50,962 INFO : 48% Done

11 May 2020 16:05:51,174 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:51,174 INFO : Inserting MYCN

11 May 2020 16:05:51,178 INFO : 49% Done

11 May 2020 16:05:51,393 INFO : 50% Done

11 May 2020 16:05:51,603 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:51,603 INFO : Inserting MYO6

11 May 2020 16:05:51,608 INFO : 51% Done

11 May 2020 16:05:51,854 INFO : 52% Done

11 May 2020 16:05:52,063 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:52,063 INFO : Inserting NCOA2

11 May 2020 16:05:52,067 INFO : 53% Done

11 May 2020 16:05:52,278 INFO : 54% Done

11 May 2020 16:05:52,480 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:52,480 INFO : Inserting NPY

11 May 2020 16:05:52,484 INFO : 55% Done

11 May 2020 16:05:52,692 INFO : 56% Done

11 May 2020 16:05:52,893 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:52,893 INFO : Inserting O51E2

11 May 2020 16:05:53,070 INFO : 57% Done

11 May 2020 16:05:53,299 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:53,299 INFO : Inserting OSTP

11 May 2020 16:05:53,304 INFO : 58% Done

11 May 2020 16:05:53,539 INFO : 59% Done

11 May 2020 16:05:53,770 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:53,770 INFO : Inserting P53

11 May 2020 16:05:53,775 INFO : 60% Done

11 May 2020 16:05:54,009 INFO : 61% Done

11 May 2020 16:05:54,236 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:54,236 INFO : Inserting PAFA

11 May 2020 16:05:54,241 INFO : 62% Done

11 May 2020 16:05:54,472 INFO : 63% Done

11 May 2020 16:05:54,701 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:54,701 INFO : Inserting PGFRB

11 May 2020 16:05:54,894 INFO : 64% Done

11 May 2020 16:05:55,122 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:55,122 INFO : Inserting PK3CA

11 May 2020 16:05:55,126 INFO : 65% Done

11 May 2020 16:05:55,358 INFO : 66% Done

11 May 2020 16:05:55,589 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:55,589 INFO : Inserting RAF1

11 May 2020 16:05:55,594 INFO : 67% Done

11 May 2020 16:05:55,808 INFO : 68% Done

11 May 2020 16:05:55,973 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:55,973 INFO : Inserting SERPINI1

11 May 2020 16:05:55,977 INFO : 69% Done

11 May 2020 16:05:56,165 INFO : 70% Done

11 May 2020 16:05:56,345 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:56,345 INFO : Inserting SPINK1

11 May 2020 16:05:56,349 INFO : 71% Done

11 May 2020 16:05:56,534 INFO : 72% Done

11 May 2020 16:05:56,736 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:56,737 INFO : Inserting SPRC

11 May 2020 16:05:56,946 INFO : 73% Done

11 May 2020 16:05:57,155 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:57,155 INFO : Inserting TGFB1

11 May 2020 16:05:57,159 INFO : 74% Done

11 May 2020 16:05:57,626 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:57,627 INFO : Inserting TMPS2

11 May 2020 16:05:57,631 INFO : 75% Done

11 May 2020 16:05:57,842 INFO : 76% Done

11 May 2020 16:05:58,051 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:58,051 INFO : Inserting TPM2

11 May 2020 16:05:58,056 INFO : 77% Done

11 May 2020 16:05:58,264 INFO : 78% Done

11 May 2020 16:05:58,478 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:58,479 INFO : Inserting TWST1

11 May 2020 16:05:58,483 INFO : 79% Done

11 May 2020 16:05:58,696 INFO : 80% Done

11 May 2020 16:05:58,905 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:58,906 INFO : Inserting VEGFA

11 May 2020 16:05:58,911 INFO : 81% Done

11 May 2020 16:05:59,119 INFO : 82% Done

11 May 2020 16:05:59,321 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:59,321 INFO : Inserting PSA

11 May 2020 16:05:59,326 INFO : 83% Done

11 May 2020 16:05:59,533 INFO : 84% Done

11 May 2020 16:05:59,741 DEBUG: Total peptides inserted: 2

11 May 2020 16:05:59,741 INFO : Inserting ERG_pan

11 May 2020 16:05:59,959 INFO : 85% Done

11 May 2020 16:06:00,165 INFO : 86% Done

11 May 2020 16:06:00,378 INFO : 87% Done

11 May 2020 16:06:00,586 INFO : 88% Done

11 May 2020 16:06:00,795 INFO : 89% Done

11 May 2020 16:06:01,021 INFO : 90% Done

11 May 2020 16:06:01,235 DEBUG: Total peptides inserted: 7

11 May 2020 16:06:01,235 INFO : Inserting ETV1

11 May 2020 16:06:01,240 INFO : 91% Done

11 May 2020 16:06:01,463 INFO : 92% Done

11 May 2020 16:06:01,677 INFO : 93% Done

11 May 2020 16:06:01,883 DEBUG: Total peptides inserted: 3

11 May 2020 16:06:01,883 INFO : Inserting ERG8

11 May 2020 16:06:01,888 INFO : 94% Done

11 May 2020 16:06:02,094 INFO : 95% Done

11 May 2020 16:06:02,299 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:02,299 INFO : Inserting SMAD4

11 May 2020 16:06:02,511 INFO : 96% Done

11 May 2020 16:06:02,724 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:02,724 INFO : Inserting STAT3

11 May 2020 16:06:02,728 INFO : 97% Done

11 May 2020 16:06:02,935 INFO : 98% Done

11 May 2020 16:06:03,137 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:03,138 INFO : Done parsing Skyline document.

11 May 2020 16:06:03,140 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:06:03,288 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:06:04,093 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:06:04,269 INFO : Cleaning up temp tables

11 May 2020 16:06:04,278 INFO : Completed import of Skyline document from CPDR-FFPE-ID-374_2020-01-28_10-55-44.sky.zip

11 May 2020 16:06:04,279 INFO : 100% Done

11 May 2020 16:06:04,287 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80171/CPDR-FFPE-ID-374_2020-01-28_10-55-44.sky.zip into the system

11 May 2020 16:06:04,287 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80170/CPDR-FFPE-ID-367_2020-01-28_10-54-14/CPDR-FFPE-ID-367.skyd into the system

11 May 2020 16:06:04,289 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80170/CPDR-FFPE-ID-367_2020-01-28_10-54-14/CPDR-FFPE-ID-367.skyd into the system

11 May 2020 16:06:04,289 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80170/CPDR-FFPE-ID-367_2020-01-28_10-54-14.sky.zip into the system

11 May 2020 16:06:04,292 INFO : Starting import from CPDR-FFPE-ID-367_2020-01-28_10-54-14.sky.zip

11 May 2020 16:06:04,295 INFO : Starting to import Skyline document from CPDR-FFPE-ID-367_2020-01-28_10-54-14.sky.zip

11 May 2020 16:06:04,303 INFO : Expanding CPDR-FFPE-ID-367.skyd

11 May 2020 16:06:04,484 INFO : Expanding CPDR-FFPE-ID-367.sky.view

11 May 2020 16:06:04,485 INFO : Expanding CPDR-FFPE-ID-367.sky

11 May 2020 16:06:05,091 INFO : Inserting TFF3

11 May 2020 16:06:05,100 INFO : 1% Done

11 May 2020 16:06:05,298 INFO : 2% Done

11 May 2020 16:06:05,488 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:05,488 INFO : Inserting AKT1

11 May 2020 16:06:05,492 INFO : 3% Done

11 May 2020 16:06:05,663 INFO : 4% Done

11 May 2020 16:06:05,892 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:05,892 INFO : Inserting AMACR

11 May 2020 16:06:05,896 INFO : 5% Done

11 May 2020 16:06:06,128 INFO : 6% Done

11 May 2020 16:06:06,360 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:06,360 INFO : Inserting ANDR

11 May 2020 16:06:06,364 INFO : 7% Done

11 May 2020 16:06:06,599 INFO : 8% Done

11 May 2020 16:06:06,847 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:06,848 INFO : Inserting ANXA2

11 May 2020 16:06:07,109 INFO : 9% Done

11 May 2020 16:06:07,337 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:07,337 INFO : Inserting AURKA

11 May 2020 16:06:07,341 INFO : 10% Done

11 May 2020 16:06:07,572 INFO : 11% Done

11 May 2020 16:06:07,803 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:07,803 INFO : Inserting BRAF

11 May 2020 16:06:07,808 INFO : 12% Done

11 May 2020 16:06:08,046 INFO : 13% Done

11 May 2020 16:06:08,247 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:08,247 INFO : Inserting CAMKK2

11 May 2020 16:06:08,252 INFO : 14% Done

11 May 2020 16:06:08,456 INFO : 15% Done

11 May 2020 16:06:08,655 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:08,655 INFO : Inserting CCND1

11 May 2020 16:06:08,659 INFO : 16% Done

11 May 2020 16:06:08,859 INFO : 17% Done

11 May 2020 16:06:09,021 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:09,021 INFO : Inserting CDN1A

11 May 2020 16:06:09,260 INFO : 18% Done

11 May 2020 16:06:09,489 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:09,489 INFO : Inserting CRISP3

11 May 2020 16:06:09,493 INFO : 19% Done

11 May 2020 16:06:09,700 INFO : 20% Done

11 May 2020 16:06:09,898 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:09,898 INFO : Inserting DCOR

11 May 2020 16:06:09,903 INFO : 21% Done

11 May 2020 16:06:10,105 INFO : 22% Done

11 May 2020 16:06:10,305 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:10,305 INFO : Inserting EGFR

11 May 2020 16:06:10,309 INFO : 23% Done

11 May 2020 16:06:10,512 INFO : 24% Done

11 May 2020 16:06:10,677 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:10,677 INFO : Inserting EZH2

11 May 2020 16:06:10,681 INFO : 25% Done

11 May 2020 16:06:11,091 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:11,091 INFO : Inserting FGFR1

11 May 2020 16:06:11,303 INFO : 26% Done

11 May 2020 16:06:11,503 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:11,504 INFO : Inserting FOLH1

11 May 2020 16:06:11,508 INFO : 27% Done

11 May 2020 16:06:11,715 INFO : 28% Done

11 May 2020 16:06:11,971 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:11,971 INFO : Inserting HIF1A

11 May 2020 16:06:11,975 INFO : 29% Done

11 May 2020 16:06:12,181 INFO : 30% Done

11 May 2020 16:06:12,386 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:12,386 INFO : Inserting HPN

11 May 2020 16:06:12,390 INFO : 31% Done

11 May 2020 16:06:12,961 INFO : 32% Done

11 May 2020 16:06:13,161 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:13,161 INFO : Inserting HSPB1

11 May 2020 16:06:13,165 INFO : 33% Done

11 May 2020 16:06:13,369 INFO : 34% Done

11 May 2020 16:06:13,576 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:13,576 INFO : Inserting HXC6

11 May 2020 16:06:13,581 INFO : 35% Done

11 May 2020 16:06:13,788 INFO : 36% Done

11 May 2020 16:06:13,993 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:13,994 INFO : Inserting KLK11

11 May 2020 16:06:13,998 INFO : 37% Done

11 May 2020 16:06:14,403 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:14,403 INFO : Inserting KLK2

11 May 2020 16:06:14,407 INFO : 38% Done

11 May 2020 16:06:14,610 INFO : 39% Done

11 May 2020 16:06:14,813 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:14,813 INFO : Inserting MMP2

11 May 2020 16:06:14,818 INFO : 40% Done

11 May 2020 16:06:15,023 INFO : 41% Done

11 May 2020 16:06:15,182 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:15,182 INFO : Inserting MMP9

11 May 2020 16:06:15,186 INFO : 42% Done

11 May 2020 16:06:15,392 INFO : 43% Done

11 May 2020 16:06:15,592 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:15,593 INFO : Inserting MUC1

11 May 2020 16:06:15,597 INFO : 44% Done

11 May 2020 16:06:15,800 INFO : 45% Done

11 May 2020 16:06:16,008 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:16,008 INFO : Inserting MUC6

11 May 2020 16:06:16,219 INFO : 46% Done

11 May 2020 16:06:16,490 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:16,490 INFO : Inserting MYC

11 May 2020 16:06:16,494 INFO : 47% Done

11 May 2020 16:06:16,704 INFO : 48% Done

11 May 2020 16:06:16,907 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:16,907 INFO : Inserting MYCN

11 May 2020 16:06:16,912 INFO : 49% Done

11 May 2020 16:06:17,131 INFO : 50% Done

11 May 2020 16:06:17,359 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:17,359 INFO : Inserting MYO6

11 May 2020 16:06:17,364 INFO : 51% Done

11 May 2020 16:06:17,609 INFO : 52% Done

11 May 2020 16:06:17,838 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:17,838 INFO : Inserting NCOA2

11 May 2020 16:06:17,842 INFO : 53% Done

11 May 2020 16:06:18,774 INFO : 54% Done

11 May 2020 16:06:19,002 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:19,003 INFO : Inserting NPY

11 May 2020 16:06:19,007 INFO : 55% Done

11 May 2020 16:06:19,238 INFO : 56% Done

11 May 2020 16:06:19,467 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:19,467 INFO : Inserting O51E2

11 May 2020 16:06:19,660 INFO : 57% Done

11 May 2020 16:06:19,892 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:19,892 INFO : Inserting OSTP

11 May 2020 16:06:19,896 INFO : 58% Done

11 May 2020 16:06:20,132 INFO : 59% Done

11 May 2020 16:06:20,363 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:20,363 INFO : Inserting P53

11 May 2020 16:06:20,368 INFO : 60% Done

11 May 2020 16:06:20,600 INFO : 61% Done

11 May 2020 16:06:20,829 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:20,829 INFO : Inserting PAFA

11 May 2020 16:06:20,833 INFO : 62% Done

11 May 2020 16:06:21,065 INFO : 63% Done

11 May 2020 16:06:21,296 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:21,296 INFO : Inserting PGFRB

11 May 2020 16:06:21,486 INFO : 64% Done

11 May 2020 16:06:21,714 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:21,714 INFO : Inserting PK3CA

11 May 2020 16:06:21,718 INFO : 65% Done

11 May 2020 16:06:21,951 INFO : 66% Done

11 May 2020 16:06:22,180 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:22,180 INFO : Inserting RAF1

11 May 2020 16:06:22,184 INFO : 67% Done

11 May 2020 16:06:22,416 INFO : 68% Done

11 May 2020 16:06:22,598 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:22,598 INFO : Inserting SERPINI1

11 May 2020 16:06:22,603 INFO : 69% Done

11 May 2020 16:06:22,836 INFO : 70% Done

11 May 2020 16:06:23,087 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:23,087 INFO : Inserting SPINK1

11 May 2020 16:06:23,092 INFO : 71% Done

11 May 2020 16:06:23,365 INFO : 72% Done

11 May 2020 16:06:23,633 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:23,633 INFO : Inserting SPRC

11 May 2020 16:06:23,637 INFO : 73% Done

11 May 2020 16:06:24,108 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:24,108 INFO : Inserting TGFB1

11 May 2020 16:06:24,113 INFO : 74% Done

11 May 2020 16:06:24,599 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:24,599 INFO : Inserting TMPS2

11 May 2020 16:06:24,603 INFO : 75% Done

11 May 2020 16:06:24,808 INFO : 76% Done

11 May 2020 16:06:25,028 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:25,029 INFO : Inserting TPM2

11 May 2020 16:06:25,033 INFO : 77% Done

11 May 2020 16:06:25,271 INFO : 78% Done

11 May 2020 16:06:25,474 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:25,474 INFO : Inserting TWST1

11 May 2020 16:06:25,478 INFO : 79% Done

11 May 2020 16:06:25,684 INFO : 80% Done

11 May 2020 16:06:25,892 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:25,892 INFO : Inserting VEGFA

11 May 2020 16:06:25,896 INFO : 81% Done

11 May 2020 16:06:26,091 INFO : 82% Done

11 May 2020 16:06:26,265 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:26,265 INFO : Inserting PSA

11 May 2020 16:06:26,269 INFO : 83% Done

11 May 2020 16:06:26,635 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:26,636 INFO : Inserting ERG_pan

11 May 2020 16:06:26,640 INFO : 84% Done

11 May 2020 16:06:26,830 INFO : 85% Done

11 May 2020 16:06:27,019 INFO : 86% Done

11 May 2020 16:06:27,225 INFO : 87% Done

11 May 2020 16:06:27,428 INFO : 88% Done

11 May 2020 16:06:27,633 INFO : 89% Done

11 May 2020 16:06:27,837 INFO : 90% Done

11 May 2020 16:06:28,039 DEBUG: Total peptides inserted: 7

11 May 2020 16:06:28,039 INFO : Inserting ETV1

11 May 2020 16:06:28,043 INFO : 91% Done

11 May 2020 16:06:28,245 INFO : 92% Done

11 May 2020 16:06:28,448 INFO : 93% Done

11 May 2020 16:06:28,648 DEBUG: Total peptides inserted: 3

11 May 2020 16:06:28,648 INFO : Inserting ERG8

11 May 2020 16:06:28,652 INFO : 94% Done

11 May 2020 16:06:28,855 INFO : 95% Done

11 May 2020 16:06:29,055 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:29,055 INFO : Inserting SMAD4

11 May 2020 16:06:29,264 INFO : 96% Done

11 May 2020 16:06:29,424 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:29,424 INFO : Inserting STAT3

11 May 2020 16:06:29,428 INFO : 97% Done

11 May 2020 16:06:29,633 INFO : 98% Done

11 May 2020 16:06:29,833 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:29,833 INFO : Done parsing Skyline document.

11 May 2020 16:06:29,835 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:06:29,981 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:06:30,684 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:06:30,865 INFO : Cleaning up temp tables

11 May 2020 16:06:30,867 INFO : Completed import of Skyline document from CPDR-FFPE-ID-367_2020-01-28_10-54-14.sky.zip

11 May 2020 16:06:30,882 INFO : 100% Done

11 May 2020 16:06:30,888 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80170/CPDR-FFPE-ID-367_2020-01-28_10-54-14.sky.zip into the system

11 May 2020 16:06:30,888 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80153/CPDR-FFPE-ID-258_2020-01-28_10-43-03/CPDR-FFPE-ID-258.skyd into the system

11 May 2020 16:06:30,889 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80153/CPDR-FFPE-ID-258_2020-01-28_10-43-03/CPDR-FFPE-ID-258.skyd into the system

11 May 2020 16:06:30,889 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80153/CPDR-FFPE-ID-258_2020-01-28_10-43-03.sky.zip into the system

11 May 2020 16:06:30,891 INFO : Starting import from CPDR-FFPE-ID-258_2020-01-28_10-43-03.sky.zip

11 May 2020 16:06:30,893 INFO : Starting to import Skyline document from CPDR-FFPE-ID-258_2020-01-28_10-43-03.sky.zip

11 May 2020 16:06:30,901 INFO : Expanding CPDR-FFPE-ID-258.skyd

11 May 2020 16:06:31,094 INFO : Expanding CPDR-FFPE-ID-258.sky.view

11 May 2020 16:06:31,094 INFO : Expanding CPDR-FFPE-ID-258.sky

11 May 2020 16:06:31,466 INFO : Inserting TFF3

11 May 2020 16:06:31,470 INFO : 1% Done

11 May 2020 16:06:31,630 INFO : 2% Done

11 May 2020 16:06:31,829 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:31,830 INFO : Inserting AKT1

11 May 2020 16:06:31,834 INFO : 3% Done

11 May 2020 16:06:31,996 INFO : 4% Done

11 May 2020 16:06:32,195 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:32,195 INFO : Inserting AMACR

11 May 2020 16:06:32,199 INFO : 5% Done

11 May 2020 16:06:32,401 INFO : 6% Done

11 May 2020 16:06:32,674 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:32,675 INFO : Inserting ANDR

11 May 2020 16:06:32,679 INFO : 7% Done

11 May 2020 16:06:33,087 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:33,087 INFO : 8% Done

11 May 2020 16:06:33,088 INFO : Inserting ANXA2

11 May 2020 16:06:33,298 INFO : 9% Done

11 May 2020 16:06:33,504 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:33,505 INFO : Inserting AURKA

11 May 2020 16:06:33,509 INFO : 10% Done

11 May 2020 16:06:33,716 INFO : 11% Done

11 May 2020 16:06:33,920 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:33,920 INFO : Inserting BRAF

11 May 2020 16:06:33,924 INFO : 12% Done

11 May 2020 16:06:34,134 INFO : 13% Done

11 May 2020 16:06:34,347 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:34,347 INFO : Inserting CAMKK2

11 May 2020 16:06:34,351 INFO : 14% Done

11 May 2020 16:06:34,562 INFO : 15% Done

11 May 2020 16:06:34,763 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:34,763 INFO : Inserting CCND1

11 May 2020 16:06:34,767 INFO : 16% Done

11 May 2020 16:06:34,992 INFO : 17% Done

11 May 2020 16:06:35,155 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:35,155 INFO : Inserting CDN1A

11 May 2020 16:06:35,365 INFO : 18% Done

11 May 2020 16:06:35,582 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:35,582 INFO : Inserting CRISP3

11 May 2020 16:06:35,586 INFO : 19% Done

11 May 2020 16:06:35,796 INFO : 20% Done

11 May 2020 16:06:36,014 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:36,014 INFO : Inserting DCOR

11 May 2020 16:06:36,019 INFO : 21% Done

11 May 2020 16:06:36,223 INFO : 22% Done

11 May 2020 16:06:36,426 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:36,426 INFO : Inserting EGFR

11 May 2020 16:06:36,431 INFO : 23% Done

11 May 2020 16:06:37,360 INFO : 24% Done

11 May 2020 16:06:37,522 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:37,522 INFO : Inserting EZH2

11 May 2020 16:06:37,524 INFO : 25% Done

11 May 2020 16:06:37,907 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:37,907 INFO : Inserting FGFR1

11 May 2020 16:06:38,101 INFO : 26% Done

11 May 2020 16:06:38,301 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:38,302 INFO : Inserting FOLH1

11 May 2020 16:06:38,306 INFO : 27% Done

11 May 2020 16:06:38,512 INFO : 28% Done

11 May 2020 16:06:38,713 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:38,713 INFO : Inserting HIF1A

11 May 2020 16:06:38,717 INFO : 29% Done

11 May 2020 16:06:38,921 INFO : 30% Done

11 May 2020 16:06:39,125 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:39,125 INFO : Inserting HPN

11 May 2020 16:06:39,129 INFO : 31% Done

11 May 2020 16:06:39,343 INFO : 32% Done

11 May 2020 16:06:39,546 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:39,546 INFO : Inserting HSPB1

11 May 2020 16:06:39,550 INFO : 33% Done

11 May 2020 16:06:39,758 INFO : 34% Done

11 May 2020 16:06:39,982 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:39,983 INFO : Inserting HXC6

11 May 2020 16:06:39,987 INFO : 35% Done

11 May 2020 16:06:40,196 INFO : 36% Done

11 May 2020 16:06:40,402 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:40,402 INFO : Inserting KLK11

11 May 2020 16:06:40,406 INFO : 37% Done

11 May 2020 16:06:40,820 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:40,821 INFO : Inserting KLK2

11 May 2020 16:06:40,825 INFO : 38% Done

11 May 2020 16:06:41,082 INFO : 39% Done

11 May 2020 16:06:41,285 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:41,285 INFO : Inserting MMP2

11 May 2020 16:06:41,290 INFO : 40% Done

11 May 2020 16:06:41,491 INFO : 41% Done

11 May 2020 16:06:41,652 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:41,652 INFO : Inserting MMP9

11 May 2020 16:06:41,656 INFO : 42% Done

11 May 2020 16:06:41,861 INFO : 43% Done

11 May 2020 16:06:42,099 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:42,099 INFO : Inserting MUC1

11 May 2020 16:06:42,103 INFO : 44% Done

11 May 2020 16:06:42,308 INFO : 45% Done

11 May 2020 16:06:42,515 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:42,515 INFO : Inserting MUC6

11 May 2020 16:06:42,751 INFO : 46% Done

11 May 2020 16:06:42,975 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:42,975 INFO : Inserting MYC

11 May 2020 16:06:42,980 INFO : 47% Done

11 May 2020 16:06:43,206 INFO : 48% Done

11 May 2020 16:06:43,431 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:43,431 INFO : Inserting MYCN

11 May 2020 16:06:43,435 INFO : 49% Done

11 May 2020 16:06:43,672 INFO : 50% Done

11 May 2020 16:06:43,898 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:43,898 INFO : Inserting MYO6

11 May 2020 16:06:43,903 INFO : 51% Done

11 May 2020 16:06:44,243 INFO : 52% Done

11 May 2020 16:06:44,467 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:44,467 INFO : Inserting NCOA2

11 May 2020 16:06:44,472 INFO : 53% Done

11 May 2020 16:06:44,700 INFO : 54% Done

11 May 2020 16:06:44,926 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:44,927 INFO : Inserting NPY

11 May 2020 16:06:44,931 INFO : 55% Done

11 May 2020 16:06:45,158 INFO : 56% Done

11 May 2020 16:06:45,381 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:45,381 INFO : Inserting O51E2

11 May 2020 16:06:45,568 INFO : 57% Done

11 May 2020 16:06:45,794 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:45,794 INFO : Inserting OSTP

11 May 2020 16:06:45,799 INFO : 58% Done

11 May 2020 16:06:46,021 INFO : 59% Done

11 May 2020 16:06:46,221 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:46,221 INFO : Inserting P53

11 May 2020 16:06:46,226 INFO : 60% Done

11 May 2020 16:06:46,429 INFO : 61% Done

11 May 2020 16:06:46,630 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:46,630 INFO : Inserting PAFA

11 May 2020 16:06:46,634 INFO : 62% Done

11 May 2020 16:06:46,841 INFO : 63% Done

11 May 2020 16:06:47,045 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:47,045 INFO : Inserting PGFRB

11 May 2020 16:06:47,213 INFO : 64% Done

11 May 2020 16:06:47,419 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:47,419 INFO : Inserting PK3CA

11 May 2020 16:06:47,423 INFO : 65% Done

11 May 2020 16:06:47,628 INFO : 66% Done

11 May 2020 16:06:47,831 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:47,831 INFO : Inserting RAF1

11 May 2020 16:06:47,836 INFO : 67% Done

11 May 2020 16:06:48,088 INFO : 68% Done

11 May 2020 16:06:48,252 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:48,253 INFO : Inserting SERPINI1

11 May 2020 16:06:48,257 INFO : 69% Done

11 May 2020 16:06:48,465 INFO : 70% Done

11 May 2020 16:06:48,665 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:48,665 INFO : Inserting SPINK1

11 May 2020 16:06:48,669 INFO : 71% Done

11 May 2020 16:06:48,875 INFO : 72% Done

11 May 2020 16:06:49,076 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:49,076 INFO : Inserting SPRC

11 May 2020 16:06:49,285 INFO : 73% Done

11 May 2020 16:06:49,537 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:49,538 INFO : Inserting TGFB1

11 May 2020 16:06:49,542 INFO : 74% Done

11 May 2020 16:06:49,996 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:49,996 INFO : Inserting TMPS2

11 May 2020 16:06:50,001 INFO : 75% Done

11 May 2020 16:06:50,221 INFO : 76% Done

11 May 2020 16:06:50,436 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:50,436 INFO : Inserting TPM2

11 May 2020 16:06:50,441 INFO : 77% Done

11 May 2020 16:06:50,660 INFO : 78% Done

11 May 2020 16:06:50,870 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:50,870 INFO : Inserting TWST1

11 May 2020 16:06:50,874 INFO : 79% Done

11 May 2020 16:06:51,151 INFO : 80% Done

11 May 2020 16:06:51,361 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:51,361 INFO : Inserting VEGFA

11 May 2020 16:06:51,365 INFO : 81% Done

11 May 2020 16:06:51,569 INFO : 82% Done

11 May 2020 16:06:51,767 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:51,767 INFO : Inserting PSA

11 May 2020 16:06:51,772 INFO : 83% Done

11 May 2020 16:06:52,169 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:52,170 INFO : Inserting ERG_pan

11 May 2020 16:06:52,174 INFO : 84% Done

11 May 2020 16:06:52,386 INFO : 85% Done

11 May 2020 16:06:52,591 INFO : 86% Done

11 May 2020 16:06:52,798 INFO : 87% Done

11 May 2020 16:06:53,000 INFO : 88% Done

11 May 2020 16:06:53,257 INFO : 89% Done

11 May 2020 16:06:53,463 INFO : 90% Done

11 May 2020 16:06:53,666 DEBUG: Total peptides inserted: 7

11 May 2020 16:06:53,666 INFO : Inserting ETV1

11 May 2020 16:06:53,671 INFO : 91% Done

11 May 2020 16:06:53,877 INFO : 92% Done

11 May 2020 16:06:54,137 INFO : 93% Done

11 May 2020 16:06:54,343 DEBUG: Total peptides inserted: 3

11 May 2020 16:06:54,343 INFO : Inserting ERG8

11 May 2020 16:06:54,348 INFO : 94% Done

11 May 2020 16:06:54,553 INFO : 95% Done

11 May 2020 16:06:54,759 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:54,759 INFO : Inserting SMAD4

11 May 2020 16:06:54,974 INFO : 96% Done

11 May 2020 16:06:55,138 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:55,138 INFO : Inserting STAT3

11 May 2020 16:06:55,142 INFO : 97% Done

11 May 2020 16:06:55,348 INFO : 98% Done

11 May 2020 16:06:55,551 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:55,551 INFO : Done parsing Skyline document.

11 May 2020 16:06:55,553 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:06:55,700 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:06:56,544 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:06:56,807 INFO : Cleaning up temp tables

11 May 2020 16:06:57,231 INFO : Completed import of Skyline document from CPDR-FFPE-ID-258_2020-01-28_10-43-03.sky.zip

11 May 2020 16:06:57,233 INFO : 100% Done

11 May 2020 16:06:57,246 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80153/CPDR-FFPE-ID-258_2020-01-28_10-43-03.sky.zip into the system

11 May 2020 16:06:57,246 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80149/CPDR-FFPE-ID-247_2020-01-28_10-40-32/CPDR-FFPE-ID-247.skyd into the system

11 May 2020 16:06:57,248 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80149/CPDR-FFPE-ID-247_2020-01-28_10-40-32/CPDR-FFPE-ID-247.skyd into the system

11 May 2020 16:06:57,248 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80149/CPDR-FFPE-ID-247_2020-01-28_10-40-32.sky.zip into the system

11 May 2020 16:06:57,253 INFO : Starting import from CPDR-FFPE-ID-247_2020-01-28_10-40-32.sky.zip

11 May 2020 16:06:57,261 INFO : Starting to import Skyline document from CPDR-FFPE-ID-247_2020-01-28_10-40-32.sky.zip

11 May 2020 16:06:57,279 INFO : Expanding CPDR-FFPE-ID-247.skyd

11 May 2020 16:06:57,702 INFO : Expanding CPDR-FFPE-ID-247.sky.view

11 May 2020 16:06:57,702 INFO : Expanding CPDR-FFPE-ID-247.sky

11 May 2020 16:06:58,203 INFO : Inserting TFF3

11 May 2020 16:06:58,207 INFO : 1% Done

11 May 2020 16:06:58,303 INFO : 2% Done

11 May 2020 16:06:58,393 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:58,393 INFO : Inserting AKT1

11 May 2020 16:06:58,395 INFO : 3% Done

11 May 2020 16:06:58,470 INFO : 4% Done

11 May 2020 16:06:58,620 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:58,621 INFO : Inserting AMACR

11 May 2020 16:06:58,625 INFO : 5% Done

11 May 2020 16:06:58,856 INFO : 6% Done

11 May 2020 16:06:59,086 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:59,086 INFO : Inserting ANDR

11 May 2020 16:06:59,090 INFO : 7% Done

11 May 2020 16:06:59,549 DEBUG: Total peptides inserted: 2

11 May 2020 16:06:59,550 INFO : 8% Done

11 May 2020 16:06:59,550 INFO : Inserting ANXA2

11 May 2020 16:06:59,785 INFO : 9% Done

11 May 2020 16:07:00,014 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:00,014 INFO : Inserting AURKA

11 May 2020 16:07:00,019 INFO : 10% Done

11 May 2020 16:07:00,252 INFO : 11% Done

11 May 2020 16:07:00,481 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:00,481 INFO : Inserting BRAF

11 May 2020 16:07:00,485 INFO : 12% Done

11 May 2020 16:07:00,719 INFO : 13% Done

11 May 2020 16:07:00,947 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:00,947 INFO : Inserting CAMKK2

11 May 2020 16:07:00,952 INFO : 14% Done

11 May 2020 16:07:01,230 INFO : 15% Done

11 May 2020 16:07:01,507 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:01,507 INFO : Inserting CCND1

11 May 2020 16:07:01,511 INFO : 16% Done

11 May 2020 16:07:01,743 INFO : 17% Done

11 May 2020 16:07:01,927 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:01,927 INFO : Inserting CDN1A

11 May 2020 16:07:02,167 INFO : 18% Done

11 May 2020 16:07:02,396 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:02,396 INFO : Inserting CRISP3

11 May 2020 16:07:02,401 INFO : 19% Done

11 May 2020 16:07:02,638 INFO : 20% Done

11 May 2020 16:07:02,867 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:02,867 INFO : Inserting DCOR

11 May 2020 16:07:02,872 INFO : 21% Done

11 May 2020 16:07:03,104 INFO : 22% Done

11 May 2020 16:07:03,334 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:03,334 INFO : Inserting EGFR

11 May 2020 16:07:03,338 INFO : 23% Done

11 May 2020 16:07:03,568 INFO : 24% Done

11 May 2020 16:07:03,750 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:03,750 INFO : Inserting EZH2

11 May 2020 16:07:03,754 INFO : 25% Done

11 May 2020 16:07:04,215 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:04,215 INFO : Inserting FGFR1

11 May 2020 16:07:04,451 INFO : 26% Done

11 May 2020 16:07:04,703 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:04,704 INFO : Inserting FOLH1

11 May 2020 16:07:04,708 INFO : 27% Done

11 May 2020 16:07:04,939 INFO : 28% Done

11 May 2020 16:07:05,167 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:05,167 INFO : Inserting HIF1A

11 May 2020 16:07:05,171 INFO : 29% Done

11 May 2020 16:07:05,401 INFO : 30% Done

11 May 2020 16:07:05,629 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:05,630 INFO : Inserting HPN

11 May 2020 16:07:05,634 INFO : 31% Done

11 May 2020 16:07:05,870 INFO : 32% Done

11 May 2020 16:07:06,100 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:06,101 INFO : Inserting HSPB1

11 May 2020 16:07:06,105 INFO : 33% Done

11 May 2020 16:07:06,338 INFO : 34% Done

11 May 2020 16:07:06,576 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:06,576 INFO : Inserting HXC6

11 May 2020 16:07:06,580 INFO : 35% Done

11 May 2020 16:07:06,812 INFO : 36% Done

11 May 2020 16:07:07,041 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:07,041 INFO : Inserting KLK11

11 May 2020 16:07:07,046 INFO : 37% Done

11 May 2020 16:07:07,510 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:07,510 INFO : Inserting KLK2

11 May 2020 16:07:07,514 INFO : 38% Done

11 May 2020 16:07:07,725 INFO : 39% Done

11 May 2020 16:07:07,927 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:07,927 INFO : Inserting MMP2

11 May 2020 16:07:07,931 INFO : 40% Done

11 May 2020 16:07:08,142 INFO : 41% Done

11 May 2020 16:07:08,303 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:08,303 INFO : Inserting MMP9

11 May 2020 16:07:08,308 INFO : 42% Done

11 May 2020 16:07:08,518 INFO : 43% Done

11 May 2020 16:07:08,716 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:08,717 INFO : Inserting MUC1

11 May 2020 16:07:08,721 INFO : 44% Done

11 May 2020 16:07:08,924 INFO : 45% Done

11 May 2020 16:07:09,122 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:09,122 INFO : Inserting MUC6

11 May 2020 16:07:09,347 INFO : 46% Done

11 May 2020 16:07:09,575 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:09,575 INFO : Inserting MYC

11 May 2020 16:07:09,580 INFO : 47% Done

11 May 2020 16:07:09,812 INFO : 48% Done

11 May 2020 16:07:10,100 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:10,100 INFO : Inserting MYCN

11 May 2020 16:07:10,105 INFO : 49% Done

11 May 2020 16:07:10,339 INFO : 50% Done

11 May 2020 16:07:10,569 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:10,569 INFO : Inserting MYO6

11 May 2020 16:07:10,574 INFO : 51% Done

11 May 2020 16:07:10,809 INFO : 52% Done

11 May 2020 16:07:11,039 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:11,039 INFO : Inserting NCOA2

11 May 2020 16:07:11,043 INFO : 53% Done

11 May 2020 16:07:11,277 INFO : 54% Done

11 May 2020 16:07:11,508 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:11,508 INFO : Inserting NPY

11 May 2020 16:07:11,513 INFO : 55% Done

11 May 2020 16:07:11,741 INFO : 56% Done

11 May 2020 16:07:11,941 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:11,941 INFO : Inserting O51E2

11 May 2020 16:07:12,107 INFO : 57% Done

11 May 2020 16:07:12,306 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:12,306 INFO : Inserting OSTP

11 May 2020 16:07:12,311 INFO : 58% Done

11 May 2020 16:07:12,512 INFO : 59% Done

11 May 2020 16:07:12,713 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:12,713 INFO : Inserting P53

11 May 2020 16:07:12,741 INFO : 60% Done

11 May 2020 16:07:12,950 INFO : 61% Done

11 May 2020 16:07:13,149 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:13,150 INFO : Inserting PAFA

11 May 2020 16:07:13,154 INFO : 62% Done

11 May 2020 16:07:13,358 INFO : 63% Done

11 May 2020 16:07:13,558 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:13,558 INFO : Inserting PGFRB

11 May 2020 16:07:13,724 INFO : 64% Done

11 May 2020 16:07:13,925 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:13,925 INFO : Inserting PK3CA

11 May 2020 16:07:13,929 INFO : 65% Done

11 May 2020 16:07:14,131 INFO : 66% Done

11 May 2020 16:07:14,352 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:14,352 INFO : Inserting RAF1

11 May 2020 16:07:14,356 INFO : 67% Done

11 May 2020 16:07:14,558 INFO : 68% Done

11 May 2020 16:07:14,714 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:14,714 INFO : Inserting SERPINI1

11 May 2020 16:07:14,718 INFO : 69% Done

11 May 2020 16:07:14,917 INFO : 70% Done

11 May 2020 16:07:15,113 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:15,113 INFO : Inserting SPINK1

11 May 2020 16:07:15,117 INFO : 71% Done

11 May 2020 16:07:15,318 INFO : 72% Done

11 May 2020 16:07:15,534 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:15,535 INFO : Inserting SPRC

11 May 2020 16:07:15,539 INFO : 73% Done

11 May 2020 16:07:15,952 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:15,952 INFO : Inserting TGFB1

11 May 2020 16:07:15,957 INFO : 74% Done

11 May 2020 16:07:16,412 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:16,412 INFO : Inserting TMPS2

11 May 2020 16:07:16,416 INFO : 75% Done

11 May 2020 16:07:16,648 INFO : 76% Done

11 May 2020 16:07:16,878 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:16,878 INFO : Inserting TPM2

11 May 2020 16:07:16,882 INFO : 77% Done

11 May 2020 16:07:17,116 INFO : 78% Done

11 May 2020 16:07:17,344 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:17,344 INFO : Inserting TWST1

11 May 2020 16:07:17,348 INFO : 79% Done

11 May 2020 16:07:17,583 INFO : 80% Done

11 May 2020 16:07:17,782 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:17,782 INFO : Inserting VEGFA

11 May 2020 16:07:17,787 INFO : 81% Done

11 May 2020 16:07:18,007 INFO : 82% Done

11 May 2020 16:07:18,235 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:18,235 INFO : Inserting PSA

11 May 2020 16:07:18,239 INFO : 83% Done

11 May 2020 16:07:18,448 INFO : 84% Done

11 May 2020 16:07:18,648 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:18,648 INFO : Inserting ERG_pan

11 May 2020 16:07:18,854 INFO : 85% Done

11 May 2020 16:07:19,055 INFO : 86% Done

11 May 2020 16:07:19,259 INFO : 87% Done

11 May 2020 16:07:19,459 INFO : 88% Done

11 May 2020 16:07:19,660 INFO : 89% Done

11 May 2020 16:07:19,874 INFO : 90% Done

11 May 2020 16:07:20,100 DEBUG: Total peptides inserted: 7

11 May 2020 16:07:20,100 INFO : Inserting ETV1

11 May 2020 16:07:20,105 INFO : 91% Done

11 May 2020 16:07:20,323 INFO : 92% Done

11 May 2020 16:07:20,535 INFO : 93% Done

11 May 2020 16:07:20,738 DEBUG: Total peptides inserted: 3

11 May 2020 16:07:20,739 INFO : Inserting ERG8

11 May 2020 16:07:20,743 INFO : 94% Done

11 May 2020 16:07:20,948 INFO : 95% Done

11 May 2020 16:07:21,149 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:21,149 INFO : Inserting SMAD4

11 May 2020 16:07:21,376 INFO : 96% Done

11 May 2020 16:07:21,538 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:21,538 INFO : Inserting STAT3

11 May 2020 16:07:21,542 INFO : 97% Done

11 May 2020 16:07:21,748 INFO : 98% Done

11 May 2020 16:07:21,947 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:21,947 INFO : Done parsing Skyline document.

11 May 2020 16:07:21,949 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:07:22,097 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:07:22,760 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:07:22,952 INFO : Cleaning up temp tables

11 May 2020 16:07:22,954 INFO : Completed import of Skyline document from CPDR-FFPE-ID-247_2020-01-28_10-40-32.sky.zip

11 May 2020 16:07:22,967 INFO : 100% Done

11 May 2020 16:07:22,974 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80149/CPDR-FFPE-ID-247_2020-01-28_10-40-32.sky.zip into the system

11 May 2020 16:07:22,974 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80148/CPDR-FFPE-ID-246_2020-01-28_10-39-53/CPDR-FFPE-ID-246.skyd into the system

11 May 2020 16:07:22,975 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80148/CPDR-FFPE-ID-246_2020-01-28_10-39-53/CPDR-FFPE-ID-246.skyd into the system

11 May 2020 16:07:22,975 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80148/CPDR-FFPE-ID-246_2020-01-28_10-39-53.sky.zip into the system

11 May 2020 16:07:22,977 INFO : Starting import from CPDR-FFPE-ID-246_2020-01-28_10-39-53.sky.zip

11 May 2020 16:07:22,980 INFO : Starting to import Skyline document from CPDR-FFPE-ID-246_2020-01-28_10-39-53.sky.zip

11 May 2020 16:07:22,989 INFO : Expanding CPDR-FFPE-ID-246.skyd

11 May 2020 16:07:23,190 INFO : Expanding CPDR-FFPE-ID-246.sky.view

11 May 2020 16:07:23,190 INFO : Expanding CPDR-FFPE-ID-246.sky

11 May 2020 16:07:23,496 INFO : Inserting TFF3

11 May 2020 16:07:23,500 INFO : 1% Done

11 May 2020 16:07:23,591 INFO : 2% Done

11 May 2020 16:07:23,674 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:23,674 INFO : Inserting AKT1

11 May 2020 16:07:23,676 INFO : 3% Done

11 May 2020 16:07:23,754 INFO : 4% Done

11 May 2020 16:07:23,852 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:23,852 INFO : Inserting AMACR

11 May 2020 16:07:23,854 INFO : 5% Done

11 May 2020 16:07:23,953 INFO : 6% Done

11 May 2020 16:07:24,064 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:24,064 INFO : Inserting ANDR

11 May 2020 16:07:24,068 INFO : 7% Done

11 May 2020 16:07:24,274 INFO : 8% Done

11 May 2020 16:07:24,478 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:24,478 INFO : Inserting ANXA2

11 May 2020 16:07:24,686 INFO : 9% Done

11 May 2020 16:07:24,886 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:24,887 INFO : Inserting AURKA

11 May 2020 16:07:24,891 INFO : 10% Done

11 May 2020 16:07:25,093 INFO : 11% Done

11 May 2020 16:07:25,294 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:25,294 INFO : Inserting BRAF

11 May 2020 16:07:25,298 INFO : 12% Done

11 May 2020 16:07:25,502 INFO : 13% Done

11 May 2020 16:07:25,703 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:25,703 INFO : Inserting CAMKK2

11 May 2020 16:07:25,707 INFO : 14% Done

11 May 2020 16:07:25,915 INFO : 15% Done

11 May 2020 16:07:26,116 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:26,117 INFO : Inserting CCND1

11 May 2020 16:07:26,121 INFO : 16% Done

11 May 2020 16:07:26,488 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:26,488 INFO : Inserting CDN1A

11 May 2020 16:07:26,492 INFO : 17% Done

11 May 2020 16:07:26,705 INFO : 18% Done

11 May 2020 16:07:26,990 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:26,990 INFO : Inserting CRISP3

11 May 2020 16:07:26,994 INFO : 19% Done

11 May 2020 16:07:27,199 INFO : 20% Done

11 May 2020 16:07:27,418 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:27,418 INFO : Inserting DCOR

11 May 2020 16:07:27,423 INFO : 21% Done

11 May 2020 16:07:27,647 INFO : 22% Done

11 May 2020 16:07:27,853 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:27,853 INFO : Inserting EGFR

11 May 2020 16:07:27,857 INFO : 23% Done

11 May 2020 16:07:28,061 INFO : 24% Done

11 May 2020 16:07:28,226 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:28,226 INFO : Inserting EZH2

11 May 2020 16:07:28,231 INFO : 25% Done

11 May 2020 16:07:28,644 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:28,645 INFO : Inserting FGFR1

11 May 2020 16:07:28,854 INFO : 26% Done

11 May 2020 16:07:29,056 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:29,056 INFO : Inserting FOLH1

11 May 2020 16:07:29,060 INFO : 27% Done

11 May 2020 16:07:29,266 INFO : 28% Done

11 May 2020 16:07:29,469 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:29,469 INFO : Inserting HIF1A

11 May 2020 16:07:29,473 INFO : 29% Done

11 May 2020 16:07:29,681 INFO : 30% Done

11 May 2020 16:07:29,883 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:29,883 INFO : Inserting HPN

11 May 2020 16:07:29,888 INFO : 31% Done

11 May 2020 16:07:30,099 INFO : 32% Done

11 May 2020 16:07:30,305 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:30,305 INFO : Inserting HSPB1

11 May 2020 16:07:30,309 INFO : 33% Done

11 May 2020 16:07:30,517 INFO : 34% Done

11 May 2020 16:07:30,729 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:30,729 INFO : Inserting HXC6

11 May 2020 16:07:30,734 INFO : 35% Done

11 May 2020 16:07:30,945 INFO : 36% Done

11 May 2020 16:07:31,148 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:31,148 INFO : Inserting KLK11

11 May 2020 16:07:31,378 INFO : 37% Done

11 May 2020 16:07:31,588 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:31,588 INFO : Inserting KLK2

11 May 2020 16:07:31,592 INFO : 38% Done

11 May 2020 16:07:31,798 INFO : 39% Done

11 May 2020 16:07:32,002 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:32,002 INFO : Inserting MMP2

11 May 2020 16:07:32,006 INFO : 40% Done

11 May 2020 16:07:32,202 INFO : 41% Done

11 May 2020 16:07:32,359 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:32,360 INFO : Inserting MMP9

11 May 2020 16:07:32,364 INFO : 42% Done

11 May 2020 16:07:32,587 INFO : 43% Done

11 May 2020 16:07:32,789 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:32,790 INFO : Inserting MUC1

11 May 2020 16:07:32,794 INFO : 44% Done

11 May 2020 16:07:33,218 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:33,218 INFO : Inserting MUC6

11 May 2020 16:07:33,222 INFO : 45% Done

11 May 2020 16:07:33,435 INFO : 46% Done

11 May 2020 16:07:33,646 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:33,646 INFO : Inserting MYC

11 May 2020 16:07:33,651 INFO : 47% Done

11 May 2020 16:07:33,857 INFO : 48% Done

11 May 2020 16:07:34,061 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:34,061 INFO : Inserting MYCN

11 May 2020 16:07:34,065 INFO : 49% Done

11 May 2020 16:07:34,297 INFO : 50% Done

11 May 2020 16:07:34,503 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:34,503 INFO : Inserting MYO6

11 May 2020 16:07:34,507 INFO : 51% Done

11 May 2020 16:07:34,713 INFO : 52% Done

11 May 2020 16:07:34,915 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:34,916 INFO : Inserting NCOA2

11 May 2020 16:07:34,920 INFO : 53% Done

11 May 2020 16:07:35,135 INFO : 54% Done

11 May 2020 16:07:35,372 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:35,372 INFO : Inserting NPY

11 May 2020 16:07:35,377 INFO : 55% Done

11 May 2020 16:07:35,604 INFO : 56% Done

11 May 2020 16:07:35,803 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:35,804 INFO : Inserting O51E2

11 May 2020 16:07:35,979 INFO : 57% Done

11 May 2020 16:07:36,242 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:36,243 INFO : Inserting OSTP

11 May 2020 16:07:36,247 INFO : 58% Done

11 May 2020 16:07:36,468 INFO : 59% Done

11 May 2020 16:07:36,686 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:36,686 INFO : Inserting P53

11 May 2020 16:07:36,690 INFO : 60% Done

11 May 2020 16:07:36,935 INFO : 61% Done

11 May 2020 16:07:37,139 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:37,140 INFO : Inserting PAFA

11 May 2020 16:07:37,144 INFO : 62% Done

11 May 2020 16:07:37,354 INFO : 63% Done

11 May 2020 16:07:37,558 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:37,558 INFO : Inserting PGFRB

11 May 2020 16:07:37,729 INFO : 64% Done

11 May 2020 16:07:37,929 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:37,929 INFO : Inserting PK3CA

11 May 2020 16:07:37,933 INFO : 65% Done

11 May 2020 16:07:38,140 INFO : 66% Done

11 May 2020 16:07:38,342 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:38,342 INFO : Inserting RAF1

11 May 2020 16:07:38,346 INFO : 67% Done

11 May 2020 16:07:38,550 INFO : 68% Done

11 May 2020 16:07:38,713 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:38,713 INFO : Inserting SERPINI1

11 May 2020 16:07:38,717 INFO : 69% Done

11 May 2020 16:07:38,921 INFO : 70% Done

11 May 2020 16:07:39,124 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:39,124 INFO : Inserting SPINK1

11 May 2020 16:07:39,128 INFO : 71% Done

11 May 2020 16:07:39,542 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:39,542 INFO : Inserting SPRC

11 May 2020 16:07:39,546 INFO : 72% Done

11 May 2020 16:07:39,750 INFO : 73% Done

11 May 2020 16:07:40,008 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:40,008 INFO : Inserting TGFB1

11 May 2020 16:07:40,012 INFO : 74% Done

11 May 2020 16:07:40,459 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:40,459 INFO : Inserting TMPS2

11 May 2020 16:07:40,463 INFO : 75% Done

11 May 2020 16:07:40,675 INFO : 76% Done

11 May 2020 16:07:40,879 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:40,879 INFO : Inserting TPM2

11 May 2020 16:07:40,883 INFO : 77% Done

11 May 2020 16:07:41,104 INFO : 78% Done

11 May 2020 16:07:41,308 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:41,309 INFO : Inserting TWST1

11 May 2020 16:07:41,313 INFO : 79% Done

11 May 2020 16:07:41,523 INFO : 80% Done

11 May 2020 16:07:41,727 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:41,727 INFO : Inserting VEGFA

11 May 2020 16:07:41,732 INFO : 81% Done

11 May 2020 16:07:41,944 INFO : 82% Done

11 May 2020 16:07:42,154 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:42,154 INFO : Inserting PSA

11 May 2020 16:07:42,159 INFO : 83% Done

11 May 2020 16:07:42,374 INFO : 84% Done

11 May 2020 16:07:42,584 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:42,585 INFO : Inserting ERG_pan

11 May 2020 16:07:42,799 INFO : 85% Done

11 May 2020 16:07:43,054 INFO : 86% Done

11 May 2020 16:07:43,291 INFO : 87% Done

11 May 2020 16:07:43,502 INFO : 88% Done

11 May 2020 16:07:43,709 INFO : 89% Done

11 May 2020 16:07:43,914 INFO : 90% Done

11 May 2020 16:07:44,117 DEBUG: Total peptides inserted: 7

11 May 2020 16:07:44,118 INFO : Inserting ETV1

11 May 2020 16:07:44,122 INFO : 91% Done

11 May 2020 16:07:44,330 INFO : 92% Done

11 May 2020 16:07:44,546 INFO : 93% Done

11 May 2020 16:07:44,757 DEBUG: Total peptides inserted: 3

11 May 2020 16:07:44,757 INFO : Inserting ERG8

11 May 2020 16:07:44,761 INFO : 94% Done

11 May 2020 16:07:44,967 INFO : 95% Done

11 May 2020 16:07:45,174 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:45,174 INFO : Inserting SMAD4

11 May 2020 16:07:45,501 INFO : 96% Done

11 May 2020 16:07:45,694 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:45,695 INFO : Inserting STAT3

11 May 2020 16:07:45,699 INFO : 97% Done

11 May 2020 16:07:45,908 INFO : 98% Done

11 May 2020 16:07:46,129 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:46,129 INFO : Done parsing Skyline document.

11 May 2020 16:07:46,131 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:07:46,278 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:07:47,294 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:07:47,670 INFO : Cleaning up temp tables

11 May 2020 16:07:48,112 INFO : Completed import of Skyline document from CPDR-FFPE-ID-246_2020-01-28_10-39-53.sky.zip

11 May 2020 16:07:48,114 INFO : 100% Done

11 May 2020 16:07:48,126 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80148/CPDR-FFPE-ID-246_2020-01-28_10-39-53.sky.zip into the system

11 May 2020 16:07:48,127 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80147/CPDR-FFPE-ID-237_2020-01-28_10-39-35/CPDR-FFPE-ID-237.skyd into the system

11 May 2020 16:07:48,128 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80147/CPDR-FFPE-ID-237_2020-01-28_10-39-35/CPDR-FFPE-ID-237.skyd into the system

11 May 2020 16:07:48,128 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80147/CPDR-FFPE-ID-237_2020-01-28_10-39-35.sky.zip into the system

11 May 2020 16:07:48,132 INFO : Starting import from CPDR-FFPE-ID-237_2020-01-28_10-39-35.sky.zip

11 May 2020 16:07:48,139 INFO : Starting to import Skyline document from CPDR-FFPE-ID-237_2020-01-28_10-39-35.sky.zip

11 May 2020 16:07:48,156 INFO : Expanding CPDR-FFPE-ID-237.skyd

11 May 2020 16:07:48,587 INFO : Expanding CPDR-FFPE-ID-237.sky.view

11 May 2020 16:07:48,588 INFO : Expanding CPDR-FFPE-ID-237.sky

11 May 2020 16:07:49,242 INFO : Inserting TFF3

11 May 2020 16:07:49,247 INFO : 1% Done

11 May 2020 16:07:49,438 INFO : 2% Done

11 May 2020 16:07:49,627 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:49,628 INFO : Inserting AKT1

11 May 2020 16:07:49,631 INFO : 3% Done

11 May 2020 16:07:49,794 INFO : 4% Done

11 May 2020 16:07:49,992 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:49,992 INFO : Inserting AMACR

11 May 2020 16:07:49,996 INFO : 5% Done

11 May 2020 16:07:50,200 INFO : 6% Done

11 May 2020 16:07:50,411 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:50,411 INFO : Inserting ANDR

11 May 2020 16:07:50,415 INFO : 7% Done

11 May 2020 16:07:50,852 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:50,852 INFO : 8% Done

11 May 2020 16:07:50,852 INFO : Inserting ANXA2

11 May 2020 16:07:51,072 INFO : 9% Done

11 May 2020 16:07:51,279 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:51,279 INFO : Inserting AURKA

11 May 2020 16:07:51,283 INFO : 10% Done

11 May 2020 16:07:51,493 INFO : 11% Done

11 May 2020 16:07:51,699 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:51,699 INFO : Inserting BRAF

11 May 2020 16:07:51,703 INFO : 12% Done

11 May 2020 16:07:51,914 INFO : 13% Done

11 May 2020 16:07:52,118 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:52,118 INFO : Inserting CAMKK2

11 May 2020 16:07:52,122 INFO : 14% Done

11 May 2020 16:07:52,333 INFO : 15% Done

11 May 2020 16:07:52,551 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:52,551 INFO : Inserting CCND1

11 May 2020 16:07:52,555 INFO : 16% Done

11 May 2020 16:07:52,762 INFO : 17% Done

11 May 2020 16:07:52,956 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:52,956 INFO : Inserting CDN1A

11 May 2020 16:07:53,168 INFO : 18% Done

11 May 2020 16:07:53,368 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:53,368 INFO : Inserting CRISP3

11 May 2020 16:07:53,372 INFO : 19% Done

11 May 2020 16:07:53,576 INFO : 20% Done

11 May 2020 16:07:53,778 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:53,778 INFO : Inserting DCOR

11 May 2020 16:07:53,782 INFO : 21% Done

11 May 2020 16:07:53,989 INFO : 22% Done

11 May 2020 16:07:54,187 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:54,187 INFO : Inserting EGFR

11 May 2020 16:07:54,191 INFO : 23% Done

11 May 2020 16:07:54,393 INFO : 24% Done

11 May 2020 16:07:54,552 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:54,553 INFO : Inserting EZH2

11 May 2020 16:07:54,557 INFO : 25% Done

11 May 2020 16:07:54,960 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:54,960 INFO : Inserting FGFR1

11 May 2020 16:07:55,166 INFO : 26% Done

11 May 2020 16:07:55,368 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:55,368 INFO : Inserting FOLH1

11 May 2020 16:07:55,372 INFO : 27% Done

11 May 2020 16:07:55,576 INFO : 28% Done

11 May 2020 16:07:55,781 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:55,782 INFO : Inserting HIF1A

11 May 2020 16:07:55,786 INFO : 29% Done

11 May 2020 16:07:55,994 INFO : 30% Done

11 May 2020 16:07:56,196 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:56,196 INFO : Inserting HPN

11 May 2020 16:07:56,200 INFO : 31% Done

11 May 2020 16:07:56,404 INFO : 32% Done

11 May 2020 16:07:56,617 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:56,617 INFO : Inserting HSPB1

11 May 2020 16:07:56,621 INFO : 33% Done

11 May 2020 16:07:56,832 INFO : 34% Done

11 May 2020 16:07:57,041 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:57,041 INFO : Inserting HXC6

11 May 2020 16:07:57,045 INFO : 35% Done

11 May 2020 16:07:57,252 INFO : 36% Done

11 May 2020 16:07:57,456 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:57,456 INFO : Inserting KLK11

11 May 2020 16:07:57,676 INFO : 37% Done

11 May 2020 16:07:57,878 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:57,878 INFO : Inserting KLK2

11 May 2020 16:07:57,882 INFO : 38% Done

11 May 2020 16:07:58,085 INFO : 39% Done

11 May 2020 16:07:58,286 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:58,286 INFO : Inserting MMP2

11 May 2020 16:07:58,290 INFO : 40% Done

11 May 2020 16:07:58,504 INFO : 41% Done

11 May 2020 16:07:58,677 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:58,677 INFO : Inserting MMP9

11 May 2020 16:07:58,682 INFO : 42% Done

11 May 2020 16:07:58,909 INFO : 43% Done

11 May 2020 16:07:59,138 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:59,138 INFO : Inserting MUC1

11 May 2020 16:07:59,142 INFO : 44% Done

11 May 2020 16:07:59,350 INFO : 45% Done

11 May 2020 16:07:59,627 DEBUG: Total peptides inserted: 2

11 May 2020 16:07:59,628 INFO : Inserting MUC6

11 May 2020 16:07:59,888 INFO : 46% Done

11 May 2020 16:08:00,092 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:00,092 INFO : Inserting MYC

11 May 2020 16:08:00,096 INFO : 47% Done

11 May 2020 16:08:00,302 INFO : 48% Done

11 May 2020 16:08:00,557 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:00,557 INFO : Inserting MYCN

11 May 2020 16:08:00,562 INFO : 49% Done

11 May 2020 16:08:00,760 INFO : 50% Done

11 May 2020 16:08:00,947 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:00,947 INFO : Inserting MYO6

11 May 2020 16:08:00,951 INFO : 51% Done

11 May 2020 16:08:01,150 INFO : 52% Done

11 May 2020 16:08:01,367 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:01,367 INFO : Inserting NCOA2

11 May 2020 16:08:01,372 INFO : 53% Done

11 May 2020 16:08:01,591 INFO : 54% Done

11 May 2020 16:08:01,793 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:01,793 INFO : Inserting NPY

11 May 2020 16:08:01,797 INFO : 55% Done

11 May 2020 16:08:02,003 INFO : 56% Done

11 May 2020 16:08:02,204 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:02,204 INFO : Inserting O51E2

11 May 2020 16:08:02,370 INFO : 57% Done

11 May 2020 16:08:02,595 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:02,595 INFO : Inserting OSTP

11 May 2020 16:08:02,600 INFO : 58% Done

11 May 2020 16:08:02,809 INFO : 59% Done

11 May 2020 16:08:03,049 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:03,049 INFO : Inserting P53

11 May 2020 16:08:03,053 INFO : 60% Done

11 May 2020 16:08:03,264 INFO : 61% Done

11 May 2020 16:08:03,528 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:03,528 INFO : Inserting PAFA

11 May 2020 16:08:03,532 INFO : 62% Done

11 May 2020 16:08:03,740 INFO : 63% Done

11 May 2020 16:08:03,943 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:03,943 INFO : Inserting PGFRB

11 May 2020 16:08:04,114 INFO : 64% Done

11 May 2020 16:08:04,356 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:04,356 INFO : Inserting PK3CA

11 May 2020 16:08:04,361 INFO : 65% Done

11 May 2020 16:08:04,576 INFO : 66% Done

11 May 2020 16:08:04,805 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:04,805 INFO : Inserting RAF1

11 May 2020 16:08:04,809 INFO : 67% Done

11 May 2020 16:08:05,026 INFO : 68% Done

11 May 2020 16:08:05,185 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:05,186 INFO : Inserting SERPINI1

11 May 2020 16:08:05,190 INFO : 69% Done

11 May 2020 16:08:05,392 INFO : 70% Done

11 May 2020 16:08:05,590 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:05,590 INFO : Inserting SPINK1

11 May 2020 16:08:05,594 INFO : 71% Done

11 May 2020 16:08:05,799 INFO : 72% Done

11 May 2020 16:08:05,997 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:05,997 INFO : Inserting SPRC

11 May 2020 16:08:06,001 INFO : 73% Done

11 May 2020 16:08:06,399 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:06,399 INFO : Inserting TGFB1

11 May 2020 16:08:06,421 INFO : 74% Done

11 May 2020 16:08:06,842 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:06,842 INFO : Inserting TMPS2

11 May 2020 16:08:06,846 INFO : 75% Done

11 May 2020 16:08:07,074 INFO : 76% Done

11 May 2020 16:08:07,298 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:07,298 INFO : Inserting TPM2

11 May 2020 16:08:07,302 INFO : 77% Done

11 May 2020 16:08:07,529 INFO : 78% Done

11 May 2020 16:08:07,801 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:07,801 INFO : Inserting TWST1

11 May 2020 16:08:07,805 INFO : 79% Done

11 May 2020 16:08:08,008 INFO : 80% Done

11 May 2020 16:08:08,255 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:08,255 INFO : Inserting VEGFA

11 May 2020 16:08:08,259 INFO : 81% Done

11 May 2020 16:08:08,478 INFO : 82% Done

11 May 2020 16:08:08,682 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:08,682 INFO : Inserting PSA

11 May 2020 16:08:08,687 INFO : 83% Done

11 May 2020 16:08:08,905 INFO : 84% Done

11 May 2020 16:08:09,143 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:09,143 INFO : Inserting ERG_pan

11 May 2020 16:08:09,362 INFO : 85% Done

11 May 2020 16:08:09,577 INFO : 86% Done

11 May 2020 16:08:09,789 INFO : 87% Done

11 May 2020 16:08:10,004 INFO : 88% Done

11 May 2020 16:08:10,211 INFO : 89% Done

11 May 2020 16:08:10,418 INFO : 90% Done

11 May 2020 16:08:10,624 DEBUG: Total peptides inserted: 7

11 May 2020 16:08:10,624 INFO : Inserting ETV1

11 May 2020 16:08:10,628 INFO : 91% Done

11 May 2020 16:08:10,848 INFO : 92% Done

11 May 2020 16:08:11,064 INFO : 93% Done

11 May 2020 16:08:11,269 DEBUG: Total peptides inserted: 3

11 May 2020 16:08:11,269 INFO : Inserting ERG8

11 May 2020 16:08:11,274 INFO : 94% Done

11 May 2020 16:08:11,483 INFO : 95% Done

11 May 2020 16:08:11,688 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:11,689 INFO : Inserting SMAD4

11 May 2020 16:08:11,909 INFO : 96% Done

11 May 2020 16:08:12,074 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:12,074 INFO : Inserting STAT3

11 May 2020 16:08:12,078 INFO : 97% Done

11 May 2020 16:08:12,288 INFO : 98% Done

11 May 2020 16:08:12,493 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:12,493 INFO : Done parsing Skyline document.

11 May 2020 16:08:12,495 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:08:12,635 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:08:13,565 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:08:13,753 INFO : Cleaning up temp tables

11 May 2020 16:08:14,198 INFO : Completed import of Skyline document from CPDR-FFPE-ID-237_2020-01-28_10-39-35.sky.zip

11 May 2020 16:08:14,199 INFO : 100% Done

11 May 2020 16:08:14,212 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80147/CPDR-FFPE-ID-237_2020-01-28_10-39-35.sky.zip into the system

11 May 2020 16:08:14,212 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80131/CPDR-FFPE-ID-259_2020-01-28_10-29-29/CPDR-FFPE-ID-259.skyd into the system

11 May 2020 16:08:14,213 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80131/CPDR-FFPE-ID-259_2020-01-28_10-29-29/CPDR-FFPE-ID-259.skyd into the system

11 May 2020 16:08:14,214 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80131/CPDR-FFPE-ID-259_2020-01-28_10-29-29.sky.zip into the system

11 May 2020 16:08:14,218 INFO : Starting import from CPDR-FFPE-ID-259_2020-01-28_10-29-29.sky.zip

11 May 2020 16:08:14,225 INFO : Starting to import Skyline document from CPDR-FFPE-ID-259_2020-01-28_10-29-29.sky.zip

11 May 2020 16:08:14,242 INFO : Expanding CPDR-FFPE-ID-259.skyd

11 May 2020 16:08:14,692 INFO : Expanding CPDR-FFPE-ID-259.sky.view

11 May 2020 16:08:14,692 INFO : Expanding CPDR-FFPE-ID-259.sky

11 May 2020 16:08:15,434 INFO : Inserting TFF3

11 May 2020 16:08:15,443 INFO : 1% Done

11 May 2020 16:08:15,666 INFO : 2% Done

11 May 2020 16:08:15,871 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:15,871 INFO : Inserting AKT1

11 May 2020 16:08:15,875 INFO : 3% Done

11 May 2020 16:08:16,045 INFO : 4% Done

11 May 2020 16:08:16,248 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:16,248 INFO : Inserting AMACR

11 May 2020 16:08:16,252 INFO : 5% Done

11 May 2020 16:08:16,459 INFO : 6% Done

11 May 2020 16:08:16,663 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:16,663 INFO : Inserting ANDR

11 May 2020 16:08:16,667 INFO : 7% Done

11 May 2020 16:08:17,102 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:17,102 INFO : Inserting ANXA2

11 May 2020 16:08:17,107 INFO : 8% Done

11 May 2020 16:08:17,324 INFO : 9% Done

11 May 2020 16:08:17,532 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:17,533 INFO : Inserting AURKA

11 May 2020 16:08:17,547 INFO : 10% Done

11 May 2020 16:08:17,759 INFO : 11% Done

11 May 2020 16:08:17,965 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:17,966 INFO : Inserting BRAF

11 May 2020 16:08:17,970 INFO : 12% Done

11 May 2020 16:08:18,205 INFO : 13% Done

11 May 2020 16:08:18,412 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:18,413 INFO : Inserting CAMKK2

11 May 2020 16:08:18,417 INFO : 14% Done

11 May 2020 16:08:18,634 INFO : 15% Done

11 May 2020 16:08:18,843 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:18,843 INFO : Inserting CCND1

11 May 2020 16:08:18,847 INFO : 16% Done

11 May 2020 16:08:19,062 INFO : 17% Done

11 May 2020 16:08:19,229 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:19,229 INFO : Inserting CDN1A

11 May 2020 16:08:19,445 INFO : 18% Done

11 May 2020 16:08:19,651 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:19,652 INFO : Inserting CRISP3

11 May 2020 16:08:19,656 INFO : 19% Done

11 May 2020 16:08:19,878 INFO : 20% Done

11 May 2020 16:08:20,087 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:20,087 INFO : Inserting DCOR

11 May 2020 16:08:20,092 INFO : 21% Done

11 May 2020 16:08:20,302 INFO : 22% Done

11 May 2020 16:08:20,509 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:20,509 INFO : Inserting EGFR

11 May 2020 16:08:20,513 INFO : 23% Done

11 May 2020 16:08:20,721 INFO : 24% Done

11 May 2020 16:08:20,888 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:20,888 INFO : Inserting EZH2

11 May 2020 16:08:20,892 INFO : 25% Done

11 May 2020 16:08:21,320 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:21,320 INFO : Inserting FGFR1

11 May 2020 16:08:21,542 INFO : 26% Done

11 May 2020 16:08:21,752 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:21,752 INFO : Inserting FOLH1

11 May 2020 16:08:21,756 INFO : 27% Done

11 May 2020 16:08:21,968 INFO : 28% Done

11 May 2020 16:08:22,177 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:22,177 INFO : Inserting HIF1A

11 May 2020 16:08:22,181 INFO : 29% Done

11 May 2020 16:08:22,395 INFO : 30% Done

11 May 2020 16:08:22,605 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:22,605 INFO : Inserting HPN

11 May 2020 16:08:22,610 INFO : 31% Done

11 May 2020 16:08:22,827 INFO : 32% Done

11 May 2020 16:08:23,053 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:23,053 INFO : Inserting HSPB1

11 May 2020 16:08:23,058 INFO : 33% Done

11 May 2020 16:08:23,271 INFO : 34% Done

11 May 2020 16:08:23,488 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:23,488 INFO : Inserting HXC6

11 May 2020 16:08:23,493 INFO : 35% Done

11 May 2020 16:08:23,706 INFO : 36% Done

11 May 2020 16:08:23,915 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:23,915 INFO : Inserting KLK11

11 May 2020 16:08:24,132 INFO : 37% Done

11 May 2020 16:08:24,365 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:24,365 INFO : Inserting KLK2

11 May 2020 16:08:24,369 INFO : 38% Done

11 May 2020 16:08:24,582 INFO : 39% Done

11 May 2020 16:08:24,795 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:24,796 INFO : Inserting MMP2

11 May 2020 16:08:24,800 INFO : 40% Done

11 May 2020 16:08:25,027 INFO : 41% Done

11 May 2020 16:08:25,212 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:25,212 INFO : Inserting MMP9

11 May 2020 16:08:25,217 INFO : 42% Done

11 May 2020 16:08:25,441 INFO : 43% Done

11 May 2020 16:08:25,652 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:25,652 INFO : Inserting MUC1

11 May 2020 16:08:25,656 INFO : 44% Done

11 May 2020 16:08:25,880 INFO : 45% Done

11 May 2020 16:08:26,086 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:26,086 INFO : Inserting MUC6

11 May 2020 16:08:26,090 INFO : 46% Done

11 May 2020 16:08:26,504 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:26,504 INFO : Inserting MYC

11 May 2020 16:08:26,508 INFO : 47% Done

11 May 2020 16:08:26,717 INFO : 48% Done

11 May 2020 16:08:26,922 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:26,922 INFO : Inserting MYCN

11 May 2020 16:08:26,927 INFO : 49% Done

11 May 2020 16:08:27,158 INFO : 50% Done

11 May 2020 16:08:27,373 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:27,373 INFO : Inserting MYO6

11 May 2020 16:08:27,378 INFO : 51% Done

11 May 2020 16:08:27,645 INFO : 52% Done

11 May 2020 16:08:27,857 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:27,858 INFO : Inserting NCOA2

11 May 2020 16:08:27,862 INFO : 53% Done

11 May 2020 16:08:28,074 INFO : 54% Done

11 May 2020 16:08:28,284 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:28,284 INFO : Inserting NPY

11 May 2020 16:08:28,288 INFO : 55% Done

11 May 2020 16:08:28,530 INFO : 56% Done

11 May 2020 16:08:28,772 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:28,772 INFO : Inserting O51E2

11 May 2020 16:08:28,946 INFO : 57% Done

11 May 2020 16:08:29,152 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:29,153 INFO : Inserting OSTP

11 May 2020 16:08:29,157 INFO : 58% Done

11 May 2020 16:08:29,372 INFO : 59% Done

11 May 2020 16:08:29,572 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:29,572 INFO : Inserting P53

11 May 2020 16:08:29,576 INFO : 60% Done

11 May 2020 16:08:29,765 INFO : 61% Done

11 May 2020 16:08:29,944 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:29,944 INFO : Inserting PAFA

11 May 2020 16:08:29,948 INFO : 62% Done

11 May 2020 16:08:30,150 INFO : 63% Done

11 May 2020 16:08:30,440 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:30,441 INFO : Inserting PGFRB

11 May 2020 16:08:30,668 INFO : 64% Done

11 May 2020 16:08:30,877 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:30,877 INFO : Inserting PK3CA

11 May 2020 16:08:30,881 INFO : 65% Done

11 May 2020 16:08:31,092 INFO : 66% Done

11 May 2020 16:08:31,299 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:31,300 INFO : Inserting RAF1

11 May 2020 16:08:31,304 INFO : 67% Done

11 May 2020 16:08:31,513 INFO : 68% Done

11 May 2020 16:08:31,679 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:31,679 INFO : Inserting SERPINI1

11 May 2020 16:08:31,684 INFO : 69% Done

11 May 2020 16:08:31,934 INFO : 70% Done

11 May 2020 16:08:32,142 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:32,142 INFO : Inserting SPINK1

11 May 2020 16:08:32,147 INFO : 71% Done

11 May 2020 16:08:32,359 INFO : 72% Done

11 May 2020 16:08:32,564 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:32,564 INFO : Inserting SPRC

11 May 2020 16:08:32,568 INFO : 73% Done

11 May 2020 16:08:32,986 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:32,987 INFO : Inserting TGFB1

11 May 2020 16:08:32,991 INFO : 74% Done

11 May 2020 16:08:33,405 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:33,405 INFO : Inserting TMPS2

11 May 2020 16:08:33,409 INFO : 75% Done

11 May 2020 16:08:33,616 INFO : 76% Done

11 May 2020 16:08:33,830 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:33,830 INFO : Inserting TPM2

11 May 2020 16:08:33,836 INFO : 77% Done

11 May 2020 16:08:34,059 INFO : 78% Done

11 May 2020 16:08:34,268 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:34,269 INFO : Inserting TWST1

11 May 2020 16:08:34,273 INFO : 79% Done

11 May 2020 16:08:34,693 INFO : 80% Done

11 May 2020 16:08:34,923 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:34,923 INFO : Inserting VEGFA

11 May 2020 16:08:34,928 INFO : 81% Done

11 May 2020 16:08:35,131 INFO : 82% Done

11 May 2020 16:08:35,320 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:35,320 INFO : Inserting PSA

11 May 2020 16:08:35,324 INFO : 83% Done

11 May 2020 16:08:35,721 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:35,721 INFO : Inserting ERG_pan

11 May 2020 16:08:35,725 INFO : 84% Done

11 May 2020 16:08:35,933 INFO : 85% Done

11 May 2020 16:08:36,161 INFO : 86% Done

11 May 2020 16:08:36,426 INFO : 87% Done

11 May 2020 16:08:36,665 INFO : 88% Done

11 May 2020 16:08:36,903 INFO : 89% Done

11 May 2020 16:08:37,141 INFO : 90% Done

11 May 2020 16:08:37,378 DEBUG: Total peptides inserted: 7

11 May 2020 16:08:37,378 INFO : Inserting ETV1

11 May 2020 16:08:37,382 INFO : 91% Done

11 May 2020 16:08:37,620 INFO : 92% Done

11 May 2020 16:08:37,859 INFO : 93% Done

11 May 2020 16:08:38,096 DEBUG: Total peptides inserted: 3

11 May 2020 16:08:38,096 INFO : Inserting ERG8

11 May 2020 16:08:38,100 INFO : 94% Done

11 May 2020 16:08:38,323 INFO : 95% Done

11 May 2020 16:08:38,529 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:38,529 INFO : Inserting SMAD4

11 May 2020 16:08:38,715 INFO : 96% Done

11 May 2020 16:08:38,862 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:38,862 INFO : Inserting STAT3

11 May 2020 16:08:38,866 INFO : 97% Done

11 May 2020 16:08:39,059 INFO : 98% Done

11 May 2020 16:08:39,268 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:39,268 INFO : Done parsing Skyline document.

11 May 2020 16:08:39,270 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:08:39,422 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:08:40,538 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:08:40,777 INFO : Cleaning up temp tables

11 May 2020 16:08:41,197 INFO : Completed import of Skyline document from CPDR-FFPE-ID-259_2020-01-28_10-29-29.sky.zip

11 May 2020 16:08:41,199 INFO : 100% Done

11 May 2020 16:08:41,212 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80131/CPDR-FFPE-ID-259_2020-01-28_10-29-29.sky.zip into the system

11 May 2020 16:08:41,213 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80130/CPDR-FFPE-ID-256_2020-01-28_10-28-50/CPDR-FFPE-ID-256.skyd into the system

11 May 2020 16:08:41,214 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80130/CPDR-FFPE-ID-256_2020-01-28_10-28-50/CPDR-FFPE-ID-256.skyd into the system

11 May 2020 16:08:41,214 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80130/CPDR-FFPE-ID-256_2020-01-28_10-28-50.sky.zip into the system

11 May 2020 16:08:41,218 INFO : Starting import from CPDR-FFPE-ID-256_2020-01-28_10-28-50.sky.zip

11 May 2020 16:08:41,225 INFO : Starting to import Skyline document from CPDR-FFPE-ID-256_2020-01-28_10-28-50.sky.zip

11 May 2020 16:08:41,243 INFO : Expanding CPDR-FFPE-ID-256.skyd

11 May 2020 16:08:41,711 INFO : Expanding CPDR-FFPE-ID-256.sky.view

11 May 2020 16:08:41,712 INFO : Expanding CPDR-FFPE-ID-256.sky

11 May 2020 16:08:42,406 INFO : Inserting TFF3

11 May 2020 16:08:42,416 INFO : 1% Done

11 May 2020 16:08:42,663 INFO : 2% Done

11 May 2020 16:08:42,900 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:42,900 INFO : Inserting AKT1

11 May 2020 16:08:42,904 INFO : 3% Done

11 May 2020 16:08:43,099 INFO : 4% Done

11 May 2020 16:08:43,335 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:43,335 INFO : Inserting AMACR

11 May 2020 16:08:43,340 INFO : 5% Done

11 May 2020 16:08:43,581 INFO : 6% Done

11 May 2020 16:08:43,820 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:43,820 INFO : Inserting ANDR

11 May 2020 16:08:43,825 INFO : 7% Done

11 May 2020 16:08:44,312 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:44,312 INFO : Inserting ANXA2

11 May 2020 16:08:44,317 INFO : 8% Done

11 May 2020 16:08:44,559 INFO : 9% Done

11 May 2020 16:08:44,800 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:44,800 INFO : Inserting AURKA

11 May 2020 16:08:44,805 INFO : 10% Done

11 May 2020 16:08:45,047 INFO : 11% Done

11 May 2020 16:08:45,286 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:45,286 INFO : Inserting BRAF

11 May 2020 16:08:45,291 INFO : 12% Done

11 May 2020 16:08:45,532 INFO : 13% Done

11 May 2020 16:08:45,770 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:45,770 INFO : Inserting CAMKK2

11 May 2020 16:08:45,775 INFO : 14% Done

11 May 2020 16:08:46,033 INFO : 15% Done

11 May 2020 16:08:46,271 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:46,271 INFO : Inserting CCND1

11 May 2020 16:08:46,276 INFO : 16% Done

11 May 2020 16:08:46,518 INFO : 17% Done

11 May 2020 16:08:46,708 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:46,708 INFO : Inserting CDN1A

11 May 2020 16:08:46,954 INFO : 18% Done

11 May 2020 16:08:47,190 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:47,191 INFO : Inserting CRISP3

11 May 2020 16:08:47,195 INFO : 19% Done

11 May 2020 16:08:47,434 INFO : 20% Done

11 May 2020 16:08:47,644 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:47,644 INFO : Inserting DCOR

11 May 2020 16:08:47,649 INFO : 21% Done

11 May 2020 16:08:47,862 INFO : 22% Done

11 May 2020 16:08:48,075 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:48,075 INFO : Inserting EGFR

11 May 2020 16:08:48,080 INFO : 23% Done

11 May 2020 16:08:48,294 INFO : 24% Done

11 May 2020 16:08:48,464 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:48,464 INFO : Inserting EZH2

11 May 2020 16:08:48,468 INFO : 25% Done

11 May 2020 16:08:48,882 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:48,882 INFO : Inserting FGFR1

11 May 2020 16:08:49,096 INFO : 26% Done

11 May 2020 16:08:49,301 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:49,301 INFO : Inserting FOLH1

11 May 2020 16:08:49,306 INFO : 27% Done

11 May 2020 16:08:49,516 INFO : 28% Done

11 May 2020 16:08:49,730 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:49,731 INFO : Inserting HIF1A

11 May 2020 16:08:49,735 INFO : 29% Done

11 May 2020 16:08:49,957 INFO : 30% Done

11 May 2020 16:08:50,168 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:50,168 INFO : Inserting HPN

11 May 2020 16:08:50,173 INFO : 31% Done

11 May 2020 16:08:50,394 INFO : 32% Done

11 May 2020 16:08:50,610 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:50,610 INFO : Inserting HSPB1

11 May 2020 16:08:50,614 INFO : 33% Done

11 May 2020 16:08:50,827 INFO : 34% Done

11 May 2020 16:08:51,034 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:51,034 INFO : Inserting HXC6

11 May 2020 16:08:51,038 INFO : 35% Done

11 May 2020 16:08:51,253 INFO : 36% Done

11 May 2020 16:08:51,460 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:51,461 INFO : Inserting KLK11

11 May 2020 16:08:51,465 INFO : 37% Done

11 May 2020 16:08:51,895 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:51,895 INFO : Inserting KLK2

11 May 2020 16:08:51,899 INFO : 38% Done

11 May 2020 16:08:52,112 INFO : 39% Done

11 May 2020 16:08:52,324 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:52,324 INFO : Inserting MMP2

11 May 2020 16:08:52,329 INFO : 40% Done

11 May 2020 16:08:52,561 INFO : 41% Done

11 May 2020 16:08:52,789 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:52,789 INFO : Inserting MMP9

11 May 2020 16:08:52,794 INFO : 42% Done

11 May 2020 16:08:53,025 INFO : 43% Done

11 May 2020 16:08:53,317 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:53,318 INFO : Inserting MUC1

11 May 2020 16:08:53,322 INFO : 44% Done

11 May 2020 16:08:53,554 INFO : 45% Done

11 May 2020 16:08:53,788 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:53,788 INFO : Inserting MUC6

11 May 2020 16:08:53,792 INFO : 46% Done

11 May 2020 16:08:54,259 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:54,259 INFO : Inserting MYC

11 May 2020 16:08:54,265 INFO : 47% Done

11 May 2020 16:08:54,565 INFO : 48% Done

11 May 2020 16:08:54,780 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:54,780 INFO : Inserting MYCN

11 May 2020 16:08:54,785 INFO : 49% Done

11 May 2020 16:08:55,000 INFO : 50% Done

11 May 2020 16:08:55,209 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:55,209 INFO : Inserting MYO6

11 May 2020 16:08:55,214 INFO : 51% Done

11 May 2020 16:08:55,427 INFO : 52% Done

11 May 2020 16:08:55,641 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:55,641 INFO : Inserting NCOA2

11 May 2020 16:08:55,646 INFO : 53% Done

11 May 2020 16:08:55,877 INFO : 54% Done

11 May 2020 16:08:56,114 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:56,114 INFO : Inserting NPY

11 May 2020 16:08:56,118 INFO : 55% Done

11 May 2020 16:08:56,346 INFO : 56% Done

11 May 2020 16:08:56,681 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:56,681 INFO : Inserting O51E2

11 May 2020 16:08:56,859 INFO : 57% Done

11 May 2020 16:08:57,090 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:57,090 INFO : Inserting OSTP

11 May 2020 16:08:57,094 INFO : 58% Done

11 May 2020 16:08:57,309 INFO : 59% Done

11 May 2020 16:08:57,519 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:57,520 INFO : Inserting P53

11 May 2020 16:08:57,524 INFO : 60% Done

11 May 2020 16:08:57,735 INFO : 61% Done

11 May 2020 16:08:57,955 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:57,955 INFO : Inserting PAFA

11 May 2020 16:08:57,959 INFO : 62% Done

11 May 2020 16:08:58,187 INFO : 63% Done

11 May 2020 16:08:58,410 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:58,410 INFO : Inserting PGFRB

11 May 2020 16:08:58,608 INFO : 64% Done

11 May 2020 16:08:58,835 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:58,835 INFO : Inserting PK3CA

11 May 2020 16:08:58,839 INFO : 65% Done

11 May 2020 16:08:59,063 INFO : 66% Done

11 May 2020 16:08:59,277 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:59,277 INFO : Inserting RAF1

11 May 2020 16:08:59,281 INFO : 67% Done

11 May 2020 16:08:59,497 INFO : 68% Done

11 May 2020 16:08:59,663 DEBUG: Total peptides inserted: 2

11 May 2020 16:08:59,663 INFO : Inserting SERPINI1

11 May 2020 16:08:59,668 INFO : 69% Done

11 May 2020 16:08:59,888 INFO : 70% Done

11 May 2020 16:09:00,096 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:00,096 INFO : Inserting SPINK1

11 May 2020 16:09:00,101 INFO : 71% Done

11 May 2020 16:09:00,372 INFO : 72% Done

11 May 2020 16:09:00,599 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:00,599 INFO : Inserting SPRC

11 May 2020 16:09:00,604 INFO : 73% Done

11 May 2020 16:09:01,034 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:01,035 INFO : Inserting TGFB1

11 May 2020 16:09:01,039 INFO : 74% Done

11 May 2020 16:09:01,524 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:01,524 INFO : Inserting TMPS2

11 May 2020 16:09:01,529 INFO : 75% Done

11 May 2020 16:09:01,742 INFO : 76% Done

11 May 2020 16:09:01,969 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:01,969 INFO : Inserting TPM2

11 May 2020 16:09:01,974 INFO : 77% Done

11 May 2020 16:09:02,211 INFO : 78% Done

11 May 2020 16:09:02,424 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:02,424 INFO : Inserting TWST1

11 May 2020 16:09:02,428 INFO : 79% Done

11 May 2020 16:09:02,645 INFO : 80% Done

11 May 2020 16:09:02,879 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:02,879 INFO : Inserting VEGFA

11 May 2020 16:09:02,884 INFO : 81% Done

11 May 2020 16:09:03,134 INFO : 82% Done

11 May 2020 16:09:03,367 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:03,367 INFO : Inserting PSA

11 May 2020 16:09:03,372 INFO : 83% Done

11 May 2020 16:09:03,839 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:03,840 INFO : Inserting ERG_pan

11 May 2020 16:09:03,844 INFO : 84% Done

11 May 2020 16:09:04,081 INFO : 85% Done

11 May 2020 16:09:04,318 INFO : 86% Done

11 May 2020 16:09:04,557 INFO : 87% Done

11 May 2020 16:09:04,796 INFO : 88% Done

11 May 2020 16:09:05,033 INFO : 89% Done

11 May 2020 16:09:05,268 INFO : 90% Done

11 May 2020 16:09:05,502 DEBUG: Total peptides inserted: 7

11 May 2020 16:09:05,502 INFO : Inserting ETV1

11 May 2020 16:09:05,506 INFO : 91% Done

11 May 2020 16:09:05,741 INFO : 92% Done

11 May 2020 16:09:05,978 INFO : 93% Done

11 May 2020 16:09:06,211 DEBUG: Total peptides inserted: 3

11 May 2020 16:09:06,211 INFO : Inserting ERG8

11 May 2020 16:09:06,215 INFO : 94% Done

11 May 2020 16:09:06,450 INFO : 95% Done

11 May 2020 16:09:06,682 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:06,682 INFO : Inserting SMAD4

11 May 2020 16:09:06,990 INFO : 96% Done

11 May 2020 16:09:07,180 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:07,180 INFO : Inserting STAT3

11 May 2020 16:09:07,184 INFO : 97% Done

11 May 2020 16:09:07,420 INFO : 98% Done

11 May 2020 16:09:07,651 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:07,652 INFO : Done parsing Skyline document.

11 May 2020 16:09:07,654 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:09:07,806 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:09:08,627 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:09:09,055 INFO : Cleaning up temp tables

11 May 2020 16:09:09,076 INFO : Completed import of Skyline document from CPDR-FFPE-ID-256_2020-01-28_10-28-50.sky.zip

11 May 2020 16:09:09,077 INFO : 100% Done

11 May 2020 16:09:09,090 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80130/CPDR-FFPE-ID-256_2020-01-28_10-28-50.sky.zip into the system

11 May 2020 16:09:09,090 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80128/CPDR-FFPE-ID-310_2020-01-28_10-27-27/CPDR-FFPE-ID-310.skyd into the system

11 May 2020 16:09:09,091 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80128/CPDR-FFPE-ID-310_2020-01-28_10-27-27/CPDR-FFPE-ID-310.skyd into the system

11 May 2020 16:09:09,092 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80128/CPDR-FFPE-ID-310_2020-01-28_10-27-27.sky.zip into the system

11 May 2020 16:09:09,095 INFO : Starting import from CPDR-FFPE-ID-310_2020-01-28_10-27-27.sky.zip

11 May 2020 16:09:09,101 INFO : Starting to import Skyline document from CPDR-FFPE-ID-310_2020-01-28_10-27-27.sky.zip

11 May 2020 16:09:09,116 INFO : Expanding CPDR-FFPE-ID-310.skyd

11 May 2020 16:09:09,545 INFO : Expanding CPDR-FFPE-ID-310.sky.view

11 May 2020 16:09:09,546 INFO : Expanding CPDR-FFPE-ID-310.sky

11 May 2020 16:09:10,181 INFO : Inserting TFF3

11 May 2020 16:09:10,187 INFO : 1% Done

11 May 2020 16:09:10,363 INFO : 2% Done

11 May 2020 16:09:10,535 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:10,535 INFO : Inserting AKT1

11 May 2020 16:09:10,539 INFO : 3% Done

11 May 2020 16:09:10,725 INFO : 4% Done

11 May 2020 16:09:10,948 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:10,948 INFO : Inserting AMACR

11 May 2020 16:09:10,952 INFO : 5% Done

11 May 2020 16:09:11,177 INFO : 6% Done

11 May 2020 16:09:11,402 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:11,402 INFO : Inserting ANDR

11 May 2020 16:09:11,406 INFO : 7% Done

11 May 2020 16:09:11,634 INFO : 8% Done

11 May 2020 16:09:11,860 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:11,860 INFO : Inserting ANXA2

11 May 2020 16:09:12,094 INFO : 9% Done

11 May 2020 16:09:12,324 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:12,324 INFO : Inserting AURKA

11 May 2020 16:09:12,328 INFO : 10% Done

11 May 2020 16:09:12,555 INFO : 11% Done

11 May 2020 16:09:12,793 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:12,794 INFO : Inserting BRAF

11 May 2020 16:09:12,807 INFO : 12% Done

11 May 2020 16:09:13,050 INFO : 13% Done

11 May 2020 16:09:13,292 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:13,292 INFO : Inserting CAMKK2

11 May 2020 16:09:13,297 INFO : 14% Done

11 May 2020 16:09:13,526 INFO : 15% Done

11 May 2020 16:09:13,750 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:13,750 INFO : Inserting CCND1

11 May 2020 16:09:13,755 INFO : 16% Done

11 May 2020 16:09:13,984 INFO : 17% Done

11 May 2020 16:09:14,165 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:14,166 INFO : Inserting CDN1A

11 May 2020 16:09:14,400 INFO : 18% Done

11 May 2020 16:09:14,629 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:14,629 INFO : Inserting CRISP3

11 May 2020 16:09:14,633 INFO : 19% Done

11 May 2020 16:09:14,862 INFO : 20% Done

11 May 2020 16:09:15,082 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:15,082 INFO : Inserting DCOR

11 May 2020 16:09:15,086 INFO : 21% Done

11 May 2020 16:09:15,288 INFO : 22% Done

11 May 2020 16:09:15,486 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:15,486 INFO : Inserting EGFR

11 May 2020 16:09:15,490 INFO : 23% Done

11 May 2020 16:09:15,695 INFO : 24% Done

11 May 2020 16:09:15,855 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:15,855 INFO : Inserting EZH2

11 May 2020 16:09:15,859 INFO : 25% Done

11 May 2020 16:09:16,302 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:16,302 INFO : Inserting FGFR1

11 May 2020 16:09:16,518 INFO : 26% Done

11 May 2020 16:09:16,722 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:16,723 INFO : Inserting FOLH1

11 May 2020 16:09:16,727 INFO : 27% Done

11 May 2020 16:09:16,934 INFO : 28% Done

11 May 2020 16:09:17,178 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:17,178 INFO : Inserting HIF1A

11 May 2020 16:09:17,182 INFO : 29% Done

11 May 2020 16:09:17,387 INFO : 30% Done

11 May 2020 16:09:17,589 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:17,589 INFO : Inserting HPN

11 May 2020 16:09:17,593 INFO : 31% Done

11 May 2020 16:09:17,798 INFO : 32% Done

11 May 2020 16:09:18,001 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:18,001 INFO : Inserting HSPB1

11 May 2020 16:09:18,005 INFO : 33% Done

11 May 2020 16:09:18,217 INFO : 34% Done

11 May 2020 16:09:18,468 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:18,468 INFO : Inserting HXC6

11 May 2020 16:09:18,473 INFO : 35% Done

11 May 2020 16:09:18,683 INFO : 36% Done

11 May 2020 16:09:18,898 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:18,898 INFO : Inserting KLK11

11 May 2020 16:09:19,107 INFO : 37% Done

11 May 2020 16:09:19,316 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:19,316 INFO : Inserting KLK2

11 May 2020 16:09:19,320 INFO : 38% Done

11 May 2020 16:09:19,523 INFO : 39% Done

11 May 2020 16:09:19,729 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:19,729 INFO : Inserting MMP2

11 May 2020 16:09:19,733 INFO : 40% Done

11 May 2020 16:09:19,937 INFO : 41% Done

11 May 2020 16:09:20,098 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:20,098 INFO : Inserting MMP9

11 May 2020 16:09:20,102 INFO : 42% Done

11 May 2020 16:09:20,307 INFO : 43% Done

11 May 2020 16:09:20,509 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:20,509 INFO : Inserting MUC1

11 May 2020 16:09:20,513 INFO : 44% Done

11 May 2020 16:09:20,728 INFO : 45% Done

11 May 2020 16:09:20,930 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:20,930 INFO : Inserting MUC6

11 May 2020 16:09:21,139 INFO : 46% Done

11 May 2020 16:09:21,336 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:21,337 INFO : Inserting MYC

11 May 2020 16:09:21,341 INFO : 47% Done

11 May 2020 16:09:21,542 INFO : 48% Done

11 May 2020 16:09:21,743 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:21,743 INFO : Inserting MYCN

11 May 2020 16:09:21,748 INFO : 49% Done

11 May 2020 16:09:21,952 INFO : 50% Done

11 May 2020 16:09:22,160 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:22,160 INFO : Inserting MYO6

11 May 2020 16:09:22,165 INFO : 51% Done

11 May 2020 16:09:22,372 INFO : 52% Done

11 May 2020 16:09:22,616 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:22,616 INFO : Inserting NCOA2

11 May 2020 16:09:22,621 INFO : 53% Done

11 May 2020 16:09:22,846 INFO : 54% Done

11 May 2020 16:09:23,048 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:23,049 INFO : Inserting NPY

11 May 2020 16:09:23,053 INFO : 55% Done

11 May 2020 16:09:23,256 INFO : 56% Done

11 May 2020 16:09:23,458 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:23,458 INFO : Inserting O51E2

11 May 2020 16:09:23,626 INFO : 57% Done

11 May 2020 16:09:23,832 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:23,832 INFO : Inserting OSTP

11 May 2020 16:09:23,836 INFO : 58% Done

11 May 2020 16:09:24,041 INFO : 59% Done

11 May 2020 16:09:24,242 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:24,242 INFO : Inserting P53

11 May 2020 16:09:24,246 INFO : 60% Done

11 May 2020 16:09:24,453 INFO : 61% Done

11 May 2020 16:09:24,652 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:24,652 INFO : Inserting PAFA

11 May 2020 16:09:24,656 INFO : 62% Done

11 May 2020 16:09:24,861 INFO : 63% Done

11 May 2020 16:09:25,057 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:25,057 INFO : Inserting PGFRB

11 May 2020 16:09:25,221 INFO : 64% Done

11 May 2020 16:09:25,418 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:25,418 INFO : Inserting PK3CA

11 May 2020 16:09:25,422 INFO : 65% Done

11 May 2020 16:09:25,621 INFO : 66% Done

11 May 2020 16:09:25,834 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:25,835 INFO : Inserting RAF1

11 May 2020 16:09:25,839 INFO : 67% Done

11 May 2020 16:09:26,040 INFO : 68% Done

11 May 2020 16:09:26,196 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:26,196 INFO : Inserting SERPINI1

11 May 2020 16:09:26,200 INFO : 69% Done

11 May 2020 16:09:26,398 INFO : 70% Done

11 May 2020 16:09:26,596 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:26,596 INFO : Inserting SPINK1

11 May 2020 16:09:26,600 INFO : 71% Done

11 May 2020 16:09:27,023 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:27,023 INFO : 72% Done

11 May 2020 16:09:27,024 INFO : Inserting SPRC

11 May 2020 16:09:27,227 INFO : 73% Done

11 May 2020 16:09:27,423 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:27,423 INFO : Inserting TGFB1

11 May 2020 16:09:27,427 INFO : 74% Done

11 May 2020 16:09:27,866 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:27,867 INFO : Inserting TMPS2

11 May 2020 16:09:27,871 INFO : 75% Done

11 May 2020 16:09:28,073 INFO : 76% Done

11 May 2020 16:09:28,272 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:28,272 INFO : Inserting TPM2

11 May 2020 16:09:28,277 INFO : 77% Done

11 May 2020 16:09:28,498 INFO : 78% Done

11 May 2020 16:09:28,696 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:28,696 INFO : Inserting TWST1

11 May 2020 16:09:28,701 INFO : 79% Done

11 May 2020 16:09:28,903 INFO : 80% Done

11 May 2020 16:09:29,133 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:29,133 INFO : Inserting VEGFA

11 May 2020 16:09:29,138 INFO : 81% Done

11 May 2020 16:09:29,340 INFO : 82% Done

11 May 2020 16:09:29,565 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:29,566 INFO : Inserting PSA

11 May 2020 16:09:29,570 INFO : 83% Done

11 May 2020 16:09:29,779 INFO : 84% Done

11 May 2020 16:09:29,984 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:29,984 INFO : Inserting ERG_pan

11 May 2020 16:09:30,197 INFO : 85% Done

11 May 2020 16:09:30,408 INFO : 86% Done

11 May 2020 16:09:30,626 INFO : 87% Done

11 May 2020 16:09:30,831 INFO : 88% Done

11 May 2020 16:09:31,044 INFO : 89% Done

11 May 2020 16:09:31,248 INFO : 90% Done

11 May 2020 16:09:31,446 DEBUG: Total peptides inserted: 7

11 May 2020 16:09:31,447 INFO : Inserting ETV1

11 May 2020 16:09:31,451 INFO : 91% Done

11 May 2020 16:09:31,654 INFO : 92% Done

11 May 2020 16:09:31,883 INFO : 93% Done

11 May 2020 16:09:32,087 DEBUG: Total peptides inserted: 3

11 May 2020 16:09:32,087 INFO : Inserting ERG8

11 May 2020 16:09:32,091 INFO : 94% Done

11 May 2020 16:09:32,300 INFO : 95% Done

11 May 2020 16:09:32,523 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:32,523 INFO : Inserting SMAD4

11 May 2020 16:09:32,731 INFO : 96% Done

11 May 2020 16:09:32,891 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:32,891 INFO : Inserting STAT3

11 May 2020 16:09:32,895 INFO : 97% Done

11 May 2020 16:09:33,176 INFO : 98% Done

11 May 2020 16:09:33,381 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:33,381 INFO : Done parsing Skyline document.

11 May 2020 16:09:33,384 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:09:33,531 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:09:34,463 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:09:34,876 INFO : Cleaning up temp tables

11 May 2020 16:09:35,374 INFO : Completed import of Skyline document from CPDR-FFPE-ID-310_2020-01-28_10-27-27.sky.zip

11 May 2020 16:09:35,376 INFO : 100% Done

11 May 2020 16:09:35,389 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80128/CPDR-FFPE-ID-310_2020-01-28_10-27-27.sky.zip into the system

11 May 2020 16:09:35,389 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80186/CPDR-FFPE-ID-316_2020-01-28_11-05-40/CPDR-FFPE-ID-316.skyd into the system

11 May 2020 16:09:35,390 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80186/CPDR-FFPE-ID-316_2020-01-28_11-05-40/CPDR-FFPE-ID-316.skyd into the system

11 May 2020 16:09:35,390 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80186/CPDR-FFPE-ID-316_2020-01-28_11-05-40.sky.zip into the system

11 May 2020 16:09:35,394 INFO : Starting import from CPDR-FFPE-ID-316_2020-01-28_11-05-40.sky.zip

11 May 2020 16:09:35,401 INFO : Starting to import Skyline document from CPDR-FFPE-ID-316_2020-01-28_11-05-40.sky.zip

11 May 2020 16:09:35,419 INFO : Expanding CPDR-FFPE-ID-316.skyd

11 May 2020 16:09:35,855 INFO : Expanding CPDR-FFPE-ID-316.sky.view

11 May 2020 16:09:35,856 INFO : Expanding CPDR-FFPE-ID-316.sky

11 May 2020 16:09:36,307 INFO : Inserting TFF3

11 May 2020 16:09:36,313 INFO : 1% Done

11 May 2020 16:09:36,505 INFO : 2% Done

11 May 2020 16:09:36,704 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:36,704 INFO : Inserting AKT1

11 May 2020 16:09:36,708 INFO : 3% Done

11 May 2020 16:09:36,874 INFO : 4% Done

11 May 2020 16:09:37,074 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:37,075 INFO : Inserting AMACR

11 May 2020 16:09:37,079 INFO : 5% Done

11 May 2020 16:09:37,285 INFO : 6% Done

11 May 2020 16:09:37,490 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:37,490 INFO : Inserting ANDR

11 May 2020 16:09:37,495 INFO : 7% Done

11 May 2020 16:09:37,905 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:37,905 INFO : 8% Done

11 May 2020 16:09:37,905 INFO : Inserting ANXA2

11 May 2020 16:09:38,118 INFO : 9% Done

11 May 2020 16:09:38,319 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:38,320 INFO : Inserting AURKA

11 May 2020 16:09:38,324 INFO : 10% Done

11 May 2020 16:09:38,528 INFO : 11% Done

11 May 2020 16:09:38,728 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:38,728 INFO : Inserting BRAF

11 May 2020 16:09:38,732 INFO : 12% Done

11 May 2020 16:09:38,935 INFO : 13% Done

11 May 2020 16:09:39,141 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:39,141 INFO : Inserting CAMKK2

11 May 2020 16:09:39,145 INFO : 14% Done

11 May 2020 16:09:39,356 INFO : 15% Done

11 May 2020 16:09:39,561 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:39,561 INFO : Inserting CCND1

11 May 2020 16:09:39,565 INFO : 16% Done

11 May 2020 16:09:39,769 INFO : 17% Done

11 May 2020 16:09:39,932 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:39,933 INFO : Inserting CDN1A

11 May 2020 16:09:40,141 INFO : 18% Done

11 May 2020 16:09:40,342 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:40,342 INFO : Inserting CRISP3

11 May 2020 16:09:40,346 INFO : 19% Done

11 May 2020 16:09:40,550 INFO : 20% Done

11 May 2020 16:09:40,749 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:40,749 INFO : Inserting DCOR

11 May 2020 16:09:40,753 INFO : 21% Done

11 May 2020 16:09:40,954 INFO : 22% Done

11 May 2020 16:09:41,152 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:41,152 INFO : Inserting EGFR

11 May 2020 16:09:41,156 INFO : 23% Done

11 May 2020 16:09:41,356 INFO : 24% Done

11 May 2020 16:09:41,518 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:41,518 INFO : Inserting EZH2

11 May 2020 16:09:41,522 INFO : 25% Done

11 May 2020 16:09:41,944 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:41,944 INFO : Inserting FGFR1

11 May 2020 16:09:42,152 INFO : 26% Done

11 May 2020 16:09:42,353 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:42,353 INFO : Inserting FOLH1

11 May 2020 16:09:42,358 INFO : 27% Done

11 May 2020 16:09:42,564 INFO : 28% Done

11 May 2020 16:09:42,763 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:42,763 INFO : Inserting HIF1A

11 May 2020 16:09:42,767 INFO : 29% Done

11 May 2020 16:09:42,995 INFO : 30% Done

11 May 2020 16:09:43,208 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:43,208 INFO : Inserting HPN

11 May 2020 16:09:43,212 INFO : 31% Done

11 May 2020 16:09:43,411 INFO : 32% Done

11 May 2020 16:09:43,611 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:43,611 INFO : Inserting HSPB1

11 May 2020 16:09:43,615 INFO : 33% Done

11 May 2020 16:09:43,830 INFO : 34% Done

11 May 2020 16:09:44,030 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:44,030 INFO : Inserting HXC6

11 May 2020 16:09:44,034 INFO : 35% Done

11 May 2020 16:09:44,235 INFO : 36% Done

11 May 2020 16:09:44,438 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:44,439 INFO : Inserting KLK11

11 May 2020 16:09:44,652 INFO : 37% Done

11 May 2020 16:09:44,858 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:44,858 INFO : Inserting KLK2

11 May 2020 16:09:44,863 INFO : 38% Done

11 May 2020 16:09:45,066 INFO : 39% Done

11 May 2020 16:09:45,266 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:45,266 INFO : Inserting MMP2

11 May 2020 16:09:45,270 INFO : 40% Done

11 May 2020 16:09:45,478 INFO : 41% Done

11 May 2020 16:09:45,644 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:45,645 INFO : Inserting MMP9

11 May 2020 16:09:45,649 INFO : 42% Done

11 May 2020 16:09:45,862 INFO : 43% Done

11 May 2020 16:09:46,064 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:46,064 INFO : Inserting MUC1

11 May 2020 16:09:46,068 INFO : 44% Done

11 May 2020 16:09:46,270 INFO : 45% Done

11 May 2020 16:09:46,471 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:46,471 INFO : Inserting MUC6

11 May 2020 16:09:46,679 INFO : 46% Done

11 May 2020 16:09:46,945 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:46,945 INFO : Inserting MYC

11 May 2020 16:09:46,949 INFO : 47% Done

11 May 2020 16:09:47,157 INFO : 48% Done

11 May 2020 16:09:47,361 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:47,362 INFO : Inserting MYCN

11 May 2020 16:09:47,366 INFO : 49% Done

11 May 2020 16:09:47,569 INFO : 50% Done

11 May 2020 16:09:47,793 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:47,794 INFO : Inserting MYO6

11 May 2020 16:09:47,798 INFO : 51% Done

11 May 2020 16:09:48,020 INFO : 52% Done

11 May 2020 16:09:48,215 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:48,216 INFO : Inserting NCOA2

11 May 2020 16:09:48,220 INFO : 53% Done

11 May 2020 16:09:48,417 INFO : 54% Done

11 May 2020 16:09:48,639 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:48,640 INFO : Inserting NPY

11 May 2020 16:09:48,644 INFO : 55% Done

11 May 2020 16:09:48,856 INFO : 56% Done

11 May 2020 16:09:49,062 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:49,063 INFO : Inserting O51E2

11 May 2020 16:09:49,236 INFO : 57% Done

11 May 2020 16:09:49,443 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:49,443 INFO : Inserting OSTP

11 May 2020 16:09:49,447 INFO : 58% Done

11 May 2020 16:09:49,658 INFO : 59% Done

11 May 2020 16:09:49,862 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:49,862 INFO : Inserting P53

11 May 2020 16:09:49,867 INFO : 60% Done

11 May 2020 16:09:50,073 INFO : 61% Done

11 May 2020 16:09:50,273 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:50,273 INFO : Inserting PAFA

11 May 2020 16:09:50,278 INFO : 62% Done

11 May 2020 16:09:50,484 INFO : 63% Done

11 May 2020 16:09:50,692 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:50,692 INFO : Inserting PGFRB

11 May 2020 16:09:50,863 INFO : 64% Done

11 May 2020 16:09:51,096 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:51,096 INFO : Inserting PK3CA

11 May 2020 16:09:51,101 INFO : 65% Done

11 May 2020 16:09:51,306 INFO : 66% Done

11 May 2020 16:09:51,509 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:51,510 INFO : Inserting RAF1

11 May 2020 16:09:51,514 INFO : 67% Done

11 May 2020 16:09:51,718 INFO : 68% Done

11 May 2020 16:09:51,903 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:51,903 INFO : Inserting SERPINI1

11 May 2020 16:09:51,910 INFO : 69% Done

11 May 2020 16:09:52,141 INFO : 70% Done

11 May 2020 16:09:52,344 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:52,345 INFO : Inserting SPINK1

11 May 2020 16:09:52,349 INFO : 71% Done

11 May 2020 16:09:52,559 INFO : 72% Done

11 May 2020 16:09:52,763 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:52,763 INFO : Inserting SPRC

11 May 2020 16:09:52,767 INFO : 73% Done

11 May 2020 16:09:53,180 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:53,180 INFO : Inserting TGFB1

11 May 2020 16:09:53,184 INFO : 74% Done

11 May 2020 16:09:53,601 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:53,601 INFO : Inserting TMPS2

11 May 2020 16:09:53,608 INFO : 75% Done

11 May 2020 16:09:53,833 INFO : 76% Done

11 May 2020 16:09:54,041 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:54,041 INFO : Inserting TPM2

11 May 2020 16:09:54,045 INFO : 77% Done

11 May 2020 16:09:54,250 INFO : 78% Done

11 May 2020 16:09:54,451 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:54,452 INFO : Inserting TWST1

11 May 2020 16:09:54,456 INFO : 79% Done

11 May 2020 16:09:54,661 INFO : 80% Done

11 May 2020 16:09:54,863 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:54,863 INFO : Inserting VEGFA

11 May 2020 16:09:54,867 INFO : 81% Done

11 May 2020 16:09:55,071 INFO : 82% Done

11 May 2020 16:09:55,275 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:55,275 INFO : Inserting PSA

11 May 2020 16:09:55,279 INFO : 83% Done

11 May 2020 16:09:55,483 INFO : 84% Done

11 May 2020 16:09:55,685 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:55,685 INFO : Inserting ERG_pan

11 May 2020 16:09:55,905 INFO : 85% Done

11 May 2020 16:09:56,116 INFO : 86% Done

11 May 2020 16:09:56,324 INFO : 87% Done

11 May 2020 16:09:56,530 INFO : 88% Done

11 May 2020 16:09:56,735 INFO : 89% Done

11 May 2020 16:09:56,940 INFO : 90% Done

11 May 2020 16:09:57,141 DEBUG: Total peptides inserted: 7

11 May 2020 16:09:57,141 INFO : Inserting ETV1

11 May 2020 16:09:57,146 INFO : 91% Done

11 May 2020 16:09:57,353 INFO : 92% Done

11 May 2020 16:09:57,558 INFO : 93% Done

11 May 2020 16:09:57,790 DEBUG: Total peptides inserted: 3

11 May 2020 16:09:57,790 INFO : Inserting ERG8

11 May 2020 16:09:57,795 INFO : 94% Done

11 May 2020 16:09:58,004 INFO : 95% Done

11 May 2020 16:09:58,223 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:58,224 INFO : Inserting SMAD4

11 May 2020 16:09:58,453 INFO : 96% Done

11 May 2020 16:09:58,631 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:58,631 INFO : Inserting STAT3

11 May 2020 16:09:58,635 INFO : 97% Done

11 May 2020 16:09:58,855 INFO : 98% Done

11 May 2020 16:09:59,057 DEBUG: Total peptides inserted: 2

11 May 2020 16:09:59,057 INFO : Done parsing Skyline document.

11 May 2020 16:09:59,059 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:09:59,205 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:10:00,039 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:10:00,214 INFO : Cleaning up temp tables

11 May 2020 16:10:00,604 INFO : Completed import of Skyline document from CPDR-FFPE-ID-316_2020-01-28_11-05-40.sky.zip

11 May 2020 16:10:00,606 INFO : 100% Done

11 May 2020 16:10:00,618 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80186/CPDR-FFPE-ID-316_2020-01-28_11-05-40.sky.zip into the system

11 May 2020 16:10:00,619 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80168/CPDR-FFPE-ID-86_2020-01-28_10-52-55/CPDR-FFPE-ID-86.skyd into the system

11 May 2020 16:10:00,620 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80168/CPDR-FFPE-ID-86_2020-01-28_10-52-55/CPDR-FFPE-ID-86.skyd into the system

11 May 2020 16:10:00,620 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80168/CPDR-FFPE-ID-86_2020-01-28_10-52-55.sky.zip into the system

11 May 2020 16:10:00,625 INFO : Starting import from CPDR-FFPE-ID-86_2020-01-28_10-52-55.sky.zip

11 May 2020 16:10:00,633 INFO : Starting to import Skyline document from CPDR-FFPE-ID-86_2020-01-28_10-52-55.sky.zip

11 May 2020 16:10:00,650 INFO : Expanding CPDR-FFPE-ID-86.skyd

11 May 2020 16:10:01,084 INFO : Expanding CPDR-FFPE-ID-86.sky.view

11 May 2020 16:10:01,084 INFO : Expanding CPDR-FFPE-ID-86.sky

11 May 2020 16:10:01,634 INFO : Inserting TFF3

11 May 2020 16:10:01,642 INFO : 1% Done

11 May 2020 16:10:01,837 INFO : 2% Done

11 May 2020 16:10:02,026 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:02,026 INFO : Inserting AKT1

11 May 2020 16:10:02,030 INFO : 3% Done

11 May 2020 16:10:02,198 INFO : 4% Done

11 May 2020 16:10:02,401 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:02,401 INFO : Inserting AMACR

11 May 2020 16:10:02,405 INFO : 5% Done

11 May 2020 16:10:02,611 INFO : 6% Done

11 May 2020 16:10:02,814 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:02,814 INFO : Inserting ANDR

11 May 2020 16:10:02,818 INFO : 7% Done

11 May 2020 16:10:03,024 INFO : 8% Done

11 May 2020 16:10:03,228 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:03,228 INFO : Inserting ANXA2

11 May 2020 16:10:03,457 INFO : 9% Done

11 May 2020 16:10:03,659 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:03,660 INFO : Inserting AURKA

11 May 2020 16:10:03,664 INFO : 10% Done

11 May 2020 16:10:03,869 INFO : 11% Done

11 May 2020 16:10:04,070 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:04,070 INFO : Inserting BRAF

11 May 2020 16:10:04,074 INFO : 12% Done

11 May 2020 16:10:04,280 INFO : 13% Done

11 May 2020 16:10:04,482 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:04,482 INFO : Inserting CAMKK2

11 May 2020 16:10:04,486 INFO : 14% Done

11 May 2020 16:10:04,689 INFO : 15% Done

11 May 2020 16:10:04,888 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:04,889 INFO : Inserting CCND1

11 May 2020 16:10:04,893 INFO : 16% Done

11 May 2020 16:10:05,257 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:05,257 INFO : 17% Done

11 May 2020 16:10:05,257 INFO : Inserting CDN1A

11 May 2020 16:10:05,466 INFO : 18% Done

11 May 2020 16:10:05,667 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:05,667 INFO : Inserting CRISP3

11 May 2020 16:10:05,672 INFO : 19% Done

11 May 2020 16:10:05,876 INFO : 20% Done

11 May 2020 16:10:06,078 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:06,078 INFO : Inserting DCOR

11 May 2020 16:10:06,082 INFO : 21% Done

11 May 2020 16:10:06,288 INFO : 22% Done

11 May 2020 16:10:06,489 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:06,489 INFO : Inserting EGFR

11 May 2020 16:10:06,493 INFO : 23% Done

11 May 2020 16:10:06,696 INFO : 24% Done

11 May 2020 16:10:06,857 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:06,857 INFO : Inserting EZH2

11 May 2020 16:10:06,862 INFO : 25% Done

11 May 2020 16:10:07,278 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:07,279 INFO : Inserting FGFR1

11 May 2020 16:10:07,493 INFO : 26% Done

11 May 2020 16:10:07,699 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:07,699 INFO : Inserting FOLH1

11 May 2020 16:10:07,704 INFO : 27% Done

11 May 2020 16:10:07,919 INFO : 28% Done

11 May 2020 16:10:08,155 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:08,155 INFO : Inserting HIF1A

11 May 2020 16:10:08,159 INFO : 29% Done

11 May 2020 16:10:08,361 INFO : 30% Done

11 May 2020 16:10:08,561 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:08,562 INFO : Inserting HPN

11 May 2020 16:10:08,566 INFO : 31% Done

11 May 2020 16:10:08,771 INFO : 32% Done

11 May 2020 16:10:08,975 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:08,975 INFO : Inserting HSPB1

11 May 2020 16:10:08,980 INFO : 33% Done

11 May 2020 16:10:09,187 INFO : 34% Done

11 May 2020 16:10:09,388 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:09,388 INFO : Inserting HXC6

11 May 2020 16:10:09,393 INFO : 35% Done

11 May 2020 16:10:09,598 INFO : 36% Done

11 May 2020 16:10:09,806 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:09,806 INFO : Inserting KLK11

11 May 2020 16:10:10,032 INFO : 37% Done

11 May 2020 16:10:10,255 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:10,256 INFO : Inserting KLK2

11 May 2020 16:10:10,260 INFO : 38% Done

11 May 2020 16:10:10,482 INFO : 39% Done

11 May 2020 16:10:10,694 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:10,694 INFO : Inserting MMP2

11 May 2020 16:10:10,698 INFO : 40% Done

11 May 2020 16:10:10,905 INFO : 41% Done

11 May 2020 16:10:11,066 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:11,066 INFO : Inserting MMP9

11 May 2020 16:10:11,070 INFO : 42% Done

11 May 2020 16:10:11,282 INFO : 43% Done

11 May 2020 16:10:11,498 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:11,498 INFO : Inserting MUC1

11 May 2020 16:10:11,502 INFO : 44% Done

11 May 2020 16:10:11,706 INFO : 45% Done

11 May 2020 16:10:11,935 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:11,936 INFO : Inserting MUC6

11 May 2020 16:10:12,167 INFO : 46% Done

11 May 2020 16:10:12,375 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:12,375 INFO : Inserting MYC

11 May 2020 16:10:12,379 INFO : 47% Done

11 May 2020 16:10:12,583 INFO : 48% Done

11 May 2020 16:10:12,784 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:12,784 INFO : Inserting MYCN

11 May 2020 16:10:12,789 INFO : 49% Done

11 May 2020 16:10:12,995 INFO : 50% Done

11 May 2020 16:10:13,195 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:13,195 INFO : Inserting MYO6

11 May 2020 16:10:13,200 INFO : 51% Done

11 May 2020 16:10:13,405 INFO : 52% Done

11 May 2020 16:10:13,608 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:13,608 INFO : Inserting NCOA2

11 May 2020 16:10:13,612 INFO : 53% Done

11 May 2020 16:10:13,822 INFO : 54% Done

11 May 2020 16:10:14,030 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:14,030 INFO : Inserting NPY

11 May 2020 16:10:14,035 INFO : 55% Done

11 May 2020 16:10:14,240 INFO : 56% Done

11 May 2020 16:10:14,441 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:14,441 INFO : Inserting O51E2

11 May 2020 16:10:14,607 INFO : 57% Done

11 May 2020 16:10:14,805 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:14,805 INFO : Inserting OSTP

11 May 2020 16:10:14,810 INFO : 58% Done

11 May 2020 16:10:15,074 INFO : 59% Done

11 May 2020 16:10:15,277 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:15,277 INFO : Inserting P53

11 May 2020 16:10:15,281 INFO : 60% Done

11 May 2020 16:10:15,487 INFO : 61% Done

11 May 2020 16:10:15,689 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:15,689 INFO : Inserting PAFA

11 May 2020 16:10:15,693 INFO : 62% Done

11 May 2020 16:10:15,919 INFO : 63% Done

11 May 2020 16:10:16,137 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:16,137 INFO : Inserting PGFRB

11 May 2020 16:10:16,324 INFO : 64% Done

11 May 2020 16:10:16,542 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:16,542 INFO : Inserting PK3CA

11 May 2020 16:10:16,546 INFO : 65% Done

11 May 2020 16:10:16,756 INFO : 66% Done

11 May 2020 16:10:16,957 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:16,957 INFO : Inserting RAF1

11 May 2020 16:10:16,961 INFO : 67% Done

11 May 2020 16:10:17,171 INFO : 68% Done

11 May 2020 16:10:17,332 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:17,332 INFO : Inserting SERPINI1

11 May 2020 16:10:17,337 INFO : 69% Done

11 May 2020 16:10:17,543 INFO : 70% Done

11 May 2020 16:10:17,733 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:17,733 INFO : Inserting SPINK1

11 May 2020 16:10:17,737 INFO : 71% Done

11 May 2020 16:10:17,972 INFO : 72% Done

11 May 2020 16:10:18,173 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:18,173 INFO : Inserting SPRC

11 May 2020 16:10:18,177 INFO : 73% Done

11 May 2020 16:10:18,586 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:18,586 INFO : Inserting TGFB1

11 May 2020 16:10:18,590 INFO : 74% Done

11 May 2020 16:10:18,997 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:18,997 INFO : Inserting TMPS2

11 May 2020 16:10:19,001 INFO : 75% Done

11 May 2020 16:10:19,228 INFO : 76% Done

11 May 2020 16:10:19,438 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:19,438 INFO : Inserting TPM2

11 May 2020 16:10:19,442 INFO : 77% Done

11 May 2020 16:10:19,650 INFO : 78% Done

11 May 2020 16:10:19,867 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:19,867 INFO : Inserting TWST1

11 May 2020 16:10:19,871 INFO : 79% Done

11 May 2020 16:10:20,080 INFO : 80% Done

11 May 2020 16:10:20,280 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:20,280 INFO : Inserting VEGFA

11 May 2020 16:10:20,284 INFO : 81% Done

11 May 2020 16:10:20,487 INFO : 82% Done

11 May 2020 16:10:20,687 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:20,687 INFO : Inserting PSA

11 May 2020 16:10:20,691 INFO : 83% Done

11 May 2020 16:10:21,113 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:21,113 INFO : Inserting ERG_pan

11 May 2020 16:10:21,117 INFO : 84% Done

11 May 2020 16:10:21,323 INFO : 85% Done

11 May 2020 16:10:21,535 INFO : 86% Done

11 May 2020 16:10:21,740 INFO : 87% Done

11 May 2020 16:10:21,954 INFO : 88% Done

11 May 2020 16:10:22,161 INFO : 89% Done

11 May 2020 16:10:22,365 INFO : 90% Done

11 May 2020 16:10:22,567 DEBUG: Total peptides inserted: 7

11 May 2020 16:10:22,567 INFO : Inserting ETV1

11 May 2020 16:10:22,571 INFO : 91% Done

11 May 2020 16:10:22,774 INFO : 92% Done

11 May 2020 16:10:22,978 INFO : 93% Done

11 May 2020 16:10:23,179 DEBUG: Total peptides inserted: 3

11 May 2020 16:10:23,179 INFO : Inserting ERG8

11 May 2020 16:10:23,183 INFO : 94% Done

11 May 2020 16:10:23,385 INFO : 95% Done

11 May 2020 16:10:23,657 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:23,657 INFO : Inserting SMAD4

11 May 2020 16:10:23,880 INFO : 96% Done

11 May 2020 16:10:24,062 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:24,062 INFO : Inserting STAT3

11 May 2020 16:10:24,066 INFO : 97% Done

11 May 2020 16:10:24,294 INFO : 98% Done

11 May 2020 16:10:24,519 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:24,519 INFO : Done parsing Skyline document.

11 May 2020 16:10:24,521 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:10:24,668 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:10:25,628 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:10:25,834 INFO : Cleaning up temp tables

11 May 2020 16:10:26,138 INFO : Completed import of Skyline document from CPDR-FFPE-ID-86_2020-01-28_10-52-55.sky.zip

11 May 2020 16:10:26,139 INFO : 100% Done

11 May 2020 16:10:26,145 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80168/CPDR-FFPE-ID-86_2020-01-28_10-52-55.sky.zip into the system

11 May 2020 16:10:26,145 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80164/CPDR-FFPE-ID-364_2020-01-28_10-50-14/CPDR-FFPE-ID-364.skyd into the system

11 May 2020 16:10:26,146 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80164/CPDR-FFPE-ID-364_2020-01-28_10-50-14/CPDR-FFPE-ID-364.skyd into the system

11 May 2020 16:10:26,146 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80164/CPDR-FFPE-ID-364_2020-01-28_10-50-14.sky.zip into the system

11 May 2020 16:10:26,148 INFO : Starting import from CPDR-FFPE-ID-364_2020-01-28_10-50-14.sky.zip

11 May 2020 16:10:26,150 INFO : Starting to import Skyline document from CPDR-FFPE-ID-364_2020-01-28_10-50-14.sky.zip

11 May 2020 16:10:26,160 INFO : Expanding CPDR-FFPE-ID-364.skyd

11 May 2020 16:10:26,354 INFO : Expanding CPDR-FFPE-ID-364.sky.view

11 May 2020 16:10:26,354 INFO : Expanding CPDR-FFPE-ID-364.sky

11 May 2020 16:10:26,674 INFO : Inserting TFF3

11 May 2020 16:10:26,678 INFO : 1% Done

11 May 2020 16:10:26,773 INFO : 2% Done

11 May 2020 16:10:26,863 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:26,863 INFO : Inserting AKT1

11 May 2020 16:10:26,865 INFO : 3% Done

11 May 2020 16:10:26,987 INFO : 4% Done

11 May 2020 16:10:27,155 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:27,156 INFO : Inserting AMACR

11 May 2020 16:10:27,160 INFO : 5% Done

11 May 2020 16:10:27,373 INFO : 6% Done

11 May 2020 16:10:27,583 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:27,583 INFO : Inserting ANDR

11 May 2020 16:10:27,587 INFO : 7% Done

11 May 2020 16:10:28,020 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:28,020 INFO : Inserting ANXA2

11 May 2020 16:10:28,024 INFO : 8% Done

11 May 2020 16:10:28,267 INFO : 9% Done

11 May 2020 16:10:28,502 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:28,502 INFO : Inserting AURKA

11 May 2020 16:10:28,507 INFO : 10% Done

11 May 2020 16:10:28,744 INFO : 11% Done

11 May 2020 16:10:28,980 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:28,980 INFO : Inserting BRAF

11 May 2020 16:10:28,984 INFO : 12% Done

11 May 2020 16:10:29,222 INFO : 13% Done

11 May 2020 16:10:29,457 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:29,457 INFO : Inserting CAMKK2

11 May 2020 16:10:29,462 INFO : 14% Done

11 May 2020 16:10:29,700 INFO : 15% Done

11 May 2020 16:10:29,934 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:29,934 INFO : Inserting CCND1

11 May 2020 16:10:29,939 INFO : 16% Done

11 May 2020 16:10:30,179 INFO : 17% Done

11 May 2020 16:10:30,366 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:30,366 INFO : Inserting CDN1A

11 May 2020 16:10:30,585 INFO : 18% Done

11 May 2020 16:10:30,795 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:30,795 INFO : Inserting CRISP3

11 May 2020 16:10:30,799 INFO : 19% Done

11 May 2020 16:10:31,010 INFO : 20% Done

11 May 2020 16:10:31,222 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:31,222 INFO : Inserting DCOR

11 May 2020 16:10:31,226 INFO : 21% Done

11 May 2020 16:10:31,439 INFO : 22% Done

11 May 2020 16:10:31,651 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:31,651 INFO : Inserting EGFR

11 May 2020 16:10:31,656 INFO : 23% Done

11 May 2020 16:10:31,978 INFO : 24% Done

11 May 2020 16:10:32,146 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:32,146 INFO : Inserting EZH2

11 May 2020 16:10:32,151 INFO : 25% Done

11 May 2020 16:10:32,611 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:32,611 INFO : Inserting FGFR1

11 May 2020 16:10:32,854 INFO : 26% Done

11 May 2020 16:10:33,108 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:33,108 INFO : Inserting FOLH1

11 May 2020 16:10:33,112 INFO : 27% Done

11 May 2020 16:10:33,325 INFO : 28% Done

11 May 2020 16:10:33,530 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:33,530 INFO : Inserting HIF1A

11 May 2020 16:10:33,535 INFO : 29% Done

11 May 2020 16:10:33,744 INFO : 30% Done

11 May 2020 16:10:33,947 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:33,947 INFO : Inserting HPN

11 May 2020 16:10:33,951 INFO : 31% Done

11 May 2020 16:10:34,240 INFO : 32% Done

11 May 2020 16:10:34,491 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:34,492 INFO : Inserting HSPB1

11 May 2020 16:10:34,496 INFO : 33% Done

11 May 2020 16:10:34,707 INFO : 34% Done

11 May 2020 16:10:34,941 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:34,942 INFO : Inserting HXC6

11 May 2020 16:10:34,946 INFO : 35% Done

11 May 2020 16:10:35,159 INFO : 36% Done

11 May 2020 16:10:35,363 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:35,363 INFO : Inserting KLK11

11 May 2020 16:10:35,577 INFO : 37% Done

11 May 2020 16:10:35,850 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:35,851 INFO : Inserting KLK2

11 May 2020 16:10:35,855 INFO : 38% Done

11 May 2020 16:10:36,064 INFO : 39% Done

11 May 2020 16:10:36,273 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:36,273 INFO : Inserting MMP2

11 May 2020 16:10:36,277 INFO : 40% Done

11 May 2020 16:10:36,564 INFO : 41% Done

11 May 2020 16:10:36,732 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:36,732 INFO : Inserting MMP9

11 May 2020 16:10:36,736 INFO : 42% Done

11 May 2020 16:10:36,947 INFO : 43% Done

11 May 2020 16:10:37,155 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:37,155 INFO : Inserting MUC1

11 May 2020 16:10:37,160 INFO : 44% Done

11 May 2020 16:10:37,375 INFO : 45% Done

11 May 2020 16:10:37,586 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:37,586 INFO : Inserting MUC6

11 May 2020 16:10:37,590 INFO : 46% Done

11 May 2020 16:10:38,011 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:38,011 INFO : Inserting MYC

11 May 2020 16:10:38,016 INFO : 47% Done

11 May 2020 16:10:38,224 INFO : 48% Done

11 May 2020 16:10:38,431 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:38,431 INFO : Inserting MYCN

11 May 2020 16:10:38,435 INFO : 49% Done

11 May 2020 16:10:38,705 INFO : 50% Done

11 May 2020 16:10:38,913 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:38,913 INFO : Inserting MYO6

11 May 2020 16:10:38,918 INFO : 51% Done

11 May 2020 16:10:39,127 INFO : 52% Done

11 May 2020 16:10:39,331 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:39,332 INFO : Inserting NCOA2

11 May 2020 16:10:39,336 INFO : 53% Done

11 May 2020 16:10:39,544 INFO : 54% Done

11 May 2020 16:10:39,751 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:39,751 INFO : Inserting NPY

11 May 2020 16:10:39,755 INFO : 55% Done

11 May 2020 16:10:39,965 INFO : 56% Done

11 May 2020 16:10:40,180 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:40,180 INFO : Inserting O51E2

11 May 2020 16:10:40,357 INFO : 57% Done

11 May 2020 16:10:40,563 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:40,564 INFO : Inserting OSTP

11 May 2020 16:10:40,568 INFO : 58% Done

11 May 2020 16:10:40,777 INFO : 59% Done

11 May 2020 16:10:40,985 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:40,985 INFO : Inserting P53

11 May 2020 16:10:40,989 INFO : 60% Done

11 May 2020 16:10:41,205 INFO : 61% Done

11 May 2020 16:10:41,415 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:41,415 INFO : Inserting PAFA

11 May 2020 16:10:41,419 INFO : 62% Done

11 May 2020 16:10:41,630 INFO : 63% Done

11 May 2020 16:10:41,838 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:41,839 INFO : Inserting PGFRB

11 May 2020 16:10:42,010 INFO : 64% Done

11 May 2020 16:10:42,221 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:42,221 INFO : Inserting PK3CA

11 May 2020 16:10:42,225 INFO : 65% Done

11 May 2020 16:10:42,438 INFO : 66% Done

11 May 2020 16:10:42,647 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:42,648 INFO : Inserting RAF1

11 May 2020 16:10:42,652 INFO : 67% Done

11 May 2020 16:10:42,889 INFO : 68% Done

11 May 2020 16:10:43,057 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:43,057 INFO : Inserting SERPINI1

11 May 2020 16:10:43,062 INFO : 69% Done

11 May 2020 16:10:43,285 INFO : 70% Done

11 May 2020 16:10:43,494 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:43,494 INFO : Inserting SPINK1

11 May 2020 16:10:43,499 INFO : 71% Done

11 May 2020 16:10:43,717 INFO : 72% Done

11 May 2020 16:10:43,926 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:43,926 INFO : Inserting SPRC

11 May 2020 16:10:43,930 INFO : 73% Done

11 May 2020 16:10:44,155 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:44,155 INFO : Inserting TGFB1

11 May 2020 16:10:44,157 INFO : 74% Done

11 May 2020 16:10:44,328 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:44,328 INFO : Inserting TMPS2

11 May 2020 16:10:44,329 INFO : 75% Done

11 May 2020 16:10:44,417 INFO : 76% Done

11 May 2020 16:10:44,508 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:44,508 INFO : Inserting TPM2

11 May 2020 16:10:44,510 INFO : 77% Done

11 May 2020 16:10:44,711 INFO : 78% Done

11 May 2020 16:10:44,917 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:44,918 INFO : Inserting TWST1

11 May 2020 16:10:44,922 INFO : 79% Done

11 May 2020 16:10:45,134 INFO : 80% Done

11 May 2020 16:10:45,341 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:45,341 INFO : Inserting VEGFA

11 May 2020 16:10:45,346 INFO : 81% Done

11 May 2020 16:10:45,557 INFO : 82% Done

11 May 2020 16:10:45,767 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:45,767 INFO : Inserting PSA

11 May 2020 16:10:45,772 INFO : 83% Done

11 May 2020 16:10:46,243 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:46,243 INFO : Inserting ERG_pan

11 May 2020 16:10:46,247 INFO : 84% Done

11 May 2020 16:10:46,489 INFO : 85% Done

11 May 2020 16:10:46,737 INFO : 86% Done

11 May 2020 16:10:46,994 INFO : 87% Done

11 May 2020 16:10:47,234 INFO : 88% Done

11 May 2020 16:10:47,475 INFO : 89% Done

11 May 2020 16:10:47,716 INFO : 90% Done

11 May 2020 16:10:47,954 DEBUG: Total peptides inserted: 7

11 May 2020 16:10:47,954 INFO : Inserting ETV1

11 May 2020 16:10:47,958 INFO : 91% Done

11 May 2020 16:10:48,199 INFO : 92% Done

11 May 2020 16:10:48,443 INFO : 93% Done

11 May 2020 16:10:48,683 DEBUG: Total peptides inserted: 3

11 May 2020 16:10:48,683 INFO : Inserting ERG8

11 May 2020 16:10:48,688 INFO : 94% Done

11 May 2020 16:10:48,931 INFO : 95% Done

11 May 2020 16:10:49,175 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:49,175 INFO : Inserting SMAD4

11 May 2020 16:10:49,420 INFO : 96% Done

11 May 2020 16:10:49,612 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:49,613 INFO : Inserting STAT3

11 May 2020 16:10:49,617 INFO : 97% Done

11 May 2020 16:10:49,860 INFO : 98% Done

11 May 2020 16:10:50,076 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:50,076 INFO : Done parsing Skyline document.

11 May 2020 16:10:50,079 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:10:50,231 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:10:51,096 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:10:51,298 INFO : Cleaning up temp tables

11 May 2020 16:10:51,300 INFO : Completed import of Skyline document from CPDR-FFPE-ID-364_2020-01-28_10-50-14.sky.zip

11 May 2020 16:10:51,312 INFO : 100% Done

11 May 2020 16:10:51,317 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80164/CPDR-FFPE-ID-364_2020-01-28_10-50-14.sky.zip into the system

11 May 2020 16:10:51,317 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80163/CPDR-FFPE-ID-363_2020-01-28_10-49-36/CPDR-FFPE-ID-363.skyd into the system

11 May 2020 16:10:51,318 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80163/CPDR-FFPE-ID-363_2020-01-28_10-49-36/CPDR-FFPE-ID-363.skyd into the system

11 May 2020 16:10:51,318 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80163/CPDR-FFPE-ID-363_2020-01-28_10-49-36.sky.zip into the system

11 May 2020 16:10:51,320 INFO : Starting import from CPDR-FFPE-ID-363_2020-01-28_10-49-36.sky.zip

11 May 2020 16:10:51,323 INFO : Starting to import Skyline document from CPDR-FFPE-ID-363_2020-01-28_10-49-36.sky.zip

11 May 2020 16:10:51,330 INFO : Expanding CPDR-FFPE-ID-363.skyd

11 May 2020 16:10:51,517 INFO : Expanding CPDR-FFPE-ID-363.sky.view

11 May 2020 16:10:51,518 INFO : Expanding CPDR-FFPE-ID-363.sky

11 May 2020 16:10:52,094 INFO : Inserting TFF3

11 May 2020 16:10:52,098 INFO : 1% Done

11 May 2020 16:10:52,186 INFO : 2% Done

11 May 2020 16:10:52,271 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:52,271 INFO : Inserting AKT1

11 May 2020 16:10:52,272 INFO : 3% Done

11 May 2020 16:10:52,341 INFO : 4% Done

11 May 2020 16:10:52,424 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:52,424 INFO : Inserting AMACR

11 May 2020 16:10:52,426 INFO : 5% Done

11 May 2020 16:10:52,512 INFO : 6% Done

11 May 2020 16:10:52,715 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:52,715 INFO : Inserting ANDR

11 May 2020 16:10:52,719 INFO : 7% Done

11 May 2020 16:10:53,147 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:53,147 INFO : Inserting ANXA2

11 May 2020 16:10:53,152 INFO : 8% Done

11 May 2020 16:10:53,365 INFO : 9% Done

11 May 2020 16:10:53,574 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:53,574 INFO : Inserting AURKA

11 May 2020 16:10:53,578 INFO : 10% Done

11 May 2020 16:10:53,789 INFO : 11% Done

11 May 2020 16:10:53,997 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:53,997 INFO : Inserting BRAF

11 May 2020 16:10:54,002 INFO : 12% Done

11 May 2020 16:10:54,213 INFO : 13% Done

11 May 2020 16:10:54,423 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:54,423 INFO : Inserting CAMKK2

11 May 2020 16:10:54,427 INFO : 14% Done

11 May 2020 16:10:54,644 INFO : 15% Done

11 May 2020 16:10:54,851 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:54,851 INFO : Inserting CCND1

11 May 2020 16:10:54,856 INFO : 16% Done

11 May 2020 16:10:55,066 INFO : 17% Done

11 May 2020 16:10:55,236 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:55,236 INFO : Inserting CDN1A

11 May 2020 16:10:55,452 INFO : 18% Done

11 May 2020 16:10:55,661 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:55,661 INFO : Inserting CRISP3

11 May 2020 16:10:55,665 INFO : 19% Done

11 May 2020 16:10:55,878 INFO : 20% Done

11 May 2020 16:10:56,090 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:56,090 INFO : Inserting DCOR

11 May 2020 16:10:56,094 INFO : 21% Done

11 May 2020 16:10:56,313 INFO : 22% Done

11 May 2020 16:10:56,530 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:56,530 INFO : Inserting EGFR

11 May 2020 16:10:56,535 INFO : 23% Done

11 May 2020 16:10:56,771 INFO : 24% Done

11 May 2020 16:10:56,957 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:56,957 INFO : Inserting EZH2

11 May 2020 16:10:56,961 INFO : 25% Done

11 May 2020 16:10:57,418 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:57,418 INFO : Inserting FGFR1

11 May 2020 16:10:57,634 INFO : 26% Done

11 May 2020 16:10:57,844 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:57,844 INFO : Inserting FOLH1

11 May 2020 16:10:57,848 INFO : 27% Done

11 May 2020 16:10:58,061 INFO : 28% Done

11 May 2020 16:10:58,268 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:58,268 INFO : Inserting HIF1A

11 May 2020 16:10:58,273 INFO : 29% Done

11 May 2020 16:10:58,482 INFO : 30% Done

11 May 2020 16:10:58,719 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:58,719 INFO : Inserting HPN

11 May 2020 16:10:58,724 INFO : 31% Done

11 May 2020 16:10:58,939 INFO : 32% Done

11 May 2020 16:10:59,149 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:59,150 INFO : Inserting HSPB1

11 May 2020 16:10:59,154 INFO : 33% Done

11 May 2020 16:10:59,365 INFO : 34% Done

11 May 2020 16:10:59,570 DEBUG: Total peptides inserted: 2

11 May 2020 16:10:59,570 INFO : Inserting HXC6

11 May 2020 16:10:59,574 INFO : 35% Done

11 May 2020 16:10:59,804 INFO : 36% Done

11 May 2020 16:11:00,031 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:00,031 INFO : Inserting KLK11

11 May 2020 16:11:00,252 INFO : 37% Done

11 May 2020 16:11:00,479 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:00,479 INFO : Inserting KLK2

11 May 2020 16:11:00,483 INFO : 38% Done

11 May 2020 16:11:00,695 INFO : 39% Done

11 May 2020 16:11:00,927 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:00,928 INFO : Inserting MMP2

11 May 2020 16:11:00,932 INFO : 40% Done

11 May 2020 16:11:01,176 INFO : 41% Done

11 May 2020 16:11:01,365 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:01,365 INFO : Inserting MMP9

11 May 2020 16:11:01,370 INFO : 42% Done

11 May 2020 16:11:01,611 INFO : 43% Done

11 May 2020 16:11:01,844 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:01,845 INFO : Inserting MUC1

11 May 2020 16:11:01,849 INFO : 44% Done

11 May 2020 16:11:02,064 INFO : 45% Done

11 May 2020 16:11:02,273 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:02,273 INFO : Inserting MUC6

11 May 2020 16:11:02,277 INFO : 46% Done

11 May 2020 16:11:02,708 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:02,708 INFO : Inserting MYC

11 May 2020 16:11:02,713 INFO : 47% Done

11 May 2020 16:11:02,939 INFO : 48% Done

11 May 2020 16:11:03,170 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:03,170 INFO : Inserting MYCN

11 May 2020 16:11:03,175 INFO : 49% Done

11 May 2020 16:11:03,397 INFO : 50% Done

11 May 2020 16:11:03,610 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:03,610 INFO : Inserting MYO6

11 May 2020 16:11:03,614 INFO : 51% Done

11 May 2020 16:11:03,831 INFO : 52% Done

11 May 2020 16:11:04,042 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:04,042 INFO : Inserting NCOA2

11 May 2020 16:11:04,047 INFO : 53% Done

11 May 2020 16:11:04,263 INFO : 54% Done

11 May 2020 16:11:04,473 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:04,474 INFO : Inserting NPY

11 May 2020 16:11:04,478 INFO : 55% Done

11 May 2020 16:11:04,775 INFO : 56% Done

11 May 2020 16:11:04,986 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:04,986 INFO : Inserting O51E2

11 May 2020 16:11:05,165 INFO : 57% Done

11 May 2020 16:11:05,409 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:05,409 INFO : Inserting OSTP

11 May 2020 16:11:05,413 INFO : 58% Done

11 May 2020 16:11:05,632 INFO : 59% Done

11 May 2020 16:11:05,841 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:05,841 INFO : Inserting P53

11 May 2020 16:11:05,846 INFO : 60% Done

11 May 2020 16:11:06,057 INFO : 61% Done

11 May 2020 16:11:06,248 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:06,249 INFO : Inserting PAFA

11 May 2020 16:11:06,253 INFO : 62% Done

11 May 2020 16:11:06,453 INFO : 63% Done

11 May 2020 16:11:06,668 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:06,668 INFO : Inserting PGFRB

11 May 2020 16:11:06,864 INFO : 64% Done

11 May 2020 16:11:07,101 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:07,101 INFO : Inserting PK3CA

11 May 2020 16:11:07,105 INFO : 65% Done

11 May 2020 16:11:07,346 INFO : 66% Done

11 May 2020 16:11:07,571 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:07,571 INFO : Inserting RAF1

11 May 2020 16:11:07,575 INFO : 67% Done

11 May 2020 16:11:07,786 INFO : 68% Done

11 May 2020 16:11:07,950 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:07,950 INFO : Inserting SERPINI1

11 May 2020 16:11:07,954 INFO : 69% Done

11 May 2020 16:11:08,162 INFO : 70% Done

11 May 2020 16:11:08,367 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:08,367 INFO : Inserting SPINK1

11 May 2020 16:11:08,371 INFO : 71% Done

11 May 2020 16:11:08,580 INFO : 72% Done

11 May 2020 16:11:08,784 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:08,784 INFO : Inserting SPRC

11 May 2020 16:11:08,788 INFO : 73% Done

11 May 2020 16:11:09,202 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:09,202 INFO : Inserting TGFB1

11 May 2020 16:11:09,208 INFO : 74% Done

11 May 2020 16:11:09,660 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:09,660 INFO : Inserting TMPS2

11 May 2020 16:11:09,665 INFO : 75% Done

11 May 2020 16:11:09,875 INFO : 76% Done

11 May 2020 16:11:10,083 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:10,084 INFO : Inserting TPM2

11 May 2020 16:11:10,088 INFO : 77% Done

11 May 2020 16:11:10,302 INFO : 78% Done

11 May 2020 16:11:10,510 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:10,510 INFO : Inserting TWST1

11 May 2020 16:11:10,514 INFO : 79% Done

11 May 2020 16:11:10,724 INFO : 80% Done

11 May 2020 16:11:10,932 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:10,932 INFO : Inserting VEGFA

11 May 2020 16:11:10,936 INFO : 81% Done

11 May 2020 16:11:11,148 INFO : 82% Done

11 May 2020 16:11:11,370 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:11,370 INFO : Inserting PSA

11 May 2020 16:11:11,375 INFO : 83% Done

11 May 2020 16:11:11,813 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:11,813 INFO : Inserting ERG_pan

11 May 2020 16:11:11,818 INFO : 84% Done

11 May 2020 16:11:12,035 INFO : 85% Done

11 May 2020 16:11:12,250 INFO : 86% Done

11 May 2020 16:11:12,489 INFO : 87% Done

11 May 2020 16:11:12,704 INFO : 88% Done

11 May 2020 16:11:12,919 INFO : 89% Done

11 May 2020 16:11:13,137 INFO : 90% Done

11 May 2020 16:11:13,360 DEBUG: Total peptides inserted: 7

11 May 2020 16:11:13,360 INFO : Inserting ETV1

11 May 2020 16:11:13,365 INFO : 91% Done

11 May 2020 16:11:13,579 INFO : 92% Done

11 May 2020 16:11:13,795 INFO : 93% Done

11 May 2020 16:11:14,007 DEBUG: Total peptides inserted: 3

11 May 2020 16:11:14,007 INFO : Inserting ERG8

11 May 2020 16:11:14,012 INFO : 94% Done

11 May 2020 16:11:14,225 INFO : 95% Done

11 May 2020 16:11:14,434 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:14,434 INFO : Inserting SMAD4

11 May 2020 16:11:14,653 INFO : 96% Done

11 May 2020 16:11:14,821 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:14,821 INFO : Inserting STAT3

11 May 2020 16:11:14,825 INFO : 97% Done

11 May 2020 16:11:15,039 INFO : 98% Done

11 May 2020 16:11:15,251 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:15,252 INFO : Done parsing Skyline document.

11 May 2020 16:11:15,254 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:11:15,407 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:11:16,490 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:11:16,691 INFO : Cleaning up temp tables

11 May 2020 16:11:17,089 INFO : Completed import of Skyline document from CPDR-FFPE-ID-363_2020-01-28_10-49-36.sky.zip

11 May 2020 16:11:17,091 INFO : 100% Done

11 May 2020 16:11:17,103 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80163/CPDR-FFPE-ID-363_2020-01-28_10-49-36.sky.zip into the system

11 May 2020 16:11:17,103 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80159/CPDR-FFPE-ID-325_2020-01-28_10-47-00/CPDR-FFPE-ID-325.skyd into the system

11 May 2020 16:11:17,104 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80159/CPDR-FFPE-ID-325_2020-01-28_10-47-00/CPDR-FFPE-ID-325.skyd into the system

11 May 2020 16:11:17,104 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80159/CPDR-FFPE-ID-325_2020-01-28_10-47-00.sky.zip into the system

11 May 2020 16:11:17,299 INFO : Starting import from CPDR-FFPE-ID-325_2020-01-28_10-47-00.sky.zip

11 May 2020 16:11:17,306 INFO : Starting to import Skyline document from CPDR-FFPE-ID-325_2020-01-28_10-47-00.sky.zip

11 May 2020 16:11:17,325 INFO : Expanding CPDR-FFPE-ID-325.skyd

11 May 2020 16:11:17,834 INFO : Expanding CPDR-FFPE-ID-325.sky.view

11 May 2020 16:11:17,835 INFO : Expanding CPDR-FFPE-ID-325.sky

11 May 2020 16:11:18,386 INFO : Inserting TFF3

11 May 2020 16:11:18,392 INFO : 1% Done

11 May 2020 16:11:18,674 INFO : 2% Done

11 May 2020 16:11:18,885 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:18,885 INFO : Inserting AKT1

11 May 2020 16:11:18,889 INFO : 3% Done

11 May 2020 16:11:19,065 INFO : 4% Done

11 May 2020 16:11:19,290 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:19,290 INFO : Inserting AMACR

11 May 2020 16:11:19,295 INFO : 5% Done

11 May 2020 16:11:19,514 INFO : 6% Done

11 May 2020 16:11:19,723 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:19,723 INFO : Inserting ANDR

11 May 2020 16:11:19,728 INFO : 7% Done

11 May 2020 16:11:20,145 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:20,145 INFO : Inserting ANXA2

11 May 2020 16:11:20,150 INFO : 8% Done

11 May 2020 16:11:20,363 INFO : 9% Done

11 May 2020 16:11:20,573 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:20,573 INFO : Inserting AURKA

11 May 2020 16:11:20,577 INFO : 10% Done

11 May 2020 16:11:20,787 INFO : 11% Done

11 May 2020 16:11:20,997 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:20,998 INFO : Inserting BRAF

11 May 2020 16:11:21,002 INFO : 12% Done

11 May 2020 16:11:21,223 INFO : 13% Done

11 May 2020 16:11:21,460 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:21,460 INFO : Inserting CAMKK2

11 May 2020 16:11:21,482 INFO : 14% Done

11 May 2020 16:11:21,705 INFO : 15% Done

11 May 2020 16:11:21,920 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:21,920 INFO : Inserting CCND1

11 May 2020 16:11:21,924 INFO : 16% Done

11 May 2020 16:11:22,145 INFO : 17% Done

11 May 2020 16:11:22,312 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:22,312 INFO : Inserting CDN1A

11 May 2020 16:11:22,532 INFO : 18% Done

11 May 2020 16:11:22,746 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:22,746 INFO : Inserting CRISP3

11 May 2020 16:11:22,751 INFO : 19% Done

11 May 2020 16:11:23,009 INFO : 20% Done

11 May 2020 16:11:23,242 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:23,242 INFO : Inserting DCOR

11 May 2020 16:11:23,246 INFO : 21% Done

11 May 2020 16:11:23,470 INFO : 22% Done

11 May 2020 16:11:23,704 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:23,704 INFO : Inserting EGFR

11 May 2020 16:11:23,709 INFO : 23% Done

11 May 2020 16:11:23,941 INFO : 24% Done

11 May 2020 16:11:24,120 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:24,120 INFO : Inserting EZH2

11 May 2020 16:11:24,125 INFO : 25% Done

11 May 2020 16:11:24,555 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:24,556 INFO : Inserting FGFR1

11 May 2020 16:11:24,787 INFO : 26% Done

11 May 2020 16:11:25,023 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:25,023 INFO : Inserting FOLH1

11 May 2020 16:11:25,028 INFO : 27% Done

11 May 2020 16:11:25,285 INFO : 28% Done

11 May 2020 16:11:25,509 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:25,509 INFO : Inserting HIF1A

11 May 2020 16:11:25,514 INFO : 29% Done

11 May 2020 16:11:25,729 INFO : 30% Done

11 May 2020 16:11:25,944 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:25,944 INFO : Inserting HPN

11 May 2020 16:11:25,951 INFO : 31% Done

11 May 2020 16:11:26,174 INFO : 32% Done

11 May 2020 16:11:26,404 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:26,404 INFO : Inserting HSPB1

11 May 2020 16:11:26,409 INFO : 33% Done

11 May 2020 16:11:26,652 INFO : 34% Done

11 May 2020 16:11:26,891 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:26,892 INFO : Inserting HXC6

11 May 2020 16:11:26,896 INFO : 35% Done

11 May 2020 16:11:27,137 INFO : 36% Done

11 May 2020 16:11:27,376 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:27,377 INFO : Inserting KLK11

11 May 2020 16:11:27,381 INFO : 37% Done

11 May 2020 16:11:27,831 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:27,831 INFO : Inserting KLK2

11 May 2020 16:11:27,835 INFO : 38% Done

11 May 2020 16:11:28,071 INFO : 39% Done

11 May 2020 16:11:28,284 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:28,285 INFO : Inserting MMP2

11 May 2020 16:11:28,289 INFO : 40% Done

11 May 2020 16:11:28,501 INFO : 41% Done

11 May 2020 16:11:28,670 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:28,670 INFO : Inserting MMP9

11 May 2020 16:11:28,674 INFO : 42% Done

11 May 2020 16:11:28,885 INFO : 43% Done

11 May 2020 16:11:29,091 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:29,091 INFO : Inserting MUC1

11 May 2020 16:11:29,096 INFO : 44% Done

11 May 2020 16:11:29,349 INFO : 45% Done

11 May 2020 16:11:29,557 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:29,558 INFO : Inserting MUC6

11 May 2020 16:11:29,771 INFO : 46% Done

11 May 2020 16:11:29,977 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:29,978 INFO : Inserting MYC

11 May 2020 16:11:29,982 INFO : 47% Done

11 May 2020 16:11:30,194 INFO : 48% Done

11 May 2020 16:11:30,400 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:30,400 INFO : Inserting MYCN

11 May 2020 16:11:30,405 INFO : 49% Done

11 May 2020 16:11:30,621 INFO : 50% Done

11 May 2020 16:11:30,827 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:30,827 INFO : Inserting MYO6

11 May 2020 16:11:30,831 INFO : 51% Done

11 May 2020 16:11:31,039 INFO : 52% Done

11 May 2020 16:11:31,247 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:31,247 INFO : Inserting NCOA2

11 May 2020 16:11:31,252 INFO : 53% Done

11 May 2020 16:11:31,462 INFO : 54% Done

11 May 2020 16:11:31,669 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:31,669 INFO : Inserting NPY

11 May 2020 16:11:31,674 INFO : 55% Done

11 May 2020 16:11:31,882 INFO : 56% Done

11 May 2020 16:11:32,092 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:32,092 INFO : Inserting O51E2

11 May 2020 16:11:32,267 INFO : 57% Done

11 May 2020 16:11:32,476 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:32,476 INFO : Inserting OSTP

11 May 2020 16:11:32,481 INFO : 58% Done

11 May 2020 16:11:32,696 INFO : 59% Done

11 May 2020 16:11:32,902 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:32,902 INFO : Inserting P53

11 May 2020 16:11:32,907 INFO : 60% Done

11 May 2020 16:11:33,116 INFO : 61% Done

11 May 2020 16:11:33,327 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:33,327 INFO : Inserting PAFA

11 May 2020 16:11:33,332 INFO : 62% Done

11 May 2020 16:11:33,556 INFO : 63% Done

11 May 2020 16:11:33,770 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:33,770 INFO : Inserting PGFRB

11 May 2020 16:11:33,942 INFO : 64% Done

11 May 2020 16:11:34,152 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:34,152 INFO : Inserting PK3CA

11 May 2020 16:11:34,156 INFO : 65% Done

11 May 2020 16:11:34,368 INFO : 66% Done

11 May 2020 16:11:34,599 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:34,599 INFO : Inserting RAF1

11 May 2020 16:11:34,603 INFO : 67% Done

11 May 2020 16:11:34,812 INFO : 68% Done

11 May 2020 16:11:34,995 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:34,995 INFO : Inserting SERPINI1

11 May 2020 16:11:34,999 INFO : 69% Done

11 May 2020 16:11:35,211 INFO : 70% Done

11 May 2020 16:11:35,418 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:35,418 INFO : Inserting SPINK1

11 May 2020 16:11:35,422 INFO : 71% Done

11 May 2020 16:11:35,638 INFO : 72% Done

11 May 2020 16:11:35,847 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:35,847 INFO : Inserting SPRC

11 May 2020 16:11:36,069 INFO : 73% Done

11 May 2020 16:11:36,278 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:36,278 INFO : Inserting TGFB1

11 May 2020 16:11:36,282 INFO : 74% Done

11 May 2020 16:11:36,709 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:36,709 INFO : Inserting TMPS2

11 May 2020 16:11:36,714 INFO : 75% Done

11 May 2020 16:11:36,929 INFO : 76% Done

11 May 2020 16:11:37,138 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:37,138 INFO : Inserting TPM2

11 May 2020 16:11:37,143 INFO : 77% Done

11 May 2020 16:11:37,364 INFO : 78% Done

11 May 2020 16:11:37,576 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:37,576 INFO : Inserting TWST1

11 May 2020 16:11:37,581 INFO : 79% Done

11 May 2020 16:11:37,802 INFO : 80% Done

11 May 2020 16:11:38,021 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:38,021 INFO : Inserting VEGFA

11 May 2020 16:11:38,025 INFO : 81% Done

11 May 2020 16:11:38,242 INFO : 82% Done

11 May 2020 16:11:38,453 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:38,453 INFO : Inserting PSA

11 May 2020 16:11:38,457 INFO : 83% Done

11 May 2020 16:11:38,882 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:38,882 INFO : Inserting ERG_pan

11 May 2020 16:11:38,887 INFO : 84% Done

11 May 2020 16:11:39,103 INFO : 85% Done

11 May 2020 16:11:39,331 INFO : 86% Done

11 May 2020 16:11:39,545 INFO : 87% Done

11 May 2020 16:11:39,765 INFO : 88% Done

11 May 2020 16:11:39,993 INFO : 89% Done

11 May 2020 16:11:40,205 INFO : 90% Done

11 May 2020 16:11:40,414 DEBUG: Total peptides inserted: 7

11 May 2020 16:11:40,415 INFO : Inserting ETV1

11 May 2020 16:11:40,419 INFO : 91% Done

11 May 2020 16:11:40,653 INFO : 92% Done

11 May 2020 16:11:40,897 INFO : 93% Done

11 May 2020 16:11:41,137 DEBUG: Total peptides inserted: 3

11 May 2020 16:11:41,137 INFO : Inserting ERG8

11 May 2020 16:11:41,142 INFO : 94% Done

11 May 2020 16:11:41,385 INFO : 95% Done

11 May 2020 16:11:41,617 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:41,617 INFO : Inserting SMAD4

11 May 2020 16:11:41,847 INFO : 96% Done

11 May 2020 16:11:42,035 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:42,035 INFO : Inserting STAT3

11 May 2020 16:11:42,039 INFO : 97% Done

11 May 2020 16:11:42,262 INFO : 98% Done

11 May 2020 16:11:42,482 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:42,483 INFO : Done parsing Skyline document.

11 May 2020 16:11:42,485 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:11:42,641 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:11:43,296 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:11:43,492 INFO : Cleaning up temp tables

11 May 2020 16:11:43,504 INFO : Completed import of Skyline document from CPDR-FFPE-ID-325_2020-01-28_10-47-00.sky.zip

11 May 2020 16:11:43,505 INFO : 100% Done

11 May 2020 16:11:43,510 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80159/CPDR-FFPE-ID-325_2020-01-28_10-47-00.sky.zip into the system

11 May 2020 16:11:43,510 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80151/CPDR-FFPE-ID-253_2020-01-28_10-41-49/CPDR-FFPE-ID-253.skyd into the system

11 May 2020 16:11:43,511 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80151/CPDR-FFPE-ID-253_2020-01-28_10-41-49/CPDR-FFPE-ID-253.skyd into the system

11 May 2020 16:11:43,511 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80151/CPDR-FFPE-ID-253_2020-01-28_10-41-49.sky.zip into the system

11 May 2020 16:11:43,513 INFO : Starting import from CPDR-FFPE-ID-253_2020-01-28_10-41-49.sky.zip

11 May 2020 16:11:43,519 INFO : Starting to import Skyline document from CPDR-FFPE-ID-253_2020-01-28_10-41-49.sky.zip

11 May 2020 16:11:43,537 INFO : Expanding CPDR-FFPE-ID-253.skyd

11 May 2020 16:11:44,010 INFO : Expanding CPDR-FFPE-ID-253.sky.view

11 May 2020 16:11:44,011 INFO : Expanding CPDR-FFPE-ID-253.sky

11 May 2020 16:11:44,408 INFO : Inserting TFF3

11 May 2020 16:11:44,414 INFO : 1% Done

11 May 2020 16:11:44,631 INFO : 2% Done

11 May 2020 16:11:44,850 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:44,850 INFO : Inserting AKT1

11 May 2020 16:11:44,854 INFO : 3% Done

11 May 2020 16:11:45,028 INFO : 4% Done

11 May 2020 16:11:45,240 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:45,240 INFO : Inserting AMACR

11 May 2020 16:11:45,244 INFO : 5% Done

11 May 2020 16:11:45,460 INFO : 6% Done

11 May 2020 16:11:45,706 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:45,706 INFO : Inserting ANDR

11 May 2020 16:11:45,714 INFO : 7% Done

11 May 2020 16:11:46,227 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:46,227 INFO : Inserting ANXA2

11 May 2020 16:11:46,232 INFO : 8% Done

11 May 2020 16:11:46,479 INFO : 9% Done

11 May 2020 16:11:46,731 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:46,732 INFO : Inserting AURKA

11 May 2020 16:11:46,736 INFO : 10% Done

11 May 2020 16:11:47,006 INFO : 11% Done

11 May 2020 16:11:47,269 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:47,270 INFO : Inserting BRAF

11 May 2020 16:11:47,274 INFO : 12% Done

11 May 2020 16:11:47,521 INFO : 13% Done

11 May 2020 16:11:47,752 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:47,752 INFO : Inserting CAMKK2

11 May 2020 16:11:47,757 INFO : 14% Done

11 May 2020 16:11:48,019 INFO : 15% Done

11 May 2020 16:11:48,241 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:48,241 INFO : Inserting CCND1

11 May 2020 16:11:48,246 INFO : 16% Done

11 May 2020 16:11:48,471 INFO : 17% Done

11 May 2020 16:11:48,668 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:48,668 INFO : Inserting CDN1A

11 May 2020 16:11:48,913 INFO : 18% Done

11 May 2020 16:11:49,136 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:49,136 INFO : Inserting CRISP3

11 May 2020 16:11:49,141 INFO : 19% Done

11 May 2020 16:11:49,361 INFO : 20% Done

11 May 2020 16:11:49,587 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:49,587 INFO : Inserting DCOR

11 May 2020 16:11:49,591 INFO : 21% Done

11 May 2020 16:11:49,824 INFO : 22% Done

11 May 2020 16:11:50,067 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:50,067 INFO : Inserting EGFR

11 May 2020 16:11:50,071 INFO : 23% Done

11 May 2020 16:11:50,296 INFO : 24% Done

11 May 2020 16:11:50,483 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:50,484 INFO : Inserting EZH2

11 May 2020 16:11:50,488 INFO : 25% Done

11 May 2020 16:11:50,948 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:50,948 INFO : Inserting FGFR1

11 May 2020 16:11:51,186 INFO : 26% Done

11 May 2020 16:11:51,420 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:51,420 INFO : Inserting FOLH1

11 May 2020 16:11:51,425 INFO : 27% Done

11 May 2020 16:11:51,652 INFO : 28% Done

11 May 2020 16:11:51,876 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:51,876 INFO : Inserting HIF1A

11 May 2020 16:11:51,880 INFO : 29% Done

11 May 2020 16:11:52,106 INFO : 30% Done

11 May 2020 16:11:52,353 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:52,353 INFO : Inserting HPN

11 May 2020 16:11:52,357 INFO : 31% Done

11 May 2020 16:11:52,619 INFO : 32% Done

11 May 2020 16:11:52,842 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:52,843 INFO : Inserting HSPB1

11 May 2020 16:11:52,847 INFO : 33% Done

11 May 2020 16:11:53,066 INFO : 34% Done

11 May 2020 16:11:53,280 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:53,280 INFO : Inserting HXC6

11 May 2020 16:11:53,284 INFO : 35% Done

11 May 2020 16:11:53,532 INFO : 36% Done

11 May 2020 16:11:53,743 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:53,743 INFO : Inserting KLK11

11 May 2020 16:11:53,970 INFO : 37% Done

11 May 2020 16:11:54,203 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:54,203 INFO : Inserting KLK2

11 May 2020 16:11:54,208 INFO : 38% Done

11 May 2020 16:11:54,422 INFO : 39% Done

11 May 2020 16:11:54,646 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:54,646 INFO : Inserting MMP2

11 May 2020 16:11:54,650 INFO : 40% Done

11 May 2020 16:11:54,887 INFO : 41% Done

11 May 2020 16:11:55,078 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:55,078 INFO : Inserting MMP9

11 May 2020 16:11:55,082 INFO : 42% Done

11 May 2020 16:11:55,324 INFO : 43% Done

11 May 2020 16:11:55,564 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:55,564 INFO : Inserting MUC1

11 May 2020 16:11:55,568 INFO : 44% Done

11 May 2020 16:11:55,811 INFO : 45% Done

11 May 2020 16:11:56,048 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:56,048 INFO : Inserting MUC6

11 May 2020 16:11:56,052 INFO : 46% Done

11 May 2020 16:11:56,532 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:56,532 INFO : Inserting MYC

11 May 2020 16:11:56,537 INFO : 47% Done

11 May 2020 16:11:56,778 INFO : 48% Done

11 May 2020 16:11:57,025 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:57,025 INFO : Inserting MYCN

11 May 2020 16:11:57,029 INFO : 49% Done

11 May 2020 16:11:57,252 INFO : 50% Done

11 May 2020 16:11:57,459 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:57,459 INFO : Inserting MYO6

11 May 2020 16:11:57,463 INFO : 51% Done

11 May 2020 16:11:57,673 INFO : 52% Done

11 May 2020 16:11:57,900 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:57,900 INFO : Inserting NCOA2

11 May 2020 16:11:57,904 INFO : 53% Done

11 May 2020 16:11:58,115 INFO : 54% Done

11 May 2020 16:11:58,320 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:58,320 INFO : Inserting NPY

11 May 2020 16:11:58,324 INFO : 55% Done

11 May 2020 16:11:58,531 INFO : 56% Done

11 May 2020 16:11:58,737 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:58,737 INFO : Inserting O51E2

11 May 2020 16:11:58,910 INFO : 57% Done

11 May 2020 16:11:59,121 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:59,121 INFO : Inserting OSTP

11 May 2020 16:11:59,126 INFO : 58% Done

11 May 2020 16:11:59,339 INFO : 59% Done

11 May 2020 16:11:59,547 DEBUG: Total peptides inserted: 2

11 May 2020 16:11:59,547 INFO : Inserting P53

11 May 2020 16:11:59,551 INFO : 60% Done

11 May 2020 16:11:59,773 INFO : 61% Done

11 May 2020 16:12:00,010 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:00,010 INFO : Inserting PAFA

11 May 2020 16:12:00,014 INFO : 62% Done

11 May 2020 16:12:00,259 INFO : 63% Done

11 May 2020 16:12:00,498 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:00,498 INFO : Inserting PGFRB

11 May 2020 16:12:00,693 INFO : 64% Done

11 May 2020 16:12:00,930 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:00,930 INFO : Inserting PK3CA

11 May 2020 16:12:00,934 INFO : 65% Done

11 May 2020 16:12:01,187 INFO : 66% Done

11 May 2020 16:12:01,425 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:01,425 INFO : Inserting RAF1

11 May 2020 16:12:01,429 INFO : 67% Done

11 May 2020 16:12:01,722 INFO : 68% Done

11 May 2020 16:12:01,905 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:01,905 INFO : Inserting SERPINI1

11 May 2020 16:12:01,910 INFO : 69% Done

11 May 2020 16:12:02,123 INFO : 70% Done

11 May 2020 16:12:02,335 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:02,335 INFO : Inserting SPINK1

11 May 2020 16:12:02,339 INFO : 71% Done

11 May 2020 16:12:02,552 INFO : 72% Done

11 May 2020 16:12:02,758 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:02,758 INFO : Inserting SPRC

11 May 2020 16:12:02,977 INFO : 73% Done

11 May 2020 16:12:03,190 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:03,190 INFO : Inserting TGFB1

11 May 2020 16:12:03,194 INFO : 74% Done

11 May 2020 16:12:03,691 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:03,692 INFO : Inserting TMPS2

11 May 2020 16:12:03,696 INFO : 75% Done

11 May 2020 16:12:03,942 INFO : 76% Done

11 May 2020 16:12:04,184 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:04,184 INFO : Inserting TPM2

11 May 2020 16:12:04,189 INFO : 77% Done

11 May 2020 16:12:04,433 INFO : 78% Done

11 May 2020 16:12:04,677 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:04,677 INFO : Inserting TWST1

11 May 2020 16:12:04,682 INFO : 79% Done

11 May 2020 16:12:04,939 INFO : 80% Done

11 May 2020 16:12:05,180 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:05,180 INFO : Inserting VEGFA

11 May 2020 16:12:05,184 INFO : 81% Done

11 May 2020 16:12:05,430 INFO : 82% Done

11 May 2020 16:12:05,670 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:05,671 INFO : Inserting PSA

11 May 2020 16:12:05,675 INFO : 83% Done

11 May 2020 16:12:06,115 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:06,115 INFO : Inserting ERG_pan

11 May 2020 16:12:06,119 INFO : 84% Done

11 May 2020 16:12:06,338 INFO : 85% Done

11 May 2020 16:12:06,554 INFO : 86% Done

11 May 2020 16:12:06,771 INFO : 87% Done

11 May 2020 16:12:07,001 INFO : 88% Done

11 May 2020 16:12:07,243 INFO : 89% Done

11 May 2020 16:12:07,489 INFO : 90% Done

11 May 2020 16:12:07,729 DEBUG: Total peptides inserted: 7

11 May 2020 16:12:07,729 INFO : Inserting ETV1

11 May 2020 16:12:07,733 INFO : 91% Done

11 May 2020 16:12:07,977 INFO : 92% Done

11 May 2020 16:12:08,218 INFO : 93% Done

11 May 2020 16:12:08,456 DEBUG: Total peptides inserted: 3

11 May 2020 16:12:08,456 INFO : Inserting ERG8

11 May 2020 16:12:08,460 INFO : 94% Done

11 May 2020 16:12:08,704 INFO : 95% Done

11 May 2020 16:12:08,943 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:08,943 INFO : Inserting SMAD4

11 May 2020 16:12:09,189 INFO : 96% Done

11 May 2020 16:12:09,382 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:09,382 INFO : Inserting STAT3

11 May 2020 16:12:09,386 INFO : 97% Done

11 May 2020 16:12:09,627 INFO : 98% Done

11 May 2020 16:12:09,866 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:09,867 INFO : Done parsing Skyline document.

11 May 2020 16:12:09,869 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:12:10,021 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:12:10,741 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:12:10,930 INFO : Cleaning up temp tables

11 May 2020 16:12:11,303 INFO : Completed import of Skyline document from CPDR-FFPE-ID-253_2020-01-28_10-41-49.sky.zip

11 May 2020 16:12:11,304 INFO : 100% Done

11 May 2020 16:12:11,310 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80151/CPDR-FFPE-ID-253_2020-01-28_10-41-49.sky.zip into the system

11 May 2020 16:12:11,310 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80143/CPDR-FFPE-ID-277_2020-01-28_10-36-52/CPDR-FFPE-ID-277.skyd into the system

11 May 2020 16:12:11,311 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80143/CPDR-FFPE-ID-277_2020-01-28_10-36-52/CPDR-FFPE-ID-277.skyd into the system

11 May 2020 16:12:11,311 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80143/CPDR-FFPE-ID-277_2020-01-28_10-36-52.sky.zip into the system

11 May 2020 16:12:11,312 INFO : Starting import from CPDR-FFPE-ID-277_2020-01-28_10-36-52.sky.zip

11 May 2020 16:12:11,315 INFO : Starting to import Skyline document from CPDR-FFPE-ID-277_2020-01-28_10-36-52.sky.zip

11 May 2020 16:12:11,324 INFO : Expanding CPDR-FFPE-ID-277.skyd

11 May 2020 16:12:11,545 INFO : Expanding CPDR-FFPE-ID-277.sky.view

11 May 2020 16:12:11,546 INFO : Expanding CPDR-FFPE-ID-277.sky

11 May 2020 16:12:12,153 INFO : Inserting TFF3

11 May 2020 16:12:12,157 INFO : 1% Done

11 May 2020 16:12:12,259 INFO : 2% Done

11 May 2020 16:12:12,405 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:12,405 INFO : Inserting AKT1

11 May 2020 16:12:12,407 INFO : 3% Done

11 May 2020 16:12:12,495 INFO : 4% Done

11 May 2020 16:12:12,825 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:12,825 INFO : Inserting AMACR

11 May 2020 16:12:12,833 INFO : 5% Done

11 May 2020 16:12:13,090 INFO : 6% Done

11 May 2020 16:12:13,341 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:13,341 INFO : Inserting ANDR

11 May 2020 16:12:13,345 INFO : 7% Done

11 May 2020 16:12:13,591 INFO : 8% Done

11 May 2020 16:12:13,836 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:13,836 INFO : Inserting ANXA2

11 May 2020 16:12:14,088 INFO : 9% Done

11 May 2020 16:12:14,347 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:14,347 INFO : Inserting AURKA

11 May 2020 16:12:14,352 INFO : 10% Done

11 May 2020 16:12:14,608 INFO : 11% Done

11 May 2020 16:12:14,862 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:14,863 INFO : Inserting BRAF

11 May 2020 16:12:14,867 INFO : 12% Done

11 May 2020 16:12:15,128 INFO : 13% Done

11 May 2020 16:12:15,385 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:15,385 INFO : Inserting CAMKK2

11 May 2020 16:12:15,390 INFO : 14% Done

11 May 2020 16:12:15,651 INFO : 15% Done

11 May 2020 16:12:15,900 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:15,900 INFO : Inserting CCND1

11 May 2020 16:12:15,905 INFO : 16% Done

11 May 2020 16:12:16,150 INFO : 17% Done

11 May 2020 16:12:16,372 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:16,372 INFO : Inserting CDN1A

11 May 2020 16:12:16,637 INFO : 18% Done

11 May 2020 16:12:16,886 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:16,886 INFO : Inserting CRISP3

11 May 2020 16:12:16,891 INFO : 19% Done

11 May 2020 16:12:17,129 INFO : 20% Done

11 May 2020 16:12:17,360 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:17,360 INFO : Inserting DCOR

11 May 2020 16:12:17,365 INFO : 21% Done

11 May 2020 16:12:17,593 INFO : 22% Done

11 May 2020 16:12:17,855 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:17,855 INFO : Inserting EGFR

11 May 2020 16:12:17,860 INFO : 23% Done

11 May 2020 16:12:18,119 INFO : 24% Done

11 May 2020 16:12:18,310 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:18,310 INFO : Inserting EZH2

11 May 2020 16:12:18,315 INFO : 25% Done

11 May 2020 16:12:18,824 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:18,824 INFO : Inserting FGFR1

11 May 2020 16:12:19,088 INFO : 26% Done

11 May 2020 16:12:19,319 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:19,319 INFO : Inserting FOLH1

11 May 2020 16:12:19,324 INFO : 27% Done

11 May 2020 16:12:19,556 INFO : 28% Done

11 May 2020 16:12:19,777 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:19,777 INFO : Inserting HIF1A

11 May 2020 16:12:19,782 INFO : 29% Done

11 May 2020 16:12:20,007 INFO : 30% Done

11 May 2020 16:12:20,270 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:20,270 INFO : Inserting HPN

11 May 2020 16:12:20,275 INFO : 31% Done

11 May 2020 16:12:20,535 INFO : 32% Done

11 May 2020 16:12:20,796 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:20,797 INFO : Inserting HSPB1

11 May 2020 16:12:20,801 INFO : 33% Done

11 May 2020 16:12:21,047 INFO : 34% Done

11 May 2020 16:12:21,268 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:21,268 INFO : Inserting HXC6

11 May 2020 16:12:21,272 INFO : 35% Done

11 May 2020 16:12:21,519 INFO : 36% Done

11 May 2020 16:12:21,780 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:21,780 INFO : Inserting KLK11

11 May 2020 16:12:22,039 INFO : 37% Done

11 May 2020 16:12:22,291 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:22,292 INFO : Inserting KLK2

11 May 2020 16:12:22,296 INFO : 38% Done

11 May 2020 16:12:22,548 INFO : 39% Done

11 May 2020 16:12:22,808 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:22,808 INFO : Inserting MMP2

11 May 2020 16:12:22,813 INFO : 40% Done

11 May 2020 16:12:23,061 INFO : 41% Done

11 May 2020 16:12:23,261 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:23,261 INFO : Inserting MMP9

11 May 2020 16:12:23,266 INFO : 42% Done

11 May 2020 16:12:23,495 INFO : 43% Done

11 May 2020 16:12:23,718 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:23,718 INFO : Inserting MUC1

11 May 2020 16:12:23,723 INFO : 44% Done

11 May 2020 16:12:23,951 INFO : 45% Done

11 May 2020 16:12:24,187 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:24,188 INFO : Inserting MUC6

11 May 2020 16:12:24,426 INFO : 46% Done

11 May 2020 16:12:24,663 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:24,663 INFO : Inserting MYC

11 May 2020 16:12:24,668 INFO : 47% Done

11 May 2020 16:12:24,899 INFO : 48% Done

11 May 2020 16:12:25,128 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:25,128 INFO : Inserting MYCN

11 May 2020 16:12:25,133 INFO : 49% Done

11 May 2020 16:12:25,367 INFO : 50% Done

11 May 2020 16:12:25,599 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:25,599 INFO : Inserting MYO6

11 May 2020 16:12:25,604 INFO : 51% Done

11 May 2020 16:12:25,840 INFO : 52% Done

11 May 2020 16:12:26,071 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:26,072 INFO : Inserting NCOA2

11 May 2020 16:12:26,076 INFO : 53% Done

11 May 2020 16:12:26,302 INFO : 54% Done

11 May 2020 16:12:26,525 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:26,525 INFO : Inserting NPY

11 May 2020 16:12:26,529 INFO : 55% Done

11 May 2020 16:12:26,757 INFO : 56% Done

11 May 2020 16:12:26,998 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:26,998 INFO : Inserting O51E2

11 May 2020 16:12:27,190 INFO : 57% Done

11 May 2020 16:12:27,417 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:27,417 INFO : Inserting OSTP

11 May 2020 16:12:27,422 INFO : 58% Done

11 May 2020 16:12:27,645 INFO : 59% Done

11 May 2020 16:12:27,864 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:27,864 INFO : Inserting P53

11 May 2020 16:12:27,869 INFO : 60% Done

11 May 2020 16:12:28,102 INFO : 61% Done

11 May 2020 16:12:28,373 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:28,374 INFO : Inserting PAFA

11 May 2020 16:12:28,378 INFO : 62% Done

11 May 2020 16:12:28,644 INFO : 63% Done

11 May 2020 16:12:28,889 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:28,889 INFO : Inserting PGFRB

11 May 2020 16:12:29,104 INFO : 64% Done

11 May 2020 16:12:29,376 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:29,376 INFO : Inserting PK3CA

11 May 2020 16:12:29,381 INFO : 65% Done

11 May 2020 16:12:29,650 INFO : 66% Done

11 May 2020 16:12:29,870 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:29,870 INFO : Inserting RAF1

11 May 2020 16:12:29,874 INFO : 67% Done

11 May 2020 16:12:30,090 INFO : 68% Done

11 May 2020 16:12:30,285 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:30,285 INFO : Inserting SERPINI1

11 May 2020 16:12:30,289 INFO : 69% Done

11 May 2020 16:12:30,524 INFO : 70% Done

11 May 2020 16:12:30,756 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:30,756 INFO : Inserting SPINK1

11 May 2020 16:12:30,761 INFO : 71% Done

11 May 2020 16:12:30,992 INFO : 72% Done

11 May 2020 16:12:31,217 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:31,217 INFO : Inserting SPRC

11 May 2020 16:12:31,455 INFO : 73% Done

11 May 2020 16:12:31,706 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:31,706 INFO : Inserting TGFB1

11 May 2020 16:12:31,711 INFO : 74% Done

11 May 2020 16:12:32,183 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:32,183 INFO : Inserting TMPS2

11 May 2020 16:12:32,187 INFO : 75% Done

11 May 2020 16:12:32,419 INFO : 76% Done

11 May 2020 16:12:32,673 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:32,673 INFO : Inserting TPM2

11 May 2020 16:12:32,678 INFO : 77% Done

11 May 2020 16:12:32,913 INFO : 78% Done

11 May 2020 16:12:33,144 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:33,144 INFO : Inserting TWST1

11 May 2020 16:12:33,149 INFO : 79% Done

11 May 2020 16:12:33,378 INFO : 80% Done

11 May 2020 16:12:33,600 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:33,601 INFO : Inserting VEGFA

11 May 2020 16:12:33,605 INFO : 81% Done

11 May 2020 16:12:33,831 INFO : 82% Done

11 May 2020 16:12:34,056 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:34,056 INFO : Inserting PSA

11 May 2020 16:12:34,061 INFO : 83% Done

11 May 2020 16:12:34,523 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:34,524 INFO : Inserting ERG_pan

11 May 2020 16:12:34,528 INFO : 84% Done

11 May 2020 16:12:34,780 INFO : 85% Done

11 May 2020 16:12:35,010 INFO : 86% Done

11 May 2020 16:12:35,250 INFO : 87% Done

11 May 2020 16:12:35,504 INFO : 88% Done

11 May 2020 16:12:35,735 INFO : 89% Done

11 May 2020 16:12:35,975 INFO : 90% Done

11 May 2020 16:12:36,254 DEBUG: Total peptides inserted: 7

11 May 2020 16:12:36,254 INFO : Inserting ETV1

11 May 2020 16:12:36,259 INFO : 91% Done

11 May 2020 16:12:36,494 INFO : 92% Done

11 May 2020 16:12:36,730 INFO : 93% Done

11 May 2020 16:12:36,972 DEBUG: Total peptides inserted: 3

11 May 2020 16:12:36,972 INFO : Inserting ERG8

11 May 2020 16:12:36,977 INFO : 94% Done

11 May 2020 16:12:37,232 INFO : 95% Done

11 May 2020 16:12:37,490 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:37,490 INFO : Inserting SMAD4

11 May 2020 16:12:37,767 INFO : 96% Done

11 May 2020 16:12:37,968 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:37,968 INFO : Inserting STAT3

11 May 2020 16:12:37,973 INFO : 97% Done

11 May 2020 16:12:38,210 INFO : 98% Done

11 May 2020 16:12:38,444 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:38,444 INFO : Done parsing Skyline document.

11 May 2020 16:12:38,446 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:12:38,617 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:12:39,880 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:12:40,166 INFO : Cleaning up temp tables

11 May 2020 16:12:40,168 INFO : Completed import of Skyline document from CPDR-FFPE-ID-277_2020-01-28_10-36-52.sky.zip

11 May 2020 16:12:40,176 INFO : 100% Done

11 May 2020 16:12:40,182 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80143/CPDR-FFPE-ID-277_2020-01-28_10-36-52.sky.zip into the system

11 May 2020 16:12:40,182 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80142/CPDR-FFPE-ID-273_2020-01-28_10-36-17/CPDR-FFPE-ID-273.skyd into the system

11 May 2020 16:12:40,182 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80142/CPDR-FFPE-ID-273_2020-01-28_10-36-17/CPDR-FFPE-ID-273.skyd into the system

11 May 2020 16:12:40,182 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80142/CPDR-FFPE-ID-273_2020-01-28_10-36-17.sky.zip into the system

11 May 2020 16:12:40,186 INFO : Starting import from CPDR-FFPE-ID-273_2020-01-28_10-36-17.sky.zip

11 May 2020 16:12:40,191 INFO : Starting to import Skyline document from CPDR-FFPE-ID-273_2020-01-28_10-36-17.sky.zip

11 May 2020 16:12:40,210 INFO : Expanding CPDR-FFPE-ID-273.skyd

11 May 2020 16:12:40,647 INFO : Expanding CPDR-FFPE-ID-273.sky.view

11 May 2020 16:12:40,647 INFO : Expanding CPDR-FFPE-ID-273.sky

11 May 2020 16:12:41,239 INFO : Inserting TFF3

11 May 2020 16:12:41,244 INFO : 1% Done

11 May 2020 16:12:41,394 INFO : 2% Done

11 May 2020 16:12:41,545 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:41,545 INFO : Inserting AKT1

11 May 2020 16:12:41,549 INFO : 3% Done

11 May 2020 16:12:41,720 INFO : 4% Done

11 May 2020 16:12:41,924 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:41,925 INFO : Inserting AMACR

11 May 2020 16:12:41,929 INFO : 5% Done

11 May 2020 16:12:42,186 INFO : 6% Done

11 May 2020 16:12:42,388 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:42,388 INFO : Inserting ANDR

11 May 2020 16:12:42,392 INFO : 7% Done

11 May 2020 16:12:42,798 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:42,799 INFO : Inserting ANXA2

11 May 2020 16:12:42,803 INFO : 8% Done

11 May 2020 16:12:43,005 INFO : 9% Done

11 May 2020 16:12:43,211 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:43,211 INFO : Inserting AURKA

11 May 2020 16:12:43,215 INFO : 10% Done

11 May 2020 16:12:43,417 INFO : 11% Done

11 May 2020 16:12:43,622 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:43,622 INFO : Inserting BRAF

11 May 2020 16:12:43,626 INFO : 12% Done

11 May 2020 16:12:43,855 INFO : 13% Done

11 May 2020 16:12:44,068 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:44,068 INFO : Inserting CAMKK2

11 May 2020 16:12:44,073 INFO : 14% Done

11 May 2020 16:12:44,284 INFO : 15% Done

11 May 2020 16:12:44,495 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:44,495 INFO : Inserting CCND1

11 May 2020 16:12:44,499 INFO : 16% Done

11 May 2020 16:12:44,715 INFO : 17% Done

11 May 2020 16:12:44,874 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:44,875 INFO : Inserting CDN1A

11 May 2020 16:12:45,087 INFO : 18% Done

11 May 2020 16:12:45,298 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:45,298 INFO : Inserting CRISP3

11 May 2020 16:12:45,303 INFO : 19% Done

11 May 2020 16:12:45,516 INFO : 20% Done

11 May 2020 16:12:45,733 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:45,733 INFO : Inserting DCOR

11 May 2020 16:12:45,737 INFO : 21% Done

11 May 2020 16:12:45,949 INFO : 22% Done

11 May 2020 16:12:46,155 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:46,155 INFO : Inserting EGFR

11 May 2020 16:12:46,159 INFO : 23% Done

11 May 2020 16:12:46,363 INFO : 24% Done

11 May 2020 16:12:46,527 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:46,527 INFO : Inserting EZH2

11 May 2020 16:12:46,531 INFO : 25% Done

11 May 2020 16:12:46,940 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:46,941 INFO : Inserting FGFR1

11 May 2020 16:12:47,154 INFO : 26% Done

11 May 2020 16:12:47,364 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:47,364 INFO : Inserting FOLH1

11 May 2020 16:12:47,368 INFO : 27% Done

11 May 2020 16:12:47,689 INFO : 28% Done

11 May 2020 16:12:47,897 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:47,898 INFO : Inserting HIF1A

11 May 2020 16:12:47,902 INFO : 29% Done

11 May 2020 16:12:48,108 INFO : 30% Done

11 May 2020 16:12:48,311 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:48,311 INFO : Inserting HPN

11 May 2020 16:12:48,316 INFO : 31% Done

11 May 2020 16:12:48,524 INFO : 32% Done

11 May 2020 16:12:48,736 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:48,736 INFO : Inserting HSPB1

11 May 2020 16:12:48,740 INFO : 33% Done

11 May 2020 16:12:48,992 INFO : 34% Done

11 May 2020 16:12:49,191 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:49,192 INFO : Inserting HXC6

11 May 2020 16:12:49,196 INFO : 35% Done

11 May 2020 16:12:49,396 INFO : 36% Done

11 May 2020 16:12:49,594 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:49,595 INFO : Inserting KLK11

11 May 2020 16:12:49,599 INFO : 37% Done

11 May 2020 16:12:50,016 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:50,017 INFO : Inserting KLK2

11 May 2020 16:12:50,023 INFO : 38% Done

11 May 2020 16:12:50,232 INFO : 39% Done

11 May 2020 16:12:50,450 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:50,450 INFO : Inserting MMP2

11 May 2020 16:12:50,454 INFO : 40% Done

11 May 2020 16:12:50,663 INFO : 41% Done

11 May 2020 16:12:50,837 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:50,837 INFO : Inserting MMP9

11 May 2020 16:12:50,841 INFO : 42% Done

11 May 2020 16:12:51,103 INFO : 43% Done

11 May 2020 16:12:51,314 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:51,314 INFO : Inserting MUC1

11 May 2020 16:12:51,318 INFO : 44% Done

11 May 2020 16:12:51,525 INFO : 45% Done

11 May 2020 16:12:51,729 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:51,730 INFO : Inserting MUC6

11 May 2020 16:12:51,939 INFO : 46% Done

11 May 2020 16:12:52,143 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:52,143 INFO : Inserting MYC

11 May 2020 16:12:52,150 INFO : 47% Done

11 May 2020 16:12:52,357 INFO : 48% Done

11 May 2020 16:12:52,564 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:52,564 INFO : Inserting MYCN

11 May 2020 16:12:52,568 INFO : 49% Done

11 May 2020 16:12:52,782 INFO : 50% Done

11 May 2020 16:12:52,987 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:52,987 INFO : Inserting MYO6

11 May 2020 16:12:52,991 INFO : 51% Done

11 May 2020 16:12:53,199 INFO : 52% Done

11 May 2020 16:12:53,406 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:53,406 INFO : Inserting NCOA2

11 May 2020 16:12:53,410 INFO : 53% Done

11 May 2020 16:12:53,614 INFO : 54% Done

11 May 2020 16:12:53,824 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:53,825 INFO : Inserting NPY

11 May 2020 16:12:53,829 INFO : 55% Done

11 May 2020 16:12:54,046 INFO : 56% Done

11 May 2020 16:12:54,245 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:54,245 INFO : Inserting O51E2

11 May 2020 16:12:54,425 INFO : 57% Done

11 May 2020 16:12:54,646 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:54,646 INFO : Inserting OSTP

11 May 2020 16:12:54,651 INFO : 58% Done

11 May 2020 16:12:54,855 INFO : 59% Done

11 May 2020 16:12:55,075 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:55,075 INFO : Inserting P53

11 May 2020 16:12:55,080 INFO : 60% Done

11 May 2020 16:12:55,304 INFO : 61% Done

11 May 2020 16:12:55,524 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:55,524 INFO : Inserting PAFA

11 May 2020 16:12:55,529 INFO : 62% Done

11 May 2020 16:12:55,763 INFO : 63% Done

11 May 2020 16:12:56,013 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:56,013 INFO : Inserting PGFRB

11 May 2020 16:12:56,197 INFO : 64% Done

11 May 2020 16:12:56,398 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:56,399 INFO : Inserting PK3CA

11 May 2020 16:12:56,403 INFO : 65% Done

11 May 2020 16:12:56,635 INFO : 66% Done

11 May 2020 16:12:56,843 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:56,843 INFO : Inserting RAF1

11 May 2020 16:12:56,847 INFO : 67% Done

11 May 2020 16:12:57,050 INFO : 68% Done

11 May 2020 16:12:57,210 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:57,210 INFO : Inserting SERPINI1

11 May 2020 16:12:57,214 INFO : 69% Done

11 May 2020 16:12:57,424 INFO : 70% Done

11 May 2020 16:12:57,646 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:57,646 INFO : Inserting SPINK1

11 May 2020 16:12:57,651 INFO : 71% Done

11 May 2020 16:12:57,888 INFO : 72% Done

11 May 2020 16:12:58,096 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:58,097 INFO : Inserting SPRC

11 May 2020 16:12:58,313 INFO : 73% Done

11 May 2020 16:12:58,538 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:58,539 INFO : Inserting TGFB1

11 May 2020 16:12:58,543 INFO : 74% Done

11 May 2020 16:12:58,962 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:58,962 INFO : Inserting TMPS2

11 May 2020 16:12:58,966 INFO : 75% Done

11 May 2020 16:12:59,188 INFO : 76% Done

11 May 2020 16:12:59,399 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:59,399 INFO : Inserting TPM2

11 May 2020 16:12:59,403 INFO : 77% Done

11 May 2020 16:12:59,617 INFO : 78% Done

11 May 2020 16:12:59,821 DEBUG: Total peptides inserted: 2

11 May 2020 16:12:59,821 INFO : Inserting TWST1

11 May 2020 16:12:59,826 INFO : 79% Done

11 May 2020 16:13:00,040 INFO : 80% Done

11 May 2020 16:13:00,248 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:00,248 INFO : Inserting VEGFA

11 May 2020 16:13:00,252 INFO : 81% Done

11 May 2020 16:13:00,459 INFO : 82% Done

11 May 2020 16:13:00,664 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:00,665 INFO : Inserting PSA

11 May 2020 16:13:00,669 INFO : 83% Done

11 May 2020 16:13:01,126 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:01,126 INFO : Inserting ERG_pan

11 May 2020 16:13:01,130 INFO : 84% Done

11 May 2020 16:13:01,342 INFO : 85% Done

11 May 2020 16:13:01,551 INFO : 86% Done

11 May 2020 16:13:01,769 INFO : 87% Done

11 May 2020 16:13:01,993 INFO : 88% Done

11 May 2020 16:13:02,198 INFO : 89% Done

11 May 2020 16:13:02,411 INFO : 90% Done

11 May 2020 16:13:02,614 DEBUG: Total peptides inserted: 7

11 May 2020 16:13:02,615 INFO : Inserting ETV1

11 May 2020 16:13:02,619 INFO : 91% Done

11 May 2020 16:13:02,841 INFO : 92% Done

11 May 2020 16:13:03,072 INFO : 93% Done

11 May 2020 16:13:03,312 DEBUG: Total peptides inserted: 3

11 May 2020 16:13:03,313 INFO : Inserting ERG8

11 May 2020 16:13:03,317 INFO : 94% Done

11 May 2020 16:13:03,541 INFO : 95% Done

11 May 2020 16:13:03,770 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:03,771 INFO : Inserting SMAD4

11 May 2020 16:13:03,999 INFO : 96% Done

11 May 2020 16:13:04,178 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:04,179 INFO : Inserting STAT3

11 May 2020 16:13:04,183 INFO : 97% Done

11 May 2020 16:13:04,397 INFO : 98% Done

11 May 2020 16:13:04,606 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:04,606 INFO : Done parsing Skyline document.

11 May 2020 16:13:04,608 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:13:04,756 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:13:05,580 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:13:05,758 INFO : Cleaning up temp tables

11 May 2020 16:13:06,065 INFO : Completed import of Skyline document from CPDR-FFPE-ID-273_2020-01-28_10-36-17.sky.zip

11 May 2020 16:13:06,066 INFO : 100% Done

11 May 2020 16:13:06,072 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80142/CPDR-FFPE-ID-273_2020-01-28_10-36-17.sky.zip into the system

11 May 2020 16:13:06,072 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80139/CPDR-FFPE-ID-243_2020-01-28_10-34-12/CPDR-FFPE-ID-243.skyd into the system

11 May 2020 16:13:06,073 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80139/CPDR-FFPE-ID-243_2020-01-28_10-34-12/CPDR-FFPE-ID-243.skyd into the system

11 May 2020 16:13:06,073 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80139/CPDR-FFPE-ID-243_2020-01-28_10-34-12.sky.zip into the system

11 May 2020 16:13:06,074 INFO : Starting import from CPDR-FFPE-ID-243_2020-01-28_10-34-12.sky.zip

11 May 2020 16:13:06,078 INFO : Starting to import Skyline document from CPDR-FFPE-ID-243_2020-01-28_10-34-12.sky.zip

11 May 2020 16:13:06,086 INFO : Expanding CPDR-FFPE-ID-243.skyd

11 May 2020 16:13:06,296 INFO : Expanding CPDR-FFPE-ID-243.sky.view

11 May 2020 16:13:06,297 INFO : Expanding CPDR-FFPE-ID-243.sky

11 May 2020 16:13:06,624 INFO : Inserting TFF3

11 May 2020 16:13:06,627 INFO : 1% Done

11 May 2020 16:13:06,714 INFO : 2% Done

11 May 2020 16:13:06,796 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:06,797 INFO : Inserting AKT1

11 May 2020 16:13:06,798 INFO : 3% Done

11 May 2020 16:13:06,868 INFO : 4% Done

11 May 2020 16:13:06,955 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:06,955 INFO : Inserting AMACR

11 May 2020 16:13:06,957 INFO : 5% Done

11 May 2020 16:13:07,123 INFO : 6% Done

11 May 2020 16:13:07,342 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:07,342 INFO : Inserting ANDR

11 May 2020 16:13:07,347 INFO : 7% Done

11 May 2020 16:13:07,571 INFO : 8% Done

11 May 2020 16:13:07,793 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:07,794 INFO : Inserting ANXA2

11 May 2020 16:13:08,021 INFO : 9% Done

11 May 2020 16:13:08,224 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:08,224 INFO : Inserting AURKA

11 May 2020 16:13:08,230 INFO : 10% Done

11 May 2020 16:13:08,443 INFO : 11% Done

11 May 2020 16:13:08,650 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:08,650 INFO : Inserting BRAF

11 May 2020 16:13:08,655 INFO : 12% Done

11 May 2020 16:13:08,902 INFO : 13% Done

11 May 2020 16:13:09,106 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:09,106 INFO : Inserting CAMKK2

11 May 2020 16:13:09,111 INFO : 14% Done

11 May 2020 16:13:09,319 INFO : 15% Done

11 May 2020 16:13:09,537 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:09,537 INFO : Inserting CCND1

11 May 2020 16:13:09,541 INFO : 16% Done

11 May 2020 16:13:09,951 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:09,951 INFO : Inserting CDN1A

11 May 2020 16:13:09,956 INFO : 17% Done

11 May 2020 16:13:10,166 INFO : 18% Done

11 May 2020 16:13:10,375 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:10,375 INFO : Inserting CRISP3

11 May 2020 16:13:10,380 INFO : 19% Done

11 May 2020 16:13:10,587 INFO : 20% Done

11 May 2020 16:13:10,808 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:10,808 INFO : Inserting DCOR

11 May 2020 16:13:10,812 INFO : 21% Done

11 May 2020 16:13:11,038 INFO : 22% Done

11 May 2020 16:13:11,262 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:11,262 INFO : Inserting EGFR

11 May 2020 16:13:11,266 INFO : 23% Done

11 May 2020 16:13:11,510 INFO : 24% Done

11 May 2020 16:13:11,702 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:11,702 INFO : Inserting EZH2

11 May 2020 16:13:11,706 INFO : 25% Done

11 May 2020 16:13:12,127 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:12,127 INFO : Inserting FGFR1

11 May 2020 16:13:12,343 INFO : 26% Done

11 May 2020 16:13:12,545 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:12,545 INFO : Inserting FOLH1

11 May 2020 16:13:12,549 INFO : 27% Done

11 May 2020 16:13:12,754 INFO : 28% Done

11 May 2020 16:13:12,947 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:12,947 INFO : Inserting HIF1A

11 May 2020 16:13:12,951 INFO : 29% Done

11 May 2020 16:13:13,152 INFO : 30% Done

11 May 2020 16:13:13,381 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:13,381 INFO : Inserting HPN

11 May 2020 16:13:13,385 INFO : 31% Done

11 May 2020 16:13:13,608 INFO : 32% Done

11 May 2020 16:13:13,842 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:13,842 INFO : Inserting HSPB1

11 May 2020 16:13:13,846 INFO : 33% Done

11 May 2020 16:13:14,078 INFO : 34% Done

11 May 2020 16:13:14,301 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:14,302 INFO : Inserting HXC6

11 May 2020 16:13:14,306 INFO : 35% Done

11 May 2020 16:13:14,529 INFO : 36% Done

11 May 2020 16:13:14,755 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:14,756 INFO : Inserting KLK11

11 May 2020 16:13:14,971 INFO : 37% Done

11 May 2020 16:13:15,182 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:15,182 INFO : Inserting KLK2

11 May 2020 16:13:15,186 INFO : 38% Done

11 May 2020 16:13:15,412 INFO : 39% Done

11 May 2020 16:13:15,688 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:15,689 INFO : Inserting MMP2

11 May 2020 16:13:15,693 INFO : 40% Done

11 May 2020 16:13:15,915 INFO : 41% Done

11 May 2020 16:13:16,080 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:16,080 INFO : Inserting MMP9

11 May 2020 16:13:16,084 INFO : 42% Done

11 May 2020 16:13:16,294 INFO : 43% Done

11 May 2020 16:13:16,497 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:16,497 INFO : Inserting MUC1

11 May 2020 16:13:16,502 INFO : 44% Done

11 May 2020 16:13:16,708 INFO : 45% Done

11 May 2020 16:13:16,955 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:16,955 INFO : Inserting MUC6

11 May 2020 16:13:17,171 INFO : 46% Done

11 May 2020 16:13:17,376 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:17,376 INFO : Inserting MYC

11 May 2020 16:13:17,380 INFO : 47% Done

11 May 2020 16:13:17,588 INFO : 48% Done

11 May 2020 16:13:17,790 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:17,790 INFO : Inserting MYCN

11 May 2020 16:13:17,794 INFO : 49% Done

11 May 2020 16:13:18,015 INFO : 50% Done

11 May 2020 16:13:18,220 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:18,220 INFO : Inserting MYO6

11 May 2020 16:13:18,225 INFO : 51% Done

11 May 2020 16:13:18,453 INFO : 52% Done

11 May 2020 16:13:18,691 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:18,691 INFO : Inserting NCOA2

11 May 2020 16:13:18,696 INFO : 53% Done

11 May 2020 16:13:18,947 INFO : 54% Done

11 May 2020 16:13:19,155 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:19,155 INFO : Inserting NPY

11 May 2020 16:13:19,160 INFO : 55% Done

11 May 2020 16:13:19,384 INFO : 56% Done

11 May 2020 16:13:19,592 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:19,593 INFO : Inserting O51E2

11 May 2020 16:13:19,762 INFO : 57% Done

11 May 2020 16:13:19,967 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:19,967 INFO : Inserting OSTP

11 May 2020 16:13:19,972 INFO : 58% Done

11 May 2020 16:13:20,213 INFO : 59% Done

11 May 2020 16:13:20,422 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:20,422 INFO : Inserting P53

11 May 2020 16:13:20,426 INFO : 60% Done

11 May 2020 16:13:20,639 INFO : 61% Done

11 May 2020 16:13:20,843 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:20,843 INFO : Inserting PAFA

11 May 2020 16:13:20,847 INFO : 62% Done

11 May 2020 16:13:21,088 INFO : 63% Done

11 May 2020 16:13:21,290 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:21,291 INFO : Inserting PGFRB

11 May 2020 16:13:21,463 INFO : 64% Done

11 May 2020 16:13:21,665 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:21,665 INFO : Inserting PK3CA

11 May 2020 16:13:21,669 INFO : 65% Done

11 May 2020 16:13:21,891 INFO : 66% Done

11 May 2020 16:13:22,096 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:22,096 INFO : Inserting RAF1

11 May 2020 16:13:22,100 INFO : 67% Done

11 May 2020 16:13:22,313 INFO : 68% Done

11 May 2020 16:13:22,476 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:22,476 INFO : Inserting SERPINI1

11 May 2020 16:13:22,480 INFO : 69% Done

11 May 2020 16:13:22,685 INFO : 70% Done

11 May 2020 16:13:22,889 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:22,890 INFO : Inserting SPINK1

11 May 2020 16:13:22,894 INFO : 71% Done

11 May 2020 16:13:23,111 INFO : 72% Done

11 May 2020 16:13:23,317 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:23,317 INFO : Inserting SPRC

11 May 2020 16:13:23,531 INFO : 73% Done

11 May 2020 16:13:23,736 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:23,736 INFO : Inserting TGFB1

11 May 2020 16:13:23,740 INFO : 74% Done

11 May 2020 16:13:24,158 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:24,159 INFO : Inserting TMPS2

11 May 2020 16:13:24,163 INFO : 75% Done

11 May 2020 16:13:24,371 INFO : 76% Done

11 May 2020 16:13:24,577 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:24,578 INFO : Inserting TPM2

11 May 2020 16:13:24,582 INFO : 77% Done

11 May 2020 16:13:24,812 INFO : 78% Done

11 May 2020 16:13:25,035 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:25,035 INFO : Inserting TWST1

11 May 2020 16:13:25,040 INFO : 79% Done

11 May 2020 16:13:25,294 INFO : 80% Done

11 May 2020 16:13:25,514 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:25,514 INFO : Inserting VEGFA

11 May 2020 16:13:25,519 INFO : 81% Done

11 May 2020 16:13:25,740 INFO : 82% Done

11 May 2020 16:13:25,959 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:25,959 INFO : Inserting PSA

11 May 2020 16:13:25,963 INFO : 83% Done

11 May 2020 16:13:26,186 INFO : 84% Done

11 May 2020 16:13:26,406 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:26,406 INFO : Inserting ERG_pan

11 May 2020 16:13:26,632 INFO : 85% Done

11 May 2020 16:13:26,856 INFO : 86% Done

11 May 2020 16:13:27,074 INFO : 87% Done

11 May 2020 16:13:27,281 INFO : 88% Done

11 May 2020 16:13:27,490 INFO : 89% Done

11 May 2020 16:13:27,698 INFO : 90% Done

11 May 2020 16:13:27,903 DEBUG: Total peptides inserted: 7

11 May 2020 16:13:27,903 INFO : Inserting ETV1

11 May 2020 16:13:27,907 INFO : 91% Done

11 May 2020 16:13:28,117 INFO : 92% Done

11 May 2020 16:13:28,326 INFO : 93% Done

11 May 2020 16:13:28,540 DEBUG: Total peptides inserted: 3

11 May 2020 16:13:28,540 INFO : Inserting ERG8

11 May 2020 16:13:28,545 INFO : 94% Done

11 May 2020 16:13:28,754 INFO : 95% Done

11 May 2020 16:13:28,961 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:28,961 INFO : Inserting SMAD4

11 May 2020 16:13:28,965 INFO : 96% Done

11 May 2020 16:13:29,346 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:29,346 INFO : Inserting STAT3

11 May 2020 16:13:29,351 INFO : 97% Done

11 May 2020 16:13:29,559 INFO : 98% Done

11 May 2020 16:13:29,763 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:29,763 INFO : Done parsing Skyline document.

11 May 2020 16:13:29,765 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:13:29,913 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:13:30,662 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:13:30,838 INFO : Cleaning up temp tables

11 May 2020 16:13:31,204 INFO : Completed import of Skyline document from CPDR-FFPE-ID-243_2020-01-28_10-34-12.sky.zip

11 May 2020 16:13:31,205 INFO : 100% Done

11 May 2020 16:13:31,214 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80139/CPDR-FFPE-ID-243_2020-01-28_10-34-12.sky.zip into the system

11 May 2020 16:13:31,214 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80132/CPDR-FFPE-ID-261_2020-01-28_10-30-04/CPDR-FFPE-ID-261.skyd into the system

11 May 2020 16:13:31,215 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80132/CPDR-FFPE-ID-261_2020-01-28_10-30-04/CPDR-FFPE-ID-261.skyd into the system

11 May 2020 16:13:31,215 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80132/CPDR-FFPE-ID-261_2020-01-28_10-30-04.sky.zip into the system

11 May 2020 16:13:31,218 INFO : Starting import from CPDR-FFPE-ID-261_2020-01-28_10-30-04.sky.zip

11 May 2020 16:13:31,222 INFO : Starting to import Skyline document from CPDR-FFPE-ID-261_2020-01-28_10-30-04.sky.zip

11 May 2020 16:13:31,241 INFO : Expanding CPDR-FFPE-ID-261.skyd

11 May 2020 16:13:31,676 INFO : Expanding CPDR-FFPE-ID-261.sky.view

11 May 2020 16:13:31,677 INFO : Expanding CPDR-FFPE-ID-261.sky

11 May 2020 16:13:32,444 INFO : Inserting TFF3

11 May 2020 16:13:32,450 INFO : 1% Done

11 May 2020 16:13:32,664 INFO : 2% Done

11 May 2020 16:13:32,874 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:32,874 INFO : Inserting AKT1

11 May 2020 16:13:32,878 INFO : 3% Done

11 May 2020 16:13:33,047 INFO : 4% Done

11 May 2020 16:13:33,341 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:33,341 INFO : Inserting AMACR

11 May 2020 16:13:33,346 INFO : 5% Done

11 May 2020 16:13:33,556 INFO : 6% Done

11 May 2020 16:13:33,762 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:33,762 INFO : Inserting ANDR

11 May 2020 16:13:33,766 INFO : 7% Done

11 May 2020 16:13:34,178 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:34,178 INFO : Inserting ANXA2

11 May 2020 16:13:34,182 INFO : 8% Done

11 May 2020 16:13:34,390 INFO : 9% Done

11 May 2020 16:13:34,640 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:34,640 INFO : Inserting AURKA

11 May 2020 16:13:34,644 INFO : 10% Done

11 May 2020 16:13:34,854 INFO : 11% Done

11 May 2020 16:13:35,059 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:35,059 INFO : Inserting BRAF

11 May 2020 16:13:35,063 INFO : 12% Done

11 May 2020 16:13:35,275 INFO : 13% Done

11 May 2020 16:13:35,488 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:35,488 INFO : Inserting CAMKK2

11 May 2020 16:13:35,492 INFO : 14% Done

11 May 2020 16:13:35,712 INFO : 15% Done

11 May 2020 16:13:35,919 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:35,920 INFO : Inserting CCND1

11 May 2020 16:13:35,924 INFO : 16% Done

11 May 2020 16:13:36,133 INFO : 17% Done

11 May 2020 16:13:36,300 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:36,300 INFO : Inserting CDN1A

11 May 2020 16:13:36,513 INFO : 18% Done

11 May 2020 16:13:36,718 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:36,718 INFO : Inserting CRISP3

11 May 2020 16:13:36,722 INFO : 19% Done

11 May 2020 16:13:36,996 INFO : 20% Done

11 May 2020 16:13:37,202 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:37,202 INFO : Inserting DCOR

11 May 2020 16:13:37,206 INFO : 21% Done

11 May 2020 16:13:37,412 INFO : 22% Done

11 May 2020 16:13:37,619 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:37,620 INFO : Inserting EGFR

11 May 2020 16:13:37,624 INFO : 23% Done

11 May 2020 16:13:37,892 INFO : 24% Done

11 May 2020 16:13:38,057 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:38,057 INFO : Inserting EZH2

11 May 2020 16:13:38,061 INFO : 25% Done

11 May 2020 16:13:38,476 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:38,476 INFO : Inserting FGFR1

11 May 2020 16:13:38,676 INFO : 26% Done

11 May 2020 16:13:38,863 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:38,863 INFO : Inserting FOLH1

11 May 2020 16:13:38,867 INFO : 27% Done

11 May 2020 16:13:39,058 INFO : 28% Done

11 May 2020 16:13:39,252 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:39,252 INFO : Inserting HIF1A

11 May 2020 16:13:39,256 INFO : 29% Done

11 May 2020 16:13:39,454 INFO : 30% Done

11 May 2020 16:13:39,658 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:39,658 INFO : Inserting HPN

11 May 2020 16:13:39,663 INFO : 31% Done

11 May 2020 16:13:39,887 INFO : 32% Done

11 May 2020 16:13:40,095 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:40,095 INFO : Inserting HSPB1

11 May 2020 16:13:40,099 INFO : 33% Done

11 May 2020 16:13:40,311 INFO : 34% Done

11 May 2020 16:13:40,520 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:40,521 INFO : Inserting HXC6

11 May 2020 16:13:40,525 INFO : 35% Done

11 May 2020 16:13:40,736 INFO : 36% Done

11 May 2020 16:13:40,942 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:40,942 INFO : Inserting KLK11

11 May 2020 16:13:40,946 INFO : 37% Done

11 May 2020 16:13:41,367 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:41,367 INFO : Inserting KLK2

11 May 2020 16:13:41,371 INFO : 38% Done

11 May 2020 16:13:41,582 INFO : 39% Done

11 May 2020 16:13:41,799 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:41,800 INFO : Inserting MMP2

11 May 2020 16:13:41,804 INFO : 40% Done

11 May 2020 16:13:42,016 INFO : 41% Done

11 May 2020 16:13:42,183 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:42,183 INFO : Inserting MMP9

11 May 2020 16:13:42,187 INFO : 42% Done

11 May 2020 16:13:42,399 INFO : 43% Done

11 May 2020 16:13:42,605 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:42,605 INFO : Inserting MUC1

11 May 2020 16:13:42,609 INFO : 44% Done

11 May 2020 16:13:42,824 INFO : 45% Done

11 May 2020 16:13:43,032 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:43,032 INFO : Inserting MUC6

11 May 2020 16:13:43,037 INFO : 46% Done

11 May 2020 16:13:43,453 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:43,453 INFO : Inserting MYC

11 May 2020 16:13:43,457 INFO : 47% Done

11 May 2020 16:13:43,669 INFO : 48% Done

11 May 2020 16:13:43,900 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:43,900 INFO : Inserting MYCN

11 May 2020 16:13:43,904 INFO : 49% Done

11 May 2020 16:13:44,115 INFO : 50% Done

11 May 2020 16:13:44,319 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:44,320 INFO : Inserting MYO6

11 May 2020 16:13:44,324 INFO : 51% Done

11 May 2020 16:13:44,531 INFO : 52% Done

11 May 2020 16:13:44,732 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:44,732 INFO : Inserting NCOA2

11 May 2020 16:13:44,736 INFO : 53% Done

11 May 2020 16:13:44,943 INFO : 54% Done

11 May 2020 16:13:45,144 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:45,145 INFO : Inserting NPY

11 May 2020 16:13:45,149 INFO : 55% Done

11 May 2020 16:13:45,355 INFO : 56% Done

11 May 2020 16:13:45,561 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:45,561 INFO : Inserting O51E2

11 May 2020 16:13:45,728 INFO : 57% Done

11 May 2020 16:13:45,941 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:45,941 INFO : Inserting OSTP

11 May 2020 16:13:45,946 INFO : 58% Done

11 May 2020 16:13:46,154 INFO : 59% Done

11 May 2020 16:13:46,359 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:46,359 INFO : Inserting P53

11 May 2020 16:13:46,363 INFO : 60% Done

11 May 2020 16:13:46,577 INFO : 61% Done

11 May 2020 16:13:46,783 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:46,784 INFO : Inserting PAFA

11 May 2020 16:13:46,788 INFO : 62% Done

11 May 2020 16:13:46,996 INFO : 63% Done

11 May 2020 16:13:47,198 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:47,198 INFO : Inserting PGFRB

11 May 2020 16:13:47,202 INFO : 64% Done

11 May 2020 16:13:47,645 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:47,645 INFO : Inserting PK3CA

11 May 2020 16:13:47,650 INFO : 65% Done

11 May 2020 16:13:47,886 INFO : 66% Done

11 May 2020 16:13:48,117 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:48,117 INFO : Inserting RAF1

11 May 2020 16:13:48,121 INFO : 67% Done

11 May 2020 16:13:48,361 INFO : 68% Done

11 May 2020 16:13:48,522 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:48,522 INFO : Inserting SERPINI1

11 May 2020 16:13:48,526 INFO : 69% Done

11 May 2020 16:13:48,732 INFO : 70% Done

11 May 2020 16:13:48,934 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:48,934 INFO : Inserting SPINK1

11 May 2020 16:13:48,939 INFO : 71% Done

11 May 2020 16:13:49,152 INFO : 72% Done

11 May 2020 16:13:49,356 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:49,356 INFO : Inserting SPRC

11 May 2020 16:13:49,361 INFO : 73% Done

11 May 2020 16:13:49,780 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:49,780 INFO : Inserting TGFB1

11 May 2020 16:13:49,784 INFO : 74% Done

11 May 2020 16:13:50,196 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:50,196 INFO : Inserting TMPS2

11 May 2020 16:13:50,201 INFO : 75% Done

11 May 2020 16:13:50,407 INFO : 76% Done

11 May 2020 16:13:50,612 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:50,612 INFO : Inserting TPM2

11 May 2020 16:13:50,616 INFO : 77% Done

11 May 2020 16:13:50,829 INFO : 78% Done

11 May 2020 16:13:51,026 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:51,026 INFO : Inserting TWST1

11 May 2020 16:13:51,028 INFO : 79% Done

11 May 2020 16:13:51,114 INFO : 80% Done

11 May 2020 16:13:51,196 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:51,196 INFO : Inserting VEGFA

11 May 2020 16:13:51,198 INFO : 81% Done

11 May 2020 16:13:51,281 INFO : 82% Done

11 May 2020 16:13:51,362 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:51,362 INFO : Inserting PSA

11 May 2020 16:13:51,364 INFO : 83% Done

11 May 2020 16:13:51,528 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:51,528 INFO : 84% Done

11 May 2020 16:13:51,528 INFO : Inserting ERG_pan

11 May 2020 16:13:51,622 INFO : 85% Done

11 May 2020 16:13:51,714 INFO : 86% Done

11 May 2020 16:13:51,809 INFO : 87% Done

11 May 2020 16:13:51,903 INFO : 88% Done

11 May 2020 16:13:51,993 INFO : 89% Done

11 May 2020 16:13:52,167 INFO : 90% Done

11 May 2020 16:13:52,388 DEBUG: Total peptides inserted: 7

11 May 2020 16:13:52,388 INFO : Inserting ETV1

11 May 2020 16:13:52,392 INFO : 91% Done

11 May 2020 16:13:52,614 INFO : 92% Done

11 May 2020 16:13:52,820 INFO : 93% Done

11 May 2020 16:13:53,023 DEBUG: Total peptides inserted: 3

11 May 2020 16:13:53,023 INFO : Inserting ERG8

11 May 2020 16:13:53,027 INFO : 94% Done

11 May 2020 16:13:53,233 INFO : 95% Done

11 May 2020 16:13:53,438 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:53,438 INFO : Inserting SMAD4

11 May 2020 16:13:53,659 INFO : 96% Done

11 May 2020 16:13:53,826 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:53,826 INFO : Inserting STAT3

11 May 2020 16:13:53,830 INFO : 97% Done

11 May 2020 16:13:54,034 INFO : 98% Done

11 May 2020 16:13:54,278 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:54,278 INFO : Done parsing Skyline document.

11 May 2020 16:13:54,281 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:13:54,429 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:13:55,196 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:13:55,377 INFO : Cleaning up temp tables

11 May 2020 16:13:55,687 INFO : Completed import of Skyline document from CPDR-FFPE-ID-261_2020-01-28_10-30-04.sky.zip

11 May 2020 16:13:55,688 INFO : 100% Done

11 May 2020 16:13:55,694 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80132/CPDR-FFPE-ID-261_2020-01-28_10-30-04.sky.zip into the system

11 May 2020 16:13:55,694 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80126/CPDR-FFPE-ID-268_2020-01-28_10-26-00/CPDR-FFPE-ID-268.skyd into the system

11 May 2020 16:13:55,695 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80126/CPDR-FFPE-ID-268_2020-01-28_10-26-00/CPDR-FFPE-ID-268.skyd into the system

11 May 2020 16:13:55,695 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80126/CPDR-FFPE-ID-268_2020-01-28_10-26-00.sky.zip into the system

11 May 2020 16:13:55,698 INFO : Starting import from CPDR-FFPE-ID-268_2020-01-28_10-26-00.sky.zip

11 May 2020 16:13:55,701 INFO : Starting to import Skyline document from CPDR-FFPE-ID-268_2020-01-28_10-26-00.sky.zip

11 May 2020 16:13:55,710 INFO : Expanding CPDR-FFPE-ID-268.skyd

11 May 2020 16:13:55,896 INFO : Expanding CPDR-FFPE-ID-268.sky.view

11 May 2020 16:13:55,897 INFO : Expanding CPDR-FFPE-ID-268.sky

11 May 2020 16:13:56,194 INFO : Inserting TFF3

11 May 2020 16:13:56,199 INFO : 1% Done

11 May 2020 16:13:56,314 INFO : 2% Done

11 May 2020 16:13:56,410 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:56,410 INFO : Inserting AKT1

11 May 2020 16:13:56,412 INFO : 3% Done

11 May 2020 16:13:56,492 INFO : 4% Done

11 May 2020 16:13:56,662 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:56,662 INFO : Inserting AMACR

11 May 2020 16:13:56,667 INFO : 5% Done

11 May 2020 16:13:56,878 INFO : 6% Done

11 May 2020 16:13:57,077 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:57,078 INFO : Inserting ANDR

11 May 2020 16:13:57,082 INFO : 7% Done

11 May 2020 16:13:57,486 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:57,487 INFO : Inserting ANXA2

11 May 2020 16:13:57,491 INFO : 8% Done

11 May 2020 16:13:57,694 INFO : 9% Done

11 May 2020 16:13:57,924 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:57,924 INFO : Inserting AURKA

11 May 2020 16:13:57,929 INFO : 10% Done

11 May 2020 16:13:58,132 INFO : 11% Done

11 May 2020 16:13:58,384 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:58,384 INFO : Inserting BRAF

11 May 2020 16:13:58,389 INFO : 12% Done

11 May 2020 16:13:58,595 INFO : 13% Done

11 May 2020 16:13:58,793 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:58,793 INFO : Inserting CAMKK2

11 May 2020 16:13:58,798 INFO : 14% Done

11 May 2020 16:13:59,011 INFO : 15% Done

11 May 2020 16:13:59,209 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:59,209 INFO : Inserting CCND1

11 May 2020 16:13:59,213 INFO : 16% Done

11 May 2020 16:13:59,575 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:59,576 INFO : Inserting CDN1A

11 May 2020 16:13:59,580 INFO : 17% Done

11 May 2020 16:13:59,785 INFO : 18% Done

11 May 2020 16:13:59,985 DEBUG: Total peptides inserted: 2

11 May 2020 16:13:59,986 INFO : Inserting CRISP3

11 May 2020 16:13:59,990 INFO : 19% Done

11 May 2020 16:14:00,193 INFO : 20% Done

11 May 2020 16:14:00,392 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:00,392 INFO : Inserting DCOR

11 May 2020 16:14:00,397 INFO : 21% Done

11 May 2020 16:14:00,600 INFO : 22% Done

11 May 2020 16:14:00,809 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:00,809 INFO : Inserting EGFR

11 May 2020 16:14:00,813 INFO : 23% Done

11 May 2020 16:14:01,015 INFO : 24% Done

11 May 2020 16:14:01,176 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:01,177 INFO : Inserting EZH2

11 May 2020 16:14:01,181 INFO : 25% Done

11 May 2020 16:14:01,619 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:01,619 INFO : Inserting FGFR1

11 May 2020 16:14:01,826 INFO : 26% Done

11 May 2020 16:14:02,076 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:02,076 INFO : Inserting FOLH1

11 May 2020 16:14:02,081 INFO : 27% Done

11 May 2020 16:14:02,306 INFO : 28% Done

11 May 2020 16:14:02,540 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:02,540 INFO : Inserting HIF1A

11 May 2020 16:14:02,545 INFO : 29% Done

11 May 2020 16:14:02,791 INFO : 30% Done

11 May 2020 16:14:02,995 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:02,995 INFO : Inserting HPN

11 May 2020 16:14:02,999 INFO : 31% Done

11 May 2020 16:14:03,206 INFO : 32% Done

11 May 2020 16:14:03,435 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:03,435 INFO : Inserting HSPB1

11 May 2020 16:14:03,439 INFO : 33% Done

11 May 2020 16:14:03,674 INFO : 34% Done

11 May 2020 16:14:03,907 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:03,908 INFO : Inserting HXC6

11 May 2020 16:14:03,912 INFO : 35% Done

11 May 2020 16:14:04,146 INFO : 36% Done

11 May 2020 16:14:04,378 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:04,378 INFO : Inserting KLK11

11 May 2020 16:14:04,383 INFO : 37% Done

11 May 2020 16:14:04,824 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:04,824 INFO : Inserting KLK2

11 May 2020 16:14:04,828 INFO : 38% Done

11 May 2020 16:14:05,050 INFO : 39% Done

11 May 2020 16:14:05,256 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:05,256 INFO : Inserting MMP2

11 May 2020 16:14:05,260 INFO : 40% Done

11 May 2020 16:14:05,467 INFO : 41% Done

11 May 2020 16:14:05,632 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:05,632 INFO : Inserting MMP9

11 May 2020 16:14:05,636 INFO : 42% Done

11 May 2020 16:14:05,857 INFO : 43% Done

11 May 2020 16:14:06,091 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:06,091 INFO : Inserting MUC1

11 May 2020 16:14:06,096 INFO : 44% Done

11 May 2020 16:14:06,331 INFO : 45% Done

11 May 2020 16:14:06,575 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:06,575 INFO : Inserting MUC6

11 May 2020 16:14:06,580 INFO : 46% Done

11 May 2020 16:14:06,994 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:06,995 INFO : Inserting MYC

11 May 2020 16:14:06,999 INFO : 47% Done

11 May 2020 16:14:07,236 INFO : 48% Done

11 May 2020 16:14:07,468 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:07,468 INFO : Inserting MYCN

11 May 2020 16:14:07,473 INFO : 49% Done

11 May 2020 16:14:07,712 INFO : 50% Done

11 May 2020 16:14:07,944 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:07,944 INFO : Inserting MYO6

11 May 2020 16:14:07,949 INFO : 51% Done

11 May 2020 16:14:08,184 INFO : 52% Done

11 May 2020 16:14:08,405 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:08,406 INFO : Inserting NCOA2

11 May 2020 16:14:08,410 INFO : 53% Done

11 May 2020 16:14:08,619 INFO : 54% Done

11 May 2020 16:14:08,824 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:08,824 INFO : Inserting NPY

11 May 2020 16:14:08,828 INFO : 55% Done

11 May 2020 16:14:09,053 INFO : 56% Done

11 May 2020 16:14:09,277 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:09,277 INFO : Inserting O51E2

11 May 2020 16:14:09,460 INFO : 57% Done

11 May 2020 16:14:09,691 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:09,691 INFO : Inserting OSTP

11 May 2020 16:14:09,695 INFO : 58% Done

11 May 2020 16:14:09,918 INFO : 59% Done

11 May 2020 16:14:10,122 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:10,122 INFO : Inserting P53

11 May 2020 16:14:10,126 INFO : 60% Done

11 May 2020 16:14:10,321 INFO : 61% Done

11 May 2020 16:14:10,506 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:10,506 INFO : Inserting PAFA

11 May 2020 16:14:10,508 INFO : 62% Done

11 May 2020 16:14:10,718 INFO : 63% Done

11 May 2020 16:14:10,926 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:10,926 INFO : Inserting PGFRB

11 May 2020 16:14:10,930 INFO : 64% Done

11 May 2020 16:14:11,305 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:11,305 INFO : Inserting PK3CA

11 May 2020 16:14:11,309 INFO : 65% Done

11 May 2020 16:14:11,517 INFO : 66% Done

11 May 2020 16:14:11,733 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:11,733 INFO : Inserting RAF1

11 May 2020 16:14:11,738 INFO : 67% Done

11 May 2020 16:14:11,952 INFO : 68% Done

11 May 2020 16:14:12,189 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:12,190 INFO : Inserting SERPINI1

11 May 2020 16:14:12,195 INFO : 69% Done

11 May 2020 16:14:12,427 INFO : 70% Done

11 May 2020 16:14:12,638 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:12,638 INFO : Inserting SPINK1

11 May 2020 16:14:12,642 INFO : 71% Done

11 May 2020 16:14:12,857 INFO : 72% Done

11 May 2020 16:14:13,064 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:13,064 INFO : Inserting SPRC

11 May 2020 16:14:13,282 INFO : 73% Done

11 May 2020 16:14:13,491 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:13,491 INFO : Inserting TGFB1

11 May 2020 16:14:13,495 INFO : 74% Done

11 May 2020 16:14:13,932 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:13,932 INFO : Inserting TMPS2

11 May 2020 16:14:13,936 INFO : 75% Done

11 May 2020 16:14:14,136 INFO : 76% Done

11 May 2020 16:14:14,331 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:14,331 INFO : Inserting TPM2

11 May 2020 16:14:14,335 INFO : 77% Done

11 May 2020 16:14:14,535 INFO : 78% Done

11 May 2020 16:14:14,731 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:14,731 INFO : Inserting TWST1

11 May 2020 16:14:14,735 INFO : 79% Done

11 May 2020 16:14:14,934 INFO : 80% Done

11 May 2020 16:14:15,140 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:15,140 INFO : Inserting VEGFA

11 May 2020 16:14:15,144 INFO : 81% Done

11 May 2020 16:14:15,351 INFO : 82% Done

11 May 2020 16:14:15,552 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:15,552 INFO : Inserting PSA

11 May 2020 16:14:15,556 INFO : 83% Done

11 May 2020 16:14:15,970 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:15,971 INFO : 84% Done

11 May 2020 16:14:15,971 INFO : Inserting ERG_pan

11 May 2020 16:14:16,190 INFO : 85% Done

11 May 2020 16:14:16,401 INFO : 86% Done

11 May 2020 16:14:16,609 INFO : 87% Done

11 May 2020 16:14:16,875 INFO : 88% Done

11 May 2020 16:14:17,086 INFO : 89% Done

11 May 2020 16:14:17,333 INFO : 90% Done

11 May 2020 16:14:17,540 DEBUG: Total peptides inserted: 7

11 May 2020 16:14:17,540 INFO : Inserting ETV1

11 May 2020 16:14:17,544 INFO : 91% Done

11 May 2020 16:14:17,755 INFO : 92% Done

11 May 2020 16:14:17,966 INFO : 93% Done

11 May 2020 16:14:18,176 DEBUG: Total peptides inserted: 3

11 May 2020 16:14:18,176 INFO : Inserting ERG8

11 May 2020 16:14:18,181 INFO : 94% Done

11 May 2020 16:14:18,392 INFO : 95% Done

11 May 2020 16:14:18,601 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:18,602 INFO : Inserting SMAD4

11 May 2020 16:14:18,606 INFO : 96% Done

11 May 2020 16:14:18,991 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:18,992 INFO : Inserting STAT3

11 May 2020 16:14:18,996 INFO : 97% Done

11 May 2020 16:14:19,241 INFO : 98% Done

11 May 2020 16:14:19,444 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:19,444 INFO : Done parsing Skyline document.

11 May 2020 16:14:19,446 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:14:19,594 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:14:20,565 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:14:20,745 INFO : Cleaning up temp tables

11 May 2020 16:14:21,128 INFO : Completed import of Skyline document from CPDR-FFPE-ID-268_2020-01-28_10-26-00.sky.zip

11 May 2020 16:14:21,130 INFO : 100% Done

11 May 2020 16:14:21,143 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80126/CPDR-FFPE-ID-268_2020-01-28_10-26-00.sky.zip into the system

11 May 2020 16:14:21,143 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80118/CPDR-FFPE-ID-209_2020-01-28_10-24-12/CPDR-FFPE-ID-209.skyd into the system

11 May 2020 16:14:21,144 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80118/CPDR-FFPE-ID-209_2020-01-28_10-24-12/CPDR-FFPE-ID-209.skyd into the system

11 May 2020 16:14:21,144 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80118/CPDR-FFPE-ID-209_2020-01-28_10-24-12.sky.zip into the system

11 May 2020 16:14:21,149 INFO : Starting import from CPDR-FFPE-ID-209_2020-01-28_10-24-12.sky.zip

11 May 2020 16:14:21,156 INFO : Starting to import Skyline document from CPDR-FFPE-ID-209_2020-01-28_10-24-12.sky.zip

11 May 2020 16:14:21,173 INFO : Expanding CPDR-FFPE-ID-209.skyd

11 May 2020 16:14:21,600 INFO : Expanding CPDR-FFPE-ID-209.sky.view

11 May 2020 16:14:21,601 INFO : Expanding CPDR-FFPE-ID-209.sky

11 May 2020 16:14:22,250 INFO : Inserting TFF3

11 May 2020 16:14:22,256 INFO : 1% Done

11 May 2020 16:14:22,448 INFO : 2% Done

11 May 2020 16:14:22,643 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:22,643 INFO : Inserting AKT1

11 May 2020 16:14:22,647 INFO : 3% Done

11 May 2020 16:14:22,889 INFO : 4% Done

11 May 2020 16:14:23,096 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:23,096 INFO : Inserting AMACR

11 May 2020 16:14:23,101 INFO : 5% Done

11 May 2020 16:14:23,308 INFO : 6% Done

11 May 2020 16:14:23,512 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:23,513 INFO : Inserting ANDR

11 May 2020 16:14:23,517 INFO : 7% Done

11 May 2020 16:14:23,727 INFO : 8% Done

11 May 2020 16:14:23,934 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:23,934 INFO : Inserting ANXA2

11 May 2020 16:14:24,167 INFO : 9% Done

11 May 2020 16:14:24,373 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:24,374 INFO : Inserting AURKA

11 May 2020 16:14:24,378 INFO : 10% Done

11 May 2020 16:14:24,616 INFO : 11% Done

11 May 2020 16:14:24,827 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:24,827 INFO : Inserting BRAF

11 May 2020 16:14:24,831 INFO : 12% Done

11 May 2020 16:14:25,039 INFO : 13% Done

11 May 2020 16:14:25,248 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:25,248 INFO : Inserting CAMKK2

11 May 2020 16:14:25,252 INFO : 14% Done

11 May 2020 16:14:25,464 INFO : 15% Done

11 May 2020 16:14:25,671 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:25,671 INFO : Inserting CCND1

11 May 2020 16:14:25,675 INFO : 16% Done

11 May 2020 16:14:26,058 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:26,058 INFO : Inserting CDN1A

11 May 2020 16:14:26,062 INFO : 17% Done

11 May 2020 16:14:26,274 INFO : 18% Done

11 May 2020 16:14:26,479 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:26,480 INFO : Inserting CRISP3

11 May 2020 16:14:26,484 INFO : 19% Done

11 May 2020 16:14:26,689 INFO : 20% Done

11 May 2020 16:14:26,894 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:26,894 INFO : Inserting DCOR

11 May 2020 16:14:26,899 INFO : 21% Done

11 May 2020 16:14:27,108 INFO : 22% Done

11 May 2020 16:14:27,315 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:27,315 INFO : Inserting EGFR

11 May 2020 16:14:27,320 INFO : 23% Done

11 May 2020 16:14:27,527 INFO : 24% Done

11 May 2020 16:14:27,689 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:27,690 INFO : Inserting EZH2

11 May 2020 16:14:27,694 INFO : 25% Done

11 May 2020 16:14:28,126 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:28,127 INFO : Inserting FGFR1

11 May 2020 16:14:28,375 INFO : 26% Done

11 May 2020 16:14:28,614 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:28,614 INFO : Inserting FOLH1

11 May 2020 16:14:28,620 INFO : 27% Done

11 May 2020 16:14:28,855 INFO : 28% Done

11 May 2020 16:14:29,176 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:29,177 INFO : Inserting HIF1A

11 May 2020 16:14:29,181 INFO : 29% Done

11 May 2020 16:14:29,395 INFO : 30% Done

11 May 2020 16:14:29,567 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:29,567 INFO : Inserting HPN

11 May 2020 16:14:29,569 INFO : 31% Done

11 May 2020 16:14:29,651 INFO : 32% Done

11 May 2020 16:14:29,734 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:29,735 INFO : Inserting HSPB1

11 May 2020 16:14:29,736 INFO : 33% Done

11 May 2020 16:14:29,819 INFO : 34% Done

11 May 2020 16:14:29,911 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:29,911 INFO : Inserting HXC6

11 May 2020 16:14:29,913 INFO : 35% Done

11 May 2020 16:14:29,997 INFO : 36% Done

11 May 2020 16:14:30,189 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:30,189 INFO : Inserting KLK11

11 May 2020 16:14:30,410 INFO : 37% Done

11 May 2020 16:14:30,631 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:30,631 INFO : Inserting KLK2

11 May 2020 16:14:30,636 INFO : 38% Done

11 May 2020 16:14:30,845 INFO : 39% Done

11 May 2020 16:14:31,055 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:31,056 INFO : Inserting MMP2

11 May 2020 16:14:31,060 INFO : 40% Done

11 May 2020 16:14:31,290 INFO : 41% Done

11 May 2020 16:14:31,598 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:31,598 INFO : Inserting MMP9

11 May 2020 16:14:31,603 INFO : 42% Done

11 May 2020 16:14:31,818 INFO : 43% Done

11 May 2020 16:14:32,021 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:32,021 INFO : Inserting MUC1

11 May 2020 16:14:32,026 INFO : 44% Done

11 May 2020 16:14:32,230 INFO : 45% Done

11 May 2020 16:14:32,438 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:32,438 INFO : Inserting MUC6

11 May 2020 16:14:32,647 INFO : 46% Done

11 May 2020 16:14:32,851 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:32,852 INFO : Inserting MYC

11 May 2020 16:14:32,856 INFO : 47% Done

11 May 2020 16:14:33,064 INFO : 48% Done

11 May 2020 16:14:33,274 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:33,275 INFO : Inserting MYCN

11 May 2020 16:14:33,279 INFO : 49% Done

11 May 2020 16:14:33,495 INFO : 50% Done

11 May 2020 16:14:33,704 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:33,704 INFO : Inserting MYO6

11 May 2020 16:14:33,709 INFO : 51% Done

11 May 2020 16:14:33,918 INFO : 52% Done

11 May 2020 16:14:34,123 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:34,123 INFO : Inserting NCOA2

11 May 2020 16:14:34,128 INFO : 53% Done

11 May 2020 16:14:34,339 INFO : 54% Done

11 May 2020 16:14:34,544 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:34,544 INFO : Inserting NPY

11 May 2020 16:14:34,548 INFO : 55% Done

11 May 2020 16:14:34,763 INFO : 56% Done

11 May 2020 16:14:34,966 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:34,966 INFO : Inserting O51E2

11 May 2020 16:14:35,139 INFO : 57% Done

11 May 2020 16:14:35,344 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:35,344 INFO : Inserting OSTP

11 May 2020 16:14:35,348 INFO : 58% Done

11 May 2020 16:14:35,557 INFO : 59% Done

11 May 2020 16:14:35,761 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:35,761 INFO : Inserting P53

11 May 2020 16:14:35,766 INFO : 60% Done

11 May 2020 16:14:35,995 INFO : 61% Done

11 May 2020 16:14:36,227 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:36,228 INFO : Inserting PAFA

11 May 2020 16:14:36,232 INFO : 62% Done

11 May 2020 16:14:36,468 INFO : 63% Done

11 May 2020 16:14:36,698 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:36,698 INFO : Inserting PGFRB

11 May 2020 16:14:36,892 INFO : 64% Done

11 May 2020 16:14:37,124 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:37,124 INFO : Inserting PK3CA

11 May 2020 16:14:37,128 INFO : 65% Done

11 May 2020 16:14:37,360 INFO : 66% Done

11 May 2020 16:14:37,592 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:37,592 INFO : Inserting RAF1

11 May 2020 16:14:37,597 INFO : 67% Done

11 May 2020 16:14:37,829 INFO : 68% Done

11 May 2020 16:14:38,117 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:38,117 INFO : Inserting SERPINI1

11 May 2020 16:14:38,122 INFO : 69% Done

11 May 2020 16:14:38,356 INFO : 70% Done

11 May 2020 16:14:38,585 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:38,586 INFO : Inserting SPINK1

11 May 2020 16:14:38,590 INFO : 71% Done

11 May 2020 16:14:38,847 INFO : 72% Done

11 May 2020 16:14:39,079 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:39,079 INFO : Inserting SPRC

11 May 2020 16:14:39,318 INFO : 73% Done

11 May 2020 16:14:39,547 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:39,547 INFO : Inserting TGFB1

11 May 2020 16:14:39,551 INFO : 74% Done

11 May 2020 16:14:40,067 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:40,067 INFO : Inserting TMPS2

11 May 2020 16:14:40,072 INFO : 75% Done

11 May 2020 16:14:40,305 INFO : 76% Done

11 May 2020 16:14:40,536 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:40,536 INFO : Inserting TPM2

11 May 2020 16:14:40,540 INFO : 77% Done

11 May 2020 16:14:40,784 INFO : 78% Done

11 May 2020 16:14:41,014 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:41,014 INFO : Inserting TWST1

11 May 2020 16:14:41,018 INFO : 79% Done

11 May 2020 16:14:41,251 INFO : 80% Done

11 May 2020 16:14:41,481 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:41,481 INFO : Inserting VEGFA

11 May 2020 16:14:41,486 INFO : 81% Done

11 May 2020 16:14:41,762 INFO : 82% Done

11 May 2020 16:14:41,992 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:41,992 INFO : Inserting PSA

11 May 2020 16:14:41,997 INFO : 83% Done

11 May 2020 16:14:42,231 INFO : 84% Done

11 May 2020 16:14:42,461 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:42,461 INFO : Inserting ERG_pan

11 May 2020 16:14:42,700 INFO : 85% Done

11 May 2020 16:14:42,934 INFO : 86% Done

11 May 2020 16:14:43,184 INFO : 87% Done

11 May 2020 16:14:43,438 INFO : 88% Done

11 May 2020 16:14:43,670 INFO : 89% Done

11 May 2020 16:14:43,902 INFO : 90% Done

11 May 2020 16:14:44,132 DEBUG: Total peptides inserted: 7

11 May 2020 16:14:44,132 INFO : Inserting ETV1

11 May 2020 16:14:44,136 INFO : 91% Done

11 May 2020 16:14:44,370 INFO : 92% Done

11 May 2020 16:14:44,603 INFO : 93% Done

11 May 2020 16:14:44,833 DEBUG: Total peptides inserted: 3

11 May 2020 16:14:44,833 INFO : Inserting ERG8

11 May 2020 16:14:44,838 INFO : 94% Done

11 May 2020 16:14:45,070 INFO : 95% Done

11 May 2020 16:14:45,303 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:45,304 INFO : Inserting SMAD4

11 May 2020 16:14:45,308 INFO : 96% Done

11 May 2020 16:14:45,731 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:45,731 INFO : Inserting STAT3

11 May 2020 16:14:45,736 INFO : 97% Done

11 May 2020 16:14:45,968 INFO : 98% Done

11 May 2020 16:14:46,197 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:46,198 INFO : Done parsing Skyline document.

11 May 2020 16:14:46,200 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:14:46,348 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:14:47,148 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:14:47,332 INFO : Cleaning up temp tables

11 May 2020 16:14:47,719 INFO : Completed import of Skyline document from CPDR-FFPE-ID-209_2020-01-28_10-24-12.sky.zip

11 May 2020 16:14:47,721 INFO : 100% Done

11 May 2020 16:14:47,732 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80118/CPDR-FFPE-ID-209_2020-01-28_10-24-12.sky.zip into the system

11 May 2020 16:14:47,732 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80117/CPDR-FFPE-ID-223_2020-01-28_10-23-35/CPDR-FFPE-ID-223.skyd into the system

11 May 2020 16:14:47,734 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80117/CPDR-FFPE-ID-223_2020-01-28_10-23-35/CPDR-FFPE-ID-223.skyd into the system

11 May 2020 16:14:47,734 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80117/CPDR-FFPE-ID-223_2020-01-28_10-23-35.sky.zip into the system

11 May 2020 16:14:47,738 INFO : Starting import from CPDR-FFPE-ID-223_2020-01-28_10-23-35.sky.zip

11 May 2020 16:14:47,744 INFO : Starting to import Skyline document from CPDR-FFPE-ID-223_2020-01-28_10-23-35.sky.zip

11 May 2020 16:14:47,760 INFO : Expanding CPDR-FFPE-ID-223.skyd

11 May 2020 16:14:48,194 INFO : Expanding CPDR-FFPE-ID-223.sky.view

11 May 2020 16:14:48,195 INFO : Expanding CPDR-FFPE-ID-223.sky

11 May 2020 16:14:48,670 INFO : Inserting TFF3

11 May 2020 16:14:48,674 INFO : 1% Done

11 May 2020 16:14:48,771 INFO : 2% Done

11 May 2020 16:14:48,862 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:48,862 INFO : Inserting AKT1

11 May 2020 16:14:48,864 INFO : 3% Done

11 May 2020 16:14:48,937 INFO : 4% Done

11 May 2020 16:14:49,049 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:49,049 INFO : Inserting AMACR

11 May 2020 16:14:49,054 INFO : 5% Done

11 May 2020 16:14:49,287 INFO : 6% Done

11 May 2020 16:14:49,518 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:49,518 INFO : Inserting ANDR

11 May 2020 16:14:49,522 INFO : 7% Done

11 May 2020 16:14:49,986 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:49,986 INFO : 8% Done

11 May 2020 16:14:49,986 INFO : Inserting ANXA2

11 May 2020 16:14:50,225 INFO : 9% Done

11 May 2020 16:14:50,457 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:50,458 INFO : Inserting AURKA

11 May 2020 16:14:50,462 INFO : 10% Done

11 May 2020 16:14:50,696 INFO : 11% Done

11 May 2020 16:14:50,927 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:50,927 INFO : Inserting BRAF

11 May 2020 16:14:50,931 INFO : 12% Done

11 May 2020 16:14:51,166 INFO : 13% Done

11 May 2020 16:14:51,396 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:51,396 INFO : Inserting CAMKK2

11 May 2020 16:14:51,401 INFO : 14% Done

11 May 2020 16:14:51,635 INFO : 15% Done

11 May 2020 16:14:51,865 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:51,865 INFO : Inserting CCND1

11 May 2020 16:14:51,870 INFO : 16% Done

11 May 2020 16:14:52,288 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:52,289 INFO : Inserting CDN1A

11 May 2020 16:14:52,293 INFO : 17% Done

11 May 2020 16:14:52,528 INFO : 18% Done

11 May 2020 16:14:52,758 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:52,758 INFO : Inserting CRISP3

11 May 2020 16:14:52,763 INFO : 19% Done

11 May 2020 16:14:52,996 INFO : 20% Done

11 May 2020 16:14:53,226 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:53,227 INFO : Inserting DCOR

11 May 2020 16:14:53,231 INFO : 21% Done

11 May 2020 16:14:53,464 INFO : 22% Done

11 May 2020 16:14:53,694 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:53,695 INFO : Inserting EGFR

11 May 2020 16:14:53,699 INFO : 23% Done

11 May 2020 16:14:53,931 INFO : 24% Done

11 May 2020 16:14:54,118 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:54,119 INFO : Inserting EZH2

11 May 2020 16:14:54,123 INFO : 25% Done

11 May 2020 16:14:54,582 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:54,583 INFO : Inserting FGFR1

11 May 2020 16:14:54,819 INFO : 26% Done

11 May 2020 16:14:55,048 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:55,049 INFO : Inserting FOLH1

11 May 2020 16:14:55,053 INFO : 27% Done

11 May 2020 16:14:55,322 INFO : 28% Done

11 May 2020 16:14:55,553 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:55,553 INFO : Inserting HIF1A

11 May 2020 16:14:55,557 INFO : 29% Done

11 May 2020 16:14:55,791 INFO : 30% Done

11 May 2020 16:14:56,071 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:56,072 INFO : Inserting HPN

11 May 2020 16:14:56,076 INFO : 31% Done

11 May 2020 16:14:56,348 INFO : 32% Done

11 May 2020 16:14:56,580 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:56,580 INFO : Inserting HSPB1

11 May 2020 16:14:56,584 INFO : 33% Done

11 May 2020 16:14:56,829 INFO : 34% Done

11 May 2020 16:14:57,077 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:57,077 INFO : Inserting HXC6

11 May 2020 16:14:57,081 INFO : 35% Done

11 May 2020 16:14:57,316 INFO : 36% Done

11 May 2020 16:14:57,568 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:57,568 INFO : Inserting KLK11

11 May 2020 16:14:57,807 INFO : 37% Done

11 May 2020 16:14:58,038 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:58,038 INFO : Inserting KLK2

11 May 2020 16:14:58,042 INFO : 38% Done

11 May 2020 16:14:58,262 INFO : 39% Done

11 May 2020 16:14:58,500 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:58,500 INFO : Inserting MMP2

11 May 2020 16:14:58,504 INFO : 40% Done

11 May 2020 16:14:58,712 INFO : 41% Done

11 May 2020 16:14:58,878 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:58,878 INFO : Inserting MMP9

11 May 2020 16:14:58,882 INFO : 42% Done

11 May 2020 16:14:59,144 INFO : 43% Done

11 May 2020 16:14:59,356 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:59,357 INFO : Inserting MUC1

11 May 2020 16:14:59,361 INFO : 44% Done

11 May 2020 16:14:59,580 INFO : 45% Done

11 May 2020 16:14:59,799 DEBUG: Total peptides inserted: 2

11 May 2020 16:14:59,799 INFO : Inserting MUC6

11 May 2020 16:14:59,803 INFO : 46% Done

11 May 2020 16:15:00,228 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:00,228 INFO : Inserting MYC

11 May 2020 16:15:00,232 INFO : 47% Done

11 May 2020 16:15:00,441 INFO : 48% Done

11 May 2020 16:15:00,641 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:00,642 INFO : Inserting MYCN

11 May 2020 16:15:00,646 INFO : 49% Done

11 May 2020 16:15:00,865 INFO : 50% Done

11 May 2020 16:15:01,082 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:01,082 INFO : Inserting MYO6

11 May 2020 16:15:01,087 INFO : 51% Done

11 May 2020 16:15:01,297 INFO : 52% Done

11 May 2020 16:15:01,510 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:01,510 INFO : Inserting NCOA2

11 May 2020 16:15:01,515 INFO : 53% Done

11 May 2020 16:15:01,727 INFO : 54% Done

11 May 2020 16:15:01,953 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:01,953 INFO : Inserting NPY

11 May 2020 16:15:01,957 INFO : 55% Done

11 May 2020 16:15:02,196 INFO : 56% Done

11 May 2020 16:15:02,434 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:02,434 INFO : Inserting O51E2

11 May 2020 16:15:02,633 INFO : 57% Done

11 May 2020 16:15:02,877 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:02,877 INFO : Inserting OSTP

11 May 2020 16:15:02,883 INFO : 58% Done

11 May 2020 16:15:03,129 INFO : 59% Done

11 May 2020 16:15:03,335 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:03,335 INFO : Inserting P53

11 May 2020 16:15:03,340 INFO : 60% Done

11 May 2020 16:15:03,550 INFO : 61% Done

11 May 2020 16:15:03,754 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:03,754 INFO : Inserting PAFA

11 May 2020 16:15:03,759 INFO : 62% Done

11 May 2020 16:15:03,980 INFO : 63% Done

11 May 2020 16:15:04,202 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:04,202 INFO : Inserting PGFRB

11 May 2020 16:15:04,376 INFO : 64% Done

11 May 2020 16:15:04,580 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:04,580 INFO : Inserting PK3CA

11 May 2020 16:15:04,584 INFO : 65% Done

11 May 2020 16:15:04,794 INFO : 66% Done

11 May 2020 16:15:04,998 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:04,998 INFO : Inserting RAF1

11 May 2020 16:15:05,003 INFO : 67% Done

11 May 2020 16:15:05,237 INFO : 68% Done

11 May 2020 16:15:05,430 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:05,431 INFO : Inserting SERPINI1

11 May 2020 16:15:05,435 INFO : 69% Done

11 May 2020 16:15:05,663 INFO : 70% Done

11 May 2020 16:15:05,869 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:05,870 INFO : Inserting SPINK1

11 May 2020 16:15:05,874 INFO : 71% Done

11 May 2020 16:15:06,085 INFO : 72% Done

11 May 2020 16:15:06,289 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:06,289 INFO : Inserting SPRC

11 May 2020 16:15:06,293 INFO : 73% Done

11 May 2020 16:15:06,707 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:06,708 INFO : Inserting TGFB1

11 May 2020 16:15:06,712 INFO : 74% Done

11 May 2020 16:15:07,122 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:07,122 INFO : Inserting TMPS2

11 May 2020 16:15:07,126 INFO : 75% Done

11 May 2020 16:15:07,344 INFO : 76% Done

11 May 2020 16:15:07,549 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:07,549 INFO : Inserting TPM2

11 May 2020 16:15:07,554 INFO : 77% Done

11 May 2020 16:15:07,761 INFO : 78% Done

11 May 2020 16:15:07,965 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:07,965 INFO : Inserting TWST1

11 May 2020 16:15:07,969 INFO : 79% Done

11 May 2020 16:15:08,180 INFO : 80% Done

11 May 2020 16:15:08,386 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:08,387 INFO : Inserting VEGFA

11 May 2020 16:15:08,391 INFO : 81% Done

11 May 2020 16:15:08,605 INFO : 82% Done

11 May 2020 16:15:08,814 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:08,815 INFO : Inserting PSA

11 May 2020 16:15:08,819 INFO : 83% Done

11 May 2020 16:15:09,234 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:09,234 INFO : Inserting ERG_pan

11 May 2020 16:15:09,238 INFO : 84% Done

11 May 2020 16:15:09,448 INFO : 85% Done

11 May 2020 16:15:09,662 INFO : 86% Done

11 May 2020 16:15:09,870 INFO : 87% Done

11 May 2020 16:15:10,072 INFO : 88% Done

11 May 2020 16:15:10,274 INFO : 89% Done

11 May 2020 16:15:10,477 INFO : 90% Done

11 May 2020 16:15:10,676 DEBUG: Total peptides inserted: 7

11 May 2020 16:15:10,676 INFO : Inserting ETV1

11 May 2020 16:15:10,680 INFO : 91% Done

11 May 2020 16:15:10,881 INFO : 92% Done

11 May 2020 16:15:11,083 INFO : 93% Done

11 May 2020 16:15:11,285 DEBUG: Total peptides inserted: 3

11 May 2020 16:15:11,285 INFO : Inserting ERG8

11 May 2020 16:15:11,290 INFO : 94% Done

11 May 2020 16:15:11,497 INFO : 95% Done

11 May 2020 16:15:11,702 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:11,702 INFO : Inserting SMAD4

11 May 2020 16:15:11,917 INFO : 96% Done

11 May 2020 16:15:12,079 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:12,079 INFO : Inserting STAT3

11 May 2020 16:15:12,083 INFO : 97% Done

11 May 2020 16:15:12,288 INFO : 98% Done

11 May 2020 16:15:12,488 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:12,488 INFO : Done parsing Skyline document.

11 May 2020 16:15:12,490 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:15:12,638 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:15:13,281 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:15:13,469 INFO : Cleaning up temp tables

11 May 2020 16:15:13,471 INFO : Completed import of Skyline document from CPDR-FFPE-ID-223_2020-01-28_10-23-35.sky.zip

11 May 2020 16:15:13,483 INFO : 100% Done

11 May 2020 16:15:13,489 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80117/CPDR-FFPE-ID-223_2020-01-28_10-23-35.sky.zip into the system

11 May 2020 16:15:13,490 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80184/CPDR-FFPE-ID-324_2020-01-28_11-04-12/CPDR-FFPE-ID-324.skyd into the system

11 May 2020 16:15:13,491 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80184/CPDR-FFPE-ID-324_2020-01-28_11-04-12/CPDR-FFPE-ID-324.skyd into the system

11 May 2020 16:15:13,491 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80184/CPDR-FFPE-ID-324_2020-01-28_11-04-12.sky.zip into the system

11 May 2020 16:15:13,494 INFO : Starting import from CPDR-FFPE-ID-324_2020-01-28_11-04-12.sky.zip

11 May 2020 16:15:13,497 INFO : Starting to import Skyline document from CPDR-FFPE-ID-324_2020-01-28_11-04-12.sky.zip

11 May 2020 16:15:13,506 INFO : Expanding CPDR-FFPE-ID-324.skyd

11 May 2020 16:15:13,926 INFO : Expanding CPDR-FFPE-ID-324.sky.view

11 May 2020 16:15:13,926 INFO : Expanding CPDR-FFPE-ID-324.sky

11 May 2020 16:15:14,248 INFO : Inserting TFF3

11 May 2020 16:15:14,252 INFO : 1% Done

11 May 2020 16:15:14,338 INFO : 2% Done

11 May 2020 16:15:14,417 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:14,417 INFO : Inserting AKT1

11 May 2020 16:15:14,418 INFO : 3% Done

11 May 2020 16:15:14,550 INFO : 4% Done

11 May 2020 16:15:14,750 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:14,750 INFO : Inserting AMACR

11 May 2020 16:15:14,754 INFO : 5% Done

11 May 2020 16:15:14,955 INFO : 6% Done

11 May 2020 16:15:15,154 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:15,154 INFO : Inserting ANDR

11 May 2020 16:15:15,158 INFO : 7% Done

11 May 2020 16:15:15,571 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:15,572 INFO : 8% Done

11 May 2020 16:15:15,572 INFO : Inserting ANXA2

11 May 2020 16:15:15,780 INFO : 9% Done

11 May 2020 16:15:15,980 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:15,981 INFO : Inserting AURKA

11 May 2020 16:15:15,985 INFO : 10% Done

11 May 2020 16:15:16,187 INFO : 11% Done

11 May 2020 16:15:16,386 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:16,386 INFO : Inserting BRAF

11 May 2020 16:15:16,390 INFO : 12% Done

11 May 2020 16:15:16,592 INFO : 13% Done

11 May 2020 16:15:16,792 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:16,792 INFO : Inserting CAMKK2

11 May 2020 16:15:16,796 INFO : 14% Done

11 May 2020 16:15:17,003 INFO : 15% Done

11 May 2020 16:15:17,249 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:17,250 INFO : Inserting CCND1

11 May 2020 16:15:17,254 INFO : 16% Done

11 May 2020 16:15:17,630 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:17,630 INFO : Inserting CDN1A

11 May 2020 16:15:17,634 INFO : 17% Done

11 May 2020 16:15:17,850 INFO : 18% Done

11 May 2020 16:15:18,051 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:18,052 INFO : Inserting CRISP3

11 May 2020 16:15:18,056 INFO : 19% Done

11 May 2020 16:15:18,262 INFO : 20% Done

11 May 2020 16:15:18,460 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:18,460 INFO : Inserting DCOR

11 May 2020 16:15:18,464 INFO : 21% Done

11 May 2020 16:15:18,666 INFO : 22% Done

11 May 2020 16:15:18,877 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:18,877 INFO : Inserting EGFR

11 May 2020 16:15:18,881 INFO : 23% Done

11 May 2020 16:15:19,085 INFO : 24% Done

11 May 2020 16:15:19,247 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:19,248 INFO : Inserting EZH2

11 May 2020 16:15:19,252 INFO : 25% Done

11 May 2020 16:15:19,662 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:19,662 INFO : Inserting FGFR1

11 May 2020 16:15:19,872 INFO : 26% Done

11 May 2020 16:15:20,113 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:20,113 INFO : Inserting FOLH1

11 May 2020 16:15:20,117 INFO : 27% Done

11 May 2020 16:15:20,326 INFO : 28% Done

11 May 2020 16:15:20,537 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:20,537 INFO : Inserting HIF1A

11 May 2020 16:15:20,542 INFO : 29% Done

11 May 2020 16:15:20,747 INFO : 30% Done

11 May 2020 16:15:20,951 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:20,952 INFO : Inserting HPN

11 May 2020 16:15:20,956 INFO : 31% Done

11 May 2020 16:15:21,166 INFO : 32% Done

11 May 2020 16:15:21,373 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:21,373 INFO : Inserting HSPB1

11 May 2020 16:15:21,378 INFO : 33% Done

11 May 2020 16:15:21,587 INFO : 34% Done

11 May 2020 16:15:21,790 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:21,791 INFO : Inserting HXC6

11 May 2020 16:15:21,795 INFO : 35% Done

11 May 2020 16:15:22,001 INFO : 36% Done

11 May 2020 16:15:22,205 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:22,205 INFO : Inserting KLK11

11 May 2020 16:15:22,209 INFO : 37% Done

11 May 2020 16:15:22,622 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:22,623 INFO : Inserting KLK2

11 May 2020 16:15:22,627 INFO : 38% Done

11 May 2020 16:15:22,863 INFO : 39% Done

11 May 2020 16:15:23,096 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:23,097 INFO : Inserting MMP2

11 May 2020 16:15:23,101 INFO : 40% Done

11 May 2020 16:15:23,335 INFO : 41% Done

11 May 2020 16:15:23,521 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:23,521 INFO : Inserting MMP9

11 May 2020 16:15:23,525 INFO : 42% Done

11 May 2020 16:15:23,761 INFO : 43% Done

11 May 2020 16:15:23,992 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:23,993 INFO : Inserting MUC1

11 May 2020 16:15:23,997 INFO : 44% Done

11 May 2020 16:15:24,231 INFO : 45% Done

11 May 2020 16:15:24,463 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:24,463 INFO : Inserting MUC6

11 May 2020 16:15:24,703 INFO : 46% Done

11 May 2020 16:15:24,907 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:24,908 INFO : Inserting MYC

11 May 2020 16:15:24,912 INFO : 47% Done

11 May 2020 16:15:25,118 INFO : 48% Done

11 May 2020 16:15:25,319 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:25,319 INFO : Inserting MYCN

11 May 2020 16:15:25,323 INFO : 49% Done

11 May 2020 16:15:25,526 INFO : 50% Done

11 May 2020 16:15:25,735 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:25,735 INFO : Inserting MYO6

11 May 2020 16:15:25,739 INFO : 51% Done

11 May 2020 16:15:25,948 INFO : 52% Done

11 May 2020 16:15:26,149 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:26,149 INFO : Inserting NCOA2

11 May 2020 16:15:26,154 INFO : 53% Done

11 May 2020 16:15:26,355 INFO : 54% Done

11 May 2020 16:15:26,580 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:26,580 INFO : Inserting NPY

11 May 2020 16:15:26,585 INFO : 55% Done

11 May 2020 16:15:26,789 INFO : 56% Done

11 May 2020 16:15:26,990 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:26,991 INFO : Inserting O51E2

11 May 2020 16:15:27,159 INFO : 57% Done

11 May 2020 16:15:27,360 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:27,360 INFO : Inserting OSTP

11 May 2020 16:15:27,364 INFO : 58% Done

11 May 2020 16:15:27,610 INFO : 59% Done

11 May 2020 16:15:27,830 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:27,830 INFO : Inserting P53

11 May 2020 16:15:27,835 INFO : 60% Done

11 May 2020 16:15:28,067 INFO : 61% Done

11 May 2020 16:15:28,296 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:28,296 INFO : Inserting PAFA

11 May 2020 16:15:28,300 INFO : 62% Done

11 May 2020 16:15:28,535 INFO : 63% Done

11 May 2020 16:15:28,764 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:28,764 INFO : Inserting PGFRB

11 May 2020 16:15:28,969 INFO : 64% Done

11 May 2020 16:15:29,183 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:29,183 INFO : Inserting PK3CA

11 May 2020 16:15:29,187 INFO : 65% Done

11 May 2020 16:15:29,435 INFO : 66% Done

11 May 2020 16:15:29,637 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:29,637 INFO : Inserting RAF1

11 May 2020 16:15:29,641 INFO : 67% Done

11 May 2020 16:15:29,846 INFO : 68% Done

11 May 2020 16:15:30,006 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:30,006 INFO : Inserting SERPINI1

11 May 2020 16:15:30,011 INFO : 69% Done

11 May 2020 16:15:30,213 INFO : 70% Done

11 May 2020 16:15:30,412 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:30,413 INFO : Inserting SPINK1

11 May 2020 16:15:30,417 INFO : 71% Done

11 May 2020 16:15:30,626 INFO : 72% Done

11 May 2020 16:15:30,826 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:30,826 INFO : Inserting SPRC

11 May 2020 16:15:31,033 INFO : 73% Done

11 May 2020 16:15:31,237 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:31,238 INFO : Inserting TGFB1

11 May 2020 16:15:31,242 INFO : 74% Done

11 May 2020 16:15:31,662 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:31,662 INFO : Inserting TMPS2

11 May 2020 16:15:31,666 INFO : 75% Done

11 May 2020 16:15:31,899 INFO : 76% Done

11 May 2020 16:15:32,129 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:32,129 INFO : Inserting TPM2

11 May 2020 16:15:32,134 INFO : 77% Done

11 May 2020 16:15:32,365 INFO : 78% Done

11 May 2020 16:15:32,595 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:32,595 INFO : Inserting TWST1

11 May 2020 16:15:32,599 INFO : 79% Done

11 May 2020 16:15:32,831 INFO : 80% Done

11 May 2020 16:15:33,060 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:33,060 INFO : Inserting VEGFA

11 May 2020 16:15:33,064 INFO : 81% Done

11 May 2020 16:15:33,296 INFO : 82% Done

11 May 2020 16:15:33,525 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:33,525 INFO : Inserting PSA

11 May 2020 16:15:33,530 INFO : 83% Done

11 May 2020 16:15:33,992 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:33,992 INFO : Inserting ERG_pan

11 May 2020 16:15:33,997 INFO : 84% Done

11 May 2020 16:15:34,229 INFO : 85% Done

11 May 2020 16:15:34,462 INFO : 86% Done

11 May 2020 16:15:34,684 INFO : 87% Done

11 May 2020 16:15:34,898 INFO : 88% Done

11 May 2020 16:15:35,113 INFO : 89% Done

11 May 2020 16:15:35,333 INFO : 90% Done

11 May 2020 16:15:35,533 DEBUG: Total peptides inserted: 7

11 May 2020 16:15:35,533 INFO : Inserting ETV1

11 May 2020 16:15:35,538 INFO : 91% Done

11 May 2020 16:15:35,752 INFO : 92% Done

11 May 2020 16:15:35,985 INFO : 93% Done

11 May 2020 16:15:36,214 DEBUG: Total peptides inserted: 3

11 May 2020 16:15:36,214 INFO : Inserting ERG8

11 May 2020 16:15:36,219 INFO : 94% Done

11 May 2020 16:15:36,452 INFO : 95% Done

11 May 2020 16:15:36,681 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:36,681 INFO : Inserting SMAD4

11 May 2020 16:15:36,685 INFO : 96% Done

11 May 2020 16:15:37,105 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:37,105 INFO : Inserting STAT3

11 May 2020 16:15:37,109 INFO : 97% Done

11 May 2020 16:15:37,340 INFO : 98% Done

11 May 2020 16:15:37,571 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:37,571 INFO : Done parsing Skyline document.

11 May 2020 16:15:37,573 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:15:37,722 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:15:38,568 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:15:38,753 INFO : Cleaning up temp tables

11 May 2020 16:15:39,163 INFO : Completed import of Skyline document from CPDR-FFPE-ID-324_2020-01-28_11-04-12.sky.zip

11 May 2020 16:15:39,164 INFO : 100% Done

11 May 2020 16:15:39,185 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80184/CPDR-FFPE-ID-324_2020-01-28_11-04-12.sky.zip into the system

11 May 2020 16:15:39,185 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80169/CPDR-FFPE-ID-341_2020-01-28_10-53-36/CPDR-FFPE-ID-341.skyd into the system

11 May 2020 16:15:39,186 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80169/CPDR-FFPE-ID-341_2020-01-28_10-53-36/CPDR-FFPE-ID-341.skyd into the system

11 May 2020 16:15:39,186 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80169/CPDR-FFPE-ID-341_2020-01-28_10-53-36.sky.zip into the system

11 May 2020 16:15:39,189 INFO : Starting import from CPDR-FFPE-ID-341_2020-01-28_10-53-36.sky.zip

11 May 2020 16:15:39,192 INFO : Starting to import Skyline document from CPDR-FFPE-ID-341_2020-01-28_10-53-36.sky.zip

11 May 2020 16:15:39,201 INFO : Expanding CPDR-FFPE-ID-341.skyd

11 May 2020 16:15:39,412 INFO : Expanding CPDR-FFPE-ID-341.sky.view

11 May 2020 16:15:39,412 INFO : Expanding CPDR-FFPE-ID-341.sky

11 May 2020 16:15:39,978 INFO : Inserting TFF3

11 May 2020 16:15:39,987 INFO : 1% Done

11 May 2020 16:15:40,230 INFO : 2% Done

11 May 2020 16:15:40,461 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:40,461 INFO : Inserting AKT1

11 May 2020 16:15:40,465 INFO : 3% Done

11 May 2020 16:15:40,655 INFO : 4% Done

11 May 2020 16:15:40,884 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:40,884 INFO : Inserting AMACR

11 May 2020 16:15:40,888 INFO : 5% Done

11 May 2020 16:15:41,120 INFO : 6% Done

11 May 2020 16:15:41,349 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:41,349 INFO : Inserting ANDR

11 May 2020 16:15:41,353 INFO : 7% Done

11 May 2020 16:15:41,586 INFO : 8% Done

11 May 2020 16:15:41,815 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:41,815 INFO : Inserting ANXA2

11 May 2020 16:15:42,055 INFO : 9% Done

11 May 2020 16:15:42,284 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:42,285 INFO : Inserting AURKA

11 May 2020 16:15:42,289 INFO : 10% Done

11 May 2020 16:15:42,523 INFO : 11% Done

11 May 2020 16:15:42,752 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:42,753 INFO : Inserting BRAF

11 May 2020 16:15:42,757 INFO : 12% Done

11 May 2020 16:15:42,989 INFO : 13% Done

11 May 2020 16:15:43,220 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:43,220 INFO : Inserting CAMKK2

11 May 2020 16:15:43,224 INFO : 14% Done

11 May 2020 16:15:43,459 INFO : 15% Done

11 May 2020 16:15:43,687 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:43,687 INFO : Inserting CCND1

11 May 2020 16:15:43,691 INFO : 16% Done

11 May 2020 16:15:43,924 INFO : 17% Done

11 May 2020 16:15:44,109 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:44,110 INFO : Inserting CDN1A

11 May 2020 16:15:44,352 INFO : 18% Done

11 May 2020 16:15:44,582 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:44,582 INFO : Inserting CRISP3

11 May 2020 16:15:44,586 INFO : 19% Done

11 May 2020 16:15:44,818 INFO : 20% Done

11 May 2020 16:15:45,048 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:45,048 INFO : Inserting DCOR

11 May 2020 16:15:45,052 INFO : 21% Done

11 May 2020 16:15:45,283 INFO : 22% Done

11 May 2020 16:15:45,514 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:45,514 INFO : Inserting EGFR

11 May 2020 16:15:45,518 INFO : 23% Done

11 May 2020 16:15:45,748 INFO : 24% Done

11 May 2020 16:15:45,933 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:45,933 INFO : Inserting EZH2

11 May 2020 16:15:45,937 INFO : 25% Done

11 May 2020 16:15:46,406 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:46,406 INFO : Inserting FGFR1

11 May 2020 16:15:46,410 INFO : 26% Done

11 May 2020 16:15:46,874 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:46,874 INFO : Inserting FOLH1

11 May 2020 16:15:46,878 INFO : 27% Done

11 May 2020 16:15:47,112 INFO : 28% Done

11 May 2020 16:15:47,342 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:47,342 INFO : Inserting HIF1A

11 May 2020 16:15:47,346 INFO : 29% Done

11 May 2020 16:15:47,577 INFO : 30% Done

11 May 2020 16:15:47,823 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:47,823 INFO : Inserting HPN

11 May 2020 16:15:47,827 INFO : 31% Done

11 May 2020 16:15:48,074 INFO : 32% Done

11 May 2020 16:15:48,307 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:48,307 INFO : Inserting HSPB1

11 May 2020 16:15:48,311 INFO : 33% Done

11 May 2020 16:15:48,546 INFO : 34% Done

11 May 2020 16:15:48,779 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:48,779 INFO : Inserting HXC6

11 May 2020 16:15:48,783 INFO : 35% Done

11 May 2020 16:15:49,017 INFO : 36% Done

11 May 2020 16:15:49,249 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:49,249 INFO : Inserting KLK11

11 May 2020 16:15:49,254 INFO : 37% Done

11 May 2020 16:15:49,716 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:49,716 INFO : Inserting KLK2

11 May 2020 16:15:49,720 INFO : 38% Done

11 May 2020 16:15:49,952 INFO : 39% Done

11 May 2020 16:15:50,165 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:50,165 INFO : Inserting MMP2

11 May 2020 16:15:50,170 INFO : 40% Done

11 May 2020 16:15:50,409 INFO : 41% Done

11 May 2020 16:15:50,592 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:50,592 INFO : Inserting MMP9

11 May 2020 16:15:50,597 INFO : 42% Done

11 May 2020 16:15:50,829 INFO : 43% Done

11 May 2020 16:15:51,077 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:51,077 INFO : Inserting MUC1

11 May 2020 16:15:51,082 INFO : 44% Done

11 May 2020 16:15:51,285 INFO : 45% Done

11 May 2020 16:15:51,487 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:51,487 INFO : Inserting MUC6

11 May 2020 16:15:51,491 INFO : 46% Done

11 May 2020 16:15:51,899 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:51,899 INFO : Inserting MYC

11 May 2020 16:15:51,904 INFO : 47% Done

11 May 2020 16:15:52,108 INFO : 48% Done

11 May 2020 16:15:52,310 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:52,310 INFO : Inserting MYCN

11 May 2020 16:15:52,315 INFO : 49% Done

11 May 2020 16:15:52,522 INFO : 50% Done

11 May 2020 16:15:52,727 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:52,727 INFO : Inserting MYO6

11 May 2020 16:15:52,731 INFO : 51% Done

11 May 2020 16:15:52,940 INFO : 52% Done

11 May 2020 16:15:53,144 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:53,144 INFO : Inserting NCOA2

11 May 2020 16:15:53,148 INFO : 53% Done

11 May 2020 16:15:53,356 INFO : 54% Done

11 May 2020 16:15:53,562 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:53,562 INFO : Inserting NPY

11 May 2020 16:15:53,567 INFO : 55% Done

11 May 2020 16:15:53,776 INFO : 56% Done

11 May 2020 16:15:53,976 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:53,976 INFO : Inserting O51E2

11 May 2020 16:15:54,144 INFO : 57% Done

11 May 2020 16:15:54,353 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:54,354 INFO : Inserting OSTP

11 May 2020 16:15:54,358 INFO : 58% Done

11 May 2020 16:15:54,564 INFO : 59% Done

11 May 2020 16:15:54,772 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:54,772 INFO : Inserting P53

11 May 2020 16:15:54,776 INFO : 60% Done

11 May 2020 16:15:54,984 INFO : 61% Done

11 May 2020 16:15:55,187 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:55,187 INFO : Inserting PAFA

11 May 2020 16:15:55,191 INFO : 62% Done

11 May 2020 16:15:55,399 INFO : 63% Done

11 May 2020 16:15:55,605 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:55,605 INFO : Inserting PGFRB

11 May 2020 16:15:55,778 INFO : 64% Done

11 May 2020 16:15:55,981 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:55,982 INFO : Inserting PK3CA

11 May 2020 16:15:55,986 INFO : 65% Done

11 May 2020 16:15:56,193 INFO : 66% Done

11 May 2020 16:15:56,397 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:56,397 INFO : Inserting RAF1

11 May 2020 16:15:56,401 INFO : 67% Done

11 May 2020 16:15:56,681 INFO : 68% Done

11 May 2020 16:15:56,841 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:56,841 INFO : Inserting SERPINI1

11 May 2020 16:15:56,846 INFO : 69% Done

11 May 2020 16:15:57,052 INFO : 70% Done

11 May 2020 16:15:57,252 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:57,252 INFO : Inserting SPINK1

11 May 2020 16:15:57,256 INFO : 71% Done

11 May 2020 16:15:57,463 INFO : 72% Done

11 May 2020 16:15:57,671 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:57,671 INFO : Inserting SPRC

11 May 2020 16:15:57,887 INFO : 73% Done

11 May 2020 16:15:58,098 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:58,098 INFO : Inserting TGFB1

11 May 2020 16:15:58,105 INFO : 74% Done

11 May 2020 16:15:58,571 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:58,572 INFO : Inserting TMPS2

11 May 2020 16:15:58,576 INFO : 75% Done

11 May 2020 16:15:58,812 INFO : 76% Done

11 May 2020 16:15:59,044 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:59,044 INFO : Inserting TPM2

11 May 2020 16:15:59,048 INFO : 77% Done

11 May 2020 16:15:59,287 INFO : 78% Done

11 May 2020 16:15:59,518 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:59,518 INFO : Inserting TWST1

11 May 2020 16:15:59,522 INFO : 79% Done

11 May 2020 16:15:59,757 INFO : 80% Done

11 May 2020 16:15:59,990 DEBUG: Total peptides inserted: 2

11 May 2020 16:15:59,990 INFO : Inserting VEGFA

11 May 2020 16:15:59,994 INFO : 81% Done

11 May 2020 16:16:00,228 INFO : 82% Done

11 May 2020 16:16:00,460 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:00,460 INFO : Inserting PSA

11 May 2020 16:16:00,465 INFO : 83% Done

11 May 2020 16:16:00,703 INFO : 84% Done

11 May 2020 16:16:00,935 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:00,935 INFO : Inserting ERG_pan

11 May 2020 16:16:01,174 INFO : 85% Done

11 May 2020 16:16:01,413 INFO : 86% Done

11 May 2020 16:16:01,653 INFO : 87% Done

11 May 2020 16:16:01,888 INFO : 88% Done

11 May 2020 16:16:02,122 INFO : 89% Done

11 May 2020 16:16:02,357 INFO : 90% Done

11 May 2020 16:16:02,589 DEBUG: Total peptides inserted: 7

11 May 2020 16:16:02,589 INFO : Inserting ETV1

11 May 2020 16:16:02,594 INFO : 91% Done

11 May 2020 16:16:02,852 INFO : 92% Done

11 May 2020 16:16:03,086 INFO : 93% Done

11 May 2020 16:16:03,317 DEBUG: Total peptides inserted: 3

11 May 2020 16:16:03,317 INFO : Inserting ERG8

11 May 2020 16:16:03,322 INFO : 94% Done

11 May 2020 16:16:03,558 INFO : 95% Done

11 May 2020 16:16:03,790 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:03,790 INFO : Inserting SMAD4

11 May 2020 16:16:04,000 INFO : 96% Done

11 May 2020 16:16:04,161 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:04,161 INFO : Inserting STAT3

11 May 2020 16:16:04,166 INFO : 97% Done

11 May 2020 16:16:04,377 INFO : 98% Done

11 May 2020 16:16:04,595 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:04,595 INFO : Done parsing Skyline document.

11 May 2020 16:16:04,597 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:16:04,747 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:16:05,431 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:16:05,876 INFO : Cleaning up temp tables

11 May 2020 16:16:05,888 INFO : Completed import of Skyline document from CPDR-FFPE-ID-341_2020-01-28_10-53-36.sky.zip

11 May 2020 16:16:05,889 INFO : 100% Done

11 May 2020 16:16:05,901 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80169/CPDR-FFPE-ID-341_2020-01-28_10-53-36.sky.zip into the system

11 May 2020 16:16:05,902 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80152/CPDR-FFPE-ID-254_2020-01-28_10-42-25/CPDR-FFPE-ID-254.skyd into the system

11 May 2020 16:16:05,903 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80152/CPDR-FFPE-ID-254_2020-01-28_10-42-25/CPDR-FFPE-ID-254.skyd into the system

11 May 2020 16:16:05,903 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80152/CPDR-FFPE-ID-254_2020-01-28_10-42-25.sky.zip into the system

11 May 2020 16:16:05,908 INFO : Starting import from CPDR-FFPE-ID-254_2020-01-28_10-42-25.sky.zip

11 May 2020 16:16:05,915 INFO : Starting to import Skyline document from CPDR-FFPE-ID-254_2020-01-28_10-42-25.sky.zip

11 May 2020 16:16:05,931 INFO : Expanding CPDR-FFPE-ID-254.skyd

11 May 2020 16:16:06,367 INFO : Expanding CPDR-FFPE-ID-254.sky.view

11 May 2020 16:16:06,368 INFO : Expanding CPDR-FFPE-ID-254.sky

11 May 2020 16:16:06,822 INFO : Inserting TFF3

11 May 2020 16:16:06,829 INFO : 1% Done

11 May 2020 16:16:07,272 INFO : 2% Done

11 May 2020 16:16:07,473 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:07,473 INFO : Inserting AKT1

11 May 2020 16:16:07,477 INFO : 3% Done

11 May 2020 16:16:07,640 INFO : 4% Done

11 May 2020 16:16:07,842 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:07,842 INFO : Inserting AMACR

11 May 2020 16:16:07,846 INFO : 5% Done

11 May 2020 16:16:08,081 INFO : 6% Done

11 May 2020 16:16:08,326 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:08,326 INFO : Inserting ANDR

11 May 2020 16:16:08,330 INFO : 7% Done

11 May 2020 16:16:08,779 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:08,779 INFO : Inserting ANXA2

11 May 2020 16:16:08,783 INFO : 8% Done

11 May 2020 16:16:08,990 INFO : 9% Done

11 May 2020 16:16:09,191 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:09,191 INFO : Inserting AURKA

11 May 2020 16:16:09,195 INFO : 10% Done

11 May 2020 16:16:09,400 INFO : 11% Done

11 May 2020 16:16:09,725 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:09,725 INFO : Inserting BRAF

11 May 2020 16:16:09,729 INFO : 12% Done

11 May 2020 16:16:09,955 INFO : 13% Done

11 May 2020 16:16:10,191 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:10,192 INFO : Inserting CAMKK2

11 May 2020 16:16:10,196 INFO : 14% Done

11 May 2020 16:16:10,446 INFO : 15% Done

11 May 2020 16:16:10,706 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:10,707 INFO : Inserting CCND1

11 May 2020 16:16:10,714 INFO : 16% Done

11 May 2020 16:16:11,004 INFO : 17% Done

11 May 2020 16:16:11,194 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:11,194 INFO : Inserting CDN1A

11 May 2020 16:16:11,440 INFO : 18% Done

11 May 2020 16:16:11,678 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:11,678 INFO : Inserting CRISP3

11 May 2020 16:16:11,682 INFO : 19% Done

11 May 2020 16:16:11,916 INFO : 20% Done

11 May 2020 16:16:12,115 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:12,115 INFO : Inserting DCOR

11 May 2020 16:16:12,119 INFO : 21% Done

11 May 2020 16:16:12,335 INFO : 22% Done

11 May 2020 16:16:12,556 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:12,556 INFO : Inserting EGFR

11 May 2020 16:16:12,561 INFO : 23% Done

11 May 2020 16:16:12,784 INFO : 24% Done

11 May 2020 16:16:12,947 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:12,947 INFO : Inserting EZH2

11 May 2020 16:16:12,951 INFO : 25% Done

11 May 2020 16:16:13,353 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:13,353 INFO : Inserting FGFR1

11 May 2020 16:16:13,562 INFO : 26% Done

11 May 2020 16:16:13,773 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:13,773 INFO : Inserting FOLH1

11 May 2020 16:16:13,777 INFO : 27% Done

11 May 2020 16:16:14,015 INFO : 28% Done

11 May 2020 16:16:14,217 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:14,217 INFO : Inserting HIF1A

11 May 2020 16:16:14,221 INFO : 29% Done

11 May 2020 16:16:14,464 INFO : 30% Done

11 May 2020 16:16:14,676 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:14,677 INFO : Inserting HPN

11 May 2020 16:16:14,681 INFO : 31% Done

11 May 2020 16:16:14,892 INFO : 32% Done

11 May 2020 16:16:15,123 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:15,123 INFO : Inserting HSPB1

11 May 2020 16:16:15,128 INFO : 33% Done

11 May 2020 16:16:15,361 INFO : 34% Done

11 May 2020 16:16:15,595 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:15,595 INFO : Inserting HXC6

11 May 2020 16:16:15,599 INFO : 35% Done

11 May 2020 16:16:15,832 INFO : 36% Done

11 May 2020 16:16:16,081 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:16,081 INFO : Inserting KLK11

11 May 2020 16:16:16,319 INFO : 37% Done

11 May 2020 16:16:16,569 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:16,570 INFO : Inserting KLK2

11 May 2020 16:16:16,574 INFO : 38% Done

11 May 2020 16:16:16,809 INFO : 39% Done

11 May 2020 16:16:17,045 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:17,046 INFO : Inserting MMP2

11 May 2020 16:16:17,050 INFO : 40% Done

11 May 2020 16:16:17,283 INFO : 41% Done

11 May 2020 16:16:17,473 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:17,473 INFO : Inserting MMP9

11 May 2020 16:16:17,477 INFO : 42% Done

11 May 2020 16:16:17,710 INFO : 43% Done

11 May 2020 16:16:17,940 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:17,940 INFO : Inserting MUC1

11 May 2020 16:16:17,945 INFO : 44% Done

11 May 2020 16:16:18,178 INFO : 45% Done

11 May 2020 16:16:18,408 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:18,408 INFO : Inserting MUC6

11 May 2020 16:16:18,684 INFO : 46% Done

11 May 2020 16:16:18,904 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:18,904 INFO : Inserting MYC

11 May 2020 16:16:18,908 INFO : 47% Done

11 May 2020 16:16:19,115 INFO : 48% Done

11 May 2020 16:16:19,317 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:19,317 INFO : Inserting MYCN

11 May 2020 16:16:19,321 INFO : 49% Done

11 May 2020 16:16:19,529 INFO : 50% Done

11 May 2020 16:16:19,733 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:19,733 INFO : Inserting MYO6

11 May 2020 16:16:19,737 INFO : 51% Done

11 May 2020 16:16:19,945 INFO : 52% Done

11 May 2020 16:16:20,145 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:20,145 INFO : Inserting NCOA2

11 May 2020 16:16:20,149 INFO : 53% Done

11 May 2020 16:16:20,397 INFO : 54% Done

11 May 2020 16:16:20,623 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:20,623 INFO : Inserting NPY

11 May 2020 16:16:20,627 INFO : 55% Done

11 May 2020 16:16:20,843 INFO : 56% Done

11 May 2020 16:16:21,051 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:21,051 INFO : Inserting O51E2

11 May 2020 16:16:21,221 INFO : 57% Done

11 May 2020 16:16:21,426 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:21,426 INFO : Inserting OSTP

11 May 2020 16:16:21,430 INFO : 58% Done

11 May 2020 16:16:21,635 INFO : 59% Done

11 May 2020 16:16:21,843 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:21,843 INFO : Inserting P53

11 May 2020 16:16:21,847 INFO : 60% Done

11 May 2020 16:16:22,064 INFO : 61% Done

11 May 2020 16:16:22,310 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:22,311 INFO : Inserting PAFA

11 May 2020 16:16:22,315 INFO : 62% Done

11 May 2020 16:16:22,539 INFO : 63% Done

11 May 2020 16:16:22,779 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:22,779 INFO : Inserting PGFRB

11 May 2020 16:16:23,017 INFO : 64% Done

11 May 2020 16:16:23,219 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:23,219 INFO : Inserting PK3CA

11 May 2020 16:16:23,223 INFO : 65% Done

11 May 2020 16:16:23,431 INFO : 66% Done

11 May 2020 16:16:23,635 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:23,635 INFO : Inserting RAF1

11 May 2020 16:16:23,639 INFO : 67% Done

11 May 2020 16:16:23,862 INFO : 68% Done

11 May 2020 16:16:24,033 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:24,033 INFO : Inserting SERPINI1

11 May 2020 16:16:24,037 INFO : 69% Done

11 May 2020 16:16:24,243 INFO : 70% Done

11 May 2020 16:16:24,444 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:24,444 INFO : Inserting SPINK1

11 May 2020 16:16:24,448 INFO : 71% Done

11 May 2020 16:16:24,690 INFO : 72% Done

11 May 2020 16:16:24,902 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:24,902 INFO : Inserting SPRC

11 May 2020 16:16:25,127 INFO : 73% Done

11 May 2020 16:16:25,379 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:25,379 INFO : Inserting TGFB1

11 May 2020 16:16:25,383 INFO : 74% Done

11 May 2020 16:16:25,787 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:25,787 INFO : Inserting TMPS2

11 May 2020 16:16:25,791 INFO : 75% Done

11 May 2020 16:16:25,996 INFO : 76% Done

11 May 2020 16:16:26,199 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:26,199 INFO : Inserting TPM2

11 May 2020 16:16:26,203 INFO : 77% Done

11 May 2020 16:16:26,414 INFO : 78% Done

11 May 2020 16:16:26,613 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:26,613 INFO : Inserting TWST1

11 May 2020 16:16:26,617 INFO : 79% Done

11 May 2020 16:16:26,830 INFO : 80% Done

11 May 2020 16:16:27,034 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:27,034 INFO : Inserting VEGFA

11 May 2020 16:16:27,038 INFO : 81% Done

11 May 2020 16:16:27,243 INFO : 82% Done

11 May 2020 16:16:27,445 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:27,445 INFO : Inserting PSA

11 May 2020 16:16:27,449 INFO : 83% Done

11 May 2020 16:16:27,855 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:27,856 INFO : Inserting ERG_pan

11 May 2020 16:16:27,860 INFO : 84% Done

11 May 2020 16:16:28,064 INFO : 85% Done

11 May 2020 16:16:28,314 INFO : 86% Done

11 May 2020 16:16:28,523 INFO : 87% Done

11 May 2020 16:16:28,733 INFO : 88% Done

11 May 2020 16:16:28,940 INFO : 89% Done

11 May 2020 16:16:29,147 INFO : 90% Done

11 May 2020 16:16:29,347 DEBUG: Total peptides inserted: 7

11 May 2020 16:16:29,348 INFO : Inserting ETV1

11 May 2020 16:16:29,352 INFO : 91% Done

11 May 2020 16:16:29,559 INFO : 92% Done

11 May 2020 16:16:29,766 INFO : 93% Done

11 May 2020 16:16:29,981 DEBUG: Total peptides inserted: 3

11 May 2020 16:16:29,982 INFO : Inserting ERG8

11 May 2020 16:16:29,986 INFO : 94% Done

11 May 2020 16:16:30,192 INFO : 95% Done

11 May 2020 16:16:30,393 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:30,393 INFO : Inserting SMAD4

11 May 2020 16:16:30,626 INFO : 96% Done

11 May 2020 16:16:30,793 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:30,793 INFO : Inserting STAT3

11 May 2020 16:16:30,797 INFO : 97% Done

11 May 2020 16:16:31,003 INFO : 98% Done

11 May 2020 16:16:31,204 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:31,204 INFO : Done parsing Skyline document.

11 May 2020 16:16:31,206 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:16:31,355 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:16:32,147 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:16:32,386 INFO : Cleaning up temp tables

11 May 2020 16:16:32,749 INFO : Completed import of Skyline document from CPDR-FFPE-ID-254_2020-01-28_10-42-25.sky.zip

11 May 2020 16:16:32,750 INFO : 100% Done

11 May 2020 16:16:32,757 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80152/CPDR-FFPE-ID-254_2020-01-28_10-42-25.sky.zip into the system

11 May 2020 16:16:32,757 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80150/CPDR-FFPE-ID-249_2020-01-28_10-41-10/CPDR-FFPE-ID-249.skyd into the system

11 May 2020 16:16:32,758 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80150/CPDR-FFPE-ID-249_2020-01-28_10-41-10/CPDR-FFPE-ID-249.skyd into the system

11 May 2020 16:16:32,758 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80150/CPDR-FFPE-ID-249_2020-01-28_10-41-10.sky.zip into the system

11 May 2020 16:16:32,761 INFO : Starting import from CPDR-FFPE-ID-249_2020-01-28_10-41-10.sky.zip

11 May 2020 16:16:32,764 INFO : Starting to import Skyline document from CPDR-FFPE-ID-249_2020-01-28_10-41-10.sky.zip

11 May 2020 16:16:32,773 INFO : Expanding CPDR-FFPE-ID-249.skyd

11 May 2020 16:16:32,952 INFO : Expanding CPDR-FFPE-ID-249.sky.view

11 May 2020 16:16:32,953 INFO : Expanding CPDR-FFPE-ID-249.sky

11 May 2020 16:16:33,585 INFO : Inserting TFF3

11 May 2020 16:16:33,594 INFO : 1% Done

11 May 2020 16:16:33,804 INFO : 2% Done

11 May 2020 16:16:34,009 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:34,009 INFO : Inserting AKT1

11 May 2020 16:16:34,013 INFO : 3% Done

11 May 2020 16:16:34,181 INFO : 4% Done

11 May 2020 16:16:34,379 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:34,379 INFO : Inserting AMACR

11 May 2020 16:16:34,384 INFO : 5% Done

11 May 2020 16:16:34,585 INFO : 6% Done

11 May 2020 16:16:34,833 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:34,834 INFO : Inserting ANDR

11 May 2020 16:16:34,838 INFO : 7% Done

11 May 2020 16:16:35,380 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:35,380 INFO : 8% Done

11 May 2020 16:16:35,380 INFO : Inserting ANXA2

11 May 2020 16:16:35,595 INFO : 9% Done

11 May 2020 16:16:35,815 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:35,815 INFO : Inserting AURKA

11 May 2020 16:16:35,820 INFO : 10% Done

11 May 2020 16:16:36,036 INFO : 11% Done

11 May 2020 16:16:36,238 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:36,239 INFO : Inserting BRAF

11 May 2020 16:16:36,243 INFO : 12% Done

11 May 2020 16:16:36,453 INFO : 13% Done

11 May 2020 16:16:36,710 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:36,710 INFO : Inserting CAMKK2

11 May 2020 16:16:36,714 INFO : 14% Done

11 May 2020 16:16:36,924 INFO : 15% Done

11 May 2020 16:16:37,122 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:37,122 INFO : Inserting CCND1

11 May 2020 16:16:37,127 INFO : 16% Done

11 May 2020 16:16:37,327 INFO : 17% Done

11 May 2020 16:16:37,486 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:37,486 INFO : Inserting CDN1A

11 May 2020 16:16:37,718 INFO : 18% Done

11 May 2020 16:16:37,923 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:37,923 INFO : Inserting CRISP3

11 May 2020 16:16:37,927 INFO : 19% Done

11 May 2020 16:16:38,139 INFO : 20% Done

11 May 2020 16:16:38,351 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:38,351 INFO : Inserting DCOR

11 May 2020 16:16:38,355 INFO : 21% Done

11 May 2020 16:16:38,561 INFO : 22% Done

11 May 2020 16:16:38,761 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:38,762 INFO : Inserting EGFR

11 May 2020 16:16:38,766 INFO : 23% Done

11 May 2020 16:16:38,966 INFO : 24% Done

11 May 2020 16:16:39,126 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:39,126 INFO : Inserting EZH2

11 May 2020 16:16:39,130 INFO : 25% Done

11 May 2020 16:16:39,569 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:39,569 INFO : Inserting FGFR1

11 May 2020 16:16:39,821 INFO : 26% Done

11 May 2020 16:16:40,050 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:40,051 INFO : Inserting FOLH1

11 May 2020 16:16:40,055 INFO : 27% Done

11 May 2020 16:16:40,285 INFO : 28% Done

11 May 2020 16:16:40,512 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:40,512 INFO : Inserting HIF1A

11 May 2020 16:16:40,516 INFO : 29% Done

11 May 2020 16:16:40,755 INFO : 30% Done

11 May 2020 16:16:40,983 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:40,983 INFO : Inserting HPN

11 May 2020 16:16:40,987 INFO : 31% Done

11 May 2020 16:16:41,217 INFO : 32% Done

11 May 2020 16:16:41,445 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:41,445 INFO : Inserting HSPB1

11 May 2020 16:16:41,449 INFO : 33% Done

11 May 2020 16:16:41,675 INFO : 34% Done

11 May 2020 16:16:41,896 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:41,896 INFO : Inserting HXC6

11 May 2020 16:16:41,901 INFO : 35% Done

11 May 2020 16:16:42,132 INFO : 36% Done

11 May 2020 16:16:42,359 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:42,359 INFO : Inserting KLK11

11 May 2020 16:16:42,594 INFO : 37% Done

11 May 2020 16:16:42,822 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:42,822 INFO : Inserting KLK2

11 May 2020 16:16:42,827 INFO : 38% Done

11 May 2020 16:16:43,060 INFO : 39% Done

11 May 2020 16:16:43,289 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:43,289 INFO : Inserting MMP2

11 May 2020 16:16:43,293 INFO : 40% Done

11 May 2020 16:16:43,523 INFO : 41% Done

11 May 2020 16:16:43,703 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:43,703 INFO : Inserting MMP9

11 May 2020 16:16:43,707 INFO : 42% Done

11 May 2020 16:16:43,938 INFO : 43% Done

11 May 2020 16:16:44,167 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:44,167 INFO : Inserting MUC1

11 May 2020 16:16:44,171 INFO : 44% Done

11 May 2020 16:16:44,401 INFO : 45% Done

11 May 2020 16:16:44,628 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:44,628 INFO : Inserting MUC6

11 May 2020 16:16:44,863 INFO : 46% Done

11 May 2020 16:16:45,088 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:45,088 INFO : Inserting MYC

11 May 2020 16:16:45,093 INFO : 47% Done

11 May 2020 16:16:45,322 INFO : 48% Done

11 May 2020 16:16:45,549 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:45,550 INFO : Inserting MYCN

11 May 2020 16:16:45,554 INFO : 49% Done

11 May 2020 16:16:45,783 INFO : 50% Done

11 May 2020 16:16:46,010 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:46,011 INFO : Inserting MYO6

11 May 2020 16:16:46,015 INFO : 51% Done

11 May 2020 16:16:46,245 INFO : 52% Done

11 May 2020 16:16:46,473 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:46,473 INFO : Inserting NCOA2

11 May 2020 16:16:46,477 INFO : 53% Done

11 May 2020 16:16:46,709 INFO : 54% Done

11 May 2020 16:16:46,921 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:46,921 INFO : Inserting NPY

11 May 2020 16:16:46,925 INFO : 55% Done

11 May 2020 16:16:47,128 INFO : 56% Done

11 May 2020 16:16:47,326 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:47,326 INFO : Inserting O51E2

11 May 2020 16:16:47,491 INFO : 57% Done

11 May 2020 16:16:47,692 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:47,692 INFO : Inserting OSTP

11 May 2020 16:16:47,696 INFO : 58% Done

11 May 2020 16:16:47,908 INFO : 59% Done

11 May 2020 16:16:48,137 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:48,137 INFO : Inserting P53

11 May 2020 16:16:48,142 INFO : 60% Done

11 May 2020 16:16:48,374 INFO : 61% Done

11 May 2020 16:16:48,602 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:48,603 INFO : Inserting PAFA

11 May 2020 16:16:48,607 INFO : 62% Done

11 May 2020 16:16:48,838 INFO : 63% Done

11 May 2020 16:16:49,065 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:49,065 INFO : Inserting PGFRB

11 May 2020 16:16:49,254 INFO : 64% Done

11 May 2020 16:16:49,481 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:49,481 INFO : Inserting PK3CA

11 May 2020 16:16:49,485 INFO : 65% Done

11 May 2020 16:16:49,715 INFO : 66% Done

11 May 2020 16:16:49,943 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:49,943 INFO : Inserting RAF1

11 May 2020 16:16:49,947 INFO : 67% Done

11 May 2020 16:16:50,178 INFO : 68% Done

11 May 2020 16:16:50,360 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:50,360 INFO : Inserting SERPINI1

11 May 2020 16:16:50,364 INFO : 69% Done

11 May 2020 16:16:50,617 INFO : 70% Done

11 May 2020 16:16:50,858 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:50,858 INFO : Inserting SPINK1

11 May 2020 16:16:50,862 INFO : 71% Done

11 May 2020 16:16:51,142 INFO : 72% Done

11 May 2020 16:16:51,369 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:51,370 INFO : Inserting SPRC

11 May 2020 16:16:51,604 INFO : 73% Done

11 May 2020 16:16:51,831 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:51,831 INFO : Inserting TGFB1

11 May 2020 16:16:51,835 INFO : 74% Done

11 May 2020 16:16:52,312 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:52,312 INFO : Inserting TMPS2

11 May 2020 16:16:52,317 INFO : 75% Done

11 May 2020 16:16:52,548 INFO : 76% Done

11 May 2020 16:16:52,775 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:52,775 INFO : Inserting TPM2

11 May 2020 16:16:52,779 INFO : 77% Done

11 May 2020 16:16:53,009 INFO : 78% Done

11 May 2020 16:16:53,242 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:53,242 INFO : Inserting TWST1

11 May 2020 16:16:53,246 INFO : 79% Done

11 May 2020 16:16:53,477 INFO : 80% Done

11 May 2020 16:16:53,705 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:53,705 INFO : Inserting VEGFA

11 May 2020 16:16:53,709 INFO : 81% Done

11 May 2020 16:16:53,957 INFO : 82% Done

11 May 2020 16:16:54,188 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:54,189 INFO : Inserting PSA

11 May 2020 16:16:54,193 INFO : 83% Done

11 May 2020 16:16:54,657 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:54,657 INFO : Inserting ERG_pan

11 May 2020 16:16:54,661 INFO : 84% Done

11 May 2020 16:16:54,892 INFO : 85% Done

11 May 2020 16:16:55,145 INFO : 86% Done

11 May 2020 16:16:55,375 INFO : 87% Done

11 May 2020 16:16:55,605 INFO : 88% Done

11 May 2020 16:16:55,834 INFO : 89% Done

11 May 2020 16:16:56,064 INFO : 90% Done

11 May 2020 16:16:56,293 DEBUG: Total peptides inserted: 7

11 May 2020 16:16:56,294 INFO : Inserting ETV1

11 May 2020 16:16:56,298 INFO : 91% Done

11 May 2020 16:16:56,533 INFO : 92% Done

11 May 2020 16:16:56,767 INFO : 93% Done

11 May 2020 16:16:56,994 DEBUG: Total peptides inserted: 3

11 May 2020 16:16:56,994 INFO : Inserting ERG8

11 May 2020 16:16:56,999 INFO : 94% Done

11 May 2020 16:16:57,229 INFO : 95% Done

11 May 2020 16:16:57,456 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:57,456 INFO : Inserting SMAD4

11 May 2020 16:16:57,696 INFO : 96% Done

11 May 2020 16:16:57,866 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:57,866 INFO : Inserting STAT3

11 May 2020 16:16:57,870 INFO : 97% Done

11 May 2020 16:16:58,073 INFO : 98% Done

11 May 2020 16:16:58,272 DEBUG: Total peptides inserted: 2

11 May 2020 16:16:58,272 INFO : Done parsing Skyline document.

11 May 2020 16:16:58,274 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:16:58,421 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:16:59,371 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:16:59,629 INFO : Cleaning up temp tables

11 May 2020 16:16:59,924 INFO : Completed import of Skyline document from CPDR-FFPE-ID-249_2020-01-28_10-41-10.sky.zip

11 May 2020 16:16:59,925 INFO : 100% Done

11 May 2020 16:16:59,932 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80150/CPDR-FFPE-ID-249_2020-01-28_10-41-10.sky.zip into the system

11 May 2020 16:16:59,932 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80144/CPDR-FFPE-ID-299_2020-01-28_10-37-39/CPDR-FFPE-ID-299.skyd into the system

11 May 2020 16:16:59,933 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80144/CPDR-FFPE-ID-299_2020-01-28_10-37-39/CPDR-FFPE-ID-299.skyd into the system

11 May 2020 16:16:59,933 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80144/CPDR-FFPE-ID-299_2020-01-28_10-37-39.sky.zip into the system

11 May 2020 16:16:59,935 INFO : Starting import from CPDR-FFPE-ID-299_2020-01-28_10-37-39.sky.zip

11 May 2020 16:16:59,938 INFO : Starting to import Skyline document from CPDR-FFPE-ID-299_2020-01-28_10-37-39.sky.zip

11 May 2020 16:16:59,947 INFO : Expanding CPDR-FFPE-ID-299.skyd

11 May 2020 16:17:00,295 INFO : Expanding CPDR-FFPE-ID-299.sky.view

11 May 2020 16:17:00,296 INFO : Expanding CPDR-FFPE-ID-299.sky

11 May 2020 16:17:00,776 INFO : Inserting TFF3

11 May 2020 16:17:00,780 INFO : 1% Done

11 May 2020 16:17:00,868 INFO : 2% Done

11 May 2020 16:17:00,962 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:00,962 INFO : Inserting AKT1

11 May 2020 16:17:00,964 INFO : 3% Done

11 May 2020 16:17:01,055 INFO : 4% Done

11 May 2020 16:17:01,266 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:01,266 INFO : Inserting AMACR

11 May 2020 16:17:01,270 INFO : 5% Done

11 May 2020 16:17:01,500 INFO : 6% Done

11 May 2020 16:17:01,713 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:01,713 INFO : Inserting ANDR

11 May 2020 16:17:01,717 INFO : 7% Done

11 May 2020 16:17:02,155 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:02,155 INFO : Inserting ANXA2

11 May 2020 16:17:02,160 INFO : 8% Done

11 May 2020 16:17:02,373 INFO : 9% Done

11 May 2020 16:17:02,601 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:02,602 INFO : Inserting AURKA

11 May 2020 16:17:02,606 INFO : 10% Done

11 May 2020 16:17:02,844 INFO : 11% Done

11 May 2020 16:17:03,068 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:03,068 INFO : Inserting BRAF

11 May 2020 16:17:03,072 INFO : 12% Done

11 May 2020 16:17:03,285 INFO : 13% Done

11 May 2020 16:17:03,496 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:03,496 INFO : Inserting CAMKK2

11 May 2020 16:17:03,501 INFO : 14% Done

11 May 2020 16:17:03,737 INFO : 15% Done

11 May 2020 16:17:03,947 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:03,947 INFO : Inserting CCND1

11 May 2020 16:17:03,952 INFO : 16% Done

11 May 2020 16:17:04,165 INFO : 17% Done

11 May 2020 16:17:04,333 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:04,334 INFO : Inserting CDN1A

11 May 2020 16:17:04,556 INFO : 18% Done

11 May 2020 16:17:04,770 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:04,770 INFO : Inserting CRISP3

11 May 2020 16:17:04,774 INFO : 19% Done

11 May 2020 16:17:04,993 INFO : 20% Done

11 May 2020 16:17:05,203 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:05,203 INFO : Inserting DCOR

11 May 2020 16:17:05,207 INFO : 21% Done

11 May 2020 16:17:05,458 INFO : 22% Done

11 May 2020 16:17:05,701 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:05,701 INFO : Inserting EGFR

11 May 2020 16:17:05,705 INFO : 23% Done

11 May 2020 16:17:05,951 INFO : 24% Done

11 May 2020 16:17:06,150 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:06,150 INFO : Inserting EZH2

11 May 2020 16:17:06,154 INFO : 25% Done

11 May 2020 16:17:06,639 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:06,639 INFO : Inserting FGFR1

11 May 2020 16:17:06,887 INFO : 26% Done

11 May 2020 16:17:07,122 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:07,123 INFO : Inserting FOLH1

11 May 2020 16:17:07,127 INFO : 27% Done

11 May 2020 16:17:07,339 INFO : 28% Done

11 May 2020 16:17:07,552 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:07,552 INFO : Inserting HIF1A

11 May 2020 16:17:07,556 INFO : 29% Done

11 May 2020 16:17:07,770 INFO : 30% Done

11 May 2020 16:17:07,976 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:07,977 INFO : Inserting HPN

11 May 2020 16:17:07,981 INFO : 31% Done

11 May 2020 16:17:08,191 INFO : 32% Done

11 May 2020 16:17:08,398 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:08,398 INFO : Inserting HSPB1

11 May 2020 16:17:08,402 INFO : 33% Done

11 May 2020 16:17:08,618 INFO : 34% Done

11 May 2020 16:17:08,855 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:08,855 INFO : Inserting HXC6

11 May 2020 16:17:08,860 INFO : 35% Done

11 May 2020 16:17:09,075 INFO : 36% Done

11 May 2020 16:17:09,285 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:09,285 INFO : Inserting KLK11

11 May 2020 16:17:09,502 INFO : 37% Done

11 May 2020 16:17:09,739 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:09,740 INFO : Inserting KLK2

11 May 2020 16:17:09,744 INFO : 38% Done

11 May 2020 16:17:09,979 INFO : 39% Done

11 May 2020 16:17:10,215 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:10,215 INFO : Inserting MMP2

11 May 2020 16:17:10,219 INFO : 40% Done

11 May 2020 16:17:10,452 INFO : 41% Done

11 May 2020 16:17:10,594 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:10,594 INFO : Inserting MMP9

11 May 2020 16:17:10,598 INFO : 42% Done

11 May 2020 16:17:10,750 INFO : 43% Done

11 May 2020 16:17:10,898 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:10,898 INFO : Inserting MUC1

11 May 2020 16:17:10,902 INFO : 44% Done

11 May 2020 16:17:11,074 INFO : 45% Done

11 May 2020 16:17:11,307 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:11,307 INFO : Inserting MUC6

11 May 2020 16:17:11,312 INFO : 46% Done

11 May 2020 16:17:11,764 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:11,764 INFO : Inserting MYC

11 May 2020 16:17:11,768 INFO : 47% Done

11 May 2020 16:17:11,984 INFO : 48% Done

11 May 2020 16:17:12,200 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:12,200 INFO : Inserting MYCN

11 May 2020 16:17:12,204 INFO : 49% Done

11 May 2020 16:17:12,423 INFO : 50% Done

11 May 2020 16:17:12,652 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:12,652 INFO : Inserting MYO6

11 May 2020 16:17:12,657 INFO : 51% Done

11 May 2020 16:17:12,881 INFO : 52% Done

11 May 2020 16:17:13,096 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:13,096 INFO : Inserting NCOA2

11 May 2020 16:17:13,100 INFO : 53% Done

11 May 2020 16:17:13,320 INFO : 54% Done

11 May 2020 16:17:13,535 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:13,536 INFO : Inserting NPY

11 May 2020 16:17:13,540 INFO : 55% Done

11 May 2020 16:17:13,759 INFO : 56% Done

11 May 2020 16:17:13,993 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:13,993 INFO : Inserting O51E2

11 May 2020 16:17:14,173 INFO : 57% Done

11 May 2020 16:17:14,393 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:14,393 INFO : Inserting OSTP

11 May 2020 16:17:14,397 INFO : 58% Done

11 May 2020 16:17:14,613 INFO : 59% Done

11 May 2020 16:17:14,834 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:14,834 INFO : Inserting P53

11 May 2020 16:17:14,838 INFO : 60% Done

11 May 2020 16:17:15,056 INFO : 61% Done

11 May 2020 16:17:15,268 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:15,269 INFO : Inserting PAFA

11 May 2020 16:17:15,273 INFO : 62% Done

11 May 2020 16:17:15,488 INFO : 63% Done

11 May 2020 16:17:15,703 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:15,703 INFO : Inserting PGFRB

11 May 2020 16:17:15,883 INFO : 64% Done

11 May 2020 16:17:16,097 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:16,097 INFO : Inserting PK3CA

11 May 2020 16:17:16,101 INFO : 65% Done

11 May 2020 16:17:16,316 INFO : 66% Done

11 May 2020 16:17:16,527 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:16,528 INFO : Inserting RAF1

11 May 2020 16:17:16,532 INFO : 67% Done

11 May 2020 16:17:16,784 INFO : 68% Done

11 May 2020 16:17:16,962 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:16,962 INFO : Inserting SERPINI1

11 May 2020 16:17:16,966 INFO : 69% Done

11 May 2020 16:17:17,182 INFO : 70% Done

11 May 2020 16:17:17,394 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:17,394 INFO : Inserting SPINK1

11 May 2020 16:17:17,398 INFO : 71% Done

11 May 2020 16:17:17,619 INFO : 72% Done

11 May 2020 16:17:17,829 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:17,829 INFO : Inserting SPRC

11 May 2020 16:17:18,052 INFO : 73% Done

11 May 2020 16:17:18,264 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:18,264 INFO : Inserting TGFB1

11 May 2020 16:17:18,268 INFO : 74% Done

11 May 2020 16:17:18,692 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:18,692 INFO : Inserting TMPS2

11 May 2020 16:17:18,696 INFO : 75% Done

11 May 2020 16:17:18,917 INFO : 76% Done

11 May 2020 16:17:19,123 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:19,123 INFO : Inserting TPM2

11 May 2020 16:17:19,127 INFO : 77% Done

11 May 2020 16:17:19,336 INFO : 78% Done

11 May 2020 16:17:19,544 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:19,544 INFO : Inserting TWST1

11 May 2020 16:17:19,548 INFO : 79% Done

11 May 2020 16:17:19,761 INFO : 80% Done

11 May 2020 16:17:19,973 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:19,974 INFO : Inserting VEGFA

11 May 2020 16:17:19,978 INFO : 81% Done

11 May 2020 16:17:20,189 INFO : 82% Done

11 May 2020 16:17:20,394 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:20,394 INFO : Inserting PSA

11 May 2020 16:17:20,398 INFO : 83% Done

11 May 2020 16:17:20,817 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:20,818 INFO : Inserting ERG_pan

11 May 2020 16:17:20,836 INFO : 84% Done

11 May 2020 16:17:21,082 INFO : 85% Done

11 May 2020 16:17:21,296 INFO : 86% Done

11 May 2020 16:17:21,518 INFO : 87% Done

11 May 2020 16:17:21,729 INFO : 88% Done

11 May 2020 16:17:21,938 INFO : 89% Done

11 May 2020 16:17:22,153 INFO : 90% Done

11 May 2020 16:17:22,360 DEBUG: Total peptides inserted: 7

11 May 2020 16:17:22,360 INFO : Inserting ETV1

11 May 2020 16:17:22,365 INFO : 91% Done

11 May 2020 16:17:22,584 INFO : 92% Done

11 May 2020 16:17:22,775 INFO : 93% Done

11 May 2020 16:17:22,958 DEBUG: Total peptides inserted: 3

11 May 2020 16:17:22,958 INFO : Inserting ERG8

11 May 2020 16:17:22,962 INFO : 94% Done

11 May 2020 16:17:23,166 INFO : 95% Done

11 May 2020 16:17:23,377 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:23,377 INFO : Inserting SMAD4

11 May 2020 16:17:23,586 INFO : 96% Done

11 May 2020 16:17:23,752 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:23,753 INFO : Inserting STAT3

11 May 2020 16:17:23,757 INFO : 97% Done

11 May 2020 16:17:23,971 INFO : 98% Done

11 May 2020 16:17:24,180 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:24,180 INFO : Done parsing Skyline document.

11 May 2020 16:17:24,182 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:17:24,336 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:17:25,134 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:17:25,315 INFO : Cleaning up temp tables

11 May 2020 16:17:25,618 INFO : Completed import of Skyline document from CPDR-FFPE-ID-299_2020-01-28_10-37-39.sky.zip

11 May 2020 16:17:25,619 INFO : 100% Done

11 May 2020 16:17:25,624 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80144/CPDR-FFPE-ID-299_2020-01-28_10-37-39.sky.zip into the system

11 May 2020 16:17:25,624 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80136/CPDR-FFPE-ID-336_2020-01-28_10-32-24/CPDR-FFPE-ID-336.skyd into the system

11 May 2020 16:17:25,625 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80136/CPDR-FFPE-ID-336_2020-01-28_10-32-24/CPDR-FFPE-ID-336.skyd into the system

11 May 2020 16:17:25,625 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80136/CPDR-FFPE-ID-336_2020-01-28_10-32-24.sky.zip into the system

11 May 2020 16:17:25,627 INFO : Starting import from CPDR-FFPE-ID-336_2020-01-28_10-32-24.sky.zip

11 May 2020 16:17:25,630 INFO : Starting to import Skyline document from CPDR-FFPE-ID-336_2020-01-28_10-32-24.sky.zip

11 May 2020 16:17:25,637 INFO : Expanding CPDR-FFPE-ID-336.skyd

11 May 2020 16:17:25,810 INFO : Expanding CPDR-FFPE-ID-336.sky.view

11 May 2020 16:17:25,810 INFO : Expanding CPDR-FFPE-ID-336.sky

11 May 2020 16:17:26,085 INFO : Inserting TFF3

11 May 2020 16:17:26,089 INFO : 1% Done

11 May 2020 16:17:26,175 INFO : 2% Done

11 May 2020 16:17:26,256 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:26,256 INFO : Inserting AKT1

11 May 2020 16:17:26,258 INFO : 3% Done

11 May 2020 16:17:26,325 INFO : 4% Done

11 May 2020 16:17:26,406 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:26,406 INFO : Inserting AMACR

11 May 2020 16:17:26,407 INFO : 5% Done

11 May 2020 16:17:26,519 INFO : 6% Done

11 May 2020 16:17:26,626 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:26,626 INFO : Inserting ANDR

11 May 2020 16:17:26,628 INFO : 7% Done

11 May 2020 16:17:26,723 INFO : 8% Done

11 May 2020 16:17:26,815 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:26,815 INFO : Inserting ANXA2

11 May 2020 16:17:26,912 INFO : 9% Done

11 May 2020 16:17:27,004 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:27,004 INFO : Inserting AURKA

11 May 2020 16:17:27,006 INFO : 10% Done

11 May 2020 16:17:27,105 INFO : 11% Done

11 May 2020 16:17:27,218 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:27,218 INFO : Inserting BRAF

11 May 2020 16:17:27,220 INFO : 12% Done

11 May 2020 16:17:27,339 INFO : 13% Done

11 May 2020 16:17:27,450 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:27,450 INFO : Inserting CAMKK2

11 May 2020 16:17:27,452 INFO : 14% Done

11 May 2020 16:17:27,594 INFO : 15% Done

11 May 2020 16:17:27,827 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:27,827 INFO : Inserting CCND1

11 May 2020 16:17:27,832 INFO : 16% Done

11 May 2020 16:17:28,035 INFO : 17% Done

11 May 2020 16:17:28,202 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:28,202 INFO : Inserting CDN1A

11 May 2020 16:17:28,413 INFO : 18% Done

11 May 2020 16:17:28,642 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:28,643 INFO : Inserting CRISP3

11 May 2020 16:17:28,647 INFO : 19% Done

11 May 2020 16:17:28,855 INFO : 20% Done

11 May 2020 16:17:29,075 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:29,075 INFO : Inserting DCOR

11 May 2020 16:17:29,080 INFO : 21% Done

11 May 2020 16:17:29,302 INFO : 22% Done

11 May 2020 16:17:29,536 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:29,536 INFO : Inserting EGFR

11 May 2020 16:17:29,540 INFO : 23% Done

11 May 2020 16:17:29,744 INFO : 24% Done

11 May 2020 16:17:29,931 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:29,931 INFO : Inserting EZH2

11 May 2020 16:17:29,935 INFO : 25% Done

11 May 2020 16:17:30,386 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:30,386 INFO : Inserting FGFR1

11 May 2020 16:17:30,594 INFO : 26% Done

11 May 2020 16:17:30,805 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:30,806 INFO : Inserting FOLH1

11 May 2020 16:17:30,810 INFO : 27% Done

11 May 2020 16:17:31,060 INFO : 28% Done

11 May 2020 16:17:31,371 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:31,371 INFO : Inserting HIF1A

11 May 2020 16:17:31,375 INFO : 29% Done

11 May 2020 16:17:31,608 INFO : 30% Done

11 May 2020 16:17:31,884 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:31,884 INFO : Inserting HPN

11 May 2020 16:17:31,888 INFO : 31% Done

11 May 2020 16:17:32,130 INFO : 32% Done

11 May 2020 16:17:32,338 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:32,339 INFO : Inserting HSPB1

11 May 2020 16:17:32,343 INFO : 33% Done

11 May 2020 16:17:32,551 INFO : 34% Done

11 May 2020 16:17:32,779 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:32,779 INFO : Inserting HXC6

11 May 2020 16:17:32,784 INFO : 35% Done

11 May 2020 16:17:33,019 INFO : 36% Done

11 May 2020 16:17:33,251 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:33,251 INFO : Inserting KLK11

11 May 2020 16:17:33,255 INFO : 37% Done

11 May 2020 16:17:33,787 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:33,787 INFO : Inserting KLK2

11 May 2020 16:17:33,791 INFO : 38% Done

11 May 2020 16:17:34,023 INFO : 39% Done

11 May 2020 16:17:34,253 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:34,253 INFO : Inserting MMP2

11 May 2020 16:17:34,258 INFO : 40% Done

11 May 2020 16:17:34,491 INFO : 41% Done

11 May 2020 16:17:34,698 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:34,698 INFO : Inserting MMP9

11 May 2020 16:17:34,702 INFO : 42% Done

11 May 2020 16:17:34,934 INFO : 43% Done

11 May 2020 16:17:35,164 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:35,164 INFO : Inserting MUC1

11 May 2020 16:17:35,168 INFO : 44% Done

11 May 2020 16:17:35,385 INFO : 45% Done

11 May 2020 16:17:35,601 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:35,601 INFO : Inserting MUC6

11 May 2020 16:17:35,810 INFO : 46% Done

11 May 2020 16:17:36,013 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:36,014 INFO : Inserting MYC

11 May 2020 16:17:36,018 INFO : 47% Done

11 May 2020 16:17:36,222 INFO : 48% Done

11 May 2020 16:17:36,422 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:36,423 INFO : Inserting MYCN

11 May 2020 16:17:36,427 INFO : 49% Done

11 May 2020 16:17:36,646 INFO : 50% Done

11 May 2020 16:17:36,849 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:36,849 INFO : Inserting MYO6

11 May 2020 16:17:36,853 INFO : 51% Done

11 May 2020 16:17:37,063 INFO : 52% Done

11 May 2020 16:17:37,267 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:37,267 INFO : Inserting NCOA2

11 May 2020 16:17:37,271 INFO : 53% Done

11 May 2020 16:17:37,499 INFO : 54% Done

11 May 2020 16:17:37,707 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:37,707 INFO : Inserting NPY

11 May 2020 16:17:37,711 INFO : 55% Done

11 May 2020 16:17:37,915 INFO : 56% Done

11 May 2020 16:17:38,115 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:38,115 INFO : Inserting O51E2

11 May 2020 16:17:38,283 INFO : 57% Done

11 May 2020 16:17:38,485 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:38,485 INFO : Inserting OSTP

11 May 2020 16:17:38,489 INFO : 58% Done

11 May 2020 16:17:38,717 INFO : 59% Done

11 May 2020 16:17:38,917 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:38,917 INFO : Inserting P53

11 May 2020 16:17:38,921 INFO : 60% Done

11 May 2020 16:17:39,126 INFO : 61% Done

11 May 2020 16:17:39,326 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:39,327 INFO : Inserting PAFA

11 May 2020 16:17:39,331 INFO : 62% Done

11 May 2020 16:17:39,538 INFO : 63% Done

11 May 2020 16:17:39,740 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:39,741 INFO : Inserting PGFRB

11 May 2020 16:17:39,913 INFO : 64% Done

11 May 2020 16:17:40,112 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:40,112 INFO : Inserting PK3CA

11 May 2020 16:17:40,119 INFO : 65% Done

11 May 2020 16:17:40,326 INFO : 66% Done

11 May 2020 16:17:40,531 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:40,531 INFO : Inserting RAF1

11 May 2020 16:17:40,535 INFO : 67% Done

11 May 2020 16:17:40,740 INFO : 68% Done

11 May 2020 16:17:40,900 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:40,900 INFO : Inserting SERPINI1

11 May 2020 16:17:40,904 INFO : 69% Done

11 May 2020 16:17:41,109 INFO : 70% Done

11 May 2020 16:17:41,312 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:41,312 INFO : Inserting SPINK1

11 May 2020 16:17:41,317 INFO : 71% Done

11 May 2020 16:17:41,530 INFO : 72% Done

11 May 2020 16:17:41,734 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:41,734 INFO : Inserting SPRC

11 May 2020 16:17:41,956 INFO : 73% Done

11 May 2020 16:17:42,208 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:42,208 INFO : Inserting TGFB1

11 May 2020 16:17:42,212 INFO : 74% Done

11 May 2020 16:17:42,662 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:42,662 INFO : Inserting TMPS2

11 May 2020 16:17:42,666 INFO : 75% Done

11 May 2020 16:17:42,871 INFO : 76% Done

11 May 2020 16:17:43,074 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:43,074 INFO : Inserting TPM2

11 May 2020 16:17:43,079 INFO : 77% Done

11 May 2020 16:17:43,285 INFO : 78% Done

11 May 2020 16:17:43,490 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:43,490 INFO : Inserting TWST1

11 May 2020 16:17:43,495 INFO : 79% Done

11 May 2020 16:17:43,703 INFO : 80% Done

11 May 2020 16:17:43,905 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:43,905 INFO : Inserting VEGFA

11 May 2020 16:17:43,909 INFO : 81% Done

11 May 2020 16:17:44,115 INFO : 82% Done

11 May 2020 16:17:44,318 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:44,318 INFO : Inserting PSA

11 May 2020 16:17:44,322 INFO : 83% Done

11 May 2020 16:17:44,734 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:44,734 INFO : Inserting ERG_pan

11 May 2020 16:17:44,738 INFO : 84% Done

11 May 2020 16:17:44,944 INFO : 85% Done

11 May 2020 16:17:45,148 INFO : 86% Done

11 May 2020 16:17:45,351 INFO : 87% Done

11 May 2020 16:17:45,564 INFO : 88% Done

11 May 2020 16:17:45,770 INFO : 89% Done

11 May 2020 16:17:45,976 INFO : 90% Done

11 May 2020 16:17:46,178 DEBUG: Total peptides inserted: 7

11 May 2020 16:17:46,178 INFO : Inserting ETV1

11 May 2020 16:17:46,182 INFO : 91% Done

11 May 2020 16:17:46,433 INFO : 92% Done

11 May 2020 16:17:46,640 INFO : 93% Done

11 May 2020 16:17:46,839 DEBUG: Total peptides inserted: 3

11 May 2020 16:17:46,839 INFO : Inserting ERG8

11 May 2020 16:17:46,843 INFO : 94% Done

11 May 2020 16:17:47,044 INFO : 95% Done

11 May 2020 16:17:47,241 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:47,241 INFO : Inserting SMAD4

11 May 2020 16:17:47,523 INFO : 96% Done

11 May 2020 16:17:47,705 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:47,705 INFO : Inserting STAT3

11 May 2020 16:17:47,709 INFO : 97% Done

11 May 2020 16:17:47,935 INFO : 98% Done

11 May 2020 16:17:48,160 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:48,160 INFO : Done parsing Skyline document.

11 May 2020 16:17:48,163 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:17:48,310 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:17:49,098 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:17:49,276 INFO : Cleaning up temp tables

11 May 2020 16:17:49,607 INFO : Completed import of Skyline document from CPDR-FFPE-ID-336_2020-01-28_10-32-24.sky.zip

11 May 2020 16:17:49,609 INFO : 100% Done

11 May 2020 16:17:49,620 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80136/CPDR-FFPE-ID-336_2020-01-28_10-32-24.sky.zip into the system

11 May 2020 16:17:49,621 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80135/CPDR-FFPE-ID-292_2020-01-28_10-31-54/CPDR-FFPE-ID-292.skyd into the system

11 May 2020 16:17:49,622 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80135/CPDR-FFPE-ID-292_2020-01-28_10-31-54/CPDR-FFPE-ID-292.skyd into the system

11 May 2020 16:17:49,622 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80135/CPDR-FFPE-ID-292_2020-01-28_10-31-54.sky.zip into the system

11 May 2020 16:17:49,626 INFO : Starting import from CPDR-FFPE-ID-292_2020-01-28_10-31-54.sky.zip

11 May 2020 16:17:49,633 INFO : Starting to import Skyline document from CPDR-FFPE-ID-292_2020-01-28_10-31-54.sky.zip

11 May 2020 16:17:49,651 INFO : Expanding CPDR-FFPE-ID-292.skyd

11 May 2020 16:17:50,080 INFO : Expanding CPDR-FFPE-ID-292.sky.view

11 May 2020 16:17:50,081 INFO : Expanding CPDR-FFPE-ID-292.sky

11 May 2020 16:17:50,652 INFO : Inserting TFF3

11 May 2020 16:17:50,655 INFO : 1% Done

11 May 2020 16:17:50,791 INFO : 2% Done

11 May 2020 16:17:50,911 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:50,911 INFO : Inserting AKT1

11 May 2020 16:17:50,913 INFO : 3% Done

11 May 2020 16:17:51,006 INFO : 4% Done

11 May 2020 16:17:51,190 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:51,190 INFO : Inserting AMACR

11 May 2020 16:17:51,194 INFO : 5% Done

11 May 2020 16:17:51,397 INFO : 6% Done

11 May 2020 16:17:51,596 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:51,596 INFO : Inserting ANDR

11 May 2020 16:17:51,600 INFO : 7% Done

11 May 2020 16:17:52,003 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:52,003 INFO : Inserting ANXA2

11 May 2020 16:17:52,007 INFO : 8% Done

11 May 2020 16:17:52,213 INFO : 9% Done

11 May 2020 16:17:52,411 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:52,411 INFO : Inserting AURKA

11 May 2020 16:17:52,415 INFO : 10% Done

11 May 2020 16:17:52,614 INFO : 11% Done

11 May 2020 16:17:52,843 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:52,843 INFO : Inserting BRAF

11 May 2020 16:17:52,847 INFO : 12% Done

11 May 2020 16:17:53,049 INFO : 13% Done

11 May 2020 16:17:53,249 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:53,249 INFO : Inserting CAMKK2

11 May 2020 16:17:53,254 INFO : 14% Done

11 May 2020 16:17:53,460 INFO : 15% Done

11 May 2020 16:17:53,674 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:53,675 INFO : Inserting CCND1

11 May 2020 16:17:53,679 INFO : 16% Done

11 May 2020 16:17:54,067 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:54,068 INFO : Inserting CDN1A

11 May 2020 16:17:54,072 INFO : 17% Done

11 May 2020 16:17:54,279 INFO : 18% Done

11 May 2020 16:17:54,481 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:54,481 INFO : Inserting CRISP3

11 May 2020 16:17:54,485 INFO : 19% Done

11 May 2020 16:17:54,691 INFO : 20% Done

11 May 2020 16:17:54,902 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:54,903 INFO : Inserting DCOR

11 May 2020 16:17:54,907 INFO : 21% Done

11 May 2020 16:17:55,119 INFO : 22% Done

11 May 2020 16:17:55,323 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:55,323 INFO : Inserting EGFR

11 May 2020 16:17:55,328 INFO : 23% Done

11 May 2020 16:17:55,539 INFO : 24% Done

11 May 2020 16:17:55,708 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:55,708 INFO : Inserting EZH2

11 May 2020 16:17:55,712 INFO : 25% Done

11 May 2020 16:17:56,154 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:56,154 INFO : Inserting FGFR1

11 May 2020 16:17:56,370 INFO : 26% Done

11 May 2020 16:17:56,573 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:56,573 INFO : Inserting FOLH1

11 May 2020 16:17:56,577 INFO : 27% Done

11 May 2020 16:17:56,781 INFO : 28% Done

11 May 2020 16:17:56,983 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:56,983 INFO : Inserting HIF1A

11 May 2020 16:17:56,987 INFO : 29% Done

11 May 2020 16:17:57,191 INFO : 30% Done

11 May 2020 16:17:57,392 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:57,392 INFO : Inserting HPN

11 May 2020 16:17:57,397 INFO : 31% Done

11 May 2020 16:17:57,607 INFO : 32% Done

11 May 2020 16:17:57,888 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:57,888 INFO : Inserting HSPB1

11 May 2020 16:17:57,893 INFO : 33% Done

11 May 2020 16:17:58,100 INFO : 34% Done

11 May 2020 16:17:58,303 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:58,303 INFO : Inserting HXC6

11 May 2020 16:17:58,307 INFO : 35% Done

11 May 2020 16:17:58,514 INFO : 36% Done

11 May 2020 16:17:58,720 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:58,720 INFO : Inserting KLK11

11 May 2020 16:17:58,724 INFO : 37% Done

11 May 2020 16:17:59,136 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:59,136 INFO : Inserting KLK2

11 May 2020 16:17:59,140 INFO : 38% Done

11 May 2020 16:17:59,347 INFO : 39% Done

11 May 2020 16:17:59,557 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:59,557 INFO : Inserting MMP2

11 May 2020 16:17:59,561 INFO : 40% Done

11 May 2020 16:17:59,772 INFO : 41% Done

11 May 2020 16:17:59,936 DEBUG: Total peptides inserted: 2

11 May 2020 16:17:59,937 INFO : Inserting MMP9

11 May 2020 16:17:59,941 INFO : 42% Done

11 May 2020 16:18:00,151 INFO : 43% Done

11 May 2020 16:18:00,352 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:00,352 INFO : Inserting MUC1

11 May 2020 16:18:00,356 INFO : 44% Done

11 May 2020 16:18:00,566 INFO : 45% Done

11 May 2020 16:18:00,775 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:00,775 INFO : Inserting MUC6

11 May 2020 16:18:00,988 INFO : 46% Done

11 May 2020 16:18:01,200 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:01,200 INFO : Inserting MYC

11 May 2020 16:18:01,204 INFO : 47% Done

11 May 2020 16:18:01,412 INFO : 48% Done

11 May 2020 16:18:01,633 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:01,634 INFO : Inserting MYCN

11 May 2020 16:18:01,638 INFO : 49% Done

11 May 2020 16:18:01,847 INFO : 50% Done

11 May 2020 16:18:02,048 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:02,048 INFO : Inserting MYO6

11 May 2020 16:18:02,052 INFO : 51% Done

11 May 2020 16:18:02,257 INFO : 52% Done

11 May 2020 16:18:02,458 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:02,458 INFO : Inserting NCOA2

11 May 2020 16:18:02,462 INFO : 53% Done

11 May 2020 16:18:02,669 INFO : 54% Done

11 May 2020 16:18:02,871 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:02,872 INFO : Inserting NPY

11 May 2020 16:18:02,876 INFO : 55% Done

11 May 2020 16:18:03,080 INFO : 56% Done

11 May 2020 16:18:03,283 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:03,283 INFO : Inserting O51E2

11 May 2020 16:18:03,450 INFO : 57% Done

11 May 2020 16:18:03,652 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:03,652 INFO : Inserting OSTP

11 May 2020 16:18:03,656 INFO : 58% Done

11 May 2020 16:18:03,860 INFO : 59% Done

11 May 2020 16:18:04,062 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:04,062 INFO : Inserting P53

11 May 2020 16:18:04,066 INFO : 60% Done

11 May 2020 16:18:04,272 INFO : 61% Done

11 May 2020 16:18:04,477 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:04,477 INFO : Inserting PAFA

11 May 2020 16:18:04,481 INFO : 62% Done

11 May 2020 16:18:04,691 INFO : 63% Done

11 May 2020 16:18:04,892 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:04,892 INFO : Inserting PGFRB

11 May 2020 16:18:05,064 INFO : 64% Done

11 May 2020 16:18:05,277 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:05,277 INFO : Inserting PK3CA

11 May 2020 16:18:05,281 INFO : 65% Done

11 May 2020 16:18:05,495 INFO : 66% Done

11 May 2020 16:18:05,702 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:05,703 INFO : Inserting RAF1

11 May 2020 16:18:05,707 INFO : 67% Done

11 May 2020 16:18:05,945 INFO : 68% Done

11 May 2020 16:18:06,108 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:06,108 INFO : Inserting SERPINI1

11 May 2020 16:18:06,112 INFO : 69% Done

11 May 2020 16:18:06,315 INFO : 70% Done

11 May 2020 16:18:06,517 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:06,517 INFO : Inserting SPINK1

11 May 2020 16:18:06,522 INFO : 71% Done

11 May 2020 16:18:06,729 INFO : 72% Done

11 May 2020 16:18:06,928 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:06,928 INFO : Inserting SPRC

11 May 2020 16:18:07,146 INFO : 73% Done

11 May 2020 16:18:07,348 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:07,348 INFO : Inserting TGFB1

11 May 2020 16:18:07,352 INFO : 74% Done

11 May 2020 16:18:07,754 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:07,754 INFO : Inserting TMPS2

11 May 2020 16:18:07,758 INFO : 75% Done

11 May 2020 16:18:08,020 INFO : 76% Done

11 May 2020 16:18:08,231 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:08,231 INFO : Inserting TPM2

11 May 2020 16:18:08,236 INFO : 77% Done

11 May 2020 16:18:08,512 INFO : 78% Done

11 May 2020 16:18:08,717 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:08,718 INFO : Inserting TWST1

11 May 2020 16:18:08,724 INFO : 79% Done

11 May 2020 16:18:08,939 INFO : 80% Done

11 May 2020 16:18:09,143 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:09,143 INFO : Inserting VEGFA

11 May 2020 16:18:09,148 INFO : 81% Done

11 May 2020 16:18:09,366 INFO : 82% Done

11 May 2020 16:18:09,570 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:09,570 INFO : Inserting PSA

11 May 2020 16:18:09,575 INFO : 83% Done

11 May 2020 16:18:10,062 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:10,062 INFO : Inserting ERG_pan

11 May 2020 16:18:10,067 INFO : 84% Done

11 May 2020 16:18:10,283 INFO : 85% Done

11 May 2020 16:18:10,502 INFO : 86% Done

11 May 2020 16:18:10,729 INFO : 87% Done

11 May 2020 16:18:10,931 INFO : 88% Done

11 May 2020 16:18:11,131 INFO : 89% Done

11 May 2020 16:18:11,333 INFO : 90% Done

11 May 2020 16:18:11,532 DEBUG: Total peptides inserted: 7

11 May 2020 16:18:11,532 INFO : Inserting ETV1

11 May 2020 16:18:11,537 INFO : 91% Done

11 May 2020 16:18:11,741 INFO : 92% Done

11 May 2020 16:18:11,942 INFO : 93% Done

11 May 2020 16:18:12,142 DEBUG: Total peptides inserted: 3

11 May 2020 16:18:12,142 INFO : Inserting ERG8

11 May 2020 16:18:12,147 INFO : 94% Done

11 May 2020 16:18:12,352 INFO : 95% Done

11 May 2020 16:18:12,552 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:12,552 INFO : Inserting SMAD4

11 May 2020 16:18:12,590 INFO : 96% Done

11 May 2020 16:18:12,964 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:12,964 INFO : Inserting STAT3

11 May 2020 16:18:12,968 INFO : 97% Done

11 May 2020 16:18:13,172 INFO : 98% Done

11 May 2020 16:18:13,371 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:13,372 INFO : Done parsing Skyline document.

11 May 2020 16:18:13,374 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:18:13,521 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:18:14,225 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:18:14,400 INFO : Cleaning up temp tables

11 May 2020 16:18:14,692 INFO : Completed import of Skyline document from CPDR-FFPE-ID-292_2020-01-28_10-31-54.sky.zip

11 May 2020 16:18:14,693 INFO : 100% Done

11 May 2020 16:18:14,710 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80135/CPDR-FFPE-ID-292_2020-01-28_10-31-54.sky.zip into the system

11 May 2020 16:18:14,710 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80129/CPDR-FFPE-ID-241_2020-01-28_10-28-06/CPDR-FFPE-ID-241.skyd into the system

11 May 2020 16:18:14,710 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80129/CPDR-FFPE-ID-241_2020-01-28_10-28-06/CPDR-FFPE-ID-241.skyd into the system

11 May 2020 16:18:14,710 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80129/CPDR-FFPE-ID-241_2020-01-28_10-28-06.sky.zip into the system

11 May 2020 16:18:14,712 INFO : Starting import from CPDR-FFPE-ID-241_2020-01-28_10-28-06.sky.zip

11 May 2020 16:18:14,715 INFO : Starting to import Skyline document from CPDR-FFPE-ID-241_2020-01-28_10-28-06.sky.zip

11 May 2020 16:18:14,723 INFO : Expanding CPDR-FFPE-ID-241.skyd

11 May 2020 16:18:14,913 INFO : Expanding CPDR-FFPE-ID-241.sky.view

11 May 2020 16:18:14,913 INFO : Expanding CPDR-FFPE-ID-241.sky

11 May 2020 16:18:15,483 INFO : Inserting TFF3

11 May 2020 16:18:15,492 INFO : 1% Done

11 May 2020 16:18:15,723 INFO : 2% Done

11 May 2020 16:18:15,939 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:15,940 INFO : Inserting AKT1

11 May 2020 16:18:15,944 INFO : 3% Done

11 May 2020 16:18:16,119 INFO : 4% Done

11 May 2020 16:18:16,333 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:16,333 INFO : Inserting AMACR

11 May 2020 16:18:16,337 INFO : 5% Done

11 May 2020 16:18:16,554 INFO : 6% Done

11 May 2020 16:18:16,769 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:16,769 INFO : Inserting ANDR

11 May 2020 16:18:16,773 INFO : 7% Done

11 May 2020 16:18:17,203 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:17,203 INFO : Inserting ANXA2

11 May 2020 16:18:17,207 INFO : 8% Done

11 May 2020 16:18:17,425 INFO : 9% Done

11 May 2020 16:18:17,644 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:17,644 INFO : Inserting AURKA

11 May 2020 16:18:17,649 INFO : 10% Done

11 May 2020 16:18:17,868 INFO : 11% Done

11 May 2020 16:18:18,082 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:18,082 INFO : Inserting BRAF

11 May 2020 16:18:18,086 INFO : 12% Done

11 May 2020 16:18:18,303 INFO : 13% Done

11 May 2020 16:18:18,517 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:18,517 INFO : Inserting CAMKK2

11 May 2020 16:18:18,522 INFO : 14% Done

11 May 2020 16:18:18,740 INFO : 15% Done

11 May 2020 16:18:18,957 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:18,957 INFO : Inserting CCND1

11 May 2020 16:18:18,962 INFO : 16% Done

11 May 2020 16:18:19,182 INFO : 17% Done

11 May 2020 16:18:19,352 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:19,352 INFO : Inserting CDN1A

11 May 2020 16:18:19,575 INFO : 18% Done

11 May 2020 16:18:19,792 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:19,792 INFO : Inserting CRISP3

11 May 2020 16:18:19,797 INFO : 19% Done

11 May 2020 16:18:20,014 INFO : 20% Done

11 May 2020 16:18:20,491 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:20,491 INFO : Inserting DCOR

11 May 2020 16:18:20,495 INFO : 21% Done

11 May 2020 16:18:20,743 INFO : 22% Done

11 May 2020 16:18:20,987 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:20,987 INFO : Inserting EGFR

11 May 2020 16:18:20,992 INFO : 23% Done

11 May 2020 16:18:21,238 INFO : 24% Done

11 May 2020 16:18:21,424 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:21,424 INFO : Inserting EZH2

11 May 2020 16:18:21,427 INFO : 25% Done

11 May 2020 16:18:21,834 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:21,834 INFO : Inserting FGFR1

11 May 2020 16:18:22,041 INFO : 26% Done

11 May 2020 16:18:22,268 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:22,268 INFO : Inserting FOLH1

11 May 2020 16:18:22,272 INFO : 27% Done

11 May 2020 16:18:22,489 INFO : 28% Done

11 May 2020 16:18:22,706 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:22,707 INFO : Inserting HIF1A

11 May 2020 16:18:22,711 INFO : 29% Done

11 May 2020 16:18:22,930 INFO : 30% Done

11 May 2020 16:18:23,095 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:23,096 INFO : Inserting HPN

11 May 2020 16:18:23,100 INFO : 31% Done

11 May 2020 16:18:23,230 INFO : 32% Done

11 May 2020 16:18:23,357 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:23,357 INFO : Inserting HSPB1

11 May 2020 16:18:23,361 INFO : 33% Done

11 May 2020 16:18:23,493 INFO : 34% Done

11 May 2020 16:18:23,698 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:23,698 INFO : Inserting HXC6

11 May 2020 16:18:23,703 INFO : 35% Done

11 May 2020 16:18:23,941 INFO : 36% Done

11 May 2020 16:18:24,178 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:24,178 INFO : Inserting KLK11

11 May 2020 16:18:24,422 INFO : 37% Done

11 May 2020 16:18:24,659 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:24,659 INFO : Inserting KLK2

11 May 2020 16:18:24,663 INFO : 38% Done

11 May 2020 16:18:24,901 INFO : 39% Done

11 May 2020 16:18:25,139 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:25,139 INFO : Inserting MMP2

11 May 2020 16:18:25,144 INFO : 40% Done

11 May 2020 16:18:25,379 INFO : 41% Done

11 May 2020 16:18:25,568 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:25,568 INFO : Inserting MMP9

11 May 2020 16:18:25,572 INFO : 42% Done

11 May 2020 16:18:25,811 INFO : 43% Done

11 May 2020 16:18:26,045 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:26,045 INFO : Inserting MUC1

11 May 2020 16:18:26,050 INFO : 44% Done

11 May 2020 16:18:26,289 INFO : 45% Done

11 May 2020 16:18:26,530 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:26,530 INFO : Inserting MUC6

11 May 2020 16:18:26,535 INFO : 46% Done

11 May 2020 16:18:26,980 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:26,981 INFO : Inserting MYC

11 May 2020 16:18:26,985 INFO : 47% Done

11 May 2020 16:18:27,207 INFO : 48% Done

11 May 2020 16:18:27,431 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:27,431 INFO : Inserting MYCN

11 May 2020 16:18:27,435 INFO : 49% Done

11 May 2020 16:18:27,661 INFO : 50% Done

11 May 2020 16:18:27,889 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:27,889 INFO : Inserting MYO6

11 May 2020 16:18:27,894 INFO : 51% Done

11 May 2020 16:18:28,115 INFO : 52% Done

11 May 2020 16:18:28,333 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:28,333 INFO : Inserting NCOA2

11 May 2020 16:18:28,337 INFO : 53% Done

11 May 2020 16:18:28,558 INFO : 54% Done

11 May 2020 16:18:28,771 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:28,772 INFO : Inserting NPY

11 May 2020 16:18:28,776 INFO : 55% Done

11 May 2020 16:18:28,997 INFO : 56% Done

11 May 2020 16:18:29,211 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:29,211 INFO : Inserting O51E2

11 May 2020 16:18:29,389 INFO : 57% Done

11 May 2020 16:18:29,607 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:29,607 INFO : Inserting OSTP

11 May 2020 16:18:29,612 INFO : 58% Done

11 May 2020 16:18:29,836 INFO : 59% Done

11 May 2020 16:18:30,053 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:30,054 INFO : Inserting P53

11 May 2020 16:18:30,058 INFO : 60% Done

11 May 2020 16:18:30,280 INFO : 61% Done

11 May 2020 16:18:30,499 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:30,499 INFO : Inserting PAFA

11 May 2020 16:18:30,503 INFO : 62% Done

11 May 2020 16:18:30,727 INFO : 63% Done

11 May 2020 16:18:30,946 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:30,947 INFO : Inserting PGFRB

11 May 2020 16:18:30,950 INFO : 64% Done

11 May 2020 16:18:31,438 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:31,438 INFO : Inserting PK3CA

11 May 2020 16:18:31,442 INFO : 65% Done

11 May 2020 16:18:31,661 INFO : 66% Done

11 May 2020 16:18:31,875 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:31,875 INFO : Inserting RAF1

11 May 2020 16:18:31,880 INFO : 67% Done

11 May 2020 16:18:32,096 INFO : 68% Done

11 May 2020 16:18:32,385 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:32,385 INFO : Inserting SERPINI1

11 May 2020 16:18:32,389 INFO : 69% Done

11 May 2020 16:18:32,608 INFO : 70% Done

11 May 2020 16:18:32,823 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:32,823 INFO : Inserting SPINK1

11 May 2020 16:18:32,827 INFO : 71% Done

11 May 2020 16:18:33,047 INFO : 72% Done

11 May 2020 16:18:33,313 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:33,314 INFO : Inserting SPRC

11 May 2020 16:18:33,538 INFO : 73% Done

11 May 2020 16:18:33,751 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:33,752 INFO : Inserting TGFB1

11 May 2020 16:18:33,756 INFO : 74% Done

11 May 2020 16:18:34,216 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:34,216 INFO : Inserting TMPS2

11 May 2020 16:18:34,220 INFO : 75% Done

11 May 2020 16:18:34,440 INFO : 76% Done

11 May 2020 16:18:34,655 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:34,656 INFO : Inserting TPM2

11 May 2020 16:18:34,660 INFO : 77% Done

11 May 2020 16:18:34,879 INFO : 78% Done

11 May 2020 16:18:35,095 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:35,095 INFO : Inserting TWST1

11 May 2020 16:18:35,099 INFO : 79% Done

11 May 2020 16:18:35,318 INFO : 80% Done

11 May 2020 16:18:35,532 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:35,533 INFO : Inserting VEGFA

11 May 2020 16:18:35,537 INFO : 81% Done

11 May 2020 16:18:35,756 INFO : 82% Done

11 May 2020 16:18:35,972 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:35,972 INFO : Inserting PSA

11 May 2020 16:18:35,977 INFO : 83% Done

11 May 2020 16:18:36,193 INFO : 84% Done

11 May 2020 16:18:36,406 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:36,406 INFO : Inserting ERG_pan

11 May 2020 16:18:36,634 INFO : 85% Done

11 May 2020 16:18:36,854 INFO : 86% Done

11 May 2020 16:18:37,071 INFO : 87% Done

11 May 2020 16:18:37,289 INFO : 88% Done

11 May 2020 16:18:37,506 INFO : 89% Done

11 May 2020 16:18:37,727 INFO : 90% Done

11 May 2020 16:18:37,940 DEBUG: Total peptides inserted: 7

11 May 2020 16:18:37,940 INFO : Inserting ETV1

11 May 2020 16:18:37,944 INFO : 91% Done

11 May 2020 16:18:38,239 INFO : 92% Done

11 May 2020 16:18:38,464 INFO : 93% Done

11 May 2020 16:18:38,654 DEBUG: Total peptides inserted: 3

11 May 2020 16:18:38,654 INFO : Inserting ERG8

11 May 2020 16:18:38,658 INFO : 94% Done

11 May 2020 16:18:38,840 INFO : 95% Done

11 May 2020 16:18:39,023 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:39,023 INFO : Inserting SMAD4

11 May 2020 16:18:39,251 INFO : 96% Done

11 May 2020 16:18:39,423 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:39,423 INFO : Inserting STAT3

11 May 2020 16:18:39,427 INFO : 97% Done

11 May 2020 16:18:39,647 INFO : 98% Done

11 May 2020 16:18:39,865 DEBUG: Total peptides inserted: 2

11 May 2020 16:18:39,865 INFO : Done parsing Skyline document.

11 May 2020 16:18:39,867 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:18:40,024 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:18:41,034 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:18:41,222 INFO : Cleaning up temp tables

11 May 2020 16:18:41,640 INFO : Completed import of Skyline document from CPDR-FFPE-ID-241_2020-01-28_10-28-06.sky.zip

11 May 2020 16:18:41,642 INFO : 100% Done

11 May 2020 16:18:41,654 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80129/CPDR-FFPE-ID-241_2020-01-28_10-28-06.sky.zip into the system

11 May 2020 16:18:41,654 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80069/CPDR-FFPE-ID-167_seg1_2020-01-28_09-56-22/CPDR-FFPE-ID-167_seg1.skyd into the system

11 May 2020 16:18:41,656 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80069/CPDR-FFPE-ID-167_seg1_2020-01-28_09-56-22/CPDR-FFPE-ID-167_seg1.skyd into the system

11 May 2020 16:18:41,656 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80069/CPDR-FFPE-ID-167_seg1_2020-01-28_09-56-22.sky.zip into the system

11 May 2020 16:18:41,660 INFO : Starting import from CPDR-FFPE-ID-167_seg1_2020-01-28_09-56-22.sky.zip

11 May 2020 16:18:41,668 INFO : Starting to import Skyline document from CPDR-FFPE-ID-167_seg1_2020-01-28_09-56-22.sky.zip

11 May 2020 16:18:41,691 INFO : Expanding CPDR-FFPE-ID-167_seg1.skyd

11 May 2020 16:18:42,345 INFO : Expanding CPDR-FFPE-ID-167_seg1.sky.view

11 May 2020 16:18:42,346 INFO : Expanding CPDR-FFPE-ID-167_seg1.sky

11 May 2020 16:18:42,359 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:18:42,363 INFO : 3% Done

11 May 2020 16:18:42,879 INFO : Inserting ANXA2

11 May 2020 16:18:42,885 INFO : 10% Done

11 May 2020 16:18:43,064 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:43,064 INFO : Inserting CAMKK2

11 May 2020 16:18:43,068 INFO : 17% Done

11 May 2020 16:18:43,264 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:43,264 INFO : Inserting CCND1

11 May 2020 16:18:43,268 INFO : 23% Done

11 May 2020 16:18:43,444 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:43,445 INFO : Inserting EGFR

11 May 2020 16:18:43,449 INFO : 27% Done

11 May 2020 16:18:43,595 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:43,595 INFO : Inserting ERG_pan

11 May 2020 16:18:43,600 INFO : 34% Done

11 May 2020 16:18:43,816 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:43,816 INFO : Inserting FOLH1

11 May 2020 16:18:43,821 INFO : 41% Done

11 May 2020 16:18:44,017 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:44,017 INFO : Inserting MMP9

11 May 2020 16:18:44,022 INFO : 49% Done

11 May 2020 16:18:44,230 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:44,230 INFO : Inserting MUC1

11 May 2020 16:18:44,234 INFO : 55% Done

11 May 2020 16:18:44,405 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:44,405 INFO : Inserting NCOA2

11 May 2020 16:18:44,409 INFO : 60% Done

11 May 2020 16:18:44,549 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:44,549 INFO : Inserting PSA

11 May 2020 16:18:44,554 INFO : 66% Done

11 May 2020 16:18:44,751 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:44,751 INFO : Inserting SMAD4

11 May 2020 16:18:44,755 INFO : 70% Done

11 May 2020 16:18:44,875 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:44,875 INFO : Inserting SPINK1

11 May 2020 16:18:44,879 INFO : 75% Done

11 May 2020 16:18:45,035 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:45,035 INFO : Inserting SPRC

11 May 2020 16:18:45,039 INFO : 80% Done

11 May 2020 16:18:45,164 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:45,164 INFO : Inserting TFF3

11 May 2020 16:18:45,169 INFO : 86% Done

11 May 2020 16:18:45,365 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:45,365 INFO : Inserting TGFB1

11 May 2020 16:18:45,369 INFO : 91% Done

11 May 2020 16:18:45,514 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:45,514 INFO : Inserting VEGFA

11 May 2020 16:18:45,519 INFO : 98% Done

11 May 2020 16:18:45,731 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:45,731 INFO : Done parsing Skyline document.

11 May 2020 16:18:45,733 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:18:45,774 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:18:45,977 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:18:46,040 INFO : Cleaning up temp tables

11 May 2020 16:18:46,536 INFO : Completed import of Skyline document from CPDR-FFPE-ID-167_seg1_2020-01-28_09-56-22.sky.zip

11 May 2020 16:18:46,538 INFO : 100% Done

11 May 2020 16:18:46,550 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80069/CPDR-FFPE-ID-167_seg1_2020-01-28_09-56-22.sky.zip into the system

11 May 2020 16:18:46,551 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80071/CPDR-FFPE-ID-361_seg1_2020-01-28_09-57-09/CPDR-FFPE-ID-361_seg1.skyd into the system

11 May 2020 16:18:46,553 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80071/CPDR-FFPE-ID-361_seg1_2020-01-28_09-57-09/CPDR-FFPE-ID-361_seg1.skyd into the system

11 May 2020 16:18:46,553 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80071/CPDR-FFPE-ID-361_seg1_2020-01-28_09-57-09.sky.zip into the system

11 May 2020 16:18:46,557 INFO : Starting import from CPDR-FFPE-ID-361_seg1_2020-01-28_09-57-09.sky.zip

11 May 2020 16:18:46,565 INFO : Starting to import Skyline document from CPDR-FFPE-ID-361_seg1_2020-01-28_09-57-09.sky.zip

11 May 2020 16:18:46,586 INFO : Expanding CPDR-FFPE-ID-361_seg1.skyd

11 May 2020 16:18:47,240 INFO : Expanding CPDR-FFPE-ID-361_seg1.sky.view

11 May 2020 16:18:47,241 INFO : Expanding CPDR-FFPE-ID-361_seg1.sky

11 May 2020 16:18:47,253 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:18:47,256 INFO : 3% Done

11 May 2020 16:18:47,662 INFO : Inserting ANXA2

11 May 2020 16:18:47,666 INFO : 10% Done

11 May 2020 16:18:47,745 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:47,745 INFO : Inserting CAMKK2

11 May 2020 16:18:47,748 INFO : 16% Done

11 May 2020 16:18:47,825 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:47,825 INFO : Inserting CCND1

11 May 2020 16:18:47,827 INFO : 22% Done

11 May 2020 16:18:47,903 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:47,903 INFO : Inserting EGFR

11 May 2020 16:18:47,905 INFO : 26% Done

11 May 2020 16:18:47,970 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:47,970 INFO : Inserting ERG_pan

11 May 2020 16:18:47,972 INFO : 34% Done

11 May 2020 16:18:48,144 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:48,144 INFO : Inserting FOLH1

11 May 2020 16:18:48,149 INFO : 40% Done

11 May 2020 16:18:48,336 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:48,336 INFO : Inserting MMP9

11 May 2020 16:18:48,342 INFO : 48% Done

11 May 2020 16:18:48,582 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:48,582 INFO : Inserting MUC1

11 May 2020 16:18:48,587 INFO : 54% Done

11 May 2020 16:18:48,772 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:48,772 INFO : Inserting NCOA2

11 May 2020 16:18:48,776 INFO : 59% Done

11 May 2020 16:18:48,915 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:48,915 INFO : Inserting PSA

11 May 2020 16:18:48,920 INFO : 65% Done

11 May 2020 16:18:49,110 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:49,110 INFO : Inserting SMAD4

11 May 2020 16:18:49,114 INFO : 70% Done

11 May 2020 16:18:49,249 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:49,249 INFO : Inserting SPINK1

11 May 2020 16:18:49,254 INFO : 75% Done

11 May 2020 16:18:49,441 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:49,441 INFO : Inserting SPRC

11 May 2020 16:18:49,445 INFO : 80% Done

11 May 2020 16:18:49,607 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:49,607 INFO : Inserting TFF3

11 May 2020 16:18:49,613 INFO : 87% Done

11 May 2020 16:18:49,836 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:49,836 INFO : Inserting TGFB1

11 May 2020 16:18:49,840 INFO : 91% Done

11 May 2020 16:18:49,978 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:49,978 INFO : Inserting VEGFA

11 May 2020 16:18:49,984 INFO : 98% Done

11 May 2020 16:18:50,245 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:50,245 INFO : Done parsing Skyline document.

11 May 2020 16:18:50,248 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:18:50,288 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:18:50,464 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:18:50,529 INFO : Cleaning up temp tables

11 May 2020 16:18:50,979 INFO : Completed import of Skyline document from CPDR-FFPE-ID-361_seg1_2020-01-28_09-57-09.sky.zip

11 May 2020 16:18:50,981 INFO : 100% Done

11 May 2020 16:18:50,991 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80071/CPDR-FFPE-ID-361_seg1_2020-01-28_09-57-09.sky.zip into the system

11 May 2020 16:18:50,992 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80068/CPDR-FFPE-ID-159_seg1_2020-01-28_09-56-01/CPDR-FFPE-ID-159_seg1.skyd into the system

11 May 2020 16:18:50,993 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80068/CPDR-FFPE-ID-159_seg1_2020-01-28_09-56-01/CPDR-FFPE-ID-159_seg1.skyd into the system

11 May 2020 16:18:50,993 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80068/CPDR-FFPE-ID-159_seg1_2020-01-28_09-56-01.sky.zip into the system

11 May 2020 16:18:50,997 INFO : Starting import from CPDR-FFPE-ID-159_seg1_2020-01-28_09-56-01.sky.zip

11 May 2020 16:18:51,003 INFO : Starting to import Skyline document from CPDR-FFPE-ID-159_seg1_2020-01-28_09-56-01.sky.zip

11 May 2020 16:18:51,030 INFO : Expanding CPDR-FFPE-ID-159_seg1.skyd

11 May 2020 16:18:51,634 INFO : Expanding CPDR-FFPE-ID-159_seg1.sky.view

11 May 2020 16:18:51,635 INFO : Expanding CPDR-FFPE-ID-159_seg1.sky

11 May 2020 16:18:51,641 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:18:51,643 INFO : 3% Done

11 May 2020 16:18:51,977 INFO : Inserting ANXA2

11 May 2020 16:18:51,981 INFO : 10% Done

11 May 2020 16:18:52,119 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:52,119 INFO : Inserting CAMKK2

11 May 2020 16:18:52,124 INFO : 15% Done

11 May 2020 16:18:52,300 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:52,300 INFO : Inserting CCND1

11 May 2020 16:18:52,304 INFO : 21% Done

11 May 2020 16:18:52,473 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:52,474 INFO : Inserting EGFR

11 May 2020 16:18:52,479 INFO : 26% Done

11 May 2020 16:18:52,670 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:52,670 INFO : Inserting ERG_pan

11 May 2020 16:18:52,676 INFO : 34% Done

11 May 2020 16:18:52,934 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:52,934 INFO : Inserting FOLH1

11 May 2020 16:18:52,939 INFO : 40% Done

11 May 2020 16:18:53,124 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:53,124 INFO : Inserting MMP9

11 May 2020 16:18:53,130 INFO : 47% Done

11 May 2020 16:18:53,377 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:53,378 INFO : 48% Done

11 May 2020 16:18:53,378 INFO : Inserting MUC1

11 May 2020 16:18:53,382 INFO : 53% Done

11 May 2020 16:18:53,620 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:53,620 INFO : Inserting NCOA2

11 May 2020 16:18:53,624 INFO : 58% Done

11 May 2020 16:18:53,771 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:53,772 INFO : Inserting PSA

11 May 2020 16:18:53,776 INFO : 65% Done

11 May 2020 16:18:53,993 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:53,993 INFO : Inserting SMAD4

11 May 2020 16:18:54,000 INFO : 68% Done

11 May 2020 16:18:54,142 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:54,143 INFO : Inserting SPINK1

11 May 2020 16:18:54,152 INFO : 74% Done

11 May 2020 16:18:54,353 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:54,353 INFO : Inserting SPRC

11 May 2020 16:18:54,358 INFO : 79% Done

11 May 2020 16:18:54,514 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:54,514 INFO : Inserting TFF3

11 May 2020 16:18:54,520 INFO : 86% Done

11 May 2020 16:18:54,785 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:54,786 INFO : Inserting TGFB1

11 May 2020 16:18:54,790 INFO : 90% Done

11 May 2020 16:18:54,928 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:54,928 INFO : Inserting VEGFA

11 May 2020 16:18:54,934 INFO : 98% Done

11 May 2020 16:18:55,192 DEBUG: Total peptides inserted: 1

11 May 2020 16:18:55,193 INFO : Done parsing Skyline document.

11 May 2020 16:18:55,195 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:18:55,241 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:18:55,425 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:18:55,494 INFO : Cleaning up temp tables

11 May 2020 16:18:55,975 INFO : Completed import of Skyline document from CPDR-FFPE-ID-159_seg1_2020-01-28_09-56-01.sky.zip

11 May 2020 16:18:55,977 INFO : 100% Done

11 May 2020 16:18:55,989 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80068/CPDR-FFPE-ID-159_seg1_2020-01-28_09-56-01.sky.zip into the system

11 May 2020 16:18:56,828 INFO : Done importing xar

11 May 2020 16:18:56,854 INFO : Loading pages and webpart properties

11 May 2020 16:18:57,017 INFO : Done importing pages and webpart properties

11 May 2020 16:18:57,017 INFO : Done importing folder archive for Batch1_52_proteins

11 May 2020 16:18:57,349 INFO : New container created with inherited permissions for Batch2_16_proteins

11 May 2020 16:18:57,349 INFO : Loading folder archive for Batch2_16_proteins

11 May 2020 16:18:57,369 INFO : Loading folder properties (folder type, settings and active modules)

11 May 2020 16:18:57,494 INFO : Done importing folder properties (folder type, settings and active modules)

11 May 2020 16:18:57,499 INFO : Loading etl definitions

11 May 2020 16:18:57,504 INFO : Loading wikis

11 May 2020 16:18:57,534 INFO : 0 wikis imported

11 May 2020 16:18:57,534 INFO : Done importing wikis

11 May 2020 16:18:57,536 INFO : Starting to copy files

11 May 2020 16:20:57,595 INFO : 1061 files copied, now copying CPDR-FFPE-ID-1137.sky

11 May 2020 16:20:57,652 INFO : 1063 files copied, now copying CPDR-FFPE-ID-689.sky.view

11 May 2020 16:20:57,948 INFO : 1066 files copied, now copying CPDR-FFPE-ID-832.sky

11 May 2020 16:20:58,249 INFO : 1069 files copied, now copying CPDR-FFPE-ID-644.skyd

11 May 2020 16:20:58,468 INFO : 1072 files copied, now copying CPDR-FFPE-ID-765.skyd

11 May 2020 16:20:58,668 INFO : 1075 files copied, now copying CPDR-FFPE-ID-471.sky

11 May 2020 16:20:58,887 INFO : 1078 files copied, now copying CPDR-FFPE-ID-629.sky.view

11 May 2020 16:20:59,178 INFO : 1081 files copied, now copying CPDR-FFPE-ID-435.skyd

11 May 2020 16:20:59,531 INFO : 1084 files copied, now copying CPDR-FFPE-ID-537.skyd

11 May 2020 16:20:59,867 INFO : 1087 files copied, now copying CPDR-FFPE-ID-830.sky

11 May 2020 16:21:00,243 INFO : 1090 files copied, now copying CPDR-FFPE-ID-746.skyd

11 May 2020 16:21:00,500 INFO : 1093 files copied, now copying CPDR-FFPE-ID-1423.sky.view

11 May 2020 16:21:00,764 INFO : 1096 files copied, now copying CPDR-FFPE-ID-550.sky

11 May 2020 16:21:01,098 INFO : 1099 files copied, now copying CPDR-FFPE-ID-545.skyd

11 May 2020 16:21:01,259 INFO : 1102 files copied, now copying CPDR-FFPE-ID-837.sky.view

11 May 2020 16:21:01,504 INFO : 1105 files copied, now copying CPDR-FFPE-ID-750.sky

11 May 2020 16:21:01,765 INFO : 1108 files copied, now copying CPDR-FFPE-ID-1247.sky.view

11 May 2020 16:21:02,118 INFO : 1111 files copied, now copying CPDR-FFPE-ID-739.sky

11 May 2020 16:21:02,300 INFO : 1114 files copied, now copying CPDR-FFPE-ID-628.sky

11 May 2020 16:21:02,498 INFO : 1117 files copied, now copying CPDR-FFPE-ID-473.sky

11 May 2020 16:21:02,683 INFO : 1120 files copied, now copying CPDR-FFPE-ID-521.skyd

11 May 2020 16:21:02,916 INFO : 1123 files copied, now copying CPDR-FFPE-ID-754.sky.view

11 May 2020 16:21:03,111 INFO : 1126 files copied, now copying CPDR-FFPE-ID-835.sky.view

11 May 2020 16:21:03,387 INFO : 1129 files copied, now copying CPDR-FFPE-ID-541.sky

11 May 2020 16:21:03,624 INFO : 1132 files copied, now copying CPDR-FFPE-ID-810.sky

11 May 2020 16:21:03,884 INFO : 1135 files copied, now copying CPDR-FFPE-ID-492.skyd

11 May 2020 16:21:04,132 INFO : 1138 files copied, now copying CPDR-FFPE-ID-585.sky

11 May 2020 16:21:04,447 INFO : 1141 files copied, now copying CPDR-FFPE-ID-1552.sky.view

11 May 2020 16:21:04,767 INFO : 1144 files copied, now copying CPDR-FFPE-ID-727.sky

11 May 2020 16:21:04,955 INFO : 1147 files copied, now copying CPDR-FFPE-ID-391.sky

11 May 2020 16:21:05,137 INFO : 1150 files copied, now copying CPDR-FFPE-ID-490.sky.view

11 May 2020 16:21:05,305 INFO : 1153 files copied, now copying CPDR-FFPE-ID-711.sky.view

11 May 2020 16:21:05,592 INFO : 1156 files copied, now copying CPDR-FFPE-ID-1222.sky

11 May 2020 16:21:05,903 INFO : 1159 files copied, now copying CPDR-FFPE-ID-786.skyd

11 May 2020 16:21:06,226 INFO : 1162 files copied, now copying CPDR-FFPE-ID-1267.sky.view

11 May 2020 16:21:06,465 INFO : 1165 files copied, now copying CPDR-FFPE-ID-704.sky

11 May 2020 16:21:06,894 INFO : 1168 files copied, now copying CPDR-FFPE-ID-194.skyd

11 May 2020 16:21:07,179 INFO : 1171 files copied, now copying CPDR-FFPE-ID-616.skyd

11 May 2020 16:21:07,393 INFO : 1174 files copied, now copying CPDR-FFPE-ID-1544.skyd

11 May 2020 16:21:07,643 INFO : 1177 files copied, now copying CPDR-FFPE-ID-417.sky.view

11 May 2020 16:21:07,984 INFO : 1180 files copied, now copying CPDR-FFPE-ID-650.sky

11 May 2020 16:21:08,229 INFO : 1183 files copied, now copying CPDR-FFPE-ID-450.skyd

11 May 2020 16:21:08,452 INFO : 1186 files copied, now copying CPDR-FFPE-ID-415.sky.view

11 May 2020 16:21:08,815 INFO : 1189 files copied, now copying CPDR-FFPE-ID-855.skyd

11 May 2020 16:21:09,151 INFO : Copied 1192 files

11 May 2020 16:21:09,151 INFO : Ensuring exp.data rows exist for imported files

11 May 2020 16:21:31,877 INFO : Loading xar

11 May 2020 16:23:02,380 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:02,386 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:02,392 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:02,392 DEBUG: Protocol import complete

11 May 2020 16:23:02,427 DEBUG: Protocol action set import complete

11 May 2020 16:23:02,443 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:02,466 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:a098ce23-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:02,476 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:a098ce0b-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:02,476 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:02,483 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:02,484 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:a098ce6d-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:02,503 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:02,514 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:a098cf5e-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:02,525 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:a098cf2f-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:02,525 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:02,531 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:02,532 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:a098cfc3-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:02,556 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:02,568 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:a098cab3-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:02,579 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:a098caa1-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:02,579 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:02,584 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:02,586 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:a098cb23-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:02,596 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:02,608 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:a098da12-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:02,619 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:a098d9f4-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:02,619 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:02,639 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:02,640 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:a098da91-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:02,651 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:02,663 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:a098db4f-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:02,673 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:a098db39-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:02,673 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:02,679 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:02,681 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:a098db92-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:02,692 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:02,704 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:46019e0b-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:02,738 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:46019df7-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:02,738 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:02,743 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:02,745 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:46019e48-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:02,755 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:02,768 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:4601bd06-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:02,778 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:4601bbba-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:02,779 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:02,784 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:02,785 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:d2430eb9-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:02,795 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:02,807 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:6a3d97dd-245e-1038-b289-3013bb9ba57c'

11 May 2020 16:23:02,817 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:ecaf835b-244f-1038-b289-3013bb9ba57c'

11 May 2020 16:23:02,817 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:02,823 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:02,824 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:6a3d9881-245e-1038-b289-3013bb9ba57c'

11 May 2020 16:23:02,834 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:02,846 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:b9f530b4-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:02,856 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:b9f5309e-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:02,856 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:02,861 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:02,862 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:b9f53129-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:02,895 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:02,907 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:b9f53427-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:02,918 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:b9f53411-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:02,919 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:02,925 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:02,926 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:b9f53474-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:02,959 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:02,971 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:b9f534ec-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:02,985 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:b9f534d6-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:02,985 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:02,992 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:02,993 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:b9f5352b-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,005 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:03,018 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:18168788-242f-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,030 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:18168772-242f-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,030 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:03,035 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:03,037 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:181687dc-242f-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,048 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:03,061 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:f8dce19a-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,072 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:f8dce184-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,073 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:03,078 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:03,079 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:f8dce1e8-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,090 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:03,103 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:1816821d-242f-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,113 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:18168207-242f-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,113 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:03,119 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:03,120 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:18168276-242f-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,131 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:03,144 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:181683a5-242f-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,154 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:18168391-242f-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,154 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:03,159 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:03,160 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:181683f4-242f-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,170 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:03,197 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:18168494-242f-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,207 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:18168480-242f-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,207 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:03,213 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:03,215 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:181684e4-242f-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,226 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:03,239 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:a098cc4c-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,248 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:a098cc36-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,249 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:03,254 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:03,255 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:a098cc89-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,266 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:03,278 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:a098d381-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,288 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:a098d363-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,288 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:03,294 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:03,295 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:a098d3cd-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,305 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:03,317 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:a098d432-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,327 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:a098d41c-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,327 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:03,333 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:03,334 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:a098d47d-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,344 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:03,356 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:a098dd4c-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,366 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:a098dd36-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,366 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:03,372 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:03,373 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:a098dd92-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,384 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:03,397 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:a098e0e2-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,407 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:a098e0c6-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,407 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:03,413 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:03,414 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:a098e156-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,424 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:03,437 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:18168659-242f-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,448 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:18168635-242f-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,448 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:03,454 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:03,455 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:18168694-242f-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,466 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:03,479 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:18168919-242f-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,491 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:181688e9-242f-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,491 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:03,497 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:03,498 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:1816899f-242f-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,509 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:03,521 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:f8dce86c-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,532 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:f8dce856-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,532 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:03,537 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:03,539 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:f8dce8ad-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,550 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:03,562 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:18167e80-242f-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,572 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:18167e65-242f-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,573 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:03,578 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:03,579 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:18167ed7-242f-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,591 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:03,604 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:f8dcdc2a-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,615 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:f8dcdc12-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,615 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:03,621 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:03,623 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:f8dcdc7f-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,634 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:03,647 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:f8dcdd60-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,657 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:f8dcdd38-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,657 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:03,663 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:03,664 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:f8dcdda7-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,675 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:03,687 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:f8dcde4c-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,697 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:f8dcde36-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,697 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:03,702 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:03,703 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:f8dcde99-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,715 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:03,728 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:f8dcd96d-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,739 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:f8dcd959-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,740 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:03,745 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:03,747 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:f8dcd9d0-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,758 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:03,771 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:f8dce0aa-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,782 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:f8dce092-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,782 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:03,787 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:03,789 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:f8dce102-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,800 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:03,812 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:f8dce2d5-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,822 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:f8dce2bf-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,823 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:03,828 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:03,829 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:f8dce322-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,840 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:03,852 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:967bebc9-243d-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,863 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:967beb9b-243d-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,863 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:03,868 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:03,869 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:967bec37-243d-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,880 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:03,892 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7cec10ff-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,903 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7cec1049-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,903 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:03,908 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:03,909 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7cec115c-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,920 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:03,932 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7cec1847-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,942 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7cec1832-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,942 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:03,947 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:03,949 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7cec187d-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,959 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:03,971 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7cec06c5-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,982 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7cec06af-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:03,982 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:03,988 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:03,989 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7cec070e-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,001 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:04,015 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7cec0958-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,026 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7cec093e-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,027 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:04,033 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:04,034 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7cec099a-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,071 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:04,087 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7cec0bbc-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,097 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7cec0bab-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,097 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:04,102 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:04,103 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7cec0bea-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,114 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:04,126 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7cec0de6-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,136 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7cec0dd2-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,136 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:04,141 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:04,143 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7cec0e37-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,153 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:04,164 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7cec104b-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,174 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7cec1023-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,174 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:04,178 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:04,180 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7cec10dc-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,190 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:04,201 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7cec16f6-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,210 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7cec16e0-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,210 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:04,215 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:04,217 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7cec1738-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,226 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:04,238 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7cec1c4f-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,247 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7cec1c3c-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,247 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:04,253 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:04,254 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7cec1c87-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,265 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:04,277 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:a098c870-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,287 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:a098c853-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,287 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:04,293 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:04,294 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:a098c8cf-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,318 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:04,331 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:18167f6a-242f-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,341 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:18167f51-242f-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,341 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:04,347 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:04,348 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:18167fc0-242f-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,358 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:04,370 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:181682e6-242f-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,380 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:181682ce-242f-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,380 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:04,385 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:04,387 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:18168335-242f-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,397 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:04,409 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:18168584-242f-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,419 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:18168569-242f-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,419 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:04,424 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:04,425 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:181685cb-242f-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,435 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:04,446 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7cec0a16-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,456 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7cec09fd-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,456 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:04,461 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:04,462 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7cec0a5e-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,472 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:04,483 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7cec0ec0-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,493 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7cec0eac-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,493 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:04,498 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:04,499 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7cec0f19-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,509 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:04,520 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7cec1625-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,530 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7cec160f-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,530 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:04,535 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:04,536 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7cec1662-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,546 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:04,557 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7cec1dce-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,566 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7cec1dac-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,566 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:04,596 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:04,597 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7cec1df1-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,608 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:04,620 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:a098c393-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,631 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:a098c37d-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,631 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:04,636 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:04,638 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:a098c3d3-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,649 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:04,661 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:a098c46b-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,671 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:a098c455-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,671 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:04,676 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:04,677 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:a098c4c7-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,688 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:04,700 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:a098c607-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,710 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:a098c5f5-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,710 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:04,716 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:04,717 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:a098c65d-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,727 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:04,739 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:a098d1ff-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,748 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:a098d1e0-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,748 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:04,754 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:04,755 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:a098d247-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,765 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:04,777 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:f8dcda95-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,787 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:f8dcda81-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,788 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:04,793 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:04,794 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:f8dcdaf4-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,840 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:04,853 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:f8dcdf18-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,863 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:f8dcdefe-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,863 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:04,868 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:04,869 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:f8dcdf66-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,909 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:04,922 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:f8dce4ef-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,933 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:f8dce4d3-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,933 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:04,939 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:04,940 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:f8dce53b-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,951 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:04,963 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:f8dce6d1-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,973 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:f8dce6a9-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,973 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:04,978 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:04,979 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:f8dce725-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:04,989 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:05,001 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:f8dce7a5-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,011 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:f8dce78f-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,011 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:05,017 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:05,018 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:f8dce7e7-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,028 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:05,040 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7cec07b5-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,050 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7cec079d-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,050 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:05,055 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:05,057 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7cec0810-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,067 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:05,079 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7cec0879-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,089 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7cec0865-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,089 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:05,095 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:05,096 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7cec08b1-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,107 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:05,119 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7cec0b13-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,128 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7cec0b03-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,128 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:05,143 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:05,144 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7cec0b57-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,155 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:05,166 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7cec0d0a-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,176 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7cec0cf4-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,176 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:05,182 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:05,183 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7cec0d49-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,193 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:05,205 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7cec13ea-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,215 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7cec13d4-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,215 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:05,221 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:05,222 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7cec143f-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,232 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:05,244 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:a098d6cf-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,254 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:a098d6b9-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,254 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:05,260 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:05,261 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:a098d724-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,272 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:05,283 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:a098d79d-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,293 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:a098d787-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,293 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:05,298 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:05,300 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:a098d7ec-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,323 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:05,335 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:46019a3c-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,371 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:46019a27-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,371 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:05,376 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:05,377 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:46019a80-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,388 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:05,399 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:46019b8a-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,409 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:46019b76-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,409 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:05,422 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:05,424 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:46019bc3-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,435 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:05,447 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:46019eb3-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,456 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:46019e9f-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,456 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:05,462 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:05,463 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:46019ef3-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,474 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:05,486 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:f8dcdfe5-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,497 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:f8dcdfcf-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,497 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:05,503 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:05,505 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:f8dce021-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,518 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:05,532 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:f8dce5ea-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,543 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:f8dce5d2-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,543 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:05,549 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:05,550 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:f8dce642-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,562 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:05,574 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7cec153d-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,584 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7cec1529-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,585 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:05,590 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:05,591 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7cec1597-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,602 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:05,615 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7cec179f-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,625 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7cec178d-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,625 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:05,630 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:05,632 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7cec17cb-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,643 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:05,655 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7cec1b81-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,665 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7cec1b6a-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,665 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:05,670 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:05,671 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7cec1bb9-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,682 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:05,695 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:a098be60-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,706 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:a098be42-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,706 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:05,712 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:05,713 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:a098be97-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,725 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:05,739 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:a098c137-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,749 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:a098c121-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,749 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:05,755 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:05,756 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:a098c175-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,767 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:05,779 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:a098c1d1-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,790 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:a098c1b9-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,790 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:05,796 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:05,797 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:a098c228-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,808 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:05,820 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:a098c29a-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,831 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:a098c286-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,831 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:05,836 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:05,837 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:a098c2db-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,849 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:05,861 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:a098d0d6-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,884 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:a098d0bc-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,884 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:05,890 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:05,891 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:a098d154-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,902 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:05,914 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:a098d2c6-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,924 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:a098d2b4-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,925 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:05,930 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:05,931 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:a098d318-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,942 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:05,955 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:a098d869-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,966 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:a098d853-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,966 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:05,972 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:05,973 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:a098d8e8-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:05,985 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:05,997 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:a098e299-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,008 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:a098e27d-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,008 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:06,014 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:06,016 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:a098e2eb-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,028 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:06,044 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:f8dce3b5-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,055 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:f8dce39d-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,055 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:06,061 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:06,062 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:f8dce406-2430-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,074 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:06,087 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7cec1aa9-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,097 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7cec1a91-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,098 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:06,103 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:06,104 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7cec1ae4-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,115 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:06,126 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:a098bf22-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,145 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:a098bf10-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,145 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:06,150 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:06,152 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:a098bf54-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,162 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:06,174 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:a098bfba-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,196 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:a098bfa6-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,196 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:06,202 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:06,203 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:a098bff5-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,214 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:06,226 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:a098c05a-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,236 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:a098c03e-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,236 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:06,241 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:06,243 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:a098c0ad-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,253 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:06,265 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:a098dcac-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,275 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:a098dc98-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,276 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:06,281 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:06,282 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:a098dceb-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,293 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:06,304 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:46019c1e-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,314 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:46019c0a-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,315 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:06,320 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:06,321 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:46019c5f-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,332 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:06,344 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:46019cc7-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,355 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:46019cad-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,355 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:06,360 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:06,361 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:46019cff-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,374 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:06,408 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:46019d59-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,418 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:46019d45-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,418 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:06,424 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:06,425 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:46019d99-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,436 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:06,448 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7cec0c5e-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,458 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7cec0c4e-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,458 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:06,463 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:06,464 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7cec0c86-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,475 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:06,487 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:a098c53e-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,497 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:a098c525-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,497 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:06,511 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:06,513 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:a098c593-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,524 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:06,536 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:a098c737-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,546 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:a098c723-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,546 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:06,551 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:06,552 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:a098c769-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,563 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:06,576 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:a098c9a2-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,586 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:a098c98f-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,586 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:06,592 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:06,593 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:a098ca01-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,604 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:06,615 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7c8b2005-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,625 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7c8b1fec-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,625 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:06,631 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:06,632 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7c8b204e-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,642 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:06,654 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7c8b28cb-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,664 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7c8b28b2-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,664 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:06,670 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:06,671 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7c8b291b-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,682 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:06,694 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7c8b2a4a-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,704 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7c8b2a32-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,704 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:06,710 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:06,711 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7c8b2a92-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,721 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:06,733 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7c8b3a60-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,743 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7c8b3a46-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,743 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:06,749 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:06,750 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7c8b3ac2-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,760 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:06,772 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7c8b3e0b-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,781 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7c8b3df9-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,781 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:06,787 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:06,788 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7c8b3e48-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,818 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:06,830 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:9f6a3412-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,841 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:9f6a33fc-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,841 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:06,846 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:06,847 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:9f6a3468-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,858 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:06,871 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:9f6a3a84-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,881 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:9f6a3a6c-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,882 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:06,887 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:06,888 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:9f6a3acb-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,900 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:06,912 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:9f6a3e4c-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,922 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:9f6a3e36-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,922 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:06,928 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:06,929 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:9f6a3eac-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,941 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:06,963 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:9f6a3fa8-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,973 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:9f6a3f94-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,973 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:06,979 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:06,980 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:9f6a3fed-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:06,991 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:07,003 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:9f6a4d67-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,013 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:9f6a4d4f-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,014 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:07,019 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:07,021 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:9f6a4dac-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,032 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:07,045 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:9f6a4e19-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,055 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:9f6a4e03-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,055 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:07,060 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:07,062 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:9f6a4e58-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,073 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:07,084 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7cec190e-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,095 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7cec18fe-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,095 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:07,100 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:07,101 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7cec194e-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,113 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:07,125 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7cec19e5-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,135 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7cec19d3-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,135 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:07,141 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:07,142 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7cec1a18-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,154 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:07,165 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7cec1d13-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,175 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7cec1d01-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,175 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:07,266 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:07,267 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7cec1d3f-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,279 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:07,297 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7cec1e47-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,307 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7cec1e35-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,307 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:07,313 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:07,314 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:a098bd58-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,326 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:07,338 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:a098bdc4-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,348 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:a098bdb2-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,349 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:07,354 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:07,355 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:a098bdfe-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,367 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:07,379 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:a098deae-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,389 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:a098de96-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,389 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:07,395 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:07,396 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:a098defd-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,407 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:07,420 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:a098df53-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,430 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:a098df3f-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,430 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:07,435 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:07,436 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:a098df96-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,448 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:07,460 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:46019988-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,470 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:46019975-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,470 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:07,476 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:07,477 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:460199c2-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,488 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:07,501 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:46019af2-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,511 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:46019ade-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,511 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:07,516 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:07,518 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:46019b2c-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,529 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:07,541 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:4601a180-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,551 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:4601a16a-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,551 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:07,557 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:07,558 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:4601a1d0-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,569 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:07,582 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:a098e3e6-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,592 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:a098e3d2-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,592 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:07,597 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:07,599 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:a098e427-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,613 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:07,645 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:46019f8d-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,677 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:46019f79-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,677 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:07,684 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:07,686 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:46019fce-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,704 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:07,719 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:0a654366-244d-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,729 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:d243177a-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,729 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:07,735 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:07,737 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:0a6543c2-244d-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,750 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:07,765 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:4601a026-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,776 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:4601a011-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,776 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:07,782 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:07,784 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:4601a068-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,796 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:07,809 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:4601a2fa-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,820 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:4601a2dd-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,820 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:07,826 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:07,827 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:4601a338-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,839 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:07,852 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:4601a3d8-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,875 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:4601a3c4-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,875 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:07,880 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:07,882 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:4601a43b-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,894 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:07,907 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:4601a0ca-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,918 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:4601a0b4-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,918 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:07,924 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:07,925 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:4601a110-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,937 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:07,948 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:b9f53952-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,958 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:b9f5393e-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,959 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:07,964 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:07,965 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:b9f539ad-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,976 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:07,988 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:b9f53c8e-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,998 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:b9f53c7a-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:07,999 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:08,004 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:08,005 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:b9f53cce-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,018 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:08,032 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:b9f53e12-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,043 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:b9f53df9-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,043 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:08,049 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:08,051 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:b9f53e77-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,062 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:08,074 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7c8b1dbc-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,085 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7c8b1da0-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,085 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:08,091 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:08,092 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7c8b1e07-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,105 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:08,118 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7c8b2231-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,129 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7c8b221b-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,129 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:08,135 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:08,137 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7c8b2278-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,157 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:08,175 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7c8b22da-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,186 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7c8b22c4-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,186 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:08,191 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:08,193 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7c8b2348-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,205 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:08,218 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7c8b2b1d-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,228 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7c8b2b07-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,228 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:08,234 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:08,235 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7c8b2b66-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,247 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:08,259 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7c8b2cd1-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,270 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7c8b2cbf-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,270 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:08,275 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:08,277 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7c8b2d09-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,289 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:08,303 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7c8b2f2a-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,314 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7c8b2f06-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,314 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:08,320 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:08,321 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7c8b2f8b-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,333 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:08,346 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7c8b3d05-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,357 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7c8b3cef-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,357 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:08,362 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:08,364 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7c8b3d38-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,375 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:08,387 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:6a3d9708-245e-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,397 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:ecaf8094-244f-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,398 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:08,403 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:08,404 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:6a3d979a-245e-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,415 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:08,428 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:b9f53196-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,438 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:b9f53180-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,438 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:08,443 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:08,445 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:b9f531ee-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,496 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:08,508 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:b9f53599-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,518 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:b9f53585-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,518 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:08,523 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:08,524 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:b9f535dc-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,535 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:08,548 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:b9f53660-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,558 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:b9f5364a-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,558 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:08,563 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:08,564 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:b9f536b1-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,576 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:08,588 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:b9f53876-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,597 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:b9f53860-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,598 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:08,603 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:08,604 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:b9f538da-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,615 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:08,627 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:b9f53a2e-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,637 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:b9f53a1a-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,637 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:08,642 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:08,644 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:b9f53a6f-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,655 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:08,667 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:b9f53bcc-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,677 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:b9f53bb8-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,677 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:08,682 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:08,684 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:b9f53c33-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,695 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:08,707 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:b9f53d30-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,736 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:b9f53d1c-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,736 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:08,741 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:08,742 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:b9f53d7c-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,753 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:08,766 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7c8b1ced-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,775 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7c8b1cd7-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,776 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:08,781 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:08,782 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7c8b1d25-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,793 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:08,805 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7c8b1e77-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,815 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7c8b1e61-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,815 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:08,821 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:08,822 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7c8b1ec3-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,833 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:08,845 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7c8b1f2d-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,855 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7c8b1f15-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,855 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:08,860 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:08,862 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7c8b1f87-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,873 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:08,893 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7c8b20b4-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,903 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7c8b209a-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,903 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:08,908 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:08,909 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7c8b2104-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,921 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:08,932 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7c8b217c-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,942 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7c8b2162-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,942 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:08,948 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:08,949 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7c8b21cb-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,960 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:08,972 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7c8b24a0-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,983 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7c8b2484-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:08,984 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:08,991 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:08,993 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7c8b2521-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,010 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:09,028 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:b9f5325f-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,039 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:b9f53246-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,039 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:09,044 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:09,046 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:b9f532c8-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,057 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:09,069 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:b9f5335e-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,079 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:b9f53337-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,079 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:09,084 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:09,086 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:b9f533b9-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,097 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:09,109 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:b9f53ae6-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,119 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:b9f53ad1-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,119 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:09,124 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:09,126 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:b9f53b1f-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,137 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:09,149 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7c8b23cd-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,159 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7c8b23b9-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,159 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:09,165 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:09,166 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7c8b2417-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,177 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:09,189 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7c8b2d7b-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,199 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7c8b2d69-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,199 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:09,204 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:09,206 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7c8b2db7-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,217 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:09,229 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7c8b2e3a-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,239 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7c8b2e24-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,239 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:09,244 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:09,245 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7c8b2e85-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,257 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:09,268 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7c8b30de-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,278 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7c8b30c8-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,279 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:09,284 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:09,285 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7c8b313c-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,296 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:09,308 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7c8b33d6-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,318 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7c8b33bf-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,318 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:09,338 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:09,339 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7c8b3429-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,350 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:09,363 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7c8b37b0-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,373 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7c8b3797-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,373 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:09,378 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:09,380 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7c8b3811-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,391 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:09,403 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:9f6a3b40-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,412 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:9f6a3b25-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,413 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:09,418 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:09,419 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:9f6a3b8e-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,443 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:09,455 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:9f6a4fb2-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,465 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:9f6a4f9b-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,465 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:09,470 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:09,472 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:9f6a5006-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,483 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:09,495 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:9f6a5075-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,504 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:9f6a5057-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,505 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:09,510 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:09,511 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:9f6a50c2-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,539 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:09,565 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:9f6a5139-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,575 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:9f6a5123-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,575 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:09,581 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:09,582 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:9f6a5185-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,594 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:09,606 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:b9f53716-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,616 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:b9f536fe-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,616 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:09,621 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:09,622 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:b9f5375f-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,633 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:09,645 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:b9f537c8-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,655 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:b9f537b2-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,655 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:09,661 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:09,662 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:b9f53810-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,674 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:09,686 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:b9f53ef1-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,696 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:b9f53edb-24fd-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,696 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:09,701 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:09,702 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7c8b1a36-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,713 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:09,725 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7c8b1a92-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,735 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7c8b1a80-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,735 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:09,741 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:09,742 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7c8b1ad4-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,753 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:09,765 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7c8b1b31-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,775 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7c8b1b1a-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,775 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:09,780 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:09,782 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7c8b1b89-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,793 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:09,805 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7c8b1be9-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,815 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7c8b1bd3-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,815 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:09,820 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:09,822 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7c8b1c3f-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,833 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:09,845 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:a9be1ab6-2514-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,855 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:a9be1a9e-2514-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,855 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:09,860 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:09,861 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:a9be1b11-2514-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,873 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:09,884 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:a9be1cc0-2514-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,894 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:a9be1caa-2514-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,894 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:09,902 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:09,904 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:a9be1d29-2514-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,921 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:09,935 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:283bb237-2517-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,945 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:283bb221-2517-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,945 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:09,950 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:09,952 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:283bb2b1-2517-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,963 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:09,975 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:283bc5e8-2517-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,985 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:283bc5d4-2517-1038-b289-3013bb9ba57c'

11 May 2020 16:23:09,985 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:09,990 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:09,992 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:283bc636-2517-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,003 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:10,015 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7c8b25a2-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,025 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7c8b2583-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,025 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:10,030 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:10,032 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7c8b25f6-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,043 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:10,055 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7c8b300c-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,065 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7c8b2ff2-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,065 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:10,071 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:10,072 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7c8b306e-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,083 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:10,096 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7c8b31c8-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,106 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7c8b31af-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,106 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:10,112 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:10,113 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7c8b3216-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,125 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:10,137 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7c8b332e-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,147 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7c8b331c-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,147 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:10,152 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:10,153 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7c8b335f-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,164 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:10,176 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7c8b38a4-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,186 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7c8b388c-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,186 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:10,192 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:10,193 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7c8b38fd-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,204 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:10,216 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7c8b3c2e-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,228 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7c8b3c16-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,228 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:10,235 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:10,237 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7c8b3c88-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,249 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:10,261 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:9f6a2ffd-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,271 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:9f6a2fd9-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,271 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:10,276 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:10,277 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:9f6a3041-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,289 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:10,301 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:9f6a3760-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,310 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:9f6a3748-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,311 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:10,316 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:10,317 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:9f6a37a4-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,330 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:10,342 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:9f6a39a1-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,352 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:9f6a398b-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,353 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:10,358 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:10,359 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:9f6a39e5-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,370 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:10,382 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:9f6a4bc9-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,392 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:9f6a4bb0-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,392 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:10,398 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:10,399 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:9f6a4c20-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,410 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:10,422 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:9f6a4cae-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,432 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:9f6a4c97-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,432 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:10,437 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:10,439 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:9f6a4cf7-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,450 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:10,462 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:9f6a4eec-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,472 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:9f6a4ed4-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,473 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:10,478 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:10,479 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:9f6a4f37-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,490 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:10,502 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7c8b2682-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,512 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7c8b266a-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,513 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:10,518 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:10,519 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7c8b26d4-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,531 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:10,543 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7c8b2747-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,553 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7c8b272f-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,553 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:10,559 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:10,560 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7c8b278c-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,571 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:10,583 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7c8b281d-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,594 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7c8b2805-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,594 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:10,599 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:10,601 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7c8b285a-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,612 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:10,624 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7c8b36e1-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,634 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7c8b36cc-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,634 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:10,639 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:10,640 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7c8b3718-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,652 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:10,664 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7c8b3b4c-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,674 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7c8b3b2b-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,674 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:10,679 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:10,681 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7c8b3baa-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,692 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:10,704 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:9f6a3688-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,714 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:9f6a3659-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,714 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:10,720 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:10,721 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:9f6a36f8-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,732 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:10,744 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:9f6a381d-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,754 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:9f6a3807-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,754 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:10,759 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:10,761 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:9f6a3869-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,772 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:10,784 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:9f6a38de-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,794 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:9f6a38c8-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,794 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:10,799 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:10,801 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:9f6a3920-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,812 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:10,824 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:9f6a3bf3-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,834 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:9f6a3bd1-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,834 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:10,839 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:10,841 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:9f6a3c3e-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,852 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:10,864 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:9f6a3cc0-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,874 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:9f6a3caa-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,874 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:10,879 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:10,881 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:9f6a3d03-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,892 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:10,904 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:9f6a3f16-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,914 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:9f6a3f04-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,914 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:10,919 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:10,920 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:9f6a3f4c-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,932 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:10,944 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:9f6a4045-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,954 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:9f6a4031-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,954 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:10,959 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:10,960 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:9f6a40c7-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,972 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:10,984 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:9f6a42bb-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,994 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:9f6a42a5-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:10,994 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:11,000 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:11,001 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:9f6a4302-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,012 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:11,025 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:9f6a4a28-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,034 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:9f6a4a12-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,035 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:11,040 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:11,041 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:9f6a4a63-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,053 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:11,065 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7c8b297d-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,075 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7c8b2964-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,076 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:11,081 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:11,082 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7c8b29c8-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,094 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:11,106 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7c8b327c-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,115 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7c8b326a-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,116 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:11,121 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:11,122 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7c8b32ca-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,134 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:11,146 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7c8b399e-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,155 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7c8b3986-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,156 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:11,161 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:11,162 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7c8b39de-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,173 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:11,185 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7c8b3eaf-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,195 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7c8b3e99-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,195 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:11,201 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:11,202 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7c8b3efa-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,213 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:11,248 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7c8b4088-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,258 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7c8b406b-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,258 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:11,264 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:11,265 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7c8b40f1-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,277 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:11,289 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:9f6a30b8-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,299 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:9f6a30a2-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,299 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:11,306 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:11,307 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:9f6a30fb-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,319 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:11,331 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:9f6a3194-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,341 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:9f6a317b-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,341 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:11,346 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:11,348 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:9f6a31e1-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,359 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:11,371 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:9f6a3255-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,381 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:9f6a323f-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,381 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:11,387 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:11,388 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:9f6a32af-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,400 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:11,412 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7c8b3fa8-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,435 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7c8b3f87-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,435 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:11,440 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:11,442 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7c8b4007-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,453 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:11,465 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:9f6a335e-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,475 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:9f6a3348-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,475 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:11,481 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:11,482 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:9f6a33b0-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,494 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:11,506 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:9f6a34df-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,516 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:9f6a34c9-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,516 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:11,521 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:11,523 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:9f6a3529-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,535 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:11,547 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:9f6a3597-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,557 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:9f6a3585-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,557 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:11,562 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:11,564 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:9f6a35e8-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,586 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:11,599 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:9f6a3d85-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,609 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:9f6a3d6d-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,609 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:11,614 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:11,615 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:9f6a3de0-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,627 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:11,639 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:9f6a4134-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,649 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:9f6a4119-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,649 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:11,655 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:11,656 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:9f6a4196-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,668 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:11,680 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:9f6a4201-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,690 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:9f6a41ea-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,690 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:11,696 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:11,697 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:9f6a4246-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,724 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:11,736 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:9f6a4396-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,746 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:9f6a436f-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,746 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:11,751 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:11,752 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:9f6a440b-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,764 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:11,776 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:9f6a4581-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,786 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:9f6a455c-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,786 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:11,791 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:11,792 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:9f6a45f3-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,804 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:11,909 WARN : Unrecognized CpasType 'urn:lsid:uw.edu:.Folder-6398:' loaded for Data object.

11 May 2020 16:23:11,921 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:d380bd7f-2512-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,921 WARN : Unrecognized CpasType 'urn:lsid:uw.edu:.Folder-6398:' loaded for Data object.

11 May 2020 16:23:11,932 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:f390b55c-250d-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,932 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:11,938 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:11,940 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:d380bdda-2512-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,953 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:11,966 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:a9be0893-2514-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,975 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:a9be087d-2514-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,975 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:11,981 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:11,982 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:a9be0934-2514-1038-b289-3013bb9ba57c'

11 May 2020 16:23:11,993 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:12,006 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:f25b9862-2516-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,016 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:f25b984a-2516-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,016 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:12,021 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:12,022 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:f25b98b9-2516-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,034 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:12,046 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:f25b99b2-2516-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,056 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:f25b999e-2516-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,057 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:12,062 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:12,063 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:f25b9a12-2516-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,075 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:12,087 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:283bcc09-2517-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,097 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:283bcbf3-2517-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,098 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:12,103 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:12,104 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:283bcc52-2517-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,116 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:12,128 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:e81b3a5d-2517-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,139 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:e81b3a41-2517-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,139 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:12,144 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:12,145 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:e81b3ab4-2517-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,157 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:12,169 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:a9be190e-2514-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,179 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:a9be18f8-2514-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,179 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:12,184 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:12,186 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:a9be1977-2514-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,197 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:12,209 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:283bc8e4-2517-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,219 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:283bc8c0-2517-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,219 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:12,224 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:12,226 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:283bc941-2517-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,238 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:12,249 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:e81b4206-2517-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,259 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:e81b41f0-2517-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,259 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:12,265 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:12,266 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:e81b4264-2517-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,278 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:12,290 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:1816804b-242f-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,299 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:18168033-242f-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,300 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:12,305 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:12,306 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:181680a0-242f-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,332 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:12,344 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:1816813d-242f-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,354 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:18168113-242f-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,354 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:12,360 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:12,361 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:18168185-242f-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,373 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:12,385 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7cec0f8e-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,395 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7cec0f7a-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,395 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:12,400 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:12,401 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7cec0fc5-2441-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,429 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:12,441 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:a098dbfb-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,451 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:a098dbe9-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,451 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:12,456 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:12,458 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:a098dc33-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,470 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:12,482 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:a098e009-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,492 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:a098dff1-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,492 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:12,497 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:12,498 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:a098e04d-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,510 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:12,522 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:a098e1b4-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,532 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:a098e19a-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,532 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:12,537 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:12,539 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:a098e22a-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,551 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:12,563 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:4601a231-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,573 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:4601a21f-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,573 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:12,578 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:12,579 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:4601a26b-2445-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,591 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:12,603 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:7c8b2bf6-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,613 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:7c8b2be4-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,613 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:12,619 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:12,620 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:7c8b2c22-2502-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,632 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:12,644 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:a098ddf1-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,654 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:a098dddb-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,654 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:12,659 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:12,660 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:a098de3b-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,672 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:12,684 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:a098e345-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,694 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:a098e32d-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,695 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:12,714 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:12,715 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:a098e392-2443-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,727 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:12,739 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:9f6a4499-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,749 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:9f6a4483-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,749 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:12,755 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:12,756 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:9f6a44eb-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,768 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:12,780 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:e81b3f3f-2517-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,807 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:e81b3f15-2517-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,807 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:12,813 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:12,814 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:e81b3f92-2517-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,828 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:12,841 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:9f6a467a-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,851 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:9f6a4662-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,851 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:12,856 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:12,857 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:9f6a46d1-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,869 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:12,881 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:9f6a475c-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,891 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:9f6a4746-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,891 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:12,897 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:12,898 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:9f6a47ad-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,910 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip'

11 May 2020 16:23:12,922 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6995:9f6a4b0d-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,932 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6995:9f6a4af5-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,932 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:23:12,937 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6995:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:23:12,939 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6995:9f6a4b67-2504-1038-b289-3013bb9ba57c'

11 May 2020 16:23:12,943 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80265/CPDR-FFPE-ID-734_2020-01-28_13-36-22/CPDR-FFPE-ID-734.skyd into the system

11 May 2020 16:23:12,945 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80265/CPDR-FFPE-ID-734_2020-01-28_13-36-22/CPDR-FFPE-ID-734.skyd into the system

11 May 2020 16:23:12,945 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80265/CPDR-FFPE-ID-734_2020-01-28_13-36-22.sky.zip into the system

11 May 2020 16:23:12,949 INFO : Starting import from CPDR-FFPE-ID-734_2020-01-28_13-36-22.sky.zip

11 May 2020 16:23:12,966 INFO : Starting to import Skyline document from CPDR-FFPE-ID-734_2020-01-28_13-36-22.sky.zip

11 May 2020 16:23:12,973 INFO : Expanding CPDR-FFPE-ID-734.skyd

11 May 2020 16:23:13,185 INFO : Expanding CPDR-FFPE-ID-734.sky.view

11 May 2020 16:23:13,186 INFO : Expanding CPDR-FFPE-ID-734.sky

11 May 2020 16:23:13,194 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:23:13,197 INFO : 5% Done

11 May 2020 16:23:13,318 INFO : Inserting ANXA2

11 May 2020 16:23:13,326 INFO : 15% Done

11 May 2020 16:23:13,547 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:13,547 INFO : Inserting CAMKK2

11 May 2020 16:23:13,569 INFO : 23% Done

11 May 2020 16:23:13,692 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:13,692 INFO : Inserting CCND1

11 May 2020 16:23:13,696 INFO : 30% Done

11 May 2020 16:23:13,844 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:13,844 INFO : Inserting EGFR

11 May 2020 16:23:13,847 INFO : 34% Done

11 May 2020 16:23:13,923 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:13,923 INFO : Inserting ERG_pan

11 May 2020 16:23:13,925 INFO : 39% Done

11 May 2020 16:23:13,992 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:13,993 INFO : Inserting FOLH1

11 May 2020 16:23:13,995 INFO : 42% Done

11 May 2020 16:23:14,048 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:14,048 INFO : Inserting MMP9

11 May 2020 16:23:14,051 INFO : 47% Done

11 May 2020 16:23:14,121 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:14,121 INFO : Inserting MUC1

11 May 2020 16:23:14,123 INFO : 52% Done

11 May 2020 16:23:14,195 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:14,195 INFO : Inserting NCOA2

11 May 2020 16:23:14,198 INFO : 58% Done

11 May 2020 16:23:14,298 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:14,298 INFO : Inserting PSA

11 May 2020 16:23:14,301 INFO : 63% Done

11 May 2020 16:23:14,385 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:14,385 INFO : 64% Done

11 May 2020 16:23:14,386 INFO : Inserting SMAD4

11 May 2020 16:23:14,388 INFO : 69% Done

11 May 2020 16:23:14,470 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:14,470 INFO : Inserting SPINK1

11 May 2020 16:23:14,473 INFO : 75% Done

11 May 2020 16:23:14,579 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:14,580 INFO : Inserting SPRC

11 May 2020 16:23:14,582 INFO : 82% Done

11 May 2020 16:23:14,693 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:14,693 INFO : Inserting TFF3

11 May 2020 16:23:14,696 INFO : 87% Done

11 May 2020 16:23:14,785 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:14,785 INFO : 89% Done

11 May 2020 16:23:14,785 INFO : Inserting TGFB1

11 May 2020 16:23:14,788 INFO : 91% Done

11 May 2020 16:23:14,837 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:14,837 INFO : Inserting VEGFA

11 May 2020 16:23:14,840 INFO : 98% Done

11 May 2020 16:23:14,957 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:14,957 INFO : Done parsing Skyline document.

11 May 2020 16:23:14,960 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:23:14,990 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:23:15,059 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:23:15,087 INFO : Cleaning up temp tables

11 May 2020 16:23:15,103 INFO : Completed import of Skyline document from CPDR-FFPE-ID-734_2020-01-28_13-36-22.sky.zip

11 May 2020 16:23:15,105 INFO : 100% Done

11 May 2020 16:23:15,117 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80265/CPDR-FFPE-ID-734_2020-01-28_13-36-22.sky.zip into the system

11 May 2020 16:23:15,117 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80266/CPDR-FFPE-ID-682_2020-01-28_13-36-31/CPDR-FFPE-ID-682.skyd into the system

11 May 2020 16:23:15,118 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80266/CPDR-FFPE-ID-682_2020-01-28_13-36-31/CPDR-FFPE-ID-682.skyd into the system

11 May 2020 16:23:15,118 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80266/CPDR-FFPE-ID-682_2020-01-28_13-36-31.sky.zip into the system

11 May 2020 16:23:15,122 INFO : Starting import from CPDR-FFPE-ID-682_2020-01-28_13-36-31.sky.zip

11 May 2020 16:23:15,128 INFO : Starting to import Skyline document from CPDR-FFPE-ID-682_2020-01-28_13-36-31.sky.zip

11 May 2020 16:23:15,139 INFO : Expanding CPDR-FFPE-ID-682.skyd

11 May 2020 16:23:15,381 INFO : Expanding CPDR-FFPE-ID-682.sky.view

11 May 2020 16:23:15,382 INFO : Expanding CPDR-FFPE-ID-682.sky

11 May 2020 16:23:15,391 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:23:15,394 INFO : 6% Done

11 May 2020 16:23:15,537 INFO : Inserting ANXA2

11 May 2020 16:23:15,545 INFO : 13% Done

11 May 2020 16:23:15,630 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:15,631 INFO : Inserting CAMKK2

11 May 2020 16:23:15,633 INFO : 19% Done

11 May 2020 16:23:15,712 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:15,712 INFO : Inserting CCND1

11 May 2020 16:23:15,716 INFO : 28% Done

11 May 2020 16:23:15,839 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:15,839 INFO : Inserting EGFR

11 May 2020 16:23:15,841 INFO : 31% Done

11 May 2020 16:23:15,892 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:15,892 INFO : Inserting ERG_pan

11 May 2020 16:23:15,895 INFO : 37% Done

11 May 2020 16:23:15,973 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:15,973 INFO : Inserting FOLH1

11 May 2020 16:23:15,975 INFO : 39% Done

11 May 2020 16:23:16,013 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:16,013 INFO : Inserting MMP9

11 May 2020 16:23:16,016 INFO : 45% Done

11 May 2020 16:23:16,102 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:16,102 INFO : Inserting MUC1

11 May 2020 16:23:16,105 INFO : 48% Done

11 May 2020 16:23:16,164 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:16,165 INFO : Inserting NCOA2

11 May 2020 16:23:16,168 INFO : 55% Done

11 May 2020 16:23:16,273 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:16,273 INFO : Inserting PSA

11 May 2020 16:23:16,276 INFO : 62% Done

11 May 2020 16:23:16,386 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:16,386 INFO : 63% Done

11 May 2020 16:23:16,386 INFO : Inserting SMAD4

11 May 2020 16:23:16,389 INFO : 67% Done

11 May 2020 16:23:16,456 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:16,456 INFO : 68% Done

11 May 2020 16:23:16,456 INFO : Inserting SPINK1

11 May 2020 16:23:16,459 INFO : 74% Done

11 May 2020 16:23:16,570 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:16,570 INFO : Inserting SPRC

11 May 2020 16:23:16,574 INFO : 80% Done

11 May 2020 16:23:16,676 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:16,676 INFO : Inserting TFF3

11 May 2020 16:23:16,679 INFO : 87% Done

11 May 2020 16:23:16,779 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:16,779 INFO : 88% Done

11 May 2020 16:23:16,779 INFO : Inserting TGFB1

11 May 2020 16:23:16,781 INFO : 92% Done

11 May 2020 16:23:16,837 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:16,837 INFO : Inserting VEGFA

11 May 2020 16:23:16,840 INFO : 98% Done

11 May 2020 16:23:16,940 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:16,940 INFO : Done parsing Skyline document.

11 May 2020 16:23:16,942 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:23:16,972 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:23:17,038 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:23:17,063 INFO : Cleaning up temp tables

11 May 2020 16:23:17,077 INFO : Completed import of Skyline document from CPDR-FFPE-ID-682_2020-01-28_13-36-31.sky.zip

11 May 2020 16:23:17,079 INFO : 100% Done

11 May 2020 16:23:17,095 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80266/CPDR-FFPE-ID-682_2020-01-28_13-36-31.sky.zip into the system

11 May 2020 16:23:17,095 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80263/CPDR-FFPE-ID-576_2020-01-28_13-36-02/CPDR-FFPE-ID-576.skyd into the system

11 May 2020 16:23:17,096 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80263/CPDR-FFPE-ID-576_2020-01-28_13-36-02/CPDR-FFPE-ID-576.skyd into the system

11 May 2020 16:23:17,096 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80263/CPDR-FFPE-ID-576_2020-01-28_13-36-02.sky.zip into the system

11 May 2020 16:23:17,101 INFO : Starting import from CPDR-FFPE-ID-576_2020-01-28_13-36-02.sky.zip

11 May 2020 16:23:17,108 INFO : Starting to import Skyline document from CPDR-FFPE-ID-576_2020-01-28_13-36-02.sky.zip

11 May 2020 16:23:17,113 INFO : Expanding CPDR-FFPE-ID-576.skyd

11 May 2020 16:23:17,259 INFO : Expanding CPDR-FFPE-ID-576.sky.view

11 May 2020 16:23:17,260 INFO : Expanding CPDR-FFPE-ID-576.sky

11 May 2020 16:23:17,268 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:23:17,270 INFO : 5% Done

11 May 2020 16:23:17,395 INFO : Inserting ANXA2

11 May 2020 16:23:17,402 INFO : 14% Done

11 May 2020 16:23:17,485 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:17,485 INFO : Inserting CAMKK2

11 May 2020 16:23:17,487 INFO : 21% Done

11 May 2020 16:23:17,559 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:17,559 INFO : Inserting CCND1

11 May 2020 16:23:17,562 INFO : 28% Done

11 May 2020 16:23:17,641 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:17,641 INFO : Inserting EGFR

11 May 2020 16:23:17,643 INFO : 33% Done

11 May 2020 16:23:17,696 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:17,697 INFO : Inserting ERG_pan

11 May 2020 16:23:17,699 INFO : 39% Done

11 May 2020 16:23:17,764 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:17,765 INFO : Inserting FOLH1

11 May 2020 16:23:17,766 INFO : 42% Done

11 May 2020 16:23:17,809 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:17,809 INFO : Inserting MMP9

11 May 2020 16:23:17,811 INFO : 49% Done

11 May 2020 16:23:17,876 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:17,876 INFO : Inserting MUC1

11 May 2020 16:23:17,878 INFO : 52% Done

11 May 2020 16:23:17,927 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:17,927 INFO : Inserting NCOA2

11 May 2020 16:23:17,930 INFO : 59% Done

11 May 2020 16:23:17,988 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:17,988 INFO : Inserting PSA

11 May 2020 16:23:17,990 INFO : 65% Done

11 May 2020 16:23:18,058 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:18,058 INFO : Inserting SMAD4

11 May 2020 16:23:18,061 INFO : 70% Done

11 May 2020 16:23:18,116 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:18,116 INFO : Inserting SPINK1

11 May 2020 16:23:18,118 INFO : 75% Done

11 May 2020 16:23:18,188 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:18,188 INFO : Inserting SPRC

11 May 2020 16:23:18,192 INFO : 82% Done

11 May 2020 16:23:18,278 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:18,278 INFO : Inserting TFF3

11 May 2020 16:23:18,281 INFO : 88% Done

11 May 2020 16:23:18,358 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:18,358 INFO : Inserting TGFB1

11 May 2020 16:23:18,360 INFO : 91% Done

11 May 2020 16:23:18,417 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:18,417 INFO : Inserting VEGFA

11 May 2020 16:23:18,420 INFO : 98% Done

11 May 2020 16:23:18,498 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:18,498 INFO : Done parsing Skyline document.

11 May 2020 16:23:18,500 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:23:18,527 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:23:18,585 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:23:18,607 INFO : Cleaning up temp tables

11 May 2020 16:23:19,144 INFO : Completed import of Skyline document from CPDR-FFPE-ID-576_2020-01-28_13-36-02.sky.zip

11 May 2020 16:23:19,147 INFO : 100% Done

11 May 2020 16:23:19,159 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80263/CPDR-FFPE-ID-576_2020-01-28_13-36-02.sky.zip into the system

11 May 2020 16:23:19,159 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80275/CPDR-FFPE-ID-717_2020-01-28_13-40-27/CPDR-FFPE-ID-717.skyd into the system

11 May 2020 16:23:19,160 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80275/CPDR-FFPE-ID-717_2020-01-28_13-40-27/CPDR-FFPE-ID-717.skyd into the system

11 May 2020 16:23:19,160 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80275/CPDR-FFPE-ID-717_2020-01-28_13-40-27.sky.zip into the system

11 May 2020 16:23:19,165 INFO : Starting import from CPDR-FFPE-ID-717_2020-01-28_13-40-27.sky.zip

11 May 2020 16:23:19,171 INFO : Starting to import Skyline document from CPDR-FFPE-ID-717_2020-01-28_13-40-27.sky.zip

11 May 2020 16:23:19,181 INFO : Expanding CPDR-FFPE-ID-717.skyd

11 May 2020 16:23:19,443 INFO : Expanding CPDR-FFPE-ID-717.sky.view

11 May 2020 16:23:19,443 INFO : Expanding CPDR-FFPE-ID-717.sky

11 May 2020 16:23:19,452 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:23:19,456 INFO : 6% Done

11 May 2020 16:23:19,584 INFO : Inserting ANXA2

11 May 2020 16:23:19,591 INFO : 14% Done

11 May 2020 16:23:19,665 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:19,665 INFO : Inserting CAMKK2

11 May 2020 16:23:19,668 INFO : 18% Done

11 May 2020 16:23:20,072 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:20,072 INFO : Inserting CCND1

11 May 2020 16:23:20,074 INFO : 23% Done

11 May 2020 16:23:20,163 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:20,163 INFO : Inserting EGFR

11 May 2020 16:23:20,166 INFO : 31% Done

11 May 2020 16:23:20,268 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:20,268 INFO : Inserting ERG_pan

11 May 2020 16:23:20,272 INFO : 42% Done

11 May 2020 16:23:20,431 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:20,432 INFO : Inserting FOLH1

11 May 2020 16:23:20,434 INFO : 47% Done

11 May 2020 16:23:20,508 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:20,508 INFO : Inserting MMP9

11 May 2020 16:23:20,511 INFO : 58% Done

11 May 2020 16:23:20,660 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:20,660 INFO : Inserting MUC1

11 May 2020 16:23:20,663 INFO : 65% Done

11 May 2020 16:23:20,774 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:20,774 INFO : 67% Done

11 May 2020 16:23:20,774 INFO : Inserting NCOA2

11 May 2020 16:23:20,776 INFO : 69% Done

11 May 2020 16:23:20,829 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:20,829 INFO : 70% Done

11 May 2020 16:23:20,830 INFO : Inserting PSA

11 May 2020 16:23:20,832 INFO : 74% Done

11 May 2020 16:23:20,896 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:20,896 INFO : Inserting SMAD4

11 May 2020 16:23:20,899 INFO : 78% Done

11 May 2020 16:23:20,958 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:20,958 INFO : Inserting SPINK1

11 May 2020 16:23:20,961 INFO : 82% Done

11 May 2020 16:23:21,025 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:21,025 INFO : Inserting SPRC

11 May 2020 16:23:21,027 INFO : 85% Done

11 May 2020 16:23:21,078 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:21,078 INFO : Inserting TFF3

11 May 2020 16:23:21,080 INFO : 90% Done

11 May 2020 16:23:21,164 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:21,164 INFO : Inserting TGFB1

11 May 2020 16:23:21,166 INFO : 93% Done

11 May 2020 16:23:21,205 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:21,206 INFO : 94% Done

11 May 2020 16:23:21,206 INFO : Inserting VEGFA

11 May 2020 16:23:21,208 INFO : 98% Done

11 May 2020 16:23:21,282 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:21,282 INFO : Done parsing Skyline document.

11 May 2020 16:23:21,284 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:23:21,313 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:23:21,374 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:23:21,396 INFO : Cleaning up temp tables

11 May 2020 16:23:21,884 INFO : Completed import of Skyline document from CPDR-FFPE-ID-717_2020-01-28_13-40-27.sky.zip

11 May 2020 16:23:21,886 INFO : 100% Done

11 May 2020 16:23:21,898 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80275/CPDR-FFPE-ID-717_2020-01-28_13-40-27.sky.zip into the system

11 May 2020 16:23:21,898 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80276/CPDR-FFPE-ID-609_2020-01-28_13-40-41/CPDR-FFPE-ID-609.skyd into the system

11 May 2020 16:23:21,900 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80276/CPDR-FFPE-ID-609_2020-01-28_13-40-41/CPDR-FFPE-ID-609.skyd into the system

11 May 2020 16:23:21,900 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80276/CPDR-FFPE-ID-609_2020-01-28_13-40-41.sky.zip into the system

11 May 2020 16:23:21,904 INFO : Starting import from CPDR-FFPE-ID-609_2020-01-28_13-40-41.sky.zip

11 May 2020 16:23:21,911 INFO : Starting to import Skyline document from CPDR-FFPE-ID-609_2020-01-28_13-40-41.sky.zip

11 May 2020 16:23:21,922 INFO : Expanding CPDR-FFPE-ID-609.skyd

11 May 2020 16:23:22,193 INFO : Expanding CPDR-FFPE-ID-609.sky.view

11 May 2020 16:23:22,194 INFO : Expanding CPDR-FFPE-ID-609.sky

11 May 2020 16:23:22,204 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:23:22,209 INFO : 6% Done

11 May 2020 16:23:22,344 INFO : Inserting ANXA2

11 May 2020 16:23:22,352 INFO : 15% Done

11 May 2020 16:23:22,465 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:22,466 INFO : Inserting CAMKK2

11 May 2020 16:23:22,468 INFO : 21% Done

11 May 2020 16:23:22,576 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:22,576 INFO : Inserting CCND1

11 May 2020 16:23:22,579 INFO : 28% Done

11 May 2020 16:23:22,691 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:22,691 INFO : Inserting EGFR

11 May 2020 16:23:22,693 INFO : 33% Done

11 May 2020 16:23:22,763 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:22,763 INFO : Inserting ERG_pan

11 May 2020 16:23:22,766 INFO : 40% Done

11 May 2020 16:23:22,869 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:22,869 INFO : Inserting FOLH1

11 May 2020 16:23:22,871 INFO : 43% Done

11 May 2020 16:23:22,924 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:22,924 INFO : Inserting MMP9

11 May 2020 16:23:22,926 INFO : 50% Done

11 May 2020 16:23:23,033 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:23,033 INFO : Inserting MUC1

11 May 2020 16:23:23,035 INFO : 54% Done

11 May 2020 16:23:23,107 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:23,108 INFO : Inserting NCOA2

11 May 2020 16:23:23,110 INFO : 60% Done

11 May 2020 16:23:23,203 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:23,203 INFO : Inserting PSA

11 May 2020 16:23:23,205 INFO : 66% Done

11 May 2020 16:23:23,299 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:23,299 INFO : Inserting SMAD4

11 May 2020 16:23:23,302 INFO : 71% Done

11 May 2020 16:23:23,396 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:23,396 INFO : Inserting SPINK1

11 May 2020 16:23:23,399 INFO : 77% Done

11 May 2020 16:23:23,495 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:23,495 INFO : Inserting SPRC

11 May 2020 16:23:23,498 INFO : 84% Done

11 May 2020 16:23:23,606 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:23,606 INFO : Inserting TFF3

11 May 2020 16:23:23,609 INFO : 90% Done

11 May 2020 16:23:23,709 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:23,709 INFO : Inserting TGFB1

11 May 2020 16:23:23,711 INFO : 93% Done

11 May 2020 16:23:23,755 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:23,755 INFO : Inserting VEGFA

11 May 2020 16:23:23,757 INFO : 98% Done

11 May 2020 16:23:23,857 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:23,857 INFO : Done parsing Skyline document.

11 May 2020 16:23:23,859 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:23:23,889 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:23:23,967 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:23:23,995 INFO : Cleaning up temp tables

11 May 2020 16:23:24,005 INFO : Completed import of Skyline document from CPDR-FFPE-ID-609_2020-01-28_13-40-41.sky.zip

11 May 2020 16:23:24,006 INFO : 100% Done

11 May 2020 16:23:24,019 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80276/CPDR-FFPE-ID-609_2020-01-28_13-40-41.sky.zip into the system

11 May 2020 16:23:24,020 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80296/CPDR-FFPE-ID-777_2020-01-28_13-45-44/CPDR-FFPE-ID-777.skyd into the system

11 May 2020 16:23:24,021 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80296/CPDR-FFPE-ID-777_2020-01-28_13-45-44/CPDR-FFPE-ID-777.skyd into the system

11 May 2020 16:23:24,021 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80296/CPDR-FFPE-ID-777_2020-01-28_13-45-44.sky.zip into the system

11 May 2020 16:23:24,025 INFO : Starting import from CPDR-FFPE-ID-777_2020-01-28_13-45-44.sky.zip

11 May 2020 16:23:24,031 INFO : Starting to import Skyline document from CPDR-FFPE-ID-777_2020-01-28_13-45-44.sky.zip

11 May 2020 16:23:24,039 INFO : Expanding CPDR-FFPE-ID-777.skyd

11 May 2020 16:23:24,240 INFO : Expanding CPDR-FFPE-ID-777.sky.view

11 May 2020 16:23:24,241 INFO : Expanding CPDR-FFPE-ID-777.sky

11 May 2020 16:23:24,250 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:23:24,253 INFO : 6% Done

11 May 2020 16:23:24,375 INFO : Inserting ANXA2

11 May 2020 16:23:24,382 INFO : 14% Done

11 May 2020 16:23:24,481 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:24,481 INFO : Inserting CAMKK2

11 May 2020 16:23:24,484 INFO : 22% Done

11 May 2020 16:23:24,579 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:24,579 INFO : Inserting CCND1

11 May 2020 16:23:24,581 INFO : 26% Done

11 May 2020 16:23:24,644 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:24,644 INFO : Inserting EGFR

11 May 2020 16:23:24,647 INFO : 34% Done

11 May 2020 16:23:24,738 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:24,738 INFO : Inserting ERG_pan

11 May 2020 16:23:24,741 INFO : 45% Done

11 May 2020 16:23:24,878 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:24,878 INFO : Inserting FOLH1

11 May 2020 16:23:24,881 INFO : 50% Done

11 May 2020 16:23:24,949 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:24,949 INFO : Inserting MMP9

11 May 2020 16:23:24,952 INFO : 60% Done

11 May 2020 16:23:25,086 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:25,086 INFO : Inserting MUC1

11 May 2020 16:23:25,089 INFO : 67% Done

11 May 2020 16:23:25,187 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:25,187 INFO : Inserting NCOA2

11 May 2020 16:23:25,190 INFO : 72% Done

11 May 2020 16:23:25,270 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:25,270 INFO : Inserting PSA

11 May 2020 16:23:25,272 INFO : 75% Done

11 May 2020 16:23:25,322 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:25,322 INFO : Inserting SMAD4

11 May 2020 16:23:25,325 INFO : 79% Done

11 May 2020 16:23:25,385 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:25,385 INFO : Inserting SPINK1

11 May 2020 16:23:25,387 INFO : 82% Done

11 May 2020 16:23:25,428 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:25,429 INFO : Inserting SPRC

11 May 2020 16:23:25,431 INFO : 85% Done

11 May 2020 16:23:25,487 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:25,487 INFO : Inserting TFF3

11 May 2020 16:23:25,489 INFO : 89% Done

11 May 2020 16:23:25,542 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:25,542 INFO : Inserting TGFB1

11 May 2020 16:23:25,544 INFO : 92% Done

11 May 2020 16:23:25,570 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:25,570 INFO : Inserting VEGFA

11 May 2020 16:23:25,573 INFO : 98% Done

11 May 2020 16:23:25,666 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:25,666 INFO : Done parsing Skyline document.

11 May 2020 16:23:25,668 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:23:25,697 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:23:25,755 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:23:25,777 INFO : Cleaning up temp tables

11 May 2020 16:23:26,444 INFO : Completed import of Skyline document from CPDR-FFPE-ID-777_2020-01-28_13-45-44.sky.zip

11 May 2020 16:23:26,446 INFO : 100% Done

11 May 2020 16:23:26,460 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80296/CPDR-FFPE-ID-777_2020-01-28_13-45-44.sky.zip into the system

11 May 2020 16:23:26,460 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80305/CPDR-FFPE-ID-739_2020-01-28_13-48-14/CPDR-FFPE-ID-739.skyd into the system

11 May 2020 16:23:26,461 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80305/CPDR-FFPE-ID-739_2020-01-28_13-48-14/CPDR-FFPE-ID-739.skyd into the system

11 May 2020 16:23:26,461 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80305/CPDR-FFPE-ID-739_2020-01-28_13-48-14.sky.zip into the system

11 May 2020 16:23:26,465 INFO : Starting import from CPDR-FFPE-ID-739_2020-01-28_13-48-14.sky.zip

11 May 2020 16:23:26,471 INFO : Starting to import Skyline document from CPDR-FFPE-ID-739_2020-01-28_13-48-14.sky.zip

11 May 2020 16:23:26,477 INFO : Expanding CPDR-FFPE-ID-739.skyd

11 May 2020 16:23:26,637 INFO : Expanding CPDR-FFPE-ID-739.sky.view

11 May 2020 16:23:26,638 INFO : Expanding CPDR-FFPE-ID-739.sky

11 May 2020 16:23:26,646 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:23:26,648 INFO : 5% Done

11 May 2020 16:23:26,765 INFO : Inserting ANXA2

11 May 2020 16:23:26,773 INFO : 15% Done

11 May 2020 16:23:26,871 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:26,871 INFO : Inserting CAMKK2

11 May 2020 16:23:26,873 INFO : 23% Done

11 May 2020 16:23:26,971 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:26,971 INFO : Inserting CCND1

11 May 2020 16:23:26,973 INFO : 28% Done

11 May 2020 16:23:27,070 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:27,070 INFO : Inserting EGFR

11 May 2020 16:23:27,073 INFO : 34% Done

11 May 2020 16:23:27,184 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:27,184 INFO : Inserting ERG_pan

11 May 2020 16:23:27,187 INFO : 41% Done

11 May 2020 16:23:27,288 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:27,288 INFO : 43% Done

11 May 2020 16:23:27,288 INFO : Inserting FOLH1

11 May 2020 16:23:27,290 INFO : 46% Done

11 May 2020 16:23:27,333 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:27,333 INFO : Inserting MMP9

11 May 2020 16:23:27,335 INFO : 53% Done

11 May 2020 16:23:27,433 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:27,433 INFO : Inserting MUC1

11 May 2020 16:23:27,435 INFO : 59% Done

11 May 2020 16:23:27,494 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:27,494 INFO : Inserting NCOA2

11 May 2020 16:23:27,497 INFO : 65% Done

11 May 2020 16:23:27,579 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:27,579 INFO : Inserting PSA

11 May 2020 16:23:27,581 INFO : 70% Done

11 May 2020 16:23:27,632 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:27,632 INFO : Inserting SMAD4

11 May 2020 16:23:27,634 INFO : 75% Done

11 May 2020 16:23:27,706 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:27,706 INFO : Inserting SPINK1

11 May 2020 16:23:27,708 INFO : 80% Done

11 May 2020 16:23:27,764 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:27,764 INFO : Inserting SPRC

11 May 2020 16:23:27,766 INFO : 84% Done

11 May 2020 16:23:27,818 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:27,819 INFO : Inserting TFF3

11 May 2020 16:23:27,821 INFO : 89% Done

11 May 2020 16:23:27,874 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:27,874 INFO : Inserting TGFB1

11 May 2020 16:23:27,876 INFO : 92% Done

11 May 2020 16:23:27,902 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:27,902 INFO : Inserting VEGFA

11 May 2020 16:23:27,904 INFO : 98% Done

11 May 2020 16:23:27,992 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:27,992 INFO : Done parsing Skyline document.

11 May 2020 16:23:27,994 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:23:28,021 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:23:28,074 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:23:28,094 INFO : Cleaning up temp tables

11 May 2020 16:23:28,648 INFO : Completed import of Skyline document from CPDR-FFPE-ID-739_2020-01-28_13-48-14.sky.zip

11 May 2020 16:23:28,650 INFO : 100% Done

11 May 2020 16:23:28,663 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80305/CPDR-FFPE-ID-739_2020-01-28_13-48-14.sky.zip into the system

11 May 2020 16:23:28,663 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80313/CPDR-FFPE-ID-611_2020-01-28_15-04-01/CPDR-FFPE-ID-611.skyd into the system

11 May 2020 16:23:28,664 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80313/CPDR-FFPE-ID-611_2020-01-28_15-04-01/CPDR-FFPE-ID-611.skyd into the system

11 May 2020 16:23:28,664 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80313/CPDR-FFPE-ID-611_2020-01-28_15-04-01.sky.zip into the system

11 May 2020 16:23:28,668 INFO : Starting import from CPDR-FFPE-ID-611_2020-01-28_15-04-01.sky.zip

11 May 2020 16:23:28,674 INFO : Starting to import Skyline document from CPDR-FFPE-ID-611_2020-01-28_15-04-01.sky.zip

11 May 2020 16:23:28,683 INFO : Expanding CPDR-FFPE-ID-611.skyd

11 May 2020 16:23:28,945 INFO : Expanding CPDR-FFPE-ID-611.sky.view

11 May 2020 16:23:28,946 INFO : Expanding CPDR-FFPE-ID-611.sky

11 May 2020 16:23:28,955 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 16:23:28,958 INFO : 6% Done

11 May 2020 16:23:29,099 INFO : Inserting ANXA2

11 May 2020 16:23:29,108 INFO : 15% Done

11 May 2020 16:23:29,213 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:29,213 INFO : Inserting CAMKK2

11 May 2020 16:23:29,215 INFO : 21% Done

11 May 2020 16:23:29,312 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:29,312 INFO : Inserting CCND1

11 May 2020 16:23:29,315 INFO : 26% Done

11 May 2020 16:23:29,393 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:29,393 INFO : Inserting EGFR

11 May 2020 16:23:29,396 INFO : 33% Done

11 May 2020 16:23:29,497 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:29,497 INFO : Inserting ERG_pan

11 May 2020 16:23:29,500 INFO : 41% Done

11 May 2020 16:23:29,614 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:29,614 INFO : Inserting FOLH1

11 May 2020 16:23:29,617 INFO : 45% Done

11 May 2020 16:23:29,680 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:29,681 INFO : Inserting MMP9

11 May 2020 16:23:29,684 INFO : 54% Done

11 May 2020 16:23:29,814 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:29,814 INFO : 55% Done

11 May 2020 16:23:29,814 INFO : Inserting MUC1

11 May 2020 16:23:29,817 INFO : 61% Done

11 May 2020 16:23:29,901 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:29,901 INFO : Inserting NCOA2

11 May 2020 16:23:29,903 INFO : 67% Done

11 May 2020 16:23:29,987 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:29,987 INFO : Inserting PSA

11 May 2020 16:23:29,989 INFO : 72% Done

11 May 2020 16:23:30,063 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:30,063 INFO : Inserting SMAD4

11 May 2020 16:23:30,065 INFO : 75% Done

11 May 2020 16:23:30,113 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:30,113 INFO : Inserting SPINK1

11 May 2020 16:23:30,115 INFO : 79% Done

11 May 2020 16:23:30,188 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:30,188 INFO : 80% Done

11 May 2020 16:23:30,188 INFO : Inserting SPRC

11 May 2020 16:23:30,190 INFO : 85% Done

11 May 2020 16:23:30,260 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:30,260 INFO : Inserting TFF3

11 May 2020 16:23:30,262 INFO : 89% Done

11 May 2020 16:23:30,335 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:30,336 INFO : Inserting TGFB1

11 May 2020 16:23:30,337 INFO : 91% Done

11 May 2020 16:23:30,370 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:30,370 INFO : Inserting VEGFA

11 May 2020 16:23:30,372 INFO : 98% Done

11 May 2020 16:23:30,470 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:30,470 INFO : Done parsing Skyline document.

11 May 2020 16:23:30,472 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:23:30,502 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:23:30,575 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:23:30,603 INFO : Cleaning up temp tables

11 May 2020 16:23:31,084 INFO : Completed import of Skyline document from CPDR-FFPE-ID-611_2020-01-28_15-04-01.sky.zip

11 May 2020 16:23:31,085 INFO : 100% Done

11 May 2020 16:23:31,101 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80313/CPDR-FFPE-ID-611_2020-01-28_15-04-01.sky.zip into the system

11 May 2020 16:23:31,101 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80350/CPDR-FFPE-ID-678_2020-01-29_12-14-31/CPDR-FFPE-ID-678.skyd into the system

11 May 2020 16:23:31,103 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80350/CPDR-FFPE-ID-678_2020-01-29_12-14-31/CPDR-FFPE-ID-678.skyd into the system

11 May 2020 16:23:31,103 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80350/CPDR-FFPE-ID-678_2020-01-29_12-14-31.sky.zip into the system

11 May 2020 16:23:31,106 INFO : Starting import from CPDR-FFPE-ID-678_2020-01-29_12-14-31.sky.zip

11 May 2020 16:23:31,113 INFO : Starting to import Skyline document from CPDR-FFPE-ID-678_2020-01-29_12-14-31.sky.zip

11 May 2020 16:23:31,124 INFO : Expanding CPDR-FFPE-ID-678.skyd

11 May 2020 16:23:31,367 INFO : Expanding CPDR-FFPE-ID-678.sky.view

11 May 2020 16:23:31,368 INFO : Expanding CPDR-FFPE-ID-678.sky

11 May 2020 16:23:31,377 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:23:31,380 INFO : 6% Done

11 May 2020 16:23:31,557 INFO : Inserting ANXA2

11 May 2020 16:23:31,565 INFO : 13% Done

11 May 2020 16:23:31,664 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:31,665 INFO : Inserting CAMKK2

11 May 2020 16:23:31,668 INFO : 23% Done

11 May 2020 16:23:31,795 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:31,795 INFO : Inserting CCND1

11 May 2020 16:23:31,798 INFO : 28% Done

11 May 2020 16:23:31,883 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:31,884 INFO : Inserting EGFR

11 May 2020 16:23:31,886 INFO : 34% Done

11 May 2020 16:23:31,985 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:31,985 INFO : Inserting ERG_pan

11 May 2020 16:23:31,987 INFO : 37% Done

11 May 2020 16:23:32,047 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:32,047 INFO : 38% Done

11 May 2020 16:23:32,047 INFO : Inserting FOLH1

11 May 2020 16:23:32,049 INFO : 42% Done

11 May 2020 16:23:32,106 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:32,106 INFO : Inserting MMP9

11 May 2020 16:23:32,109 INFO : 49% Done

11 May 2020 16:23:32,267 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:32,267 INFO : 50% Done

11 May 2020 16:23:32,267 INFO : Inserting MUC1

11 May 2020 16:23:32,269 INFO : 55% Done

11 May 2020 16:23:32,347 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:32,347 INFO : Inserting NCOA2

11 May 2020 16:23:32,350 INFO : 62% Done

11 May 2020 16:23:32,458 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:32,458 INFO : 63% Done

11 May 2020 16:23:32,458 INFO : Inserting PSA

11 May 2020 16:23:32,460 INFO : 67% Done

11 May 2020 16:23:32,527 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:32,527 INFO : Inserting SMAD4

11 May 2020 16:23:32,529 INFO : 74% Done

11 May 2020 16:23:32,621 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:32,621 INFO : Inserting SPINK1

11 May 2020 16:23:32,623 INFO : 79% Done

11 May 2020 16:23:32,711 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:32,711 INFO : Inserting SPRC

11 May 2020 16:23:32,713 INFO : 85% Done

11 May 2020 16:23:32,798 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:32,798 INFO : 86% Done

11 May 2020 16:23:32,798 INFO : Inserting TFF3

11 May 2020 16:23:32,800 INFO : 89% Done

11 May 2020 16:23:32,853 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:32,854 INFO : Inserting TGFB1

11 May 2020 16:23:32,855 INFO : 91% Done

11 May 2020 16:23:32,880 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:32,880 INFO : Inserting VEGFA

11 May 2020 16:23:32,882 INFO : 98% Done

11 May 2020 16:23:32,992 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:32,992 INFO : Done parsing Skyline document.

11 May 2020 16:23:32,994 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:23:33,024 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:23:33,103 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:23:33,135 INFO : Cleaning up temp tables

11 May 2020 16:23:33,139 INFO : Completed import of Skyline document from CPDR-FFPE-ID-678_2020-01-29_12-14-31.sky.zip

11 May 2020 16:23:33,146 INFO : 100% Done

11 May 2020 16:23:33,160 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80350/CPDR-FFPE-ID-678_2020-01-29_12-14-31.sky.zip into the system

11 May 2020 16:23:33,160 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80354/CPDR-FFPE-ID-904_2020-01-29_12-15-30/CPDR-FFPE-ID-904.skyd into the system

11 May 2020 16:23:33,161 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80354/CPDR-FFPE-ID-904_2020-01-29_12-15-30/CPDR-FFPE-ID-904.skyd into the system

11 May 2020 16:23:33,161 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80354/CPDR-FFPE-ID-904_2020-01-29_12-15-30.sky.zip into the system

11 May 2020 16:23:33,164 INFO : Starting import from CPDR-FFPE-ID-904_2020-01-29_12-15-30.sky.zip

11 May 2020 16:23:33,171 INFO : Starting to import Skyline document from CPDR-FFPE-ID-904_2020-01-29_12-15-30.sky.zip

11 May 2020 16:23:33,183 INFO : Expanding CPDR-FFPE-ID-904.skyd

11 May 2020 16:23:33,499 INFO : Expanding CPDR-FFPE-ID-904.sky.view

11 May 2020 16:23:33,499 INFO : Expanding CPDR-FFPE-ID-904.sky

11 May 2020 16:23:33,509 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:23:33,513 INFO : 6% Done

11 May 2020 16:23:33,678 INFO : Inserting ANXA2

11 May 2020 16:23:33,686 INFO : 14% Done

11 May 2020 16:23:33,863 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:33,863 INFO : Inserting CAMKK2

11 May 2020 16:23:33,866 INFO : 22% Done

11 May 2020 16:23:33,995 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:33,995 INFO : Inserting CCND1

11 May 2020 16:23:33,998 INFO : 28% Done

11 May 2020 16:23:34,113 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:34,113 INFO : Inserting EGFR

11 May 2020 16:23:34,116 INFO : 33% Done

11 May 2020 16:23:34,224 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:34,224 INFO : Inserting ERG_pan

11 May 2020 16:23:34,227 INFO : 40% Done

11 May 2020 16:23:34,324 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:34,324 INFO : Inserting FOLH1

11 May 2020 16:23:34,326 INFO : 45% Done

11 May 2020 16:23:34,414 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:34,414 INFO : Inserting MMP9

11 May 2020 16:23:34,417 INFO : 51% Done

11 May 2020 16:23:34,526 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:34,527 INFO : Inserting MUC1

11 May 2020 16:23:34,529 INFO : 58% Done

11 May 2020 16:23:34,642 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:34,642 INFO : Inserting NCOA2

11 May 2020 16:23:34,645 INFO : 65% Done

11 May 2020 16:23:34,756 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:34,756 INFO : Inserting PSA

11 May 2020 16:23:34,759 INFO : 69% Done

11 May 2020 16:23:34,832 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:34,833 INFO : Inserting SMAD4

11 May 2020 16:23:34,835 INFO : 74% Done

11 May 2020 16:23:34,930 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:34,930 INFO : Inserting SPINK1

11 May 2020 16:23:34,933 INFO : 80% Done

11 May 2020 16:23:35,030 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:35,031 INFO : Inserting SPRC

11 May 2020 16:23:35,033 INFO : 85% Done

11 May 2020 16:23:35,121 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:35,122 INFO : 86% Done

11 May 2020 16:23:35,122 INFO : Inserting TFF3

11 May 2020 16:23:35,144 INFO : 88% Done

11 May 2020 16:23:35,209 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:35,209 INFO : Inserting TGFB1

11 May 2020 16:23:35,211 INFO : 91% Done

11 May 2020 16:23:35,249 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:35,249 INFO : Inserting VEGFA

11 May 2020 16:23:35,252 INFO : 98% Done

11 May 2020 16:23:35,374 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:35,374 INFO : Done parsing Skyline document.

11 May 2020 16:23:35,376 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:23:35,409 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:23:35,500 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:23:35,535 INFO : Cleaning up temp tables

11 May 2020 16:23:36,116 INFO : Completed import of Skyline document from CPDR-FFPE-ID-904_2020-01-29_12-15-30.sky.zip

11 May 2020 16:23:36,118 INFO : 100% Done

11 May 2020 16:23:36,131 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80354/CPDR-FFPE-ID-904_2020-01-29_12-15-30.sky.zip into the system

11 May 2020 16:23:36,131 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80355/CPDR-FFPE-ID-903_2020-01-29_12-15-45/CPDR-FFPE-ID-903.skyd into the system

11 May 2020 16:23:36,132 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80355/CPDR-FFPE-ID-903_2020-01-29_12-15-45/CPDR-FFPE-ID-903.skyd into the system

11 May 2020 16:23:36,132 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80355/CPDR-FFPE-ID-903_2020-01-29_12-15-45.sky.zip into the system

11 May 2020 16:23:36,136 INFO : Starting import from CPDR-FFPE-ID-903_2020-01-29_12-15-45.sky.zip

11 May 2020 16:23:36,143 INFO : Starting to import Skyline document from CPDR-FFPE-ID-903_2020-01-29_12-15-45.sky.zip

11 May 2020 16:23:36,151 INFO : Expanding CPDR-FFPE-ID-903.skyd

11 May 2020 16:23:36,364 INFO : Expanding CPDR-FFPE-ID-903.sky.view

11 May 2020 16:23:36,364 INFO : Expanding CPDR-FFPE-ID-903.sky

11 May 2020 16:23:36,373 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:23:36,376 INFO : 6% Done

11 May 2020 16:23:36,617 INFO : Inserting ANXA2

11 May 2020 16:23:36,625 INFO : 14% Done

11 May 2020 16:23:36,724 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:36,724 INFO : Inserting CAMKK2

11 May 2020 16:23:36,726 INFO : 22% Done

11 May 2020 16:23:36,825 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:36,825 INFO : Inserting CCND1

11 May 2020 16:23:36,827 INFO : 28% Done

11 May 2020 16:23:36,901 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:36,901 INFO : Inserting EGFR

11 May 2020 16:23:36,904 INFO : 34% Done

11 May 2020 16:23:36,986 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:36,986 INFO : Inserting ERG_pan

11 May 2020 16:23:36,988 INFO : 41% Done

11 May 2020 16:23:37,070 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:37,070 INFO : Inserting FOLH1

11 May 2020 16:23:37,072 INFO : 45% Done

11 May 2020 16:23:37,125 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:37,125 INFO : Inserting MMP9

11 May 2020 16:23:37,128 INFO : 54% Done

11 May 2020 16:23:37,266 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:37,266 INFO : Inserting MUC1

11 May 2020 16:23:37,268 INFO : 59% Done

11 May 2020 16:23:37,335 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:37,336 INFO : Inserting NCOA2

11 May 2020 16:23:37,338 INFO : 66% Done

11 May 2020 16:23:37,418 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:37,418 INFO : Inserting PSA

11 May 2020 16:23:37,420 INFO : 71% Done

11 May 2020 16:23:37,479 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:37,480 INFO : Inserting SMAD4

11 May 2020 16:23:37,482 INFO : 75% Done

11 May 2020 16:23:37,550 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:37,550 INFO : Inserting SPINK1

11 May 2020 16:23:37,552 INFO : 80% Done

11 May 2020 16:23:37,609 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:37,610 INFO : Inserting SPRC

11 May 2020 16:23:37,612 INFO : 84% Done

11 May 2020 16:23:37,669 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:37,669 INFO : 86% Done

11 May 2020 16:23:37,670 INFO : Inserting TFF3

11 May 2020 16:23:37,689 INFO : 90% Done

11 May 2020 16:23:37,758 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:37,758 INFO : Inserting TGFB1

11 May 2020 16:23:37,760 INFO : 91% Done

11 May 2020 16:23:37,779 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:37,779 INFO : Inserting VEGFA

11 May 2020 16:23:37,781 INFO : 98% Done

11 May 2020 16:23:37,867 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:37,867 INFO : Done parsing Skyline document.

11 May 2020 16:23:37,869 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:23:37,897 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:23:37,957 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:23:37,979 INFO : Cleaning up temp tables

11 May 2020 16:23:37,989 INFO : Completed import of Skyline document from CPDR-FFPE-ID-903_2020-01-29_12-15-45.sky.zip

11 May 2020 16:23:37,991 INFO : 100% Done

11 May 2020 16:23:38,003 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80355/CPDR-FFPE-ID-903_2020-01-29_12-15-45.sky.zip into the system

11 May 2020 16:23:38,003 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80199/CPDR-FFPE-ID-462_2020-01-28_11-18-28/CPDR-FFPE-ID-462.skyd into the system

11 May 2020 16:23:38,004 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80199/CPDR-FFPE-ID-462_2020-01-28_11-18-28/CPDR-FFPE-ID-462.skyd into the system

11 May 2020 16:23:38,004 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80199/CPDR-FFPE-ID-462_2020-01-28_11-18-28.sky.zip into the system

11 May 2020 16:23:38,007 INFO : Starting import from CPDR-FFPE-ID-462_2020-01-28_11-18-28.sky.zip

11 May 2020 16:23:38,014 INFO : Starting to import Skyline document from CPDR-FFPE-ID-462_2020-01-28_11-18-28.sky.zip

11 May 2020 16:23:38,023 INFO : Expanding CPDR-FFPE-ID-462.skyd

11 May 2020 16:23:38,259 INFO : Expanding CPDR-FFPE-ID-462.sky.view

11 May 2020 16:23:38,260 INFO : Expanding CPDR-FFPE-ID-462.sky

11 May 2020 16:23:38,268 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1

11 May 2020 16:23:38,271 INFO : 6% Done

11 May 2020 16:23:38,427 INFO : Inserting ANXA2

11 May 2020 16:23:38,434 INFO : 14% Done

11 May 2020 16:23:38,509 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:38,509 INFO : Inserting CAMKK2

11 May 2020 16:23:38,511 INFO : 20% Done

11 May 2020 16:23:38,543 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:38,543 INFO : Inserting CCND1

11 May 2020 16:23:38,544 INFO : 25% Done

11 May 2020 16:23:38,573 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:38,573 INFO : Inserting EGFR

11 May 2020 16:23:38,574 INFO : 30% Done

11 May 2020 16:23:38,606 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:38,606 INFO : 32% Done

11 May 2020 16:23:38,606 INFO : Inserting ERG_pan

11 May 2020 16:23:38,607 INFO : 42% Done

11 May 2020 16:23:38,703 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:38,703 INFO : Inserting FOLH1

11 May 2020 16:23:38,704 INFO : 47% Done

11 May 2020 16:23:38,728 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:38,728 INFO : Inserting MMP9

11 May 2020 16:23:38,729 INFO : 59% Done

11 May 2020 16:23:38,788 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:38,788 INFO : Inserting MUC1

11 May 2020 16:23:38,789 INFO : 64% Done

11 May 2020 16:23:38,813 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:38,813 INFO : Inserting NCOA2

11 May 2020 16:23:38,814 INFO : 68% Done

11 May 2020 16:23:38,832 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:38,832 INFO : Inserting PSA

11 May 2020 16:23:38,833 INFO : 74% Done

11 May 2020 16:23:38,858 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:38,858 INFO : Inserting SMAD4

11 May 2020 16:23:38,859 INFO : 76% Done

11 May 2020 16:23:38,882 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:38,882 INFO : Inserting SPINK1

11 May 2020 16:23:38,883 INFO : 82% Done

11 May 2020 16:23:38,909 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:38,909 INFO : Inserting SPRC

11 May 2020 16:23:38,910 INFO : 86% Done

11 May 2020 16:23:38,927 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:38,927 INFO : Inserting TFF3

11 May 2020 16:23:38,928 INFO : 91% Done

11 May 2020 16:23:39,094 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:39,094 INFO : Inserting TGFB1

11 May 2020 16:23:39,096 INFO : 93% Done

11 May 2020 16:23:39,128 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:39,128 INFO : Inserting VEGFA

11 May 2020 16:23:39,130 INFO : 98% Done

11 May 2020 16:23:39,192 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:39,193 INFO : Done parsing Skyline document.

11 May 2020 16:23:39,195 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:23:39,221 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:23:39,274 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:23:39,293 INFO : Cleaning up temp tables

11 May 2020 16:23:39,984 INFO : Completed import of Skyline document from CPDR-FFPE-ID-462_2020-01-28_11-18-28.sky.zip

11 May 2020 16:23:39,986 INFO : 100% Done

11 May 2020 16:23:39,998 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80199/CPDR-FFPE-ID-462_2020-01-28_11-18-28.sky.zip into the system

11 May 2020 16:23:39,998 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80209/CPDR-FFPE-ID-472_2020-01-28_11-20-52/CPDR-FFPE-ID-472.skyd into the system

11 May 2020 16:23:40,000 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80209/CPDR-FFPE-ID-472_2020-01-28_11-20-52/CPDR-FFPE-ID-472.skyd into the system

11 May 2020 16:23:40,000 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80209/CPDR-FFPE-ID-472_2020-01-28_11-20-52.sky.zip into the system

11 May 2020 16:23:40,004 INFO : Starting import from CPDR-FFPE-ID-472_2020-01-28_11-20-52.sky.zip

11 May 2020 16:23:40,010 INFO : Starting to import Skyline document from CPDR-FFPE-ID-472_2020-01-28_11-20-52.sky.zip

11 May 2020 16:23:40,019 INFO : Expanding CPDR-FFPE-ID-472.skyd

11 May 2020 16:23:40,248 INFO : Expanding CPDR-FFPE-ID-472.sky.view

11 May 2020 16:23:40,248 INFO : Expanding CPDR-FFPE-ID-472.sky

11 May 2020 16:23:40,257 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1

11 May 2020 16:23:40,260 INFO : 6% Done

11 May 2020 16:23:40,395 INFO : Inserting ANXA2

11 May 2020 16:23:40,403 INFO : 13% Done

11 May 2020 16:23:40,476 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:40,476 INFO : Inserting CAMKK2

11 May 2020 16:23:40,478 INFO : 20% Done

11 May 2020 16:23:40,546 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:40,546 INFO : Inserting CCND1

11 May 2020 16:23:40,549 INFO : 25% Done

11 May 2020 16:23:40,624 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:40,624 INFO : Inserting EGFR

11 May 2020 16:23:40,627 INFO : 31% Done

11 May 2020 16:23:40,704 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:40,705 INFO : Inserting ERG_pan

11 May 2020 16:23:40,708 INFO : 43% Done

11 May 2020 16:23:40,855 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:40,855 INFO : Inserting FOLH1

11 May 2020 16:23:40,858 INFO : 47% Done

11 May 2020 16:23:40,920 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:40,921 INFO : Inserting MMP9

11 May 2020 16:23:40,924 INFO : 60% Done

11 May 2020 16:23:41,076 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:41,076 INFO : Inserting MUC1

11 May 2020 16:23:41,078 INFO : 66% Done

11 May 2020 16:23:41,139 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:41,140 INFO : Inserting NCOA2

11 May 2020 16:23:41,142 INFO : 68% Done

11 May 2020 16:23:41,185 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:41,185 INFO : Inserting PSA

11 May 2020 16:23:41,188 INFO : 74% Done

11 May 2020 16:23:41,260 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:41,260 INFO : Inserting SMAD4

11 May 2020 16:23:41,263 INFO : 78% Done

11 May 2020 16:23:41,322 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:41,322 INFO : Inserting SPINK1

11 May 2020 16:23:41,324 INFO : 82% Done

11 May 2020 16:23:41,384 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:41,384 INFO : Inserting SPRC

11 May 2020 16:23:41,386 INFO : 86% Done

11 May 2020 16:23:41,426 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:41,426 INFO : Inserting TFF3

11 May 2020 16:23:41,428 INFO : 91% Done

11 May 2020 16:23:41,498 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:41,498 INFO : Inserting TGFB1

11 May 2020 16:23:41,499 INFO : 93% Done

11 May 2020 16:23:41,530 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:41,531 INFO : 94% Done

11 May 2020 16:23:41,531 INFO : Inserting VEGFA

11 May 2020 16:23:41,533 INFO : 98% Done

11 May 2020 16:23:41,595 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:41,595 INFO : Done parsing Skyline document.

11 May 2020 16:23:41,598 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:23:41,625 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:23:41,686 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:23:41,705 INFO : Cleaning up temp tables

11 May 2020 16:23:41,709 INFO : Completed import of Skyline document from CPDR-FFPE-ID-472_2020-01-28_11-20-52.sky.zip

11 May 2020 16:23:41,717 INFO : 100% Done

11 May 2020 16:23:41,729 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80209/CPDR-FFPE-ID-472_2020-01-28_11-20-52.sky.zip into the system

11 May 2020 16:23:41,729 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80193/CPDR-FFPE-ID-435_2020-01-28_11-17-00/CPDR-FFPE-ID-435.skyd into the system

11 May 2020 16:23:41,731 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80193/CPDR-FFPE-ID-435_2020-01-28_11-17-00/CPDR-FFPE-ID-435.skyd into the system

11 May 2020 16:23:41,731 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80193/CPDR-FFPE-ID-435_2020-01-28_11-17-00.sky.zip into the system

11 May 2020 16:23:41,734 INFO : Starting import from CPDR-FFPE-ID-435_2020-01-28_11-17-00.sky.zip

11 May 2020 16:23:41,741 INFO : Starting to import Skyline document from CPDR-FFPE-ID-435_2020-01-28_11-17-00.sky.zip

11 May 2020 16:23:41,752 INFO : Expanding CPDR-FFPE-ID-435.skyd

11 May 2020 16:23:42,036 INFO : Expanding CPDR-FFPE-ID-435.sky.view

11 May 2020 16:23:42,037 INFO : Expanding CPDR-FFPE-ID-435.sky

11 May 2020 16:23:42,046 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1

11 May 2020 16:23:42,049 INFO : 6% Done

11 May 2020 16:23:42,215 INFO : Inserting ANXA2

11 May 2020 16:23:42,223 INFO : 14% Done

11 May 2020 16:23:42,322 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:42,323 INFO : Inserting CAMKK2

11 May 2020 16:23:42,325 INFO : 22% Done

11 May 2020 16:23:42,421 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:42,421 INFO : Inserting CCND1

11 May 2020 16:23:42,423 INFO : 27% Done

11 May 2020 16:23:42,520 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:42,520 INFO : Inserting EGFR

11 May 2020 16:23:42,522 INFO : 32% Done

11 May 2020 16:23:42,597 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:42,597 INFO : Inserting ERG_pan

11 May 2020 16:23:42,601 INFO : 44% Done

11 May 2020 16:23:42,750 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:42,750 INFO : Inserting FOLH1

11 May 2020 16:23:42,752 INFO : 48% Done

11 May 2020 16:23:42,813 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:42,813 INFO : Inserting MMP9

11 May 2020 16:23:42,817 INFO : 59% Done

11 May 2020 16:23:42,983 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:42,983 INFO : Inserting MUC1

11 May 2020 16:23:42,985 INFO : 64% Done

11 May 2020 16:23:43,042 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:43,042 INFO : Inserting NCOA2

11 May 2020 16:23:43,044 INFO : 66% Done

11 May 2020 16:23:43,088 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:43,088 INFO : 67% Done

11 May 2020 16:23:43,088 INFO : Inserting PSA

11 May 2020 16:23:43,090 INFO : 71% Done

11 May 2020 16:23:43,161 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:43,162 INFO : Inserting SMAD4

11 May 2020 16:23:43,164 INFO : 76% Done

11 May 2020 16:23:43,204 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:43,204 INFO : Inserting SPINK1

11 May 2020 16:23:43,206 INFO : 80% Done

11 May 2020 16:23:43,251 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:43,251 INFO : Inserting SPRC

11 May 2020 16:23:43,253 INFO : 84% Done

11 May 2020 16:23:43,287 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:43,287 INFO : Inserting TFF3

11 May 2020 16:23:43,289 INFO : 89% Done

11 May 2020 16:23:43,338 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:43,338 INFO : Inserting TGFB1

11 May 2020 16:23:43,340 INFO : 91% Done

11 May 2020 16:23:43,361 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:43,361 INFO : Inserting VEGFA

11 May 2020 16:23:43,363 INFO : 98% Done

11 May 2020 16:23:43,420 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:43,421 INFO : Done parsing Skyline document.

11 May 2020 16:23:43,422 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:23:43,438 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:23:43,479 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:23:43,491 INFO : Cleaning up temp tables

11 May 2020 16:23:43,924 INFO : Completed import of Skyline document from CPDR-FFPE-ID-435_2020-01-28_11-17-00.sky.zip

11 May 2020 16:23:43,925 INFO : 100% Done

11 May 2020 16:23:43,933 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80193/CPDR-FFPE-ID-435_2020-01-28_11-17-00.sky.zip into the system

11 May 2020 16:23:43,934 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80195/CPDR-FFPE-ID-402_2020-01-28_11-17-27/CPDR-FFPE-ID-402.skyd into the system

11 May 2020 16:23:43,935 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80195/CPDR-FFPE-ID-402_2020-01-28_11-17-27/CPDR-FFPE-ID-402.skyd into the system

11 May 2020 16:23:43,935 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80195/CPDR-FFPE-ID-402_2020-01-28_11-17-27.sky.zip into the system

11 May 2020 16:23:43,938 INFO : Starting import from CPDR-FFPE-ID-402_2020-01-28_11-17-27.sky.zip

11 May 2020 16:23:43,942 INFO : Starting to import Skyline document from CPDR-FFPE-ID-402_2020-01-28_11-17-27.sky.zip

11 May 2020 16:23:43,949 INFO : Expanding CPDR-FFPE-ID-402.skyd

11 May 2020 16:23:44,101 INFO : Expanding CPDR-FFPE-ID-402.sky.view

11 May 2020 16:23:44,102 INFO : Expanding CPDR-FFPE-ID-402.sky

11 May 2020 16:23:44,109 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1

11 May 2020 16:23:44,112 INFO : 6% Done

11 May 2020 16:23:44,214 INFO : 9% Done

11 May 2020 16:23:44,214 INFO : Inserting ANXA2

11 May 2020 16:23:44,221 INFO : 14% Done

11 May 2020 16:23:44,279 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:44,279 INFO : Inserting CAMKK2

11 May 2020 16:23:44,281 INFO : 19% Done

11 May 2020 16:23:44,340 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:44,340 INFO : Inserting CCND1

11 May 2020 16:23:44,342 INFO : 25% Done

11 May 2020 16:23:44,412 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:44,413 INFO : 27% Done

11 May 2020 16:23:44,413 INFO : Inserting EGFR

11 May 2020 16:23:44,415 INFO : 32% Done

11 May 2020 16:23:44,468 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:44,468 INFO : Inserting ERG_pan

11 May 2020 16:23:44,470 INFO : 42% Done

11 May 2020 16:23:44,560 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:44,560 INFO : Inserting FOLH1

11 May 2020 16:23:44,561 INFO : 46% Done

11 May 2020 16:23:44,715 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:44,715 INFO : Inserting MMP9

11 May 2020 16:23:44,718 INFO : 56% Done

11 May 2020 16:23:44,797 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:44,797 INFO : Inserting MUC1

11 May 2020 16:23:44,799 INFO : 60% Done

11 May 2020 16:23:44,832 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:44,832 INFO : Inserting NCOA2

11 May 2020 16:23:44,834 INFO : 63% Done

11 May 2020 16:23:44,866 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:44,866 INFO : 65% Done

11 May 2020 16:23:44,866 INFO : Inserting PSA

11 May 2020 16:23:44,868 INFO : 70% Done

11 May 2020 16:23:44,922 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:44,923 INFO : Inserting SMAD4

11 May 2020 16:23:44,925 INFO : 74% Done

11 May 2020 16:23:44,962 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:44,962 INFO : Inserting SPINK1

11 May 2020 16:23:44,964 INFO : 79% Done

11 May 2020 16:23:45,086 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:45,087 INFO : Inserting SPRC

11 May 2020 16:23:45,088 INFO : 84% Done

11 May 2020 16:23:45,122 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:45,122 INFO : Inserting TFF3

11 May 2020 16:23:45,124 INFO : 91% Done

11 May 2020 16:23:45,172 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:45,172 INFO : Inserting TGFB1

11 May 2020 16:23:45,174 INFO : 93% Done

11 May 2020 16:23:45,193 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:45,193 INFO : Inserting VEGFA

11 May 2020 16:23:45,195 INFO : 98% Done

11 May 2020 16:23:45,235 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:45,235 INFO : Done parsing Skyline document.

11 May 2020 16:23:45,237 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:23:45,255 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:23:45,288 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:23:45,300 INFO : Cleaning up temp tables

11 May 2020 16:23:45,724 INFO : Completed import of Skyline document from CPDR-FFPE-ID-402_2020-01-28_11-17-27.sky.zip

11 May 2020 16:23:45,726 INFO : 100% Done

11 May 2020 16:23:45,736 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80195/CPDR-FFPE-ID-402_2020-01-28_11-17-27.sky.zip into the system

11 May 2020 16:23:45,736 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80196/CPDR-FFPE-ID-379_2020-01-28_11-17-40/CPDR-FFPE-ID-379.skyd into the system

11 May 2020 16:23:45,738 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80196/CPDR-FFPE-ID-379_2020-01-28_11-17-40/CPDR-FFPE-ID-379.skyd into the system

11 May 2020 16:23:45,738 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80196/CPDR-FFPE-ID-379_2020-01-28_11-17-40.sky.zip into the system

11 May 2020 16:23:45,741 INFO : Starting import from CPDR-FFPE-ID-379_2020-01-28_11-17-40.sky.zip

11 May 2020 16:23:45,747 INFO : Starting to import Skyline document from CPDR-FFPE-ID-379_2020-01-28_11-17-40.sky.zip

11 May 2020 16:23:45,755 INFO : Expanding CPDR-FFPE-ID-379.skyd

11 May 2020 16:23:45,944 INFO : Expanding CPDR-FFPE-ID-379.sky.view

11 May 2020 16:23:45,944 INFO : Expanding CPDR-FFPE-ID-379.sky

11 May 2020 16:23:45,951 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1

11 May 2020 16:23:45,954 INFO : 6% Done

11 May 2020 16:23:46,062 INFO : Inserting ANXA2

11 May 2020 16:23:46,069 INFO : 14% Done

11 May 2020 16:23:46,140 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:46,140 INFO : Inserting CAMKK2

11 May 2020 16:23:46,143 INFO : 21% Done

11 May 2020 16:23:46,216 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:46,216 INFO : Inserting CCND1

11 May 2020 16:23:46,219 INFO : 27% Done

11 May 2020 16:23:46,290 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:46,290 INFO : Inserting EGFR

11 May 2020 16:23:46,292 INFO : 33% Done

11 May 2020 16:23:46,348 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:46,348 INFO : Inserting ERG_pan

11 May 2020 16:23:46,351 INFO : 42% Done

11 May 2020 16:23:46,465 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:46,466 INFO : Inserting FOLH1

11 May 2020 16:23:46,468 INFO : 46% Done

11 May 2020 16:23:46,514 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:46,515 INFO : Inserting MMP9

11 May 2020 16:23:46,517 INFO : 57% Done

11 May 2020 16:23:46,615 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:46,615 INFO : Inserting MUC1

11 May 2020 16:23:46,617 INFO : 62% Done

11 May 2020 16:23:46,654 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:46,655 INFO : Inserting NCOA2

11 May 2020 16:23:46,656 INFO : 65% Done

11 May 2020 16:23:46,691 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:46,691 INFO : 66% Done

11 May 2020 16:23:46,691 INFO : Inserting PSA

11 May 2020 16:23:46,693 INFO : 71% Done

11 May 2020 16:23:46,746 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:46,747 INFO : Inserting SMAD4

11 May 2020 16:23:46,750 INFO : 74% Done

11 May 2020 16:23:46,795 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:46,795 INFO : 76% Done

11 May 2020 16:23:46,795 INFO : Inserting SPINK1

11 May 2020 16:23:46,797 INFO : 81% Done

11 May 2020 16:23:46,844 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:46,844 INFO : Inserting SPRC

11 May 2020 16:23:46,846 INFO : 84% Done

11 May 2020 16:23:46,883 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:46,883 INFO : Inserting TFF3

11 May 2020 16:23:46,885 INFO : 90% Done

11 May 2020 16:23:46,940 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:46,940 INFO : Inserting TGFB1

11 May 2020 16:23:46,942 INFO : 93% Done

11 May 2020 16:23:46,962 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:46,962 INFO : Inserting VEGFA

11 May 2020 16:23:46,964 INFO : 98% Done

11 May 2020 16:23:47,024 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:47,024 INFO : Done parsing Skyline document.

11 May 2020 16:23:47,026 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:23:47,046 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:23:47,087 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:23:47,102 INFO : Cleaning up temp tables

11 May 2020 16:23:47,534 INFO : Completed import of Skyline document from CPDR-FFPE-ID-379_2020-01-28_11-17-40.sky.zip

11 May 2020 16:23:47,536 INFO : 100% Done

11 May 2020 16:23:47,548 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80196/CPDR-FFPE-ID-379_2020-01-28_11-17-40.sky.zip into the system

11 May 2020 16:23:47,548 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80264/CPDR-FFPE-ID-532_2020-01-28_13-36-13/CPDR-FFPE-ID-532.skyd into the system

11 May 2020 16:23:47,549 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80264/CPDR-FFPE-ID-532_2020-01-28_13-36-13/CPDR-FFPE-ID-532.skyd into the system

11 May 2020 16:23:47,550 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80264/CPDR-FFPE-ID-532_2020-01-28_13-36-13.sky.zip into the system

11 May 2020 16:23:47,554 INFO : Starting import from CPDR-FFPE-ID-532_2020-01-28_13-36-13.sky.zip

11 May 2020 16:23:47,560 INFO : Starting to import Skyline document from CPDR-FFPE-ID-532_2020-01-28_13-36-13.sky.zip

11 May 2020 16:23:47,566 INFO : Expanding CPDR-FFPE-ID-532.skyd

11 May 2020 16:23:47,712 INFO : Expanding CPDR-FFPE-ID-532.sky.view

11 May 2020 16:23:47,713 INFO : Expanding CPDR-FFPE-ID-532.sky

11 May 2020 16:23:47,720 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:23:47,723 INFO : 5% Done

11 May 2020 16:23:47,811 INFO : Inserting ANXA2

11 May 2020 16:23:47,819 INFO : 14% Done

11 May 2020 16:23:47,902 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:47,902 INFO : Inserting CAMKK2

11 May 2020 16:23:47,904 INFO : 21% Done

11 May 2020 16:23:47,983 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:47,983 INFO : Inserting CCND1

11 May 2020 16:23:47,986 INFO : 28% Done

11 May 2020 16:23:48,062 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:48,062 INFO : Inserting EGFR

11 May 2020 16:23:48,064 INFO : 33% Done

11 May 2020 16:23:48,107 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:48,107 INFO : Inserting ERG_pan

11 May 2020 16:23:48,109 INFO : 39% Done

11 May 2020 16:23:48,168 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:48,168 INFO : Inserting FOLH1

11 May 2020 16:23:48,170 INFO : 44% Done

11 May 2020 16:23:48,208 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:48,208 INFO : Inserting MMP9

11 May 2020 16:23:48,210 INFO : 49% Done

11 May 2020 16:23:48,271 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:48,272 INFO : Inserting MUC1

11 May 2020 16:23:48,273 INFO : 53% Done

11 May 2020 16:23:48,316 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:48,316 INFO : Inserting NCOA2

11 May 2020 16:23:48,318 INFO : 60% Done

11 May 2020 16:23:48,371 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:48,371 INFO : Inserting PSA

11 May 2020 16:23:48,373 INFO : 65% Done

11 May 2020 16:23:48,432 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:48,433 INFO : 66% Done

11 May 2020 16:23:48,433 INFO : Inserting SMAD4

11 May 2020 16:23:48,435 INFO : 71% Done

11 May 2020 16:23:48,481 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:48,482 INFO : Inserting SPINK1

11 May 2020 16:23:48,483 INFO : 75% Done

11 May 2020 16:23:48,539 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:48,539 INFO : 77% Done

11 May 2020 16:23:48,539 INFO : Inserting SPRC

11 May 2020 16:23:48,541 INFO : 81% Done

11 May 2020 16:23:48,592 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:48,592 INFO : 83% Done

11 May 2020 16:23:48,592 INFO : Inserting TFF3

11 May 2020 16:23:48,594 INFO : 89% Done

11 May 2020 16:23:48,643 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:48,644 INFO : Inserting TGFB1

11 May 2020 16:23:48,645 INFO : 93% Done

11 May 2020 16:23:48,674 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:48,674 INFO : Inserting VEGFA

11 May 2020 16:23:48,676 INFO : 98% Done

11 May 2020 16:23:48,725 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:48,725 INFO : Done parsing Skyline document.

11 May 2020 16:23:48,727 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:23:48,745 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:23:48,786 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:23:48,802 INFO : Cleaning up temp tables

11 May 2020 16:23:49,235 INFO : Completed import of Skyline document from CPDR-FFPE-ID-532_2020-01-28_13-36-13.sky.zip

11 May 2020 16:23:49,236 INFO : 100% Done

11 May 2020 16:23:49,243 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80264/CPDR-FFPE-ID-532_2020-01-28_13-36-13.sky.zip into the system

11 May 2020 16:23:49,243 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80270/CPDR-FFPE-ID-627_2020-01-28_13-37-23/CPDR-FFPE-ID-627.skyd into the system

11 May 2020 16:23:49,244 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80270/CPDR-FFPE-ID-627_2020-01-28_13-37-23/CPDR-FFPE-ID-627.skyd into the system

11 May 2020 16:23:49,244 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80270/CPDR-FFPE-ID-627_2020-01-28_13-37-23.sky.zip into the system

11 May 2020 16:23:49,247 INFO : Starting import from CPDR-FFPE-ID-627_2020-01-28_13-37-23.sky.zip

11 May 2020 16:23:49,251 INFO : Starting to import Skyline document from CPDR-FFPE-ID-627_2020-01-28_13-37-23.sky.zip

11 May 2020 16:23:49,257 INFO : Expanding CPDR-FFPE-ID-627.skyd

11 May 2020 16:23:49,415 INFO : Expanding CPDR-FFPE-ID-627.sky.view

11 May 2020 16:23:49,416 INFO : Expanding CPDR-FFPE-ID-627.sky

11 May 2020 16:23:49,421 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:23:49,423 INFO : 5% Done

11 May 2020 16:23:49,571 INFO : Inserting ANXA2

11 May 2020 16:23:49,579 INFO : 15% Done

11 May 2020 16:23:49,737 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:49,737 INFO : Inserting CAMKK2

11 May 2020 16:23:49,740 INFO : 23% Done

11 May 2020 16:23:49,893 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:49,894 INFO : Inserting CCND1

11 May 2020 16:23:49,897 INFO : 30% Done

11 May 2020 16:23:50,026 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:50,026 INFO : Inserting EGFR

11 May 2020 16:23:50,028 INFO : 34% Done

11 May 2020 16:23:50,081 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:50,082 INFO : Inserting ERG_pan

11 May 2020 16:23:50,084 INFO : 40% Done

11 May 2020 16:23:50,196 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:50,196 INFO : Inserting FOLH1

11 May 2020 16:23:50,198 INFO : 43% Done

11 May 2020 16:23:50,233 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:50,233 INFO : Inserting MMP9

11 May 2020 16:23:50,235 INFO : 48% Done

11 May 2020 16:23:50,311 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:50,311 INFO : Inserting MUC1

11 May 2020 16:23:50,313 INFO : 51% Done

11 May 2020 16:23:50,353 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:50,353 INFO : Inserting NCOA2

11 May 2020 16:23:50,356 INFO : 56% Done

11 May 2020 16:23:50,448 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:50,448 INFO : Inserting PSA

11 May 2020 16:23:50,451 INFO : 63% Done

11 May 2020 16:23:50,535 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:50,535 INFO : Inserting SMAD4

11 May 2020 16:23:50,537 INFO : 69% Done

11 May 2020 16:23:50,610 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:50,610 INFO : Inserting SPINK1

11 May 2020 16:23:50,612 INFO : 74% Done

11 May 2020 16:23:50,739 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:50,739 INFO : Inserting SPRC

11 May 2020 16:23:50,741 INFO : 82% Done

11 May 2020 16:23:50,828 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:50,829 INFO : Inserting TFF3

11 May 2020 16:23:50,831 INFO : 88% Done

11 May 2020 16:23:50,911 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:50,911 INFO : Inserting TGFB1

11 May 2020 16:23:50,912 INFO : 90% Done

11 May 2020 16:23:50,945 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:50,945 INFO : Inserting VEGFA

11 May 2020 16:23:50,948 INFO : 98% Done

11 May 2020 16:23:51,045 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:51,046 INFO : Done parsing Skyline document.

11 May 2020 16:23:51,047 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:23:51,068 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:23:51,121 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:23:51,141 INFO : Cleaning up temp tables

11 May 2020 16:23:51,533 INFO : Completed import of Skyline document from CPDR-FFPE-ID-627_2020-01-28_13-37-23.sky.zip

11 May 2020 16:23:51,535 INFO : 100% Done

11 May 2020 16:23:51,548 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80270/CPDR-FFPE-ID-627_2020-01-28_13-37-23.sky.zip into the system

11 May 2020 16:23:51,549 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80271/CPDR-FFPE-ID-541_2020-01-28_13-37-38/CPDR-FFPE-ID-541.skyd into the system

11 May 2020 16:23:51,550 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80271/CPDR-FFPE-ID-541_2020-01-28_13-37-38/CPDR-FFPE-ID-541.skyd into the system

11 May 2020 16:23:51,550 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80271/CPDR-FFPE-ID-541_2020-01-28_13-37-38.sky.zip into the system

11 May 2020 16:23:51,553 INFO : Starting import from CPDR-FFPE-ID-541_2020-01-28_13-37-38.sky.zip

11 May 2020 16:23:51,560 INFO : Starting to import Skyline document from CPDR-FFPE-ID-541_2020-01-28_13-37-38.sky.zip

11 May 2020 16:23:51,569 INFO : Expanding CPDR-FFPE-ID-541.skyd

11 May 2020 16:23:51,806 INFO : Expanding CPDR-FFPE-ID-541.sky.view

11 May 2020 16:23:51,807 INFO : Expanding CPDR-FFPE-ID-541.sky

11 May 2020 16:23:51,816 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:23:51,819 INFO : 5% Done

11 May 2020 16:23:52,065 INFO : Inserting ANXA2

11 May 2020 16:23:52,073 INFO : 15% Done

11 May 2020 16:23:52,199 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:52,199 INFO : Inserting CAMKK2

11 May 2020 16:23:52,202 INFO : 22% Done

11 May 2020 16:23:52,308 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:52,308 INFO : Inserting CCND1

11 May 2020 16:23:52,311 INFO : 29% Done

11 May 2020 16:23:52,427 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:52,428 INFO : Inserting EGFR

11 May 2020 16:23:52,430 INFO : 33% Done

11 May 2020 16:23:52,495 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:52,496 INFO : Inserting ERG_pan

11 May 2020 16:23:52,498 INFO : 39% Done

11 May 2020 16:23:52,579 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:52,579 INFO : Inserting FOLH1

11 May 2020 16:23:52,580 INFO : 42% Done

11 May 2020 16:23:52,625 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:52,625 INFO : Inserting MMP9

11 May 2020 16:23:52,627 INFO : 47% Done

11 May 2020 16:23:52,708 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:52,709 INFO : Inserting MUC1

11 May 2020 16:23:52,710 INFO : 51% Done

11 May 2020 16:23:52,766 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:52,766 INFO : Inserting NCOA2

11 May 2020 16:23:52,768 INFO : 57% Done

11 May 2020 16:23:52,860 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:52,860 INFO : Inserting PSA

11 May 2020 16:23:52,862 INFO : 63% Done

11 May 2020 16:23:52,946 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:52,947 INFO : Inserting SMAD4

11 May 2020 16:23:52,949 INFO : 69% Done

11 May 2020 16:23:53,035 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:53,035 INFO : Inserting SPINK1

11 May 2020 16:23:53,037 INFO : 75% Done

11 May 2020 16:23:53,140 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:53,140 INFO : Inserting SPRC

11 May 2020 16:23:53,142 INFO : 83% Done

11 May 2020 16:23:53,241 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:53,241 INFO : Inserting TFF3

11 May 2020 16:23:53,243 INFO : 89% Done

11 May 2020 16:23:53,328 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:53,328 INFO : Inserting TGFB1

11 May 2020 16:23:53,329 INFO : 91% Done

11 May 2020 16:23:53,363 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:53,363 INFO : Inserting VEGFA

11 May 2020 16:23:53,364 INFO : 98% Done

11 May 2020 16:23:53,470 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:53,470 INFO : Done parsing Skyline document.

11 May 2020 16:23:53,472 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:23:53,501 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:23:53,571 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:23:53,598 INFO : Cleaning up temp tables

11 May 2020 16:23:54,272 INFO : Completed import of Skyline document from CPDR-FFPE-ID-541_2020-01-28_13-37-38.sky.zip

11 May 2020 16:23:54,273 INFO : 100% Done

11 May 2020 16:23:54,287 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80271/CPDR-FFPE-ID-541_2020-01-28_13-37-38.sky.zip into the system

11 May 2020 16:23:54,287 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80279/CPDR-FFPE-ID-631_2020-01-28_13-41-19/CPDR-FFPE-ID-631.skyd into the system

11 May 2020 16:23:54,288 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80279/CPDR-FFPE-ID-631_2020-01-28_13-41-19/CPDR-FFPE-ID-631.skyd into the system

11 May 2020 16:23:54,288 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80279/CPDR-FFPE-ID-631_2020-01-28_13-41-19.sky.zip into the system

11 May 2020 16:23:54,292 INFO : Starting import from CPDR-FFPE-ID-631_2020-01-28_13-41-19.sky.zip

11 May 2020 16:23:54,299 INFO : Starting to import Skyline document from CPDR-FFPE-ID-631_2020-01-28_13-41-19.sky.zip

11 May 2020 16:23:54,308 INFO : Expanding CPDR-FFPE-ID-631.skyd

11 May 2020 16:23:54,551 INFO : Expanding CPDR-FFPE-ID-631.sky.view

11 May 2020 16:23:54,552 INFO : Expanding CPDR-FFPE-ID-631.sky

11 May 2020 16:23:54,560 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:23:54,563 INFO : 6% Done

11 May 2020 16:23:54,711 INFO : Inserting ANXA2

11 May 2020 16:23:54,719 INFO : 16% Done

11 May 2020 16:23:54,832 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:54,833 INFO : Inserting CAMKK2

11 May 2020 16:23:54,835 INFO : 22% Done

11 May 2020 16:23:54,936 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:54,937 INFO : 23% Done

11 May 2020 16:23:54,937 INFO : Inserting CCND1

11 May 2020 16:23:54,939 INFO : 27% Done

11 May 2020 16:23:55,020 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:55,021 INFO : Inserting EGFR

11 May 2020 16:23:55,023 INFO : 35% Done

11 May 2020 16:23:55,141 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:55,141 INFO : Inserting ERG_pan

11 May 2020 16:23:55,144 INFO : 43% Done

11 May 2020 16:23:55,261 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:55,261 INFO : Inserting FOLH1

11 May 2020 16:23:55,263 INFO : 48% Done

11 May 2020 16:23:55,340 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:55,340 INFO : Inserting MMP9

11 May 2020 16:23:55,344 INFO : 58% Done

11 May 2020 16:23:55,484 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:55,484 INFO : 59% Done

11 May 2020 16:23:55,484 INFO : Inserting MUC1

11 May 2020 16:23:55,487 INFO : 64% Done

11 May 2020 16:23:55,567 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:55,567 INFO : Inserting NCOA2

11 May 2020 16:23:55,570 INFO : 70% Done

11 May 2020 16:23:55,647 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:55,647 INFO : Inserting PSA

11 May 2020 16:23:55,650 INFO : 74% Done

11 May 2020 16:23:55,700 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:55,700 INFO : Inserting SMAD4

11 May 2020 16:23:55,703 INFO : 77% Done

11 May 2020 16:23:55,781 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:55,781 INFO : 79% Done

11 May 2020 16:23:55,782 INFO : Inserting SPINK1

11 May 2020 16:23:55,784 INFO : 82% Done

11 May 2020 16:23:55,842 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:55,842 INFO : Inserting SPRC

11 May 2020 16:23:55,844 INFO : 86% Done

11 May 2020 16:23:55,903 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:55,903 INFO : Inserting TFF3

11 May 2020 16:23:55,905 INFO : 91% Done

11 May 2020 16:23:55,963 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:55,963 INFO : Inserting TGFB1

11 May 2020 16:23:55,964 INFO : 92% Done

11 May 2020 16:23:55,989 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:55,990 INFO : Inserting VEGFA

11 May 2020 16:23:55,992 INFO : 98% Done

11 May 2020 16:23:56,074 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:56,075 INFO : Done parsing Skyline document.

11 May 2020 16:23:56,076 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:23:56,103 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:23:56,164 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:23:56,187 INFO : Cleaning up temp tables

11 May 2020 16:23:56,668 INFO : Completed import of Skyline document from CPDR-FFPE-ID-631_2020-01-28_13-41-19.sky.zip

11 May 2020 16:23:56,669 INFO : 100% Done

11 May 2020 16:23:56,681 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80279/CPDR-FFPE-ID-631_2020-01-28_13-41-19.sky.zip into the system

11 May 2020 16:23:56,681 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80284/CPDR-FFPE-ID-610_2020-01-28_13-42-33/CPDR-FFPE-ID-610.skyd into the system

11 May 2020 16:23:56,684 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80284/CPDR-FFPE-ID-610_2020-01-28_13-42-33/CPDR-FFPE-ID-610.skyd into the system

11 May 2020 16:23:56,684 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80284/CPDR-FFPE-ID-610_2020-01-28_13-42-33.sky.zip into the system

11 May 2020 16:23:56,688 INFO : Starting import from CPDR-FFPE-ID-610_2020-01-28_13-42-33.sky.zip

11 May 2020 16:23:56,695 INFO : Starting to import Skyline document from CPDR-FFPE-ID-610_2020-01-28_13-42-33.sky.zip

11 May 2020 16:23:56,714 INFO : Expanding CPDR-FFPE-ID-610.skyd

11 May 2020 16:23:57,173 INFO : Expanding CPDR-FFPE-ID-610.sky.view

11 May 2020 16:23:57,174 INFO : Expanding CPDR-FFPE-ID-610.sky

11 May 2020 16:23:57,186 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:23:57,190 INFO : 6% Done

11 May 2020 16:23:57,473 INFO : Inserting ANXA2

11 May 2020 16:23:57,482 INFO : 14% Done

11 May 2020 16:23:57,645 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:57,645 INFO : Inserting CAMKK2

11 May 2020 16:23:57,648 INFO : 20% Done

11 May 2020 16:23:57,831 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:57,831 INFO : Inserting CCND1

11 May 2020 16:23:57,835 INFO : 25% Done

11 May 2020 16:23:57,958 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:57,958 INFO : Inserting EGFR

11 May 2020 16:23:57,962 INFO : 33% Done

11 May 2020 16:23:58,177 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:58,177 INFO : Inserting ERG_pan

11 May 2020 16:23:58,182 INFO : 43% Done

11 May 2020 16:23:58,407 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:58,408 INFO : Inserting FOLH1

11 May 2020 16:23:58,411 INFO : 48% Done

11 May 2020 16:23:58,551 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:58,551 INFO : Inserting MMP9

11 May 2020 16:23:58,556 INFO : 58% Done

11 May 2020 16:23:58,807 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:58,807 INFO : Inserting MUC1

11 May 2020 16:23:58,811 INFO : 65% Done

11 May 2020 16:23:58,984 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:58,984 INFO : Inserting NCOA2

11 May 2020 16:23:58,988 INFO : 71% Done

11 May 2020 16:23:59,126 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:59,126 INFO : Inserting PSA

11 May 2020 16:23:59,130 INFO : 74% Done

11 May 2020 16:23:59,238 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:59,239 INFO : Inserting SMAD4

11 May 2020 16:23:59,242 INFO : 79% Done

11 May 2020 16:23:59,372 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:59,372 INFO : Inserting SPINK1

11 May 2020 16:23:59,375 INFO : 83% Done

11 May 2020 16:23:59,473 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:59,474 INFO : Inserting SPRC

11 May 2020 16:23:59,477 INFO : 87% Done

11 May 2020 16:23:59,579 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:59,579 INFO : Inserting TFF3

11 May 2020 16:23:59,582 INFO : 90% Done

11 May 2020 16:23:59,681 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:59,681 INFO : Inserting TGFB1

11 May 2020 16:23:59,683 INFO : 92% Done

11 May 2020 16:23:59,723 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:59,723 INFO : Inserting VEGFA

11 May 2020 16:23:59,726 INFO : 98% Done

11 May 2020 16:23:59,877 DEBUG: Total peptides inserted: 1

11 May 2020 16:23:59,877 INFO : Done parsing Skyline document.

11 May 2020 16:23:59,879 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:23:59,916 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:24:00,041 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:24:00,110 INFO : Cleaning up temp tables

11 May 2020 16:24:00,121 INFO : Completed import of Skyline document from CPDR-FFPE-ID-610_2020-01-28_13-42-33.sky.zip

11 May 2020 16:24:00,122 INFO : 100% Done

11 May 2020 16:24:00,133 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80284/CPDR-FFPE-ID-610_2020-01-28_13-42-33.sky.zip into the system

11 May 2020 16:24:00,133 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80198/CPDR-FFPE-ID-391_2020-01-28_11-18-13/CPDR-FFPE-ID-391.skyd into the system

11 May 2020 16:24:00,135 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80198/CPDR-FFPE-ID-391_2020-01-28_11-18-13/CPDR-FFPE-ID-391.skyd into the system

11 May 2020 16:24:00,135 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80198/CPDR-FFPE-ID-391_2020-01-28_11-18-13.sky.zip into the system

11 May 2020 16:24:00,139 INFO : Starting import from CPDR-FFPE-ID-391_2020-01-28_11-18-13.sky.zip

11 May 2020 16:24:00,145 INFO : Starting to import Skyline document from CPDR-FFPE-ID-391_2020-01-28_11-18-13.sky.zip

11 May 2020 16:24:00,151 INFO : Expanding CPDR-FFPE-ID-391.skyd

11 May 2020 16:24:00,307 INFO : Expanding CPDR-FFPE-ID-391.sky.view

11 May 2020 16:24:00,308 INFO : Expanding CPDR-FFPE-ID-391.sky

11 May 2020 16:24:00,315 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1

11 May 2020 16:24:00,318 INFO : 6% Done

11 May 2020 16:24:00,423 INFO : 9% Done

11 May 2020 16:24:00,423 INFO : Inserting ANXA2

11 May 2020 16:24:00,430 INFO : 14% Done

11 May 2020 16:24:00,489 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:00,489 INFO : Inserting CAMKK2

11 May 2020 16:24:00,491 INFO : 19% Done

11 May 2020 16:24:00,550 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:00,550 INFO : Inserting CCND1

11 May 2020 16:24:00,553 INFO : 27% Done

11 May 2020 16:24:00,625 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:00,625 INFO : Inserting EGFR

11 May 2020 16:24:00,627 INFO : 30% Done

11 May 2020 16:24:00,676 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:00,676 INFO : 32% Done

11 May 2020 16:24:00,677 INFO : Inserting ERG_pan

11 May 2020 16:24:00,679 INFO : 41% Done

11 May 2020 16:24:00,774 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:00,774 INFO : Inserting FOLH1

11 May 2020 16:24:00,776 INFO : 44% Done

11 May 2020 16:24:00,815 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:00,815 INFO : Inserting MMP9

11 May 2020 16:24:00,817 INFO : 55% Done

11 May 2020 16:24:00,906 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:00,906 INFO : Inserting MUC1

11 May 2020 16:24:00,909 INFO : 58% Done

11 May 2020 16:24:00,949 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:00,949 INFO : Inserting NCOA2

11 May 2020 16:24:00,951 INFO : 63% Done

11 May 2020 16:24:00,992 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:00,992 INFO : Inserting PSA

11 May 2020 16:24:00,994 INFO : 70% Done

11 May 2020 16:24:01,063 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:01,063 INFO : Inserting SMAD4

11 May 2020 16:24:01,065 INFO : 74% Done

11 May 2020 16:24:01,112 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:01,112 INFO : Inserting SPINK1

11 May 2020 16:24:01,114 INFO : 80% Done

11 May 2020 16:24:01,171 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:01,171 INFO : Inserting SPRC

11 May 2020 16:24:01,185 INFO : 83% Done

11 May 2020 16:24:01,230 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:01,230 INFO : Inserting TFF3

11 May 2020 16:24:01,232 INFO : 92% Done

11 May 2020 16:24:01,300 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:01,300 INFO : Inserting TGFB1

11 May 2020 16:24:01,302 INFO : 93% Done

11 May 2020 16:24:01,327 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:01,327 INFO : Inserting VEGFA

11 May 2020 16:24:01,329 INFO : 98% Done

11 May 2020 16:24:01,379 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:01,379 INFO : Done parsing Skyline document.

11 May 2020 16:24:01,381 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:24:01,407 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:24:01,453 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:24:01,471 INFO : Cleaning up temp tables

11 May 2020 16:24:02,069 INFO : Completed import of Skyline document from CPDR-FFPE-ID-391_2020-01-28_11-18-13.sky.zip

11 May 2020 16:24:02,071 INFO : 100% Done

11 May 2020 16:24:02,082 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80198/CPDR-FFPE-ID-391_2020-01-28_11-18-13.sky.zip into the system

11 May 2020 16:24:02,082 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80200/CPDR-FFPE-ID-412_2020-01-28_11-18-44/CPDR-FFPE-ID-412.skyd into the system

11 May 2020 16:24:02,083 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80200/CPDR-FFPE-ID-412_2020-01-28_11-18-44/CPDR-FFPE-ID-412.skyd into the system

11 May 2020 16:24:02,083 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80200/CPDR-FFPE-ID-412_2020-01-28_11-18-44.sky.zip into the system

11 May 2020 16:24:02,087 INFO : Starting import from CPDR-FFPE-ID-412_2020-01-28_11-18-44.sky.zip

11 May 2020 16:24:02,093 INFO : Starting to import Skyline document from CPDR-FFPE-ID-412_2020-01-28_11-18-44.sky.zip

11 May 2020 16:24:02,105 INFO : Expanding CPDR-FFPE-ID-412.skyd

11 May 2020 16:24:02,379 INFO : Expanding CPDR-FFPE-ID-412.sky.view

11 May 2020 16:24:02,380 INFO : Expanding CPDR-FFPE-ID-412.sky

11 May 2020 16:24:02,389 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1

11 May 2020 16:24:02,393 INFO : 6% Done

11 May 2020 16:24:02,589 INFO : Inserting ANXA2

11 May 2020 16:24:02,597 INFO : 13% Done

11 May 2020 16:24:02,688 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:02,689 INFO : Inserting CAMKK2

11 May 2020 16:24:02,692 INFO : 20% Done

11 May 2020 16:24:02,787 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:02,787 INFO : Inserting CCND1

11 May 2020 16:24:02,790 INFO : 26% Done

11 May 2020 16:24:02,918 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:02,918 INFO : Inserting EGFR

11 May 2020 16:24:02,921 INFO : 31% Done

11 May 2020 16:24:03,005 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:03,005 INFO : Inserting ERG_pan

11 May 2020 16:24:03,008 INFO : 41% Done

11 May 2020 16:24:03,163 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:03,163 INFO : Inserting FOLH1

11 May 2020 16:24:03,165 INFO : 45% Done

11 May 2020 16:24:03,233 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:03,233 INFO : Inserting MMP9

11 May 2020 16:24:03,236 INFO : 55% Done

11 May 2020 16:24:03,397 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:03,397 INFO : Inserting MUC1

11 May 2020 16:24:03,399 INFO : 59% Done

11 May 2020 16:24:03,470 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:03,470 INFO : Inserting NCOA2

11 May 2020 16:24:03,473 INFO : 64% Done

11 May 2020 16:24:03,529 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:03,529 INFO : Inserting PSA

11 May 2020 16:24:03,532 INFO : 70% Done

11 May 2020 16:24:03,638 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:03,639 INFO : Inserting SMAD4

11 May 2020 16:24:03,641 INFO : 74% Done

11 May 2020 16:24:03,719 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:03,719 INFO : Inserting SPINK1

11 May 2020 16:24:03,722 INFO : 80% Done

11 May 2020 16:24:03,825 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:03,825 INFO : Inserting SPRC

11 May 2020 16:24:03,827 INFO : 84% Done

11 May 2020 16:24:03,893 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:03,893 INFO : Inserting TFF3

11 May 2020 16:24:03,896 INFO : 90% Done

11 May 2020 16:24:03,998 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:03,998 INFO : Inserting TGFB1

11 May 2020 16:24:04,000 INFO : 93% Done

11 May 2020 16:24:04,050 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:04,050 INFO : Inserting VEGFA

11 May 2020 16:24:04,053 INFO : 98% Done

11 May 2020 16:24:04,149 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:04,149 INFO : Done parsing Skyline document.

11 May 2020 16:24:04,152 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:24:04,181 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:24:04,248 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:24:04,273 INFO : Cleaning up temp tables

11 May 2020 16:24:04,762 INFO : Completed import of Skyline document from CPDR-FFPE-ID-412_2020-01-28_11-18-44.sky.zip

11 May 2020 16:24:04,764 INFO : 100% Done

11 May 2020 16:24:04,776 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80200/CPDR-FFPE-ID-412_2020-01-28_11-18-44.sky.zip into the system

11 May 2020 16:24:04,776 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80216/CPDR-FFPE-ID-413_2020-01-28_11-22-44/CPDR-FFPE-ID-413.skyd into the system

11 May 2020 16:24:04,777 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80216/CPDR-FFPE-ID-413_2020-01-28_11-22-44/CPDR-FFPE-ID-413.skyd into the system

11 May 2020 16:24:04,777 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80216/CPDR-FFPE-ID-413_2020-01-28_11-22-44.sky.zip into the system

11 May 2020 16:24:04,781 INFO : Starting import from CPDR-FFPE-ID-413_2020-01-28_11-22-44.sky.zip

11 May 2020 16:24:04,788 INFO : Starting to import Skyline document from CPDR-FFPE-ID-413_2020-01-28_11-22-44.sky.zip

11 May 2020 16:24:04,796 INFO : Expanding CPDR-FFPE-ID-413.skyd

11 May 2020 16:24:04,997 INFO : Expanding CPDR-FFPE-ID-413.sky.view

11 May 2020 16:24:04,998 INFO : Expanding CPDR-FFPE-ID-413.sky

11 May 2020 16:24:05,007 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1

11 May 2020 16:24:05,010 INFO : 6% Done

11 May 2020 16:24:05,164 INFO : Inserting ANXA2

11 May 2020 16:24:05,171 INFO : 12% Done

11 May 2020 16:24:05,254 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:05,254 INFO : 14% Done

11 May 2020 16:24:05,254 INFO : Inserting CAMKK2

11 May 2020 16:24:05,257 INFO : 19% Done

11 May 2020 16:24:05,334 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:05,334 INFO : Inserting CCND1

11 May 2020 16:24:05,336 INFO : 26% Done

11 May 2020 16:24:05,429 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:05,429 INFO : Inserting EGFR

11 May 2020 16:24:05,431 INFO : 31% Done

11 May 2020 16:24:05,539 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:05,539 INFO : Inserting ERG_pan

11 May 2020 16:24:05,542 INFO : 40% Done

11 May 2020 16:24:05,662 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:05,662 INFO : Inserting FOLH1

11 May 2020 16:24:05,664 INFO : 43% Done

11 May 2020 16:24:05,741 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:05,741 INFO : Inserting MMP9

11 May 2020 16:24:05,744 INFO : 53% Done

11 May 2020 16:24:05,862 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:05,863 INFO : Inserting MUC1

11 May 2020 16:24:05,865 INFO : 57% Done

11 May 2020 16:24:05,912 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:05,912 INFO : Inserting NCOA2

11 May 2020 16:24:05,915 INFO : 64% Done

11 May 2020 16:24:05,993 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:05,993 INFO : Inserting PSA

11 May 2020 16:24:05,995 INFO : 69% Done

11 May 2020 16:24:06,072 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:06,073 INFO : Inserting SMAD4

11 May 2020 16:24:06,075 INFO : 74% Done

11 May 2020 16:24:06,138 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:06,138 INFO : Inserting SPINK1

11 May 2020 16:24:06,141 INFO : 80% Done

11 May 2020 16:24:06,218 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:06,219 INFO : Inserting SPRC

11 May 2020 16:24:06,221 INFO : 84% Done

11 May 2020 16:24:06,283 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:06,284 INFO : Inserting TFF3

11 May 2020 16:24:06,286 INFO : 91% Done

11 May 2020 16:24:06,364 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:06,364 INFO : Inserting TGFB1

11 May 2020 16:24:06,366 INFO : 92% Done

11 May 2020 16:24:06,391 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:06,391 INFO : Inserting VEGFA

11 May 2020 16:24:06,393 INFO : 98% Done

11 May 2020 16:24:06,470 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:06,470 INFO : Done parsing Skyline document.

11 May 2020 16:24:06,472 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:24:06,499 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:24:06,569 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:24:06,589 INFO : Cleaning up temp tables

11 May 2020 16:24:07,079 INFO : Completed import of Skyline document from CPDR-FFPE-ID-413_2020-01-28_11-22-44.sky.zip

11 May 2020 16:24:07,081 INFO : 100% Done

11 May 2020 16:24:07,095 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80216/CPDR-FFPE-ID-413_2020-01-28_11-22-44.sky.zip into the system

11 May 2020 16:24:07,095 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80189/CPDR-FFPE-ID-535_2020-01-28_11-15-57/CPDR-FFPE-ID-535.skyd into the system

11 May 2020 16:24:07,097 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80189/CPDR-FFPE-ID-535_2020-01-28_11-15-57/CPDR-FFPE-ID-535.skyd into the system

11 May 2020 16:24:07,097 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80189/CPDR-FFPE-ID-535_2020-01-28_11-15-57.sky.zip into the system

11 May 2020 16:24:07,101 INFO : Starting import from CPDR-FFPE-ID-535_2020-01-28_11-15-57.sky.zip

11 May 2020 16:24:07,107 INFO : Starting to import Skyline document from CPDR-FFPE-ID-535_2020-01-28_11-15-57.sky.zip

11 May 2020 16:24:07,116 INFO : Expanding CPDR-FFPE-ID-535.skyd

11 May 2020 16:24:07,353 INFO : Expanding CPDR-FFPE-ID-535.sky.view

11 May 2020 16:24:07,354 INFO : Expanding CPDR-FFPE-ID-535.sky

11 May 2020 16:24:07,363 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1

11 May 2020 16:24:07,366 INFO : 6% Done

11 May 2020 16:24:07,533 INFO : Inserting ANXA2

11 May 2020 16:24:07,540 INFO : 12% Done

11 May 2020 16:24:07,620 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:07,620 INFO : Inserting CAMKK2

11 May 2020 16:24:07,622 INFO : 18% Done

11 May 2020 16:24:07,693 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:07,693 INFO : Inserting CCND1

11 May 2020 16:24:07,696 INFO : 24% Done

11 May 2020 16:24:07,782 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:07,782 INFO : Inserting EGFR

11 May 2020 16:24:07,786 INFO : 30% Done

11 May 2020 16:24:07,880 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:07,881 INFO : Inserting ERG_pan

11 May 2020 16:24:07,886 INFO : 42% Done

11 May 2020 16:24:08,058 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:08,058 INFO : Inserting FOLH1

11 May 2020 16:24:08,061 INFO : 47% Done

11 May 2020 16:24:08,133 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:08,133 INFO : Inserting MMP9

11 May 2020 16:24:08,136 INFO : 61% Done

11 May 2020 16:24:08,299 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:08,299 INFO : Inserting MUC1

11 May 2020 16:24:08,302 INFO : 66% Done

11 May 2020 16:24:08,429 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:08,429 INFO : Inserting NCOA2

11 May 2020 16:24:08,431 INFO : 69% Done

11 May 2020 16:24:08,480 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:08,480 INFO : Inserting PSA

11 May 2020 16:24:08,483 INFO : 74% Done

11 May 2020 16:24:08,561 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:08,562 INFO : Inserting SMAD4

11 May 2020 16:24:08,564 INFO : 77% Done

11 May 2020 16:24:08,629 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:08,629 INFO : Inserting SPINK1

11 May 2020 16:24:08,631 INFO : 83% Done

11 May 2020 16:24:08,705 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:08,705 INFO : Inserting SPRC

11 May 2020 16:24:08,707 INFO : 85% Done

11 May 2020 16:24:08,756 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:08,756 INFO : 86% Done

11 May 2020 16:24:08,756 INFO : Inserting TFF3

11 May 2020 16:24:08,759 INFO : 91% Done

11 May 2020 16:24:08,839 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:08,839 INFO : Inserting TGFB1

11 May 2020 16:24:08,841 INFO : 94% Done

11 May 2020 16:24:08,877 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:08,877 INFO : Inserting VEGFA

11 May 2020 16:24:08,879 INFO : 98% Done

11 May 2020 16:24:08,959 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:08,959 INFO : Done parsing Skyline document.

11 May 2020 16:24:08,961 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:24:08,989 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:24:09,045 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:24:09,066 INFO : Cleaning up temp tables

11 May 2020 16:24:09,543 INFO : Completed import of Skyline document from CPDR-FFPE-ID-535_2020-01-28_11-15-57.sky.zip

11 May 2020 16:24:09,545 INFO : 100% Done

11 May 2020 16:24:09,556 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80189/CPDR-FFPE-ID-535_2020-01-28_11-15-57.sky.zip into the system

11 May 2020 16:24:09,556 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80203/CPDR-FFPE-ID-417_2020-01-28_11-19-26/CPDR-FFPE-ID-417.skyd into the system

11 May 2020 16:24:09,558 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80203/CPDR-FFPE-ID-417_2020-01-28_11-19-26/CPDR-FFPE-ID-417.skyd into the system

11 May 2020 16:24:09,558 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80203/CPDR-FFPE-ID-417_2020-01-28_11-19-26.sky.zip into the system

11 May 2020 16:24:09,564 INFO : Starting import from CPDR-FFPE-ID-417_2020-01-28_11-19-26.sky.zip

11 May 2020 16:24:09,570 INFO : Starting to import Skyline document from CPDR-FFPE-ID-417_2020-01-28_11-19-26.sky.zip

11 May 2020 16:24:09,580 INFO : Expanding CPDR-FFPE-ID-417.skyd

11 May 2020 16:24:09,813 INFO : Expanding CPDR-FFPE-ID-417.sky.view

11 May 2020 16:24:09,814 INFO : Expanding CPDR-FFPE-ID-417.sky

11 May 2020 16:24:09,823 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1

11 May 2020 16:24:09,826 INFO : 6% Done

11 May 2020 16:24:09,970 INFO : Inserting ANXA2

11 May 2020 16:24:09,979 INFO : 13% Done

11 May 2020 16:24:10,093 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:10,093 INFO : Inserting CAMKK2

11 May 2020 16:24:10,095 INFO : 20% Done

11 May 2020 16:24:10,164 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:10,164 INFO : Inserting CCND1

11 May 2020 16:24:10,166 INFO : 25% Done

11 May 2020 16:24:10,227 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:10,227 INFO : Inserting EGFR

11 May 2020 16:24:10,229 INFO : 31% Done

11 May 2020 16:24:10,298 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:10,299 INFO : Inserting ERG_pan

11 May 2020 16:24:10,302 INFO : 42% Done

11 May 2020 16:24:10,428 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:10,428 INFO : Inserting FOLH1

11 May 2020 16:24:10,430 INFO : 47% Done

11 May 2020 16:24:10,491 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:10,492 INFO : Inserting MMP9

11 May 2020 16:24:10,495 INFO : 61% Done

11 May 2020 16:24:10,643 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:10,643 INFO : Inserting MUC1

11 May 2020 16:24:10,645 INFO : 66% Done

11 May 2020 16:24:10,712 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:10,712 INFO : Inserting NCOA2

11 May 2020 16:24:10,714 INFO : 69% Done

11 May 2020 16:24:10,757 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:10,757 INFO : Inserting PSA

11 May 2020 16:24:10,759 INFO : 74% Done

11 May 2020 16:24:10,818 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:10,818 INFO : Inserting SMAD4

11 May 2020 16:24:10,820 INFO : 77% Done

11 May 2020 16:24:10,876 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:10,876 INFO : Inserting SPINK1

11 May 2020 16:24:10,878 INFO : 83% Done

11 May 2020 16:24:10,933 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:10,933 INFO : Inserting SPRC

11 May 2020 16:24:10,935 INFO : 85% Done

11 May 2020 16:24:10,978 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:10,978 INFO : Inserting TFF3

11 May 2020 16:24:10,981 INFO : 91% Done

11 May 2020 16:24:11,047 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:11,047 INFO : Inserting TGFB1

11 May 2020 16:24:11,048 INFO : 93% Done

11 May 2020 16:24:11,073 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:11,073 INFO : Inserting VEGFA

11 May 2020 16:24:11,075 INFO : 98% Done

11 May 2020 16:24:11,137 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:11,137 INFO : Done parsing Skyline document.

11 May 2020 16:24:11,139 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:24:11,167 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:24:11,220 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:24:11,239 INFO : Cleaning up temp tables

11 May 2020 16:24:11,719 INFO : Completed import of Skyline document from CPDR-FFPE-ID-417_2020-01-28_11-19-26.sky.zip

11 May 2020 16:24:11,721 INFO : 100% Done

11 May 2020 16:24:11,733 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80203/CPDR-FFPE-ID-417_2020-01-28_11-19-26.sky.zip into the system

11 May 2020 16:24:11,733 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80204/CPDR-FFPE-ID-523_2020-01-28_11-19-42/CPDR-FFPE-ID-523.skyd into the system

11 May 2020 16:24:11,734 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80204/CPDR-FFPE-ID-523_2020-01-28_11-19-42/CPDR-FFPE-ID-523.skyd into the system

11 May 2020 16:24:11,734 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80204/CPDR-FFPE-ID-523_2020-01-28_11-19-42.sky.zip into the system

11 May 2020 16:24:11,739 INFO : Starting import from CPDR-FFPE-ID-523_2020-01-28_11-19-42.sky.zip

11 May 2020 16:24:11,745 INFO : Starting to import Skyline document from CPDR-FFPE-ID-523_2020-01-28_11-19-42.sky.zip

11 May 2020 16:24:11,756 INFO : Expanding CPDR-FFPE-ID-523.skyd

11 May 2020 16:24:12,012 INFO : Expanding CPDR-FFPE-ID-523.sky.view

11 May 2020 16:24:12,013 INFO : Expanding CPDR-FFPE-ID-523.sky

11 May 2020 16:24:12,022 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1

11 May 2020 16:24:12,025 INFO : 6% Done

11 May 2020 16:24:12,175 INFO : 9% Done

11 May 2020 16:24:12,175 INFO : Inserting ANXA2

11 May 2020 16:24:12,182 INFO : 14% Done

11 May 2020 16:24:12,259 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:12,260 INFO : Inserting CAMKK2

11 May 2020 16:24:12,262 INFO : 20% Done

11 May 2020 16:24:12,343 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:12,343 INFO : Inserting CCND1

11 May 2020 16:24:12,346 INFO : 25% Done

11 May 2020 16:24:12,422 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:12,422 INFO : Inserting EGFR

11 May 2020 16:24:12,424 INFO : 31% Done

11 May 2020 16:24:12,512 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:12,512 INFO : Inserting ERG_pan

11 May 2020 16:24:12,516 INFO : 43% Done

11 May 2020 16:24:12,666 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:12,666 INFO : Inserting FOLH1

11 May 2020 16:24:12,668 INFO : 49% Done

11 May 2020 16:24:12,739 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:12,739 INFO : Inserting MMP9

11 May 2020 16:24:12,742 INFO : 62% Done

11 May 2020 16:24:12,900 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:12,900 INFO : Inserting MUC1

11 May 2020 16:24:12,902 INFO : 67% Done

11 May 2020 16:24:12,965 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:12,965 INFO : Inserting NCOA2

11 May 2020 16:24:12,967 INFO : 69% Done

11 May 2020 16:24:13,003 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:13,004 INFO : Inserting PSA

11 May 2020 16:24:13,006 INFO : 74% Done

11 May 2020 16:24:13,068 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:13,068 INFO : Inserting SMAD4

11 May 2020 16:24:13,070 INFO : 78% Done

11 May 2020 16:24:13,132 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:13,132 INFO : Inserting SPINK1

11 May 2020 16:24:13,135 INFO : 83% Done

11 May 2020 16:24:13,193 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:13,193 INFO : Inserting SPRC

11 May 2020 16:24:13,195 INFO : 85% Done

11 May 2020 16:24:13,237 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:13,238 INFO : Inserting TFF3

11 May 2020 16:24:13,240 INFO : 92% Done

11 May 2020 16:24:13,301 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:13,301 INFO : Inserting TGFB1

11 May 2020 16:24:13,303 INFO : 93% Done

11 May 2020 16:24:13,327 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:13,327 INFO : Inserting VEGFA

11 May 2020 16:24:13,329 INFO : 98% Done

11 May 2020 16:24:13,401 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:13,401 INFO : Done parsing Skyline document.

11 May 2020 16:24:13,403 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:24:13,431 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:24:13,487 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:24:13,508 INFO : Cleaning up temp tables

11 May 2020 16:24:13,980 INFO : Completed import of Skyline document from CPDR-FFPE-ID-523_2020-01-28_11-19-42.sky.zip

11 May 2020 16:24:13,982 INFO : 100% Done

11 May 2020 16:24:13,995 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80204/CPDR-FFPE-ID-523_2020-01-28_11-19-42.sky.zip into the system

11 May 2020 16:24:13,995 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80205/CPDR-FFPE-ID-418_2020-01-28_11-19-57/CPDR-FFPE-ID-418.skyd into the system

11 May 2020 16:24:13,997 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80205/CPDR-FFPE-ID-418_2020-01-28_11-19-57/CPDR-FFPE-ID-418.skyd into the system

11 May 2020 16:24:13,997 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80205/CPDR-FFPE-ID-418_2020-01-28_11-19-57.sky.zip into the system

11 May 2020 16:24:14,001 INFO : Starting import from CPDR-FFPE-ID-418_2020-01-28_11-19-57.sky.zip

11 May 2020 16:24:14,009 INFO : Starting to import Skyline document from CPDR-FFPE-ID-418_2020-01-28_11-19-57.sky.zip

11 May 2020 16:24:14,016 INFO : Expanding CPDR-FFPE-ID-418.skyd

11 May 2020 16:24:14,210 INFO : Expanding CPDR-FFPE-ID-418.sky.view

11 May 2020 16:24:14,211 INFO : Expanding CPDR-FFPE-ID-418.sky

11 May 2020 16:24:14,219 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1

11 May 2020 16:24:14,222 INFO : 6% Done

11 May 2020 16:24:14,344 INFO : Inserting ANXA2

11 May 2020 16:24:14,352 INFO : 15% Done

11 May 2020 16:24:14,424 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:14,424 INFO : Inserting CAMKK2

11 May 2020 16:24:14,426 INFO : 21% Done

11 May 2020 16:24:14,495 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:14,495 INFO : Inserting CCND1

11 May 2020 16:24:14,497 INFO : 25% Done

11 May 2020 16:24:14,567 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:14,567 INFO : Inserting EGFR

11 May 2020 16:24:14,570 INFO : 31% Done

11 May 2020 16:24:14,627 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:14,628 INFO : Inserting ERG_pan

11 May 2020 16:24:14,631 INFO : 42% Done

11 May 2020 16:24:14,744 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:14,744 INFO : Inserting FOLH1

11 May 2020 16:24:14,746 INFO : 47% Done

11 May 2020 16:24:14,804 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:14,804 INFO : Inserting MMP9

11 May 2020 16:24:14,807 INFO : 58% Done

11 May 2020 16:24:14,925 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:14,925 INFO : Inserting MUC1

11 May 2020 16:24:14,928 INFO : 62% Done

11 May 2020 16:24:14,984 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:14,984 INFO : 64% Done

11 May 2020 16:24:14,984 INFO : Inserting NCOA2

11 May 2020 16:24:14,986 INFO : 66% Done

11 May 2020 16:24:15,028 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:15,028 INFO : Inserting PSA

11 May 2020 16:24:15,030 INFO : 72% Done

11 May 2020 16:24:15,091 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:15,091 INFO : Inserting SMAD4

11 May 2020 16:24:15,093 INFO : 76% Done

11 May 2020 16:24:15,144 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:15,144 INFO : Inserting SPINK1

11 May 2020 16:24:15,146 INFO : 80% Done

11 May 2020 16:24:15,203 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:15,203 INFO : Inserting SPRC

11 May 2020 16:24:15,205 INFO : 85% Done

11 May 2020 16:24:15,247 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:15,248 INFO : Inserting TFF3

11 May 2020 16:24:15,250 INFO : 90% Done

11 May 2020 16:24:15,312 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:15,312 INFO : Inserting TGFB1

11 May 2020 16:24:15,314 INFO : 93% Done

11 May 2020 16:24:15,337 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:15,337 INFO : Inserting VEGFA

11 May 2020 16:24:15,339 INFO : 98% Done

11 May 2020 16:24:15,406 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:15,406 INFO : Done parsing Skyline document.

11 May 2020 16:24:15,408 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:24:15,435 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:24:15,481 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:24:15,500 INFO : Cleaning up temp tables

11 May 2020 16:24:15,503 INFO : Completed import of Skyline document from CPDR-FFPE-ID-418_2020-01-28_11-19-57.sky.zip

11 May 2020 16:24:15,511 INFO : 100% Done

11 May 2020 16:24:15,522 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80205/CPDR-FFPE-ID-418_2020-01-28_11-19-57.sky.zip into the system

11 May 2020 16:24:15,523 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80201/CPDR-FFPE-ID-433_2020-01-28_11-19-00/CPDR-FFPE-ID-433.skyd into the system

11 May 2020 16:24:15,524 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80201/CPDR-FFPE-ID-433_2020-01-28_11-19-00/CPDR-FFPE-ID-433.skyd into the system

11 May 2020 16:24:15,524 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80201/CPDR-FFPE-ID-433_2020-01-28_11-19-00.sky.zip into the system

11 May 2020 16:24:15,528 INFO : Starting import from CPDR-FFPE-ID-433_2020-01-28_11-19-00.sky.zip

11 May 2020 16:24:15,535 INFO : Starting to import Skyline document from CPDR-FFPE-ID-433_2020-01-28_11-19-00.sky.zip

11 May 2020 16:24:15,541 INFO : Expanding CPDR-FFPE-ID-433.skyd

11 May 2020 16:24:15,692 INFO : Expanding CPDR-FFPE-ID-433.sky.view

11 May 2020 16:24:15,693 INFO : Expanding CPDR-FFPE-ID-433.sky

11 May 2020 16:24:15,701 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1

11 May 2020 16:24:15,703 INFO : 6% Done

11 May 2020 16:24:15,807 INFO : 9% Done

11 May 2020 16:24:15,807 INFO : Inserting ANXA2

11 May 2020 16:24:15,814 INFO : 14% Done

11 May 2020 16:24:15,869 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:15,869 INFO : Inserting CAMKK2

11 May 2020 16:24:15,871 INFO : 19% Done

11 May 2020 16:24:15,925 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:15,925 INFO : Inserting CCND1

11 May 2020 16:24:15,927 INFO : 27% Done

11 May 2020 16:24:15,998 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:15,998 INFO : Inserting EGFR

11 May 2020 16:24:16,000 INFO : 32% Done

11 May 2020 16:24:16,046 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:16,046 INFO : Inserting ERG_pan

11 May 2020 16:24:16,049 INFO : 40% Done

11 May 2020 16:24:16,138 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:16,138 INFO : Inserting FOLH1

11 May 2020 16:24:16,139 INFO : 46% Done

11 May 2020 16:24:16,175 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:16,175 INFO : Inserting MMP9

11 May 2020 16:24:16,178 INFO : 54% Done

11 May 2020 16:24:16,264 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:16,264 INFO : Inserting MUC1

11 May 2020 16:24:16,265 INFO : 59% Done

11 May 2020 16:24:16,303 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:16,303 INFO : Inserting NCOA2

11 May 2020 16:24:16,305 INFO : 63% Done

11 May 2020 16:24:16,345 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:16,345 INFO : Inserting PSA

11 May 2020 16:24:16,347 INFO : 70% Done

11 May 2020 16:24:16,410 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:16,410 INFO : Inserting SMAD4

11 May 2020 16:24:16,412 INFO : 73% Done

11 May 2020 16:24:16,452 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:16,452 INFO : Inserting SPINK1

11 May 2020 16:24:16,454 INFO : 79% Done

11 May 2020 16:24:16,510 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:16,510 INFO : Inserting SPRC

11 May 2020 16:24:16,512 INFO : 84% Done

11 May 2020 16:24:16,555 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:16,556 INFO : Inserting TFF3

11 May 2020 16:24:16,558 INFO : 91% Done

11 May 2020 16:24:16,620 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:16,620 INFO : Inserting TGFB1

11 May 2020 16:24:16,621 INFO : 93% Done

11 May 2020 16:24:16,645 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:16,645 INFO : Inserting VEGFA

11 May 2020 16:24:16,647 INFO : 98% Done

11 May 2020 16:24:16,702 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:16,702 INFO : Done parsing Skyline document.

11 May 2020 16:24:16,704 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:24:16,730 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:24:16,777 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:24:16,794 INFO : Cleaning up temp tables

11 May 2020 16:24:16,798 INFO : Completed import of Skyline document from CPDR-FFPE-ID-433_2020-01-28_11-19-00.sky.zip

11 May 2020 16:24:16,805 INFO : 100% Done

11 May 2020 16:24:16,816 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80201/CPDR-FFPE-ID-433_2020-01-28_11-19-00.sky.zip into the system

11 May 2020 16:24:16,816 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80208/CPDR-FFPE-ID-506_2020-01-28_11-20-37/CPDR-FFPE-ID-506.skyd into the system

11 May 2020 16:24:16,817 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80208/CPDR-FFPE-ID-506_2020-01-28_11-20-37/CPDR-FFPE-ID-506.skyd into the system

11 May 2020 16:24:16,817 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80208/CPDR-FFPE-ID-506_2020-01-28_11-20-37.sky.zip into the system

11 May 2020 16:24:16,822 INFO : Starting import from CPDR-FFPE-ID-506_2020-01-28_11-20-37.sky.zip

11 May 2020 16:24:16,828 INFO : Starting to import Skyline document from CPDR-FFPE-ID-506_2020-01-28_11-20-37.sky.zip

11 May 2020 16:24:16,838 INFO : Expanding CPDR-FFPE-ID-506.skyd

11 May 2020 16:24:17,085 INFO : Expanding CPDR-FFPE-ID-506.sky.view

11 May 2020 16:24:17,086 INFO : Expanding CPDR-FFPE-ID-506.sky

11 May 2020 16:24:17,095 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1

11 May 2020 16:24:17,098 INFO : 6% Done

11 May 2020 16:24:17,250 INFO : 8% Done

11 May 2020 16:24:17,250 INFO : Inserting ANXA2

11 May 2020 16:24:17,257 INFO : 14% Done

11 May 2020 16:24:17,335 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:17,335 INFO : Inserting CAMKK2

11 May 2020 16:24:17,338 INFO : 20% Done

11 May 2020 16:24:17,468 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:17,468 INFO : Inserting CCND1

11 May 2020 16:24:17,471 INFO : 27% Done

11 May 2020 16:24:17,563 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:17,563 INFO : Inserting EGFR

11 May 2020 16:24:17,566 INFO : 33% Done

11 May 2020 16:24:17,646 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:17,646 INFO : Inserting ERG_pan

11 May 2020 16:24:17,649 INFO : 42% Done

11 May 2020 16:24:17,786 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:17,786 INFO : Inserting FOLH1

11 May 2020 16:24:17,788 INFO : 47% Done

11 May 2020 16:24:17,849 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:17,850 INFO : Inserting MMP9

11 May 2020 16:24:17,853 INFO : 58% Done

11 May 2020 16:24:17,999 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:17,999 INFO : Inserting MUC1

11 May 2020 16:24:18,001 INFO : 63% Done

11 May 2020 16:24:18,064 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:18,064 INFO : Inserting NCOA2

11 May 2020 16:24:18,066 INFO : 66% Done

11 May 2020 16:24:18,118 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:18,118 INFO : Inserting PSA

11 May 2020 16:24:18,120 INFO : 73% Done

11 May 2020 16:24:18,187 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:18,187 INFO : Inserting SMAD4

11 May 2020 16:24:18,189 INFO : 76% Done

11 May 2020 16:24:18,257 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:18,257 INFO : Inserting SPINK1

11 May 2020 16:24:18,259 INFO : 81% Done

11 May 2020 16:24:18,331 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:18,332 INFO : Inserting SPRC

11 May 2020 16:24:18,334 INFO : 85% Done

11 May 2020 16:24:18,388 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:18,388 INFO : Inserting TFF3

11 May 2020 16:24:18,390 INFO : 91% Done

11 May 2020 16:24:18,481 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:18,481 INFO : Inserting TGFB1

11 May 2020 16:24:18,483 INFO : 93% Done

11 May 2020 16:24:18,515 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:18,515 INFO : Inserting VEGFA

11 May 2020 16:24:18,518 INFO : 98% Done

11 May 2020 16:24:18,599 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:18,600 INFO : Done parsing Skyline document.

11 May 2020 16:24:18,602 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:24:18,631 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:24:18,690 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:24:18,712 INFO : Cleaning up temp tables

11 May 2020 16:24:18,722 INFO : Completed import of Skyline document from CPDR-FFPE-ID-506_2020-01-28_11-20-37.sky.zip

11 May 2020 16:24:18,723 INFO : 100% Done

11 May 2020 16:24:18,734 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80208/CPDR-FFPE-ID-506_2020-01-28_11-20-37.sky.zip into the system

11 May 2020 16:24:18,734 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80210/CPDR-FFPE-ID-492_2020-01-28_11-21-09/CPDR-FFPE-ID-492.skyd into the system

11 May 2020 16:24:18,735 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80210/CPDR-FFPE-ID-492_2020-01-28_11-21-09/CPDR-FFPE-ID-492.skyd into the system

11 May 2020 16:24:18,736 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80210/CPDR-FFPE-ID-492_2020-01-28_11-21-09.sky.zip into the system

11 May 2020 16:24:18,740 INFO : Starting import from CPDR-FFPE-ID-492_2020-01-28_11-21-09.sky.zip

11 May 2020 16:24:18,746 INFO : Starting to import Skyline document from CPDR-FFPE-ID-492_2020-01-28_11-21-09.sky.zip

11 May 2020 16:24:18,754 INFO : Expanding CPDR-FFPE-ID-492.skyd

11 May 2020 16:24:18,977 INFO : Expanding CPDR-FFPE-ID-492.sky.view

11 May 2020 16:24:18,978 INFO : Expanding CPDR-FFPE-ID-492.sky

11 May 2020 16:24:18,986 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1

11 May 2020 16:24:18,989 INFO : 6% Done

11 May 2020 16:24:19,132 INFO : Inserting ANXA2

11 May 2020 16:24:19,139 INFO : 13% Done

11 May 2020 16:24:19,210 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:19,211 INFO : Inserting CAMKK2

11 May 2020 16:24:19,213 INFO : 19% Done

11 May 2020 16:24:19,283 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:19,284 INFO : Inserting CCND1

11 May 2020 16:24:19,286 INFO : 25% Done

11 May 2020 16:24:19,370 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:19,370 INFO : Inserting EGFR

11 May 2020 16:24:19,373 INFO : 30% Done

11 May 2020 16:24:19,438 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:19,438 INFO : Inserting ERG_pan

11 May 2020 16:24:19,441 INFO : 41% Done

11 May 2020 16:24:19,566 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:19,567 INFO : Inserting FOLH1

11 May 2020 16:24:19,569 INFO : 45% Done

11 May 2020 16:24:19,625 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:19,625 INFO : Inserting MMP9

11 May 2020 16:24:19,628 INFO : 56% Done

11 May 2020 16:24:19,745 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:19,745 INFO : Inserting MUC1

11 May 2020 16:24:19,747 INFO : 59% Done

11 May 2020 16:24:19,801 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:19,801 INFO : Inserting NCOA2

11 May 2020 16:24:19,803 INFO : 63% Done

11 May 2020 16:24:19,849 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:19,849 INFO : Inserting PSA

11 May 2020 16:24:19,852 INFO : 70% Done

11 May 2020 16:24:19,936 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:19,936 INFO : Inserting SMAD4

11 May 2020 16:24:19,938 INFO : 74% Done

11 May 2020 16:24:19,998 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:19,998 INFO : Inserting SPINK1

11 May 2020 16:24:20,000 INFO : 79% Done

11 May 2020 16:24:20,078 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:20,078 INFO : Inserting SPRC

11 May 2020 16:24:20,080 INFO : 83% Done

11 May 2020 16:24:20,127 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:20,128 INFO : Inserting TFF3

11 May 2020 16:24:20,130 INFO : 91% Done

11 May 2020 16:24:20,213 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:20,213 INFO : Inserting TGFB1

11 May 2020 16:24:20,215 INFO : 93% Done

11 May 2020 16:24:20,250 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:20,250 INFO : Inserting VEGFA

11 May 2020 16:24:20,252 INFO : 98% Done

11 May 2020 16:24:20,321 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:20,321 INFO : Done parsing Skyline document.

11 May 2020 16:24:20,323 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:24:20,351 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:24:20,405 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:24:20,425 INFO : Cleaning up temp tables

11 May 2020 16:24:20,899 INFO : Completed import of Skyline document from CPDR-FFPE-ID-492_2020-01-28_11-21-09.sky.zip

11 May 2020 16:24:20,900 INFO : 100% Done

11 May 2020 16:24:20,912 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80210/CPDR-FFPE-ID-492_2020-01-28_11-21-09.sky.zip into the system

11 May 2020 16:24:20,913 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80218/CPDR-FFPE-ID-439_2020-01-28_13-09-32/CPDR-FFPE-ID-439.skyd into the system

11 May 2020 16:24:20,914 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80218/CPDR-FFPE-ID-439_2020-01-28_13-09-32/CPDR-FFPE-ID-439.skyd into the system

11 May 2020 16:24:20,914 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80218/CPDR-FFPE-ID-439_2020-01-28_13-09-32.sky.zip into the system

11 May 2020 16:24:20,918 INFO : Starting import from CPDR-FFPE-ID-439_2020-01-28_13-09-32.sky.zip

11 May 2020 16:24:20,925 INFO : Starting to import Skyline document from CPDR-FFPE-ID-439_2020-01-28_13-09-32.sky.zip

11 May 2020 16:24:20,939 INFO : Expanding CPDR-FFPE-ID-439.skyd

11 May 2020 16:24:21,365 INFO : Expanding CPDR-FFPE-ID-439.sky.view

11 May 2020 16:24:21,366 INFO : Expanding CPDR-FFPE-ID-439.sky

11 May 2020 16:24:21,375 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 16:24:21,378 INFO : 10% Done

11 May 2020 16:24:21,639 INFO : Inserting ANXA2

11 May 2020 16:24:21,646 INFO : 20% Done

11 May 2020 16:24:21,731 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:21,731 INFO : Inserting CAMKK2

11 May 2020 16:24:21,734 INFO : 27% Done

11 May 2020 16:24:21,820 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:21,821 INFO : Inserting CCND1

11 May 2020 16:24:21,823 INFO : 33% Done

11 May 2020 16:24:21,894 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:21,894 INFO : Inserting EGFR

11 May 2020 16:24:21,896 INFO : 35% Done

11 May 2020 16:24:21,933 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:21,933 INFO : 37% Done

11 May 2020 16:24:21,933 INFO : Inserting ERG_pan

11 May 2020 16:24:21,935 INFO : 42% Done

11 May 2020 16:24:22,003 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:22,003 INFO : Inserting FOLH1

11 May 2020 16:24:22,005 INFO : 47% Done

11 May 2020 16:24:22,067 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:22,068 INFO : Inserting MMP9

11 May 2020 16:24:22,070 INFO : 53% Done

11 May 2020 16:24:22,144 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:22,144 INFO : Inserting MUC1

11 May 2020 16:24:22,146 INFO : 57% Done

11 May 2020 16:24:22,197 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:22,197 INFO : Inserting NCOA2

11 May 2020 16:24:22,199 INFO : 61% Done

11 May 2020 16:24:22,246 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:22,246 INFO : Inserting PSA

11 May 2020 16:24:22,248 INFO : 66% Done

11 May 2020 16:24:22,302 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:22,302 INFO : Inserting SMAD4

11 May 2020 16:24:22,304 INFO : 72% Done

11 May 2020 16:24:22,366 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:22,366 INFO : Inserting SPINK1

11 May 2020 16:24:22,368 INFO : 77% Done

11 May 2020 16:24:22,451 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:22,451 INFO : Inserting SPRC

11 May 2020 16:24:22,453 INFO : 84% Done

11 May 2020 16:24:22,532 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:22,532 INFO : Inserting TFF3

11 May 2020 16:24:22,535 INFO : 88% Done

11 May 2020 16:24:22,591 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:22,591 INFO : Inserting TGFB1

11 May 2020 16:24:22,593 INFO : 92% Done

11 May 2020 16:24:22,634 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:22,635 INFO : Inserting VEGFA

11 May 2020 16:24:22,637 INFO : 98% Done

11 May 2020 16:24:22,714 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:22,714 INFO : Done parsing Skyline document.

11 May 2020 16:24:22,716 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:24:22,743 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:24:22,791 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:24:22,808 INFO : Cleaning up temp tables

11 May 2020 16:24:22,817 INFO : Completed import of Skyline document from CPDR-FFPE-ID-439_2020-01-28_13-09-32.sky.zip

11 May 2020 16:24:22,819 INFO : 100% Done

11 May 2020 16:24:22,830 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80218/CPDR-FFPE-ID-439_2020-01-28_13-09-32.sky.zip into the system

11 May 2020 16:24:22,831 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80233/CPDR-FFPE-ID-438_2020-01-28_13-27-12/CPDR-FFPE-ID-438.skyd into the system

11 May 2020 16:24:22,832 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80233/CPDR-FFPE-ID-438_2020-01-28_13-27-12/CPDR-FFPE-ID-438.skyd into the system

11 May 2020 16:24:22,832 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80233/CPDR-FFPE-ID-438_2020-01-28_13-27-12.sky.zip into the system

11 May 2020 16:24:22,836 INFO : Starting import from CPDR-FFPE-ID-438_2020-01-28_13-27-12.sky.zip

11 May 2020 16:24:22,843 INFO : Starting to import Skyline document from CPDR-FFPE-ID-438_2020-01-28_13-27-12.sky.zip

11 May 2020 16:24:22,849 INFO : Expanding CPDR-FFPE-ID-438.skyd

11 May 2020 16:24:23,029 INFO : Expanding CPDR-FFPE-ID-438.sky.view

11 May 2020 16:24:23,030 INFO : Expanding CPDR-FFPE-ID-438.sky

11 May 2020 16:24:23,038 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:24:23,041 INFO : 6% Done

11 May 2020 16:24:23,199 INFO : Inserting ANXA2

11 May 2020 16:24:23,206 INFO : 13% Done

11 May 2020 16:24:23,273 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:23,273 INFO : Inserting CAMKK2

11 May 2020 16:24:23,275 INFO : 18% Done

11 May 2020 16:24:23,330 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:23,330 INFO : 19% Done

11 May 2020 16:24:23,330 INFO : Inserting CCND1

11 May 2020 16:24:23,333 INFO : 27% Done

11 May 2020 16:24:23,429 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:23,429 INFO : Inserting EGFR

11 May 2020 16:24:23,431 INFO : 30% Done

11 May 2020 16:24:23,480 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:23,480 INFO : 32% Done

11 May 2020 16:24:23,480 INFO : Inserting ERG_pan

11 May 2020 16:24:23,482 INFO : 39% Done

11 May 2020 16:24:23,568 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:23,568 INFO : Inserting FOLH1

11 May 2020 16:24:23,570 INFO : 42% Done

11 May 2020 16:24:23,628 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:23,628 INFO : 43% Done

11 May 2020 16:24:23,628 INFO : Inserting MMP9

11 May 2020 16:24:23,630 INFO : 51% Done

11 May 2020 16:24:23,712 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:23,713 INFO : Inserting MUC1

11 May 2020 16:24:23,715 INFO : 55% Done

11 May 2020 16:24:23,761 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:23,761 INFO : Inserting NCOA2

11 May 2020 16:24:23,763 INFO : 61% Done

11 May 2020 16:24:23,822 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:23,822 INFO : Inserting PSA

11 May 2020 16:24:23,825 INFO : 67% Done

11 May 2020 16:24:23,899 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:23,899 INFO : Inserting SMAD4

11 May 2020 16:24:23,901 INFO : 72% Done

11 May 2020 16:24:23,946 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:23,946 INFO : Inserting SPINK1

11 May 2020 16:24:23,949 INFO : 78% Done

11 May 2020 16:24:24,029 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:24,029 INFO : Inserting SPRC

11 May 2020 16:24:24,031 INFO : 82% Done

11 May 2020 16:24:24,093 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:24,093 INFO : Inserting TFF3

11 May 2020 16:24:24,095 INFO : 90% Done

11 May 2020 16:24:24,173 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:24,174 INFO : 91% Done

11 May 2020 16:24:24,174 INFO : Inserting TGFB1

11 May 2020 16:24:24,175 INFO : 93% Done

11 May 2020 16:24:24,206 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:24,207 INFO : Inserting VEGFA

11 May 2020 16:24:24,209 INFO : 98% Done

11 May 2020 16:24:24,268 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:24,268 INFO : Done parsing Skyline document.

11 May 2020 16:24:24,271 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:24:24,298 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:24:24,344 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:24:24,361 INFO : Cleaning up temp tables

11 May 2020 16:24:24,371 INFO : Completed import of Skyline document from CPDR-FFPE-ID-438_2020-01-28_13-27-12.sky.zip

11 May 2020 16:24:24,372 INFO : 100% Done

11 May 2020 16:24:24,384 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80233/CPDR-FFPE-ID-438_2020-01-28_13-27-12.sky.zip into the system

11 May 2020 16:24:24,384 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80239/CPDR-FFPE-ID-616_2020-01-28_13-30-58/CPDR-FFPE-ID-616.skyd into the system

11 May 2020 16:24:24,385 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80239/CPDR-FFPE-ID-616_2020-01-28_13-30-58/CPDR-FFPE-ID-616.skyd into the system

11 May 2020 16:24:24,385 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80239/CPDR-FFPE-ID-616_2020-01-28_13-30-58.sky.zip into the system

11 May 2020 16:24:24,389 INFO : Starting import from CPDR-FFPE-ID-616_2020-01-28_13-30-58.sky.zip

11 May 2020 16:24:24,396 INFO : Starting to import Skyline document from CPDR-FFPE-ID-616_2020-01-28_13-30-58.sky.zip

11 May 2020 16:24:24,401 INFO : Expanding CPDR-FFPE-ID-616.skyd

11 May 2020 16:24:24,526 INFO : Expanding CPDR-FFPE-ID-616.sky.view

11 May 2020 16:24:24,527 INFO : Expanding CPDR-FFPE-ID-616.sky

11 May 2020 16:24:24,534 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:24:24,537 INFO : 6% Done

11 May 2020 16:24:24,637 INFO : Inserting ANXA2

11 May 2020 16:24:24,644 INFO : 14% Done

11 May 2020 16:24:24,695 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:24,695 INFO : Inserting CAMKK2

11 May 2020 16:24:24,697 INFO : 20% Done

11 May 2020 16:24:24,743 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:24,743 INFO : Inserting CCND1

11 May 2020 16:24:24,746 INFO : 27% Done

11 May 2020 16:24:24,819 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:24,819 INFO : Inserting EGFR

11 May 2020 16:24:24,821 INFO : 31% Done

11 May 2020 16:24:24,859 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:24,859 INFO : Inserting ERG_pan

11 May 2020 16:24:24,862 INFO : 40% Done

11 May 2020 16:24:24,925 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:24,926 INFO : Inserting FOLH1

11 May 2020 16:24:24,927 INFO : 44% Done

11 May 2020 16:24:24,967 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:24,967 INFO : Inserting MMP9

11 May 2020 16:24:24,969 INFO : 52% Done

11 May 2020 16:24:25,029 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:25,029 INFO : Inserting MUC1

11 May 2020 16:24:25,031 INFO : 56% Done

11 May 2020 16:24:25,071 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:25,071 INFO : Inserting NCOA2

11 May 2020 16:24:25,073 INFO : 60% Done

11 May 2020 16:24:25,113 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:25,113 INFO : Inserting PSA

11 May 2020 16:24:25,115 INFO : 68% Done

11 May 2020 16:24:25,172 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:25,172 INFO : Inserting SMAD4

11 May 2020 16:24:25,174 INFO : 72% Done

11 May 2020 16:24:25,214 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:25,215 INFO : Inserting SPINK1

11 May 2020 16:24:25,217 INFO : 79% Done

11 May 2020 16:24:25,277 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:25,277 INFO : Inserting SPRC

11 May 2020 16:24:25,279 INFO : 85% Done

11 May 2020 16:24:25,323 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:25,323 INFO : Inserting TFF3

11 May 2020 16:24:25,325 INFO : 89% Done

11 May 2020 16:24:25,373 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:25,373 INFO : Inserting TGFB1

11 May 2020 16:24:25,375 INFO : 93% Done

11 May 2020 16:24:25,405 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:25,406 INFO : Inserting VEGFA

11 May 2020 16:24:25,407 INFO : 98% Done

11 May 2020 16:24:25,454 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:25,454 INFO : Done parsing Skyline document.

11 May 2020 16:24:25,457 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:24:25,481 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:24:25,523 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:24:25,547 INFO : Cleaning up temp tables

11 May 2020 16:24:25,551 INFO : Completed import of Skyline document from CPDR-FFPE-ID-616_2020-01-28_13-30-58.sky.zip

11 May 2020 16:24:25,557 INFO : 100% Done

11 May 2020 16:24:25,568 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80239/CPDR-FFPE-ID-616_2020-01-28_13-30-58.sky.zip into the system

11 May 2020 16:24:25,569 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80220/CPDR-FFPE-ID-540_2020-01-28_13-23-57/CPDR-FFPE-ID-540.skyd into the system

11 May 2020 16:24:25,570 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80220/CPDR-FFPE-ID-540_2020-01-28_13-23-57/CPDR-FFPE-ID-540.skyd into the system

11 May 2020 16:24:25,570 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80220/CPDR-FFPE-ID-540_2020-01-28_13-23-57.sky.zip into the system

11 May 2020 16:24:25,574 INFO : Starting import from CPDR-FFPE-ID-540_2020-01-28_13-23-57.sky.zip

11 May 2020 16:24:25,580 INFO : Starting to import Skyline document from CPDR-FFPE-ID-540_2020-01-28_13-23-57.sky.zip

11 May 2020 16:24:25,588 INFO : Expanding CPDR-FFPE-ID-540.skyd

11 May 2020 16:24:25,793 INFO : Expanding CPDR-FFPE-ID-540.sky.view

11 May 2020 16:24:25,794 INFO : Expanding CPDR-FFPE-ID-540.sky

11 May 2020 16:24:25,803 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:24:25,806 INFO : 6% Done

11 May 2020 16:24:25,942 INFO : Inserting ANXA2

11 May 2020 16:24:25,949 INFO : 12% Done

11 May 2020 16:24:26,031 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:26,032 INFO : Inserting CAMKK2

11 May 2020 16:24:26,034 INFO : 18% Done

11 May 2020 16:24:26,107 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:26,107 INFO : Inserting CCND1

11 May 2020 16:24:26,110 INFO : 26% Done

11 May 2020 16:24:26,227 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:26,227 INFO : Inserting EGFR

11 May 2020 16:24:26,229 INFO : 31% Done

11 May 2020 16:24:26,285 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:26,285 INFO : Inserting ERG_pan

11 May 2020 16:24:26,288 INFO : 39% Done

11 May 2020 16:24:26,381 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:26,382 INFO : Inserting FOLH1

11 May 2020 16:24:26,384 INFO : 42% Done

11 May 2020 16:24:26,438 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:26,438 INFO : 43% Done

11 May 2020 16:24:26,438 INFO : Inserting MMP9

11 May 2020 16:24:26,441 INFO : 50% Done

11 May 2020 16:24:26,537 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:26,537 INFO : Inserting MUC1

11 May 2020 16:24:26,539 INFO : 54% Done

11 May 2020 16:24:26,593 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:26,593 INFO : Inserting NCOA2

11 May 2020 16:24:26,595 INFO : 60% Done

11 May 2020 16:24:26,670 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:26,670 INFO : Inserting PSA

11 May 2020 16:24:26,673 INFO : 67% Done

11 May 2020 16:24:26,776 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:26,776 INFO : Inserting SMAD4

11 May 2020 16:24:26,778 INFO : 71% Done

11 May 2020 16:24:26,838 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:26,838 INFO : Inserting SPINK1

11 May 2020 16:24:26,841 INFO : 78% Done

11 May 2020 16:24:26,941 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:26,941 INFO : Inserting SPRC

11 May 2020 16:24:26,944 INFO : 84% Done

11 May 2020 16:24:27,019 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:27,019 INFO : Inserting TFF3

11 May 2020 16:24:27,022 INFO : 91% Done

11 May 2020 16:24:27,111 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:27,111 INFO : Inserting TGFB1

11 May 2020 16:24:27,112 INFO : 93% Done

11 May 2020 16:24:27,145 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:27,146 INFO : Inserting VEGFA

11 May 2020 16:24:27,148 INFO : 98% Done

11 May 2020 16:24:27,220 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:27,220 INFO : Done parsing Skyline document.

11 May 2020 16:24:27,223 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:24:27,251 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:24:27,305 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:24:27,326 INFO : Cleaning up temp tables

11 May 2020 16:24:27,336 INFO : Completed import of Skyline document from CPDR-FFPE-ID-540_2020-01-28_13-23-57.sky.zip

11 May 2020 16:24:27,337 INFO : 100% Done

11 May 2020 16:24:27,348 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80220/CPDR-FFPE-ID-540_2020-01-28_13-23-57.sky.zip into the system

11 May 2020 16:24:27,348 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80223/CPDR-FFPE-ID-643_2020-01-28_13-24-59/CPDR-FFPE-ID-643.skyd into the system

11 May 2020 16:24:27,349 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80223/CPDR-FFPE-ID-643_2020-01-28_13-24-59/CPDR-FFPE-ID-643.skyd into the system

11 May 2020 16:24:27,349 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80223/CPDR-FFPE-ID-643_2020-01-28_13-24-59.sky.zip into the system

11 May 2020 16:24:27,354 INFO : Starting import from CPDR-FFPE-ID-643_2020-01-28_13-24-59.sky.zip

11 May 2020 16:24:27,360 INFO : Starting to import Skyline document from CPDR-FFPE-ID-643_2020-01-28_13-24-59.sky.zip

11 May 2020 16:24:27,368 INFO : Expanding CPDR-FFPE-ID-643.skyd

11 May 2020 16:24:27,575 INFO : Expanding CPDR-FFPE-ID-643.sky.view

11 May 2020 16:24:27,576 INFO : Expanding CPDR-FFPE-ID-643.sky

11 May 2020 16:24:27,584 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:24:27,589 INFO : 6% Done

11 May 2020 16:24:27,724 INFO : 8% Done

11 May 2020 16:24:27,724 INFO : Inserting ANXA2

11 May 2020 16:24:27,732 INFO : 14% Done

11 May 2020 16:24:27,816 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:27,816 INFO : Inserting CAMKK2

11 May 2020 16:24:27,819 INFO : 19% Done

11 May 2020 16:24:27,900 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:27,900 INFO : Inserting CCND1

11 May 2020 16:24:27,903 INFO : 28% Done

11 May 2020 16:24:28,040 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:28,040 INFO : Inserting EGFR

11 May 2020 16:24:28,043 INFO : 32% Done

11 May 2020 16:24:28,104 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:28,104 INFO : Inserting ERG_pan

11 May 2020 16:24:28,106 INFO : 37% Done

11 May 2020 16:24:28,175 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:28,175 INFO : Inserting FOLH1

11 May 2020 16:24:28,178 INFO : 41% Done

11 May 2020 16:24:28,239 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:28,239 INFO : Inserting MMP9

11 May 2020 16:24:28,241 INFO : 49% Done

11 May 2020 16:24:28,334 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:28,335 INFO : Inserting MUC1

11 May 2020 16:24:28,337 INFO : 53% Done

11 May 2020 16:24:28,389 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:28,390 INFO : Inserting NCOA2

11 May 2020 16:24:28,392 INFO : 59% Done

11 May 2020 16:24:28,469 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:28,469 INFO : Inserting PSA

11 May 2020 16:24:28,472 INFO : 66% Done

11 May 2020 16:24:28,571 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:28,571 INFO : Inserting SMAD4

11 May 2020 16:24:28,573 INFO : 70% Done

11 May 2020 16:24:28,632 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:28,633 INFO : 71% Done

11 May 2020 16:24:28,633 INFO : Inserting SPINK1

11 May 2020 16:24:28,635 INFO : 77% Done

11 May 2020 16:24:28,733 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:28,733 INFO : Inserting SPRC

11 May 2020 16:24:28,736 INFO : 82% Done

11 May 2020 16:24:28,816 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:28,816 INFO : Inserting TFF3

11 May 2020 16:24:28,818 INFO : 91% Done

11 May 2020 16:24:28,918 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:28,918 INFO : Inserting TGFB1

11 May 2020 16:24:28,920 INFO : 93% Done

11 May 2020 16:24:28,955 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:28,955 INFO : Inserting VEGFA

11 May 2020 16:24:28,957 INFO : 98% Done

11 May 2020 16:24:29,034 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:29,035 INFO : Done parsing Skyline document.

11 May 2020 16:24:29,037 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:24:29,065 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:24:29,120 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:24:29,142 INFO : Cleaning up temp tables

11 May 2020 16:24:29,152 INFO : Completed import of Skyline document from CPDR-FFPE-ID-643_2020-01-28_13-24-59.sky.zip

11 May 2020 16:24:29,153 INFO : 100% Done

11 May 2020 16:24:29,164 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80223/CPDR-FFPE-ID-643_2020-01-28_13-24-59.sky.zip into the system

11 May 2020 16:24:29,164 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80226/CPDR-FFPE-ID-471_2020-01-28_13-26-01/CPDR-FFPE-ID-471.skyd into the system

11 May 2020 16:24:29,165 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80226/CPDR-FFPE-ID-471_2020-01-28_13-26-01/CPDR-FFPE-ID-471.skyd into the system

11 May 2020 16:24:29,166 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80226/CPDR-FFPE-ID-471_2020-01-28_13-26-01.sky.zip into the system

11 May 2020 16:24:29,170 INFO : Starting import from CPDR-FFPE-ID-471_2020-01-28_13-26-01.sky.zip

11 May 2020 16:24:29,176 INFO : Starting to import Skyline document from CPDR-FFPE-ID-471_2020-01-28_13-26-01.sky.zip

11 May 2020 16:24:29,183 INFO : Expanding CPDR-FFPE-ID-471.skyd

11 May 2020 16:24:29,350 INFO : Expanding CPDR-FFPE-ID-471.sky.view

11 May 2020 16:24:29,351 INFO : Expanding CPDR-FFPE-ID-471.sky

11 May 2020 16:24:29,358 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:24:29,361 INFO : 6% Done

11 May 2020 16:24:29,479 INFO : Inserting ANXA2

11 May 2020 16:24:29,486 INFO : 14% Done

11 May 2020 16:24:29,562 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:29,563 INFO : Inserting CAMKK2

11 May 2020 16:24:29,565 INFO : 21% Done

11 May 2020 16:24:29,635 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:29,635 INFO : Inserting CCND1

11 May 2020 16:24:29,638 INFO : 29% Done

11 May 2020 16:24:29,731 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:29,731 INFO : Inserting EGFR

11 May 2020 16:24:29,733 INFO : 34% Done

11 May 2020 16:24:29,778 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:29,779 INFO : Inserting ERG_pan

11 May 2020 16:24:29,780 INFO : 37% Done

11 May 2020 16:24:29,823 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:29,823 INFO : Inserting FOLH1

11 May 2020 16:24:29,825 INFO : 42% Done

11 May 2020 16:24:29,864 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:29,864 INFO : Inserting MMP9

11 May 2020 16:24:29,866 INFO : 48% Done

11 May 2020 16:24:29,930 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:29,931 INFO : Inserting MUC1

11 May 2020 16:24:29,932 INFO : 52% Done

11 May 2020 16:24:29,970 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:29,970 INFO : Inserting NCOA2

11 May 2020 16:24:29,972 INFO : 58% Done

11 May 2020 16:24:30,038 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:30,039 INFO : Inserting PSA

11 May 2020 16:24:30,041 INFO : 64% Done

11 May 2020 16:24:30,116 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:30,117 INFO : Inserting SMAD4

11 May 2020 16:24:30,119 INFO : 69% Done

11 May 2020 16:24:30,180 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:30,180 INFO : Inserting SPINK1

11 May 2020 16:24:30,183 INFO : 76% Done

11 May 2020 16:24:30,276 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:30,277 INFO : Inserting SPRC

11 May 2020 16:24:30,279 INFO : 83% Done

11 May 2020 16:24:30,352 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:30,352 INFO : Inserting TFF3

11 May 2020 16:24:30,355 INFO : 89% Done

11 May 2020 16:24:30,422 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:30,422 INFO : Inserting TGFB1

11 May 2020 16:24:30,424 INFO : 92% Done

11 May 2020 16:24:30,459 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:30,459 INFO : Inserting VEGFA

11 May 2020 16:24:30,462 INFO : 98% Done

11 May 2020 16:24:30,539 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:30,539 INFO : Done parsing Skyline document.

11 May 2020 16:24:30,541 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:24:30,568 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:24:30,627 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:24:30,649 INFO : Cleaning up temp tables

11 May 2020 16:24:30,653 INFO : Completed import of Skyline document from CPDR-FFPE-ID-471_2020-01-28_13-26-01.sky.zip

11 May 2020 16:24:30,660 INFO : 100% Done

11 May 2020 16:24:30,671 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80226/CPDR-FFPE-ID-471_2020-01-28_13-26-01.sky.zip into the system

11 May 2020 16:24:30,671 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80229/CPDR-FFPE-ID-640_2020-01-28_13-26-33/CPDR-FFPE-ID-640.skyd into the system

11 May 2020 16:24:30,672 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80229/CPDR-FFPE-ID-640_2020-01-28_13-26-33/CPDR-FFPE-ID-640.skyd into the system

11 May 2020 16:24:30,672 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80229/CPDR-FFPE-ID-640_2020-01-28_13-26-33.sky.zip into the system

11 May 2020 16:24:30,677 INFO : Starting import from CPDR-FFPE-ID-640_2020-01-28_13-26-33.sky.zip

11 May 2020 16:24:30,684 INFO : Starting to import Skyline document from CPDR-FFPE-ID-640_2020-01-28_13-26-33.sky.zip

11 May 2020 16:24:30,691 INFO : Expanding CPDR-FFPE-ID-640.skyd

11 May 2020 16:24:30,878 INFO : Expanding CPDR-FFPE-ID-640.sky.view

11 May 2020 16:24:30,879 INFO : Expanding CPDR-FFPE-ID-640.sky

11 May 2020 16:24:30,887 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:24:30,890 INFO : 6% Done

11 May 2020 16:24:31,034 INFO : Inserting ANXA2

11 May 2020 16:24:31,041 INFO : 13% Done

11 May 2020 16:24:31,107 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:31,107 INFO : Inserting CAMKK2

11 May 2020 16:24:31,109 INFO : 18% Done

11 May 2020 16:24:31,176 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:31,176 INFO : Inserting CCND1

11 May 2020 16:24:31,179 INFO : 26% Done

11 May 2020 16:24:31,269 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:31,269 INFO : Inserting EGFR

11 May 2020 16:24:31,271 INFO : 32% Done

11 May 2020 16:24:31,339 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:31,340 INFO : Inserting ERG_pan

11 May 2020 16:24:31,342 INFO : 39% Done

11 May 2020 16:24:31,432 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:31,432 INFO : Inserting FOLH1

11 May 2020 16:24:31,434 INFO : 43% Done

11 May 2020 16:24:31,488 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:31,488 INFO : Inserting MMP9

11 May 2020 16:24:31,491 INFO : 51% Done

11 May 2020 16:24:31,583 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:31,583 INFO : Inserting MUC1

11 May 2020 16:24:31,585 INFO : 57% Done

11 May 2020 16:24:31,642 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:31,642 INFO : Inserting NCOA2

11 May 2020 16:24:31,644 INFO : 61% Done

11 May 2020 16:24:31,702 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:31,702 INFO : Inserting PSA

11 May 2020 16:24:31,705 INFO : 67% Done

11 May 2020 16:24:31,775 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:31,775 INFO : Inserting SMAD4

11 May 2020 16:24:31,777 INFO : 73% Done

11 May 2020 16:24:31,830 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:31,830 INFO : Inserting SPINK1

11 May 2020 16:24:31,832 INFO : 77% Done

11 May 2020 16:24:31,908 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:31,908 INFO : 79% Done

11 May 2020 16:24:31,908 INFO : Inserting SPRC

11 May 2020 16:24:31,910 INFO : 83% Done

11 May 2020 16:24:31,970 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:31,970 INFO : Inserting TFF3

11 May 2020 16:24:31,972 INFO : 90% Done

11 May 2020 16:24:32,047 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:32,048 INFO : Inserting TGFB1

11 May 2020 16:24:32,049 INFO : 93% Done

11 May 2020 16:24:32,080 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:32,080 INFO : Inserting VEGFA

11 May 2020 16:24:32,082 INFO : 98% Done

11 May 2020 16:24:32,155 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:32,155 INFO : Done parsing Skyline document.

11 May 2020 16:24:32,157 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:24:32,185 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:24:32,234 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:24:32,264 INFO : Cleaning up temp tables

11 May 2020 16:24:32,752 INFO : Completed import of Skyline document from CPDR-FFPE-ID-640_2020-01-28_13-26-33.sky.zip

11 May 2020 16:24:32,753 INFO : 100% Done

11 May 2020 16:24:32,765 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80229/CPDR-FFPE-ID-640_2020-01-28_13-26-33.sky.zip into the system

11 May 2020 16:24:32,766 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80232/CPDR-FFPE-ID-395_2020-01-28_13-27-01/CPDR-FFPE-ID-395.skyd into the system

11 May 2020 16:24:32,767 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80232/CPDR-FFPE-ID-395_2020-01-28_13-27-01/CPDR-FFPE-ID-395.skyd into the system

11 May 2020 16:24:32,767 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80232/CPDR-FFPE-ID-395_2020-01-28_13-27-01.sky.zip into the system

11 May 2020 16:24:32,771 INFO : Starting import from CPDR-FFPE-ID-395_2020-01-28_13-27-01.sky.zip

11 May 2020 16:24:32,778 INFO : Starting to import Skyline document from CPDR-FFPE-ID-395_2020-01-28_13-27-01.sky.zip

11 May 2020 16:24:32,796 INFO : Expanding CPDR-FFPE-ID-395.skyd

11 May 2020 16:24:33,180 INFO : Expanding CPDR-FFPE-ID-395.sky.view

11 May 2020 16:24:33,181 INFO : Expanding CPDR-FFPE-ID-395.sky

11 May 2020 16:24:33,191 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 16:24:33,195 INFO : 6% Done

11 May 2020 16:24:33,429 INFO : Inserting ANXA2

11 May 2020 16:24:33,437 INFO : 14% Done

11 May 2020 16:24:33,558 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:33,559 INFO : Inserting CAMKK2

11 May 2020 16:24:33,562 INFO : 21% Done

11 May 2020 16:24:33,680 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:33,680 INFO : Inserting CCND1

11 May 2020 16:24:33,683 INFO : 27% Done

11 May 2020 16:24:33,809 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:33,809 INFO : Inserting EGFR

11 May 2020 16:24:33,812 INFO : 32% Done

11 May 2020 16:24:33,922 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:33,922 INFO : Inserting ERG_pan

11 May 2020 16:24:33,926 INFO : 43% Done

11 May 2020 16:24:34,111 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:34,111 INFO : Inserting FOLH1

11 May 2020 16:24:34,113 INFO : 47% Done

11 May 2020 16:24:34,200 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:34,200 INFO : Inserting MMP9

11 May 2020 16:24:34,204 INFO : 57% Done

11 May 2020 16:24:34,396 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:34,396 INFO : Inserting MUC1

11 May 2020 16:24:34,398 INFO : 61% Done

11 May 2020 16:24:34,481 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:34,481 INFO : Inserting NCOA2

11 May 2020 16:24:34,484 INFO : 67% Done

11 May 2020 16:24:34,646 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:34,646 INFO : Inserting PSA

11 May 2020 16:24:34,648 INFO : 72% Done

11 May 2020 16:24:34,750 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:34,751 INFO : Inserting SMAD4

11 May 2020 16:24:34,753 INFO : 76% Done

11 May 2020 16:24:34,841 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:34,841 INFO : Inserting SPINK1

11 May 2020 16:24:34,844 INFO : 81% Done

11 May 2020 16:24:34,945 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:34,946 INFO : Inserting SPRC

11 May 2020 16:24:34,948 INFO : 85% Done

11 May 2020 16:24:35,034 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:35,034 INFO : Inserting TFF3

11 May 2020 16:24:35,036 INFO : 90% Done

11 May 2020 16:24:35,138 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:35,138 INFO : 91% Done

11 May 2020 16:24:35,138 INFO : Inserting TGFB1

11 May 2020 16:24:35,140 INFO : 93% Done

11 May 2020 16:24:35,178 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:35,178 INFO : Inserting VEGFA

11 May 2020 16:24:35,181 INFO : 98% Done

11 May 2020 16:24:35,295 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:35,295 INFO : Done parsing Skyline document.

11 May 2020 16:24:35,297 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:24:35,329 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:24:35,418 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:24:35,514 INFO : Cleaning up temp tables

11 May 2020 16:24:35,979 INFO : Completed import of Skyline document from CPDR-FFPE-ID-395_2020-01-28_13-27-01.sky.zip

11 May 2020 16:24:35,980 INFO : 100% Done

11 May 2020 16:24:35,993 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80232/CPDR-FFPE-ID-395_2020-01-28_13-27-01.sky.zip into the system

11 May 2020 16:24:35,993 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80237/CPDR-FFPE-ID-443_2020-01-28_13-30-36/CPDR-FFPE-ID-443.skyd into the system

11 May 2020 16:24:35,995 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80237/CPDR-FFPE-ID-443_2020-01-28_13-30-36/CPDR-FFPE-ID-443.skyd into the system

11 May 2020 16:24:35,995 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80237/CPDR-FFPE-ID-443_2020-01-28_13-30-36.sky.zip into the system

11 May 2020 16:24:35,998 INFO : Starting import from CPDR-FFPE-ID-443_2020-01-28_13-30-36.sky.zip

11 May 2020 16:24:36,006 INFO : Starting to import Skyline document from CPDR-FFPE-ID-443_2020-01-28_13-30-36.sky.zip

11 May 2020 16:24:36,016 INFO : Expanding CPDR-FFPE-ID-443.skyd

11 May 2020 16:24:36,262 INFO : Expanding CPDR-FFPE-ID-443.sky.view

11 May 2020 16:24:36,263 INFO : Expanding CPDR-FFPE-ID-443.sky

11 May 2020 16:24:36,272 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:24:36,275 INFO : 6% Done

11 May 2020 16:24:36,461 INFO : Inserting ANXA2

11 May 2020 16:24:36,468 INFO : 14% Done

11 May 2020 16:24:36,548 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:36,549 INFO : Inserting CAMKK2

11 May 2020 16:24:36,551 INFO : 20% Done

11 May 2020 16:24:36,634 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:36,634 INFO : Inserting CCND1

11 May 2020 16:24:36,636 INFO : 26% Done

11 May 2020 16:24:36,723 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:36,724 INFO : Inserting EGFR

11 May 2020 16:24:36,726 INFO : 31% Done

11 May 2020 16:24:36,793 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:36,793 INFO : 32% Done

11 May 2020 16:24:36,793 INFO : Inserting ERG_pan

11 May 2020 16:24:36,796 INFO : 41% Done

11 May 2020 16:24:36,914 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:36,914 INFO : Inserting FOLH1

11 May 2020 16:24:36,916 INFO : 46% Done

11 May 2020 16:24:36,985 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:36,985 INFO : Inserting MMP9

11 May 2020 16:24:36,988 INFO : 56% Done

11 May 2020 16:24:37,114 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:37,114 INFO : Inserting MUC1

11 May 2020 16:24:37,116 INFO : 61% Done

11 May 2020 16:24:37,183 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:37,184 INFO : Inserting NCOA2

11 May 2020 16:24:37,186 INFO : 67% Done

11 May 2020 16:24:37,248 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:37,248 INFO : Inserting PSA

11 May 2020 16:24:37,250 INFO : 72% Done

11 May 2020 16:24:37,337 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:37,337 INFO : Inserting SMAD4

11 May 2020 16:24:37,339 INFO : 76% Done

11 May 2020 16:24:37,403 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:37,403 INFO : Inserting SPINK1

11 May 2020 16:24:37,405 INFO : 81% Done

11 May 2020 16:24:37,473 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:37,474 INFO : Inserting SPRC

11 May 2020 16:24:37,476 INFO : 86% Done

11 May 2020 16:24:37,538 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:37,538 INFO : Inserting TFF3

11 May 2020 16:24:37,540 INFO : 91% Done

11 May 2020 16:24:37,629 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:37,629 INFO : Inserting TGFB1

11 May 2020 16:24:37,631 INFO : 92% Done

11 May 2020 16:24:37,660 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:37,660 INFO : Inserting VEGFA

11 May 2020 16:24:37,662 INFO : 98% Done

11 May 2020 16:24:37,736 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:37,736 INFO : Done parsing Skyline document.

11 May 2020 16:24:37,738 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:24:37,767 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:24:37,826 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:24:37,848 INFO : Cleaning up temp tables

11 May 2020 16:24:37,851 INFO : Completed import of Skyline document from CPDR-FFPE-ID-443_2020-01-28_13-30-36.sky.zip

11 May 2020 16:24:37,860 INFO : 100% Done

11 May 2020 16:24:37,872 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80237/CPDR-FFPE-ID-443_2020-01-28_13-30-36.sky.zip into the system

11 May 2020 16:24:37,872 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80244/CPDR-FFPE-ID-513_2020-01-28_13-31-54/CPDR-FFPE-ID-513.skyd into the system

11 May 2020 16:24:37,873 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80244/CPDR-FFPE-ID-513_2020-01-28_13-31-54/CPDR-FFPE-ID-513.skyd into the system

11 May 2020 16:24:37,874 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80244/CPDR-FFPE-ID-513_2020-01-28_13-31-54.sky.zip into the system

11 May 2020 16:24:37,878 INFO : Starting import from CPDR-FFPE-ID-513_2020-01-28_13-31-54.sky.zip

11 May 2020 16:24:37,884 INFO : Starting to import Skyline document from CPDR-FFPE-ID-513_2020-01-28_13-31-54.sky.zip

11 May 2020 16:24:37,890 INFO : Expanding CPDR-FFPE-ID-513.skyd

11 May 2020 16:24:38,015 INFO : Expanding CPDR-FFPE-ID-513.sky.view

11 May 2020 16:24:38,016 INFO : Expanding CPDR-FFPE-ID-513.sky

11 May 2020 16:24:38,023 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:24:38,025 INFO : 6% Done

11 May 2020 16:24:38,158 INFO : Inserting ANXA2

11 May 2020 16:24:38,165 INFO : 13% Done

11 May 2020 16:24:38,217 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:38,217 INFO : Inserting CAMKK2

11 May 2020 16:24:38,220 INFO : 19% Done

11 May 2020 16:24:38,273 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:38,273 INFO : Inserting CCND1

11 May 2020 16:24:38,276 INFO : 27% Done

11 May 2020 16:24:38,354 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:38,354 INFO : Inserting EGFR

11 May 2020 16:24:38,356 INFO : 31% Done

11 May 2020 16:24:38,395 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:38,395 INFO : Inserting ERG_pan

11 May 2020 16:24:38,397 INFO : 39% Done

11 May 2020 16:24:38,462 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:38,462 INFO : Inserting FOLH1

11 May 2020 16:24:38,464 INFO : 42% Done

11 May 2020 16:24:38,500 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:38,500 INFO : Inserting MMP9

11 May 2020 16:24:38,502 INFO : 50% Done

11 May 2020 16:24:38,562 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:38,562 INFO : Inserting MUC1

11 May 2020 16:24:38,564 INFO : 54% Done

11 May 2020 16:24:38,604 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:38,604 INFO : Inserting NCOA2

11 May 2020 16:24:38,606 INFO : 59% Done

11 May 2020 16:24:38,649 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:38,649 INFO : Inserting PSA

11 May 2020 16:24:38,651 INFO : 67% Done

11 May 2020 16:24:38,717 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:38,717 INFO : Inserting SMAD4

11 May 2020 16:24:38,718 INFO : 71% Done

11 May 2020 16:24:38,759 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:38,759 INFO : Inserting SPINK1

11 May 2020 16:24:38,761 INFO : 77% Done

11 May 2020 16:24:38,817 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:38,817 INFO : Inserting SPRC

11 May 2020 16:24:38,819 INFO : 81% Done

11 May 2020 16:24:38,866 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:38,866 INFO : Inserting TFF3

11 May 2020 16:24:38,868 INFO : 90% Done

11 May 2020 16:24:38,933 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:38,933 INFO : Inserting TGFB1

11 May 2020 16:24:38,934 INFO : 92% Done

11 May 2020 16:24:39,072 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:39,072 INFO : Inserting VEGFA

11 May 2020 16:24:39,074 INFO : 98% Done

11 May 2020 16:24:39,120 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:39,120 INFO : Done parsing Skyline document.

11 May 2020 16:24:39,123 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:24:39,148 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:24:39,189 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:24:39,205 INFO : Cleaning up temp tables

11 May 2020 16:24:39,214 INFO : Completed import of Skyline document from CPDR-FFPE-ID-513_2020-01-28_13-31-54.sky.zip

11 May 2020 16:24:39,216 INFO : 100% Done

11 May 2020 16:24:39,228 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80244/CPDR-FFPE-ID-513_2020-01-28_13-31-54.sky.zip into the system

11 May 2020 16:24:39,229 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80261/CPDR-FFPE-ID-501_2020-01-28_13-35-36/CPDR-FFPE-ID-501.skyd into the system

11 May 2020 16:24:39,230 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80261/CPDR-FFPE-ID-501_2020-01-28_13-35-36/CPDR-FFPE-ID-501.skyd into the system

11 May 2020 16:24:39,230 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80261/CPDR-FFPE-ID-501_2020-01-28_13-35-36.sky.zip into the system

11 May 2020 16:24:39,234 INFO : Starting import from CPDR-FFPE-ID-501_2020-01-28_13-35-36.sky.zip

11 May 2020 16:24:39,240 INFO : Starting to import Skyline document from CPDR-FFPE-ID-501_2020-01-28_13-35-36.sky.zip

11 May 2020 16:24:39,248 INFO : Expanding CPDR-FFPE-ID-501.skyd

11 May 2020 16:24:39,438 INFO : Expanding CPDR-FFPE-ID-501.sky.view

11 May 2020 16:24:39,439 INFO : Expanding CPDR-FFPE-ID-501.sky

11 May 2020 16:24:39,448 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:24:39,451 INFO : 5% Done

11 May 2020 16:24:39,573 INFO : Inserting ANXA2

11 May 2020 16:24:39,581 INFO : 15% Done

11 May 2020 16:24:39,682 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:39,683 INFO : Inserting CAMKK2

11 May 2020 16:24:39,685 INFO : 22% Done

11 May 2020 16:24:39,786 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:39,786 INFO : Inserting CCND1

11 May 2020 16:24:39,788 INFO : 29% Done

11 May 2020 16:24:39,883 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:39,883 INFO : Inserting EGFR

11 May 2020 16:24:39,885 INFO : 32% Done

11 May 2020 16:24:39,940 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:39,940 INFO : 34% Done

11 May 2020 16:24:39,940 INFO : Inserting ERG_pan

11 May 2020 16:24:39,942 INFO : 39% Done

11 May 2020 16:24:40,012 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:40,012 INFO : Inserting FOLH1

11 May 2020 16:24:40,014 INFO : 41% Done

11 May 2020 16:24:40,055 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:40,055 INFO : Inserting MMP9

11 May 2020 16:24:40,057 INFO : 47% Done

11 May 2020 16:24:40,138 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:40,139 INFO : Inserting MUC1

11 May 2020 16:24:40,141 INFO : 50% Done

11 May 2020 16:24:40,193 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:40,193 INFO : Inserting NCOA2

11 May 2020 16:24:40,195 INFO : 56% Done

11 May 2020 16:24:40,275 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:40,275 INFO : Inserting PSA

11 May 2020 16:24:40,277 INFO : 62% Done

11 May 2020 16:24:40,359 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:40,359 INFO : Inserting SMAD4

11 May 2020 16:24:40,361 INFO : 68% Done

11 May 2020 16:24:40,431 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:40,431 INFO : Inserting SPINK1

11 May 2020 16:24:40,433 INFO : 75% Done

11 May 2020 16:24:40,526 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:40,526 INFO : Inserting SPRC

11 May 2020 16:24:40,529 INFO : 81% Done

11 May 2020 16:24:40,612 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:40,612 INFO : Inserting TFF3

11 May 2020 16:24:40,614 INFO : 88% Done

11 May 2020 16:24:40,696 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:40,697 INFO : Inserting TGFB1

11 May 2020 16:24:40,698 INFO : 91% Done

11 May 2020 16:24:40,742 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:40,742 INFO : Inserting VEGFA

11 May 2020 16:24:40,745 INFO : 98% Done

11 May 2020 16:24:40,845 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:40,845 INFO : Done parsing Skyline document.

11 May 2020 16:24:40,847 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:24:40,874 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:24:40,934 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:24:40,956 INFO : Cleaning up temp tables

11 May 2020 16:24:41,428 INFO : Completed import of Skyline document from CPDR-FFPE-ID-501_2020-01-28_13-35-36.sky.zip

11 May 2020 16:24:41,430 INFO : 100% Done

11 May 2020 16:24:41,442 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80261/CPDR-FFPE-ID-501_2020-01-28_13-35-36.sky.zip into the system

11 May 2020 16:24:41,442 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80190/CPDR-FFPE-ID-383_2020-01-28_11-16-12/CPDR-FFPE-ID-383.skyd into the system

11 May 2020 16:24:41,443 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80190/CPDR-FFPE-ID-383_2020-01-28_11-16-12/CPDR-FFPE-ID-383.skyd into the system

11 May 2020 16:24:41,443 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80190/CPDR-FFPE-ID-383_2020-01-28_11-16-12.sky.zip into the system

11 May 2020 16:24:41,448 INFO : Starting import from CPDR-FFPE-ID-383_2020-01-28_11-16-12.sky.zip

11 May 2020 16:24:41,454 INFO : Starting to import Skyline document from CPDR-FFPE-ID-383_2020-01-28_11-16-12.sky.zip

11 May 2020 16:24:41,465 INFO : Expanding CPDR-FFPE-ID-383.skyd

11 May 2020 16:24:41,735 INFO : Expanding CPDR-FFPE-ID-383.sky.view

11 May 2020 16:24:41,736 INFO : Expanding CPDR-FFPE-ID-383.sky

11 May 2020 16:24:41,745 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1

11 May 2020 16:24:41,748 INFO : 6% Done

11 May 2020 16:24:42,004 INFO : Inserting ANXA2

11 May 2020 16:24:42,011 INFO : 13% Done

11 May 2020 16:24:42,088 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:42,088 INFO : Inserting CAMKK2

11 May 2020 16:24:42,091 INFO : 19% Done

11 May 2020 16:24:42,171 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:42,172 INFO : Inserting CCND1

11 May 2020 16:24:42,175 INFO : 25% Done

11 May 2020 16:24:42,276 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:42,276 INFO : 26% Done

11 May 2020 16:24:42,276 INFO : Inserting EGFR

11 May 2020 16:24:42,279 INFO : 31% Done

11 May 2020 16:24:42,355 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:42,355 INFO : Inserting ERG_pan

11 May 2020 16:24:42,359 INFO : 42% Done

11 May 2020 16:24:42,567 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:42,567 INFO : Inserting FOLH1

11 May 2020 16:24:42,569 INFO : 46% Done

11 May 2020 16:24:42,638 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:42,638 INFO : Inserting MMP9

11 May 2020 16:24:42,641 INFO : 57% Done

11 May 2020 16:24:42,810 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:42,810 INFO : Inserting MUC1

11 May 2020 16:24:42,813 INFO : 62% Done

11 May 2020 16:24:42,883 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:42,883 INFO : Inserting NCOA2

11 May 2020 16:24:42,885 INFO : 67% Done

11 May 2020 16:24:42,943 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:42,943 INFO : Inserting PSA

11 May 2020 16:24:42,945 INFO : 71% Done

11 May 2020 16:24:43,014 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:43,014 INFO : Inserting SMAD4

11 May 2020 16:24:43,016 INFO : 75% Done

11 May 2020 16:24:43,076 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:43,076 INFO : Inserting SPINK1

11 May 2020 16:24:43,079 INFO : 80% Done

11 May 2020 16:24:43,155 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:43,155 INFO : Inserting SPRC

11 May 2020 16:24:43,157 INFO : 85% Done

11 May 2020 16:24:43,221 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:43,221 INFO : Inserting TFF3

11 May 2020 16:24:43,224 INFO : 91% Done

11 May 2020 16:24:43,313 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:43,313 INFO : Inserting TGFB1

11 May 2020 16:24:43,315 INFO : 93% Done

11 May 2020 16:24:43,347 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:43,347 INFO : Inserting VEGFA

11 May 2020 16:24:43,349 INFO : 98% Done

11 May 2020 16:24:43,425 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:43,426 INFO : Done parsing Skyline document.

11 May 2020 16:24:43,428 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:24:43,457 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:24:43,655 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:24:43,680 INFO : Cleaning up temp tables

11 May 2020 16:24:44,154 INFO : Completed import of Skyline document from CPDR-FFPE-ID-383_2020-01-28_11-16-12.sky.zip

11 May 2020 16:24:44,156 INFO : 100% Done

11 May 2020 16:24:44,169 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80190/CPDR-FFPE-ID-383_2020-01-28_11-16-12.sky.zip into the system

11 May 2020 16:24:44,169 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80194/CPDR-FFPE-ID-415_2020-01-28_11-17-17/CPDR-FFPE-ID-415.skyd into the system

11 May 2020 16:24:44,170 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80194/CPDR-FFPE-ID-415_2020-01-28_11-17-17/CPDR-FFPE-ID-415.skyd into the system

11 May 2020 16:24:44,171 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80194/CPDR-FFPE-ID-415_2020-01-28_11-17-17.sky.zip into the system

11 May 2020 16:24:44,175 INFO : Starting import from CPDR-FFPE-ID-415_2020-01-28_11-17-17.sky.zip

11 May 2020 16:24:44,181 INFO : Starting to import Skyline document from CPDR-FFPE-ID-415_2020-01-28_11-17-17.sky.zip

11 May 2020 16:24:44,192 INFO : Expanding CPDR-FFPE-ID-415.skyd

11 May 2020 16:24:44,468 INFO : Expanding CPDR-FFPE-ID-415.sky.view

11 May 2020 16:24:44,469 INFO : Expanding CPDR-FFPE-ID-415.sky

11 May 2020 16:24:44,478 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1

11 May 2020 16:24:44,481 INFO : 6% Done

11 May 2020 16:24:44,664 INFO : Inserting ANXA2

11 May 2020 16:24:44,672 INFO : 14% Done

11 May 2020 16:24:44,755 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:44,755 INFO : Inserting CAMKK2

11 May 2020 16:24:44,757 INFO : 20% Done

11 May 2020 16:24:44,836 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:44,837 INFO : Inserting CCND1

11 May 2020 16:24:44,839 INFO : 25% Done

11 May 2020 16:24:44,920 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:44,921 INFO : Inserting EGFR

11 May 2020 16:24:44,923 INFO : 31% Done

11 May 2020 16:24:45,014 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:45,014 INFO : Inserting ERG_pan

11 May 2020 16:24:45,018 INFO : 43% Done

11 May 2020 16:24:45,176 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:45,176 INFO : Inserting FOLH1

11 May 2020 16:24:45,179 INFO : 48% Done

11 May 2020 16:24:45,254 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:45,254 INFO : Inserting MMP9

11 May 2020 16:24:45,258 INFO : 61% Done

11 May 2020 16:24:45,429 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:45,429 INFO : Inserting MUC1

11 May 2020 16:24:45,432 INFO : 66% Done

11 May 2020 16:24:45,506 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:45,506 INFO : Inserting NCOA2

11 May 2020 16:24:45,508 INFO : 68% Done

11 May 2020 16:24:45,551 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:45,551 INFO : 69% Done

11 May 2020 16:24:45,551 INFO : Inserting PSA

11 May 2020 16:24:45,553 INFO : 73% Done

11 May 2020 16:24:45,624 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:45,624 INFO : 74% Done

11 May 2020 16:24:45,624 INFO : Inserting SMAD4

11 May 2020 16:24:45,627 INFO : 77% Done

11 May 2020 16:24:45,700 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:45,700 INFO : Inserting SPINK1

11 May 2020 16:24:45,703 INFO : 82% Done

11 May 2020 16:24:45,778 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:45,779 INFO : 83% Done

11 May 2020 16:24:45,779 INFO : Inserting SPRC

11 May 2020 16:24:45,781 INFO : 85% Done

11 May 2020 16:24:45,832 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:45,832 INFO : Inserting TFF3

11 May 2020 16:24:45,834 INFO : 91% Done

11 May 2020 16:24:45,915 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:45,916 INFO : Inserting TGFB1

11 May 2020 16:24:45,918 INFO : 93% Done

11 May 2020 16:24:45,953 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:45,953 INFO : Inserting VEGFA

11 May 2020 16:24:45,955 INFO : 98% Done

11 May 2020 16:24:46,035 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:46,035 INFO : Done parsing Skyline document.

11 May 2020 16:24:46,037 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:24:46,066 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:24:46,128 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:24:46,152 INFO : Cleaning up temp tables

11 May 2020 16:24:46,155 INFO : Completed import of Skyline document from CPDR-FFPE-ID-415_2020-01-28_11-17-17.sky.zip

11 May 2020 16:24:46,166 INFO : 100% Done

11 May 2020 16:24:46,178 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80194/CPDR-FFPE-ID-415_2020-01-28_11-17-17.sky.zip into the system

11 May 2020 16:24:46,178 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80197/CPDR-FFPE-ID-377_2020-01-28_11-17-56/CPDR-FFPE-ID-377.skyd into the system

11 May 2020 16:24:46,179 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80197/CPDR-FFPE-ID-377_2020-01-28_11-17-56/CPDR-FFPE-ID-377.skyd into the system

11 May 2020 16:24:46,180 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80197/CPDR-FFPE-ID-377_2020-01-28_11-17-56.sky.zip into the system

11 May 2020 16:24:46,184 INFO : Starting import from CPDR-FFPE-ID-377_2020-01-28_11-17-56.sky.zip

11 May 2020 16:24:46,190 INFO : Starting to import Skyline document from CPDR-FFPE-ID-377_2020-01-28_11-17-56.sky.zip

11 May 2020 16:24:46,202 INFO : Expanding CPDR-FFPE-ID-377.skyd

11 May 2020 16:24:46,471 INFO : Expanding CPDR-FFPE-ID-377.sky.view

11 May 2020 16:24:46,472 INFO : Expanding CPDR-FFPE-ID-377.sky

11 May 2020 16:24:46,480 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1

11 May 2020 16:24:46,483 INFO : 6% Done

11 May 2020 16:24:46,697 INFO : Inserting ANXA2

11 May 2020 16:24:46,704 INFO : 15% Done

11 May 2020 16:24:46,790 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:46,791 INFO : Inserting CAMKK2

11 May 2020 16:24:46,793 INFO : 22% Done

11 May 2020 16:24:46,879 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:46,880 INFO : Inserting CCND1

11 May 2020 16:24:46,881 INFO : 26% Done

11 May 2020 16:24:46,954 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:46,954 INFO : Inserting EGFR

11 May 2020 16:24:46,956 INFO : 32% Done

11 May 2020 16:24:47,033 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:47,033 INFO : Inserting ERG_pan

11 May 2020 16:24:47,037 INFO : 44% Done

11 May 2020 16:24:47,207 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:47,207 INFO : Inserting FOLH1

11 May 2020 16:24:47,209 INFO : 48% Done

11 May 2020 16:24:47,278 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:47,278 INFO : Inserting MMP9

11 May 2020 16:24:47,282 INFO : 61% Done

11 May 2020 16:24:47,464 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:47,465 INFO : Inserting MUC1

11 May 2020 16:24:47,467 INFO : 65% Done

11 May 2020 16:24:47,528 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:47,528 INFO : Inserting NCOA2

11 May 2020 16:24:47,530 INFO : 67% Done

11 May 2020 16:24:47,570 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:47,570 INFO : Inserting PSA

11 May 2020 16:24:47,572 INFO : 73% Done

11 May 2020 16:24:47,652 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:47,652 INFO : Inserting SMAD4

11 May 2020 16:24:47,654 INFO : 78% Done

11 May 2020 16:24:47,738 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:47,738 INFO : Inserting SPINK1

11 May 2020 16:24:47,740 INFO : 81% Done

11 May 2020 16:24:47,807 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:47,807 INFO : Inserting SPRC

11 May 2020 16:24:47,809 INFO : 85% Done

11 May 2020 16:24:47,851 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:47,852 INFO : Inserting TFF3

11 May 2020 16:24:47,854 INFO : 90% Done

11 May 2020 16:24:47,935 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:47,935 INFO : 91% Done

11 May 2020 16:24:47,935 INFO : Inserting TGFB1

11 May 2020 16:24:47,937 INFO : 92% Done

11 May 2020 16:24:47,970 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:47,970 INFO : 93% Done

11 May 2020 16:24:47,971 INFO : Inserting VEGFA

11 May 2020 16:24:47,973 INFO : 98% Done

11 May 2020 16:24:48,061 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:48,061 INFO : Done parsing Skyline document.

11 May 2020 16:24:48,063 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:24:48,092 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:24:48,153 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:24:48,177 INFO : Cleaning up temp tables

11 May 2020 16:24:48,180 INFO : Completed import of Skyline document from CPDR-FFPE-ID-377_2020-01-28_11-17-56.sky.zip

11 May 2020 16:24:48,188 INFO : 100% Done

11 May 2020 16:24:48,200 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80197/CPDR-FFPE-ID-377_2020-01-28_11-17-56.sky.zip into the system

11 May 2020 16:24:48,200 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80224/CPDR-FFPE-ID-502_2020-01-28_13-25-12/CPDR-FFPE-ID-502.skyd into the system

11 May 2020 16:24:48,201 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80224/CPDR-FFPE-ID-502_2020-01-28_13-25-12/CPDR-FFPE-ID-502.skyd into the system

11 May 2020 16:24:48,201 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80224/CPDR-FFPE-ID-502_2020-01-28_13-25-12.sky.zip into the system

11 May 2020 16:24:48,205 INFO : Starting import from CPDR-FFPE-ID-502_2020-01-28_13-25-12.sky.zip

11 May 2020 16:24:48,211 INFO : Starting to import Skyline document from CPDR-FFPE-ID-502_2020-01-28_13-25-12.sky.zip

11 May 2020 16:24:48,220 INFO : Expanding CPDR-FFPE-ID-502.skyd

11 May 2020 16:24:48,472 INFO : Expanding CPDR-FFPE-ID-502.sky.view

11 May 2020 16:24:48,472 INFO : Expanding CPDR-FFPE-ID-502.sky

11 May 2020 16:24:48,480 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:24:48,483 INFO : 6% Done

11 May 2020 16:24:48,642 INFO : Inserting ANXA2

11 May 2020 16:24:48,648 INFO : 13% Done

11 May 2020 16:24:48,725 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:48,725 INFO : Inserting CAMKK2

11 May 2020 16:24:48,727 INFO : 19% Done

11 May 2020 16:24:48,804 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:48,804 INFO : Inserting CCND1

11 May 2020 16:24:48,806 INFO : 26% Done

11 May 2020 16:24:48,913 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:48,913 INFO : Inserting EGFR

11 May 2020 16:24:48,915 INFO : 31% Done

11 May 2020 16:24:48,980 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:48,980 INFO : Inserting ERG_pan

11 May 2020 16:24:48,983 INFO : 39% Done

11 May 2020 16:24:49,089 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:49,089 INFO : Inserting FOLH1

11 May 2020 16:24:49,091 INFO : 44% Done

11 May 2020 16:24:49,158 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:49,159 INFO : Inserting MMP9

11 May 2020 16:24:49,161 INFO : 52% Done

11 May 2020 16:24:49,276 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:49,276 INFO : Inserting MUC1

11 May 2020 16:24:49,279 INFO : 57% Done

11 May 2020 16:24:49,348 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:49,348 INFO : Inserting NCOA2

11 May 2020 16:24:49,350 INFO : 62% Done

11 May 2020 16:24:49,414 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:49,414 INFO : Inserting PSA

11 May 2020 16:24:49,417 INFO : 69% Done

11 May 2020 16:24:49,505 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:49,505 INFO : Inserting SMAD4

11 May 2020 16:24:49,507 INFO : 72% Done

11 May 2020 16:24:49,578 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:49,578 INFO : 74% Done

11 May 2020 16:24:49,578 INFO : Inserting SPINK1

11 May 2020 16:24:49,581 INFO : 79% Done

11 May 2020 16:24:49,681 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:49,681 INFO : Inserting SPRC

11 May 2020 16:24:49,684 INFO : 84% Done

11 May 2020 16:24:49,775 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:49,775 INFO : Inserting TFF3

11 May 2020 16:24:49,778 INFO : 90% Done

11 May 2020 16:24:49,867 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:49,868 INFO : Inserting TGFB1

11 May 2020 16:24:49,869 INFO : 93% Done

11 May 2020 16:24:49,913 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:49,914 INFO : Inserting VEGFA

11 May 2020 16:24:49,917 INFO : 98% Done

11 May 2020 16:24:50,009 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:50,009 INFO : Done parsing Skyline document.

11 May 2020 16:24:50,012 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:24:50,042 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:24:50,107 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:24:50,131 INFO : Cleaning up temp tables

11 May 2020 16:24:50,135 INFO : Completed import of Skyline document from CPDR-FFPE-ID-502_2020-01-28_13-25-12.sky.zip

11 May 2020 16:24:50,143 INFO : 100% Done

11 May 2020 16:24:50,154 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80224/CPDR-FFPE-ID-502_2020-01-28_13-25-12.sky.zip into the system

11 May 2020 16:24:50,154 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80230/CPDR-FFPE-ID-453_2020-01-28_13-26-47/CPDR-FFPE-ID-453.skyd into the system

11 May 2020 16:24:50,156 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80230/CPDR-FFPE-ID-453_2020-01-28_13-26-47/CPDR-FFPE-ID-453.skyd into the system

11 May 2020 16:24:50,156 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80230/CPDR-FFPE-ID-453_2020-01-28_13-26-47.sky.zip into the system

11 May 2020 16:24:50,160 INFO : Starting import from CPDR-FFPE-ID-453_2020-01-28_13-26-47.sky.zip

11 May 2020 16:24:50,166 INFO : Starting to import Skyline document from CPDR-FFPE-ID-453_2020-01-28_13-26-47.sky.zip

11 May 2020 16:24:50,174 INFO : Expanding CPDR-FFPE-ID-453.skyd

11 May 2020 16:24:50,353 INFO : Expanding CPDR-FFPE-ID-453.sky.view

11 May 2020 16:24:50,354 INFO : Expanding CPDR-FFPE-ID-453.sky

11 May 2020 16:24:50,362 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:24:50,365 INFO : 6% Done

11 May 2020 16:24:50,501 INFO : Inserting ANXA2

11 May 2020 16:24:50,508 INFO : 13% Done

11 May 2020 16:24:50,577 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:50,577 INFO : Inserting CAMKK2

11 May 2020 16:24:50,579 INFO : 18% Done

11 May 2020 16:24:50,644 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:50,644 INFO : Inserting CCND1

11 May 2020 16:24:50,647 INFO : 26% Done

11 May 2020 16:24:50,747 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:50,747 INFO : Inserting EGFR

11 May 2020 16:24:50,749 INFO : 30% Done

11 May 2020 16:24:50,799 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:50,799 INFO : Inserting ERG_pan

11 May 2020 16:24:50,801 INFO : 38% Done

11 May 2020 16:24:50,893 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:50,894 INFO : Inserting FOLH1

11 May 2020 16:24:50,896 INFO : 42% Done

11 May 2020 16:24:50,948 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:50,948 INFO : Inserting MMP9

11 May 2020 16:24:50,951 INFO : 50% Done

11 May 2020 16:24:51,042 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:51,042 INFO : Inserting MUC1

11 May 2020 16:24:51,044 INFO : 54% Done

11 May 2020 16:24:51,096 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:51,096 INFO : Inserting NCOA2

11 May 2020 16:24:51,098 INFO : 59% Done

11 May 2020 16:24:51,156 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:51,157 INFO : 60% Done

11 May 2020 16:24:51,157 INFO : Inserting PSA

11 May 2020 16:24:51,159 INFO : 66% Done

11 May 2020 16:24:51,241 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:51,241 INFO : Inserting SMAD4

11 May 2020 16:24:51,243 INFO : 71% Done

11 May 2020 16:24:51,297 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:51,297 INFO : Inserting SPINK1

11 May 2020 16:24:51,299 INFO : 77% Done

11 May 2020 16:24:51,382 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:51,383 INFO : Inserting SPRC

11 May 2020 16:24:51,385 INFO : 82% Done

11 May 2020 16:24:51,448 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:51,449 INFO : Inserting TFF3

11 May 2020 16:24:51,451 INFO : 91% Done

11 May 2020 16:24:51,539 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:51,539 INFO : Inserting TGFB1

11 May 2020 16:24:51,541 INFO : 94% Done

11 May 2020 16:24:51,575 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:51,575 INFO : Inserting VEGFA

11 May 2020 16:24:51,577 INFO : 98% Done

11 May 2020 16:24:51,641 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:51,641 INFO : Done parsing Skyline document.

11 May 2020 16:24:51,643 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:24:51,671 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:24:51,721 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:24:51,738 INFO : Cleaning up temp tables

11 May 2020 16:24:51,742 INFO : Completed import of Skyline document from CPDR-FFPE-ID-453_2020-01-28_13-26-47.sky.zip

11 May 2020 16:24:51,750 INFO : 100% Done

11 May 2020 16:24:51,777 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80230/CPDR-FFPE-ID-453_2020-01-28_13-26-47.sky.zip into the system

11 May 2020 16:24:51,777 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80236/CPDR-FFPE-ID-450_2020-01-28_13-30-19/CPDR-FFPE-ID-450.skyd into the system

11 May 2020 16:24:51,778 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80236/CPDR-FFPE-ID-450_2020-01-28_13-30-19/CPDR-FFPE-ID-450.skyd into the system

11 May 2020 16:24:51,778 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80236/CPDR-FFPE-ID-450_2020-01-28_13-30-19.sky.zip into the system

11 May 2020 16:24:51,782 INFO : Starting import from CPDR-FFPE-ID-450_2020-01-28_13-30-19.sky.zip

11 May 2020 16:24:51,789 INFO : Starting to import Skyline document from CPDR-FFPE-ID-450_2020-01-28_13-30-19.sky.zip

11 May 2020 16:24:51,797 INFO : Expanding CPDR-FFPE-ID-450.skyd

11 May 2020 16:24:51,996 INFO : Expanding CPDR-FFPE-ID-450.sky.view

11 May 2020 16:24:51,997 INFO : Expanding CPDR-FFPE-ID-450.sky

11 May 2020 16:24:52,004 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:24:52,007 INFO : 6% Done

11 May 2020 16:24:52,157 INFO : Inserting ANXA2

11 May 2020 16:24:52,165 INFO : 13% Done

11 May 2020 16:24:52,230 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:52,231 INFO : Inserting CAMKK2

11 May 2020 16:24:52,233 INFO : 18% Done

11 May 2020 16:24:52,298 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:52,298 INFO : Inserting CCND1

11 May 2020 16:24:52,301 INFO : 25% Done

11 May 2020 16:24:52,447 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:52,448 INFO : 26% Done

11 May 2020 16:24:52,448 INFO : Inserting EGFR

11 May 2020 16:24:52,450 INFO : 30% Done

11 May 2020 16:24:52,528 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:52,528 INFO : Inserting ERG_pan

11 May 2020 16:24:52,531 INFO : 38% Done

11 May 2020 16:24:52,637 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:52,637 INFO : Inserting FOLH1

11 May 2020 16:24:52,640 INFO : 44% Done

11 May 2020 16:24:52,708 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:52,708 INFO : Inserting MMP9

11 May 2020 16:24:52,711 INFO : 52% Done

11 May 2020 16:24:52,824 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:52,824 INFO : Inserting MUC1

11 May 2020 16:24:52,827 INFO : 58% Done

11 May 2020 16:24:52,892 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:52,892 INFO : Inserting NCOA2

11 May 2020 16:24:52,895 INFO : 62% Done

11 May 2020 16:24:52,963 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:52,963 INFO : Inserting PSA

11 May 2020 16:24:52,966 INFO : 69% Done

11 May 2020 16:24:53,055 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:53,056 INFO : Inserting SMAD4

11 May 2020 16:24:53,058 INFO : 73% Done

11 May 2020 16:24:53,108 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:53,108 INFO : Inserting SPINK1

11 May 2020 16:24:53,111 INFO : 79% Done

11 May 2020 16:24:53,200 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:53,200 INFO : Inserting SPRC

11 May 2020 16:24:53,203 INFO : 85% Done

11 May 2020 16:24:53,269 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:53,269 INFO : Inserting TFF3

11 May 2020 16:24:53,271 INFO : 92% Done

11 May 2020 16:24:53,356 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:53,356 INFO : Inserting TGFB1

11 May 2020 16:24:53,358 INFO : 93% Done

11 May 2020 16:24:53,393 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:53,393 INFO : 94% Done

11 May 2020 16:24:53,393 INFO : Inserting VEGFA

11 May 2020 16:24:53,395 INFO : 98% Done

11 May 2020 16:24:53,460 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:53,460 INFO : Done parsing Skyline document.

11 May 2020 16:24:53,462 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:24:53,489 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:24:53,552 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:24:53,572 INFO : Cleaning up temp tables

11 May 2020 16:24:54,068 INFO : Completed import of Skyline document from CPDR-FFPE-ID-450_2020-01-28_13-30-19.sky.zip

11 May 2020 16:24:54,070 INFO : 100% Done

11 May 2020 16:24:54,082 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80236/CPDR-FFPE-ID-450_2020-01-28_13-30-19.sky.zip into the system

11 May 2020 16:24:54,082 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80246/CPDR-FFPE-ID-431_2020-01-28_13-32-18/CPDR-FFPE-ID-431.skyd into the system

11 May 2020 16:24:54,083 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80246/CPDR-FFPE-ID-431_2020-01-28_13-32-18/CPDR-FFPE-ID-431.skyd into the system

11 May 2020 16:24:54,083 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80246/CPDR-FFPE-ID-431_2020-01-28_13-32-18.sky.zip into the system

11 May 2020 16:24:54,087 INFO : Starting import from CPDR-FFPE-ID-431_2020-01-28_13-32-18.sky.zip

11 May 2020 16:24:54,093 INFO : Starting to import Skyline document from CPDR-FFPE-ID-431_2020-01-28_13-32-18.sky.zip

11 May 2020 16:24:54,099 INFO : Expanding CPDR-FFPE-ID-431.skyd

11 May 2020 16:24:54,227 INFO : Expanding CPDR-FFPE-ID-431.sky.view

11 May 2020 16:24:54,228 INFO : Expanding CPDR-FFPE-ID-431.sky

11 May 2020 16:24:54,235 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:24:54,238 INFO : 6% Done

11 May 2020 16:24:54,344 INFO : Inserting ANXA2

11 May 2020 16:24:54,351 INFO : 13% Done

11 May 2020 16:24:54,407 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:54,407 INFO : Inserting CAMKK2

11 May 2020 16:24:54,409 INFO : 19% Done

11 May 2020 16:24:54,463 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:54,463 INFO : Inserting CCND1

11 May 2020 16:24:54,466 INFO : 25% Done

11 May 2020 16:24:54,544 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:54,544 INFO : Inserting EGFR

11 May 2020 16:24:54,546 INFO : 31% Done

11 May 2020 16:24:54,588 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:54,588 INFO : Inserting ERG_pan

11 May 2020 16:24:54,591 INFO : 37% Done

11 May 2020 16:24:54,657 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:54,657 INFO : 38% Done

11 May 2020 16:24:54,657 INFO : Inserting FOLH1

11 May 2020 16:24:54,659 INFO : 42% Done

11 May 2020 16:24:54,701 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:54,701 INFO : Inserting MMP9

11 May 2020 16:24:54,703 INFO : 50% Done

11 May 2020 16:24:54,771 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:54,771 INFO : Inserting MUC1

11 May 2020 16:24:54,773 INFO : 53% Done

11 May 2020 16:24:54,817 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:54,817 INFO : Inserting NCOA2

11 May 2020 16:24:54,819 INFO : 59% Done

11 May 2020 16:24:54,864 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:54,864 INFO : Inserting PSA

11 May 2020 16:24:54,866 INFO : 67% Done

11 May 2020 16:24:54,935 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:54,935 INFO : Inserting SMAD4

11 May 2020 16:24:54,936 INFO : 70% Done

11 May 2020 16:24:54,993 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:54,994 INFO : Inserting SPINK1

11 May 2020 16:24:54,996 INFO : 77% Done

11 May 2020 16:24:55,066 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:55,067 INFO : Inserting SPRC

11 May 2020 16:24:55,068 INFO : 82% Done

11 May 2020 16:24:55,115 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:55,115 INFO : Inserting TFF3

11 May 2020 16:24:55,117 INFO : 90% Done

11 May 2020 16:24:55,186 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:55,186 INFO : Inserting TGFB1

11 May 2020 16:24:55,188 INFO : 94% Done

11 May 2020 16:24:55,221 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:55,221 INFO : Inserting VEGFA

11 May 2020 16:24:55,223 INFO : 98% Done

11 May 2020 16:24:55,275 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:55,275 INFO : Done parsing Skyline document.

11 May 2020 16:24:55,277 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:24:55,303 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:24:55,344 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:24:55,360 INFO : Cleaning up temp tables

11 May 2020 16:24:55,364 INFO : Completed import of Skyline document from CPDR-FFPE-ID-431_2020-01-28_13-32-18.sky.zip

11 May 2020 16:24:55,373 INFO : 100% Done

11 May 2020 16:24:55,385 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80246/CPDR-FFPE-ID-431_2020-01-28_13-32-18.sky.zip into the system

11 May 2020 16:24:55,385 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80256/CPDR-FFPE-ID-507_2020-01-28_13-34-25/CPDR-FFPE-ID-507.skyd into the system

11 May 2020 16:24:55,386 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80256/CPDR-FFPE-ID-507_2020-01-28_13-34-25/CPDR-FFPE-ID-507.skyd into the system

11 May 2020 16:24:55,387 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80256/CPDR-FFPE-ID-507_2020-01-28_13-34-25.sky.zip into the system

11 May 2020 16:24:55,391 INFO : Starting import from CPDR-FFPE-ID-507_2020-01-28_13-34-25.sky.zip

11 May 2020 16:24:55,397 INFO : Starting to import Skyline document from CPDR-FFPE-ID-507_2020-01-28_13-34-25.sky.zip

11 May 2020 16:24:55,406 INFO : Expanding CPDR-FFPE-ID-507.skyd

11 May 2020 16:24:55,673 INFO : Expanding CPDR-FFPE-ID-507.sky.view

11 May 2020 16:24:55,674 INFO : Expanding CPDR-FFPE-ID-507.sky

11 May 2020 16:24:55,683 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:24:55,687 INFO : 6% Done

11 May 2020 16:24:55,854 INFO : Inserting ANXA2

11 May 2020 16:24:55,862 INFO : 15% Done

11 May 2020 16:24:56,147 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:56,148 INFO : Inserting CAMKK2

11 May 2020 16:24:56,151 INFO : 22% Done

11 May 2020 16:24:56,284 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:56,285 INFO : Inserting CCND1

11 May 2020 16:24:56,288 INFO : 30% Done

11 May 2020 16:24:56,431 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:56,431 INFO : Inserting EGFR

11 May 2020 16:24:56,434 INFO : 34% Done

11 May 2020 16:24:56,514 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:56,514 INFO : Inserting ERG_pan

11 May 2020 16:24:56,517 INFO : 39% Done

11 May 2020 16:24:56,606 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:56,606 INFO : Inserting FOLH1

11 May 2020 16:24:56,608 INFO : 42% Done

11 May 2020 16:24:56,659 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:56,659 INFO : Inserting MMP9

11 May 2020 16:24:56,661 INFO : 47% Done

11 May 2020 16:24:56,755 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:56,755 INFO : 48% Done

11 May 2020 16:24:56,755 INFO : Inserting MUC1

11 May 2020 16:24:56,758 INFO : 52% Done

11 May 2020 16:24:56,823 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:56,824 INFO : Inserting NCOA2

11 May 2020 16:24:56,827 INFO : 59% Done

11 May 2020 16:24:56,930 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:56,931 INFO : Inserting PSA

11 May 2020 16:24:56,933 INFO : 65% Done

11 May 2020 16:24:57,037 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:57,037 INFO : Inserting SMAD4

11 May 2020 16:24:57,040 INFO : 71% Done

11 May 2020 16:24:57,183 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:57,183 INFO : Inserting SPINK1

11 May 2020 16:24:57,186 INFO : 77% Done

11 May 2020 16:24:57,314 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:57,314 INFO : Inserting SPRC

11 May 2020 16:24:57,317 INFO : 84% Done

11 May 2020 16:24:57,436 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:57,436 INFO : Inserting TFF3

11 May 2020 16:24:57,439 INFO : 90% Done

11 May 2020 16:24:57,552 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:57,552 INFO : Inserting TGFB1

11 May 2020 16:24:57,554 INFO : 93% Done

11 May 2020 16:24:57,607 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:57,608 INFO : Inserting VEGFA

11 May 2020 16:24:57,610 INFO : 98% Done

11 May 2020 16:24:57,709 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:57,709 INFO : Done parsing Skyline document.

11 May 2020 16:24:57,711 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:24:57,743 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:24:57,868 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:24:57,898 INFO : Cleaning up temp tables

11 May 2020 16:24:57,908 INFO : Completed import of Skyline document from CPDR-FFPE-ID-507_2020-01-28_13-34-25.sky.zip

11 May 2020 16:24:57,909 INFO : 100% Done

11 May 2020 16:24:57,921 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80256/CPDR-FFPE-ID-507_2020-01-28_13-34-25.sky.zip into the system

11 May 2020 16:24:57,921 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80257/CPDR-FFPE-ID-528_2020-01-28_13-34-46/CPDR-FFPE-ID-528.skyd into the system

11 May 2020 16:24:57,924 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80257/CPDR-FFPE-ID-528_2020-01-28_13-34-46/CPDR-FFPE-ID-528.skyd into the system

11 May 2020 16:24:57,924 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80257/CPDR-FFPE-ID-528_2020-01-28_13-34-46.sky.zip into the system

11 May 2020 16:24:57,929 INFO : Starting import from CPDR-FFPE-ID-528_2020-01-28_13-34-46.sky.zip

11 May 2020 16:24:57,935 INFO : Starting to import Skyline document from CPDR-FFPE-ID-528_2020-01-28_13-34-46.sky.zip

11 May 2020 16:24:57,943 INFO : Expanding CPDR-FFPE-ID-528.skyd

11 May 2020 16:24:58,203 INFO : Expanding CPDR-FFPE-ID-528.sky.view

11 May 2020 16:24:58,204 INFO : Expanding CPDR-FFPE-ID-528.sky

11 May 2020 16:24:58,213 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:24:58,217 INFO : 6% Done

11 May 2020 16:24:58,361 INFO : Inserting ANXA2

11 May 2020 16:24:58,370 INFO : 15% Done

11 May 2020 16:24:58,483 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:58,483 INFO : Inserting CAMKK2

11 May 2020 16:24:58,486 INFO : 22% Done

11 May 2020 16:24:58,688 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:58,882 INFO : Inserting CCND1

11 May 2020 16:24:58,885 INFO : 29% Done

11 May 2020 16:24:59,014 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:59,014 INFO : Inserting EGFR

11 May 2020 16:24:59,016 INFO : 34% Done

11 May 2020 16:24:59,076 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:59,076 INFO : Inserting ERG_pan

11 May 2020 16:24:59,078 INFO : 39% Done

11 May 2020 16:24:59,157 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:59,157 INFO : Inserting FOLH1

11 May 2020 16:24:59,159 INFO : 42% Done

11 May 2020 16:24:59,198 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:59,198 INFO : Inserting MMP9

11 May 2020 16:24:59,201 INFO : 46% Done

11 May 2020 16:24:59,262 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:59,262 INFO : Inserting MUC1

11 May 2020 16:24:59,264 INFO : 50% Done

11 May 2020 16:24:59,316 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:59,316 INFO : Inserting NCOA2

11 May 2020 16:24:59,319 INFO : 57% Done

11 May 2020 16:24:59,407 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:59,407 INFO : Inserting PSA

11 May 2020 16:24:59,409 INFO : 64% Done

11 May 2020 16:24:59,503 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:59,503 INFO : Inserting SMAD4

11 May 2020 16:24:59,505 INFO : 68% Done

11 May 2020 16:24:59,578 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:59,578 INFO : Inserting SPINK1

11 May 2020 16:24:59,581 INFO : 74% Done

11 May 2020 16:24:59,670 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:59,670 INFO : Inserting SPRC

11 May 2020 16:24:59,672 INFO : 81% Done

11 May 2020 16:24:59,769 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:59,770 INFO : Inserting TFF3

11 May 2020 16:24:59,772 INFO : 88% Done

11 May 2020 16:24:59,866 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:59,866 INFO : Inserting TGFB1

11 May 2020 16:24:59,868 INFO : 92% Done

11 May 2020 16:24:59,919 DEBUG: Total peptides inserted: 1

11 May 2020 16:24:59,919 INFO : Inserting VEGFA

11 May 2020 16:24:59,921 INFO : 98% Done

11 May 2020 16:25:00,014 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:00,014 INFO : Done parsing Skyline document.

11 May 2020 16:25:00,016 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:25:00,045 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:25:00,140 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:25:00,165 INFO : Cleaning up temp tables

11 May 2020 16:25:00,659 INFO : Completed import of Skyline document from CPDR-FFPE-ID-528_2020-01-28_13-34-46.sky.zip

11 May 2020 16:25:00,661 INFO : 100% Done

11 May 2020 16:25:00,672 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80257/CPDR-FFPE-ID-528_2020-01-28_13-34-46.sky.zip into the system

11 May 2020 16:25:00,673 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80259/CPDR-FFPE-ID-521_2020-01-28_13-35-12/CPDR-FFPE-ID-521.skyd into the system

11 May 2020 16:25:00,674 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80259/CPDR-FFPE-ID-521_2020-01-28_13-35-12/CPDR-FFPE-ID-521.skyd into the system

11 May 2020 16:25:00,674 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80259/CPDR-FFPE-ID-521_2020-01-28_13-35-12.sky.zip into the system

11 May 2020 16:25:00,678 INFO : Starting import from CPDR-FFPE-ID-521_2020-01-28_13-35-12.sky.zip

11 May 2020 16:25:00,686 INFO : Starting to import Skyline document from CPDR-FFPE-ID-521_2020-01-28_13-35-12.sky.zip

11 May 2020 16:25:00,695 INFO : Expanding CPDR-FFPE-ID-521.skyd

11 May 2020 16:25:00,941 INFO : Expanding CPDR-FFPE-ID-521.sky.view

11 May 2020 16:25:00,942 INFO : Expanding CPDR-FFPE-ID-521.sky

11 May 2020 16:25:00,951 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:25:00,954 INFO : 6% Done

11 May 2020 16:25:01,111 INFO : Inserting ANXA2

11 May 2020 16:25:01,121 INFO : 15% Done

11 May 2020 16:25:01,265 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:01,265 INFO : Inserting CAMKK2

11 May 2020 16:25:01,270 INFO : 23% Done

11 May 2020 16:25:01,392 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:01,392 INFO : Inserting CCND1

11 May 2020 16:25:01,396 INFO : 30% Done

11 May 2020 16:25:01,498 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:01,498 INFO : Inserting EGFR

11 May 2020 16:25:01,501 INFO : 34% Done

11 May 2020 16:25:01,542 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:01,542 INFO : Inserting ERG_pan

11 May 2020 16:25:01,544 INFO : 41% Done

11 May 2020 16:25:01,580 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:01,581 INFO : Inserting FOLH1

11 May 2020 16:25:01,582 INFO : 43% Done

11 May 2020 16:25:01,604 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:01,604 INFO : 44% Done

11 May 2020 16:25:01,604 INFO : Inserting MMP9

11 May 2020 16:25:01,606 INFO : 51% Done

11 May 2020 16:25:01,657 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:01,657 INFO : Inserting MUC1

11 May 2020 16:25:01,658 INFO : 54% Done

11 May 2020 16:25:01,688 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:01,688 INFO : Inserting NCOA2

11 May 2020 16:25:01,690 INFO : 61% Done

11 May 2020 16:25:01,732 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:01,732 INFO : Inserting PSA

11 May 2020 16:25:01,733 INFO : 66% Done

11 May 2020 16:25:01,780 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:01,780 INFO : Inserting SMAD4

11 May 2020 16:25:01,782 INFO : 72% Done

11 May 2020 16:25:01,825 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:01,825 INFO : Inserting SPINK1

11 May 2020 16:25:01,827 INFO : 77% Done

11 May 2020 16:25:01,877 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:01,877 INFO : Inserting SPRC

11 May 2020 16:25:01,879 INFO : 84% Done

11 May 2020 16:25:01,925 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:01,925 INFO : Inserting TFF3

11 May 2020 16:25:01,927 INFO : 89% Done

11 May 2020 16:25:01,967 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:01,967 INFO : Inserting TGFB1

11 May 2020 16:25:01,968 INFO : 93% Done

11 May 2020 16:25:01,986 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:01,986 INFO : Inserting VEGFA

11 May 2020 16:25:01,987 INFO : 98% Done

11 May 2020 16:25:02,092 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:02,092 INFO : Done parsing Skyline document.

11 May 2020 16:25:02,094 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:25:02,123 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:25:02,202 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:25:02,229 INFO : Cleaning up temp tables

11 May 2020 16:25:02,731 INFO : Completed import of Skyline document from CPDR-FFPE-ID-521_2020-01-28_13-35-12.sky.zip

11 May 2020 16:25:02,733 INFO : 100% Done

11 May 2020 16:25:02,745 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80259/CPDR-FFPE-ID-521_2020-01-28_13-35-12.sky.zip into the system

11 May 2020 16:25:02,746 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80268/CPDR-FFPE-ID-687_2020-01-28_13-36-59/CPDR-FFPE-ID-687.skyd into the system

11 May 2020 16:25:02,747 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80268/CPDR-FFPE-ID-687_2020-01-28_13-36-59/CPDR-FFPE-ID-687.skyd into the system

11 May 2020 16:25:02,747 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80268/CPDR-FFPE-ID-687_2020-01-28_13-36-59.sky.zip into the system

11 May 2020 16:25:02,751 INFO : Starting import from CPDR-FFPE-ID-687_2020-01-28_13-36-59.sky.zip

11 May 2020 16:25:02,757 INFO : Starting to import Skyline document from CPDR-FFPE-ID-687_2020-01-28_13-36-59.sky.zip

11 May 2020 16:25:02,768 INFO : Expanding CPDR-FFPE-ID-687.skyd

11 May 2020 16:25:02,987 INFO : Expanding CPDR-FFPE-ID-687.sky.view

11 May 2020 16:25:02,988 INFO : Expanding CPDR-FFPE-ID-687.sky

11 May 2020 16:25:02,996 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:25:02,999 INFO : 5% Done

11 May 2020 16:25:03,186 INFO : Inserting ANXA2

11 May 2020 16:25:03,194 INFO : 15% Done

11 May 2020 16:25:03,316 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:03,316 INFO : Inserting CAMKK2

11 May 2020 16:25:03,319 INFO : 23% Done

11 May 2020 16:25:03,431 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:03,432 INFO : Inserting CCND1

11 May 2020 16:25:03,435 INFO : 29% Done

11 May 2020 16:25:03,548 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:03,548 INFO : Inserting EGFR

11 May 2020 16:25:03,551 INFO : 34% Done

11 May 2020 16:25:03,622 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:03,622 INFO : Inserting ERG_pan

11 May 2020 16:25:03,626 INFO : 40% Done

11 May 2020 16:25:03,717 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:03,717 INFO : Inserting FOLH1

11 May 2020 16:25:03,720 INFO : 43% Done

11 May 2020 16:25:03,761 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:03,761 INFO : Inserting MMP9

11 May 2020 16:25:03,764 INFO : 49% Done

11 May 2020 16:25:03,844 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:03,844 INFO : Inserting MUC1

11 May 2020 16:25:03,846 INFO : 52% Done

11 May 2020 16:25:03,903 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:03,903 INFO : Inserting NCOA2

11 May 2020 16:25:03,906 INFO : 58% Done

11 May 2020 16:25:03,994 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:03,994 INFO : Inserting PSA

11 May 2020 16:25:03,997 INFO : 64% Done

11 May 2020 16:25:04,090 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:04,090 INFO : Inserting SMAD4

11 May 2020 16:25:04,093 INFO : 70% Done

11 May 2020 16:25:04,181 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:04,182 INFO : Inserting SPINK1

11 May 2020 16:25:04,184 INFO : 76% Done

11 May 2020 16:25:04,278 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:04,278 INFO : Inserting SPRC

11 May 2020 16:25:04,281 INFO : 82% Done

11 May 2020 16:25:04,370 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:04,370 INFO : Inserting TFF3

11 May 2020 16:25:04,373 INFO : 88% Done

11 May 2020 16:25:04,462 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:04,462 INFO : Inserting TGFB1

11 May 2020 16:25:04,464 INFO : 91% Done

11 May 2020 16:25:04,509 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:04,509 INFO : Inserting VEGFA

11 May 2020 16:25:04,512 INFO : 98% Done

11 May 2020 16:25:04,622 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:04,622 INFO : Done parsing Skyline document.

11 May 2020 16:25:04,625 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:25:04,655 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:25:04,720 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:25:04,749 INFO : Cleaning up temp tables

11 May 2020 16:25:05,207 INFO : Completed import of Skyline document from CPDR-FFPE-ID-687_2020-01-28_13-36-59.sky.zip

11 May 2020 16:25:05,209 INFO : 100% Done

11 May 2020 16:25:05,222 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80268/CPDR-FFPE-ID-687_2020-01-28_13-36-59.sky.zip into the system

11 May 2020 16:25:05,222 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80202/CPDR-FFPE-ID-205_2020-01-28_11-19-13/CPDR-FFPE-ID-205.skyd into the system

11 May 2020 16:25:05,224 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80202/CPDR-FFPE-ID-205_2020-01-28_11-19-13/CPDR-FFPE-ID-205.skyd into the system

11 May 2020 16:25:05,225 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80202/CPDR-FFPE-ID-205_2020-01-28_11-19-13.sky.zip into the system

11 May 2020 16:25:05,229 INFO : Starting import from CPDR-FFPE-ID-205_2020-01-28_11-19-13.sky.zip

11 May 2020 16:25:05,237 INFO : Starting to import Skyline document from CPDR-FFPE-ID-205_2020-01-28_11-19-13.sky.zip

11 May 2020 16:25:05,245 INFO : Expanding CPDR-FFPE-ID-205.skyd

11 May 2020 16:25:05,448 INFO : Expanding CPDR-FFPE-ID-205.sky.view

11 May 2020 16:25:05,449 INFO : Expanding CPDR-FFPE-ID-205.sky

11 May 2020 16:25:05,456 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1

11 May 2020 16:25:05,459 INFO : 6% Done

11 May 2020 16:25:05,608 INFO : Inserting ANXA2

11 May 2020 16:25:05,615 INFO : 13% Done

11 May 2020 16:25:05,842 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:05,843 INFO : 15% Done

11 May 2020 16:25:05,843 INFO : Inserting CAMKK2

11 May 2020 16:25:05,845 INFO : 21% Done

11 May 2020 16:25:05,919 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:05,919 INFO : Inserting CCND1

11 May 2020 16:25:05,922 INFO : 25% Done

11 May 2020 16:25:06,000 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:06,000 INFO : Inserting EGFR

11 May 2020 16:25:06,003 INFO : 31% Done

11 May 2020 16:25:06,062 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:06,062 INFO : Inserting ERG_pan

11 May 2020 16:25:06,065 INFO : 43% Done

11 May 2020 16:25:06,193 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:06,193 INFO : Inserting FOLH1

11 May 2020 16:25:06,196 INFO : 47% Done

11 May 2020 16:25:06,244 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:06,244 INFO : Inserting MMP9

11 May 2020 16:25:06,247 INFO : 58% Done

11 May 2020 16:25:06,360 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:06,360 INFO : 59% Done

11 May 2020 16:25:06,360 INFO : Inserting MUC1

11 May 2020 16:25:06,362 INFO : 64% Done

11 May 2020 16:25:06,413 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:06,414 INFO : Inserting NCOA2

11 May 2020 16:25:06,416 INFO : 67% Done

11 May 2020 16:25:06,453 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:06,453 INFO : Inserting PSA

11 May 2020 16:25:06,455 INFO : 72% Done

11 May 2020 16:25:06,507 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:06,507 INFO : Inserting SMAD4

11 May 2020 16:25:06,509 INFO : 76% Done

11 May 2020 16:25:06,564 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:06,564 INFO : Inserting SPINK1

11 May 2020 16:25:06,566 INFO : 80% Done

11 May 2020 16:25:06,621 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:06,621 INFO : Inserting SPRC

11 May 2020 16:25:06,623 INFO : 85% Done

11 May 2020 16:25:06,663 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:06,664 INFO : Inserting TFF3

11 May 2020 16:25:06,666 INFO : 90% Done

11 May 2020 16:25:06,732 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:06,732 INFO : Inserting TGFB1

11 May 2020 16:25:06,734 INFO : 92% Done

11 May 2020 16:25:06,758 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:06,758 INFO : Inserting VEGFA

11 May 2020 16:25:06,760 INFO : 98% Done

11 May 2020 16:25:06,832 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:06,833 INFO : Done parsing Skyline document.

11 May 2020 16:25:06,835 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:25:06,860 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:25:06,943 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:25:06,960 INFO : Cleaning up temp tables

11 May 2020 16:25:07,472 INFO : Completed import of Skyline document from CPDR-FFPE-ID-205_2020-01-28_11-19-13.sky.zip

11 May 2020 16:25:07,474 INFO : 100% Done

11 May 2020 16:25:07,486 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80202/CPDR-FFPE-ID-205_2020-01-28_11-19-13.sky.zip into the system

11 May 2020 16:25:07,486 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80206/CPDR-FFPE-ID-194_2020-01-28_11-20-10/CPDR-FFPE-ID-194.skyd into the system

11 May 2020 16:25:07,488 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80206/CPDR-FFPE-ID-194_2020-01-28_11-20-10/CPDR-FFPE-ID-194.skyd into the system

11 May 2020 16:25:07,488 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80206/CPDR-FFPE-ID-194_2020-01-28_11-20-10.sky.zip into the system

11 May 2020 16:25:07,491 INFO : Starting import from CPDR-FFPE-ID-194_2020-01-28_11-20-10.sky.zip

11 May 2020 16:25:07,499 INFO : Starting to import Skyline document from CPDR-FFPE-ID-194_2020-01-28_11-20-10.sky.zip

11 May 2020 16:25:07,508 INFO : Expanding CPDR-FFPE-ID-194.skyd

11 May 2020 16:25:07,731 INFO : Expanding CPDR-FFPE-ID-194.sky.view

11 May 2020 16:25:07,732 INFO : Expanding CPDR-FFPE-ID-194.sky

11 May 2020 16:25:07,741 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1

11 May 2020 16:25:07,744 INFO : 6% Done

11 May 2020 16:25:07,898 INFO : Inserting ANXA2

11 May 2020 16:25:07,906 INFO : 15% Done

11 May 2020 16:25:07,979 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:07,979 INFO : Inserting CAMKK2

11 May 2020 16:25:07,982 INFO : 21% Done

11 May 2020 16:25:08,072 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:08,073 INFO : Inserting CCND1

11 May 2020 16:25:08,075 INFO : 26% Done

11 May 2020 16:25:08,142 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:08,142 INFO : Inserting EGFR

11 May 2020 16:25:08,145 INFO : 31% Done

11 May 2020 16:25:08,214 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:08,214 INFO : Inserting ERG_pan

11 May 2020 16:25:08,219 INFO : 42% Done

11 May 2020 16:25:08,341 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:08,341 INFO : Inserting FOLH1

11 May 2020 16:25:08,344 INFO : 46% Done

11 May 2020 16:25:08,403 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:08,403 INFO : Inserting MMP9

11 May 2020 16:25:08,406 INFO : 58% Done

11 May 2020 16:25:08,535 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:08,535 INFO : Inserting MUC1

11 May 2020 16:25:08,537 INFO : 62% Done

11 May 2020 16:25:08,593 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:08,593 INFO : Inserting NCOA2

11 May 2020 16:25:08,595 INFO : 65% Done

11 May 2020 16:25:08,634 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:08,634 INFO : Inserting PSA

11 May 2020 16:25:08,637 INFO : 71% Done

11 May 2020 16:25:08,700 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:08,700 INFO : Inserting SMAD4

11 May 2020 16:25:08,703 INFO : 75% Done

11 May 2020 16:25:08,763 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:08,763 INFO : 76% Done

11 May 2020 16:25:08,763 INFO : Inserting SPINK1

11 May 2020 16:25:08,766 INFO : 81% Done

11 May 2020 16:25:08,836 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:08,836 INFO : Inserting SPRC

11 May 2020 16:25:08,838 INFO : 85% Done

11 May 2020 16:25:08,890 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:08,891 INFO : Inserting TFF3

11 May 2020 16:25:08,893 INFO : 91% Done

11 May 2020 16:25:08,964 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:08,964 INFO : Inserting TGFB1

11 May 2020 16:25:08,966 INFO : 92% Done

11 May 2020 16:25:08,995 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:08,996 INFO : Inserting VEGFA

11 May 2020 16:25:08,998 INFO : 98% Done

11 May 2020 16:25:09,067 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:09,067 INFO : Done parsing Skyline document.

11 May 2020 16:25:09,070 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:25:09,098 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:25:09,146 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:25:09,165 INFO : Cleaning up temp tables

11 May 2020 16:25:09,682 INFO : Completed import of Skyline document from CPDR-FFPE-ID-194_2020-01-28_11-20-10.sky.zip

11 May 2020 16:25:09,684 INFO : 100% Done

11 May 2020 16:25:09,696 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80206/CPDR-FFPE-ID-194_2020-01-28_11-20-10.sky.zip into the system

11 May 2020 16:25:09,696 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80212/CPDR-FFPE-ID-448_2020-01-28_11-21-42/CPDR-FFPE-ID-448.skyd into the system

11 May 2020 16:25:09,697 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80212/CPDR-FFPE-ID-448_2020-01-28_11-21-42/CPDR-FFPE-ID-448.skyd into the system

11 May 2020 16:25:09,698 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80212/CPDR-FFPE-ID-448_2020-01-28_11-21-42.sky.zip into the system

11 May 2020 16:25:09,701 INFO : Starting import from CPDR-FFPE-ID-448_2020-01-28_11-21-42.sky.zip

11 May 2020 16:25:09,708 INFO : Starting to import Skyline document from CPDR-FFPE-ID-448_2020-01-28_11-21-42.sky.zip

11 May 2020 16:25:09,724 INFO : Expanding CPDR-FFPE-ID-448.skyd

11 May 2020 16:25:10,077 INFO : Expanding CPDR-FFPE-ID-448.sky.view

11 May 2020 16:25:10,078 INFO : Expanding CPDR-FFPE-ID-448.sky

11 May 2020 16:25:10,087 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1

11 May 2020 16:25:10,091 INFO : 6% Done

11 May 2020 16:25:10,361 INFO : 8% Done

11 May 2020 16:25:10,361 INFO : Inserting ANXA2

11 May 2020 16:25:10,369 INFO : 14% Done

11 May 2020 16:25:10,502 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:10,502 INFO : Inserting CAMKK2

11 May 2020 16:25:10,505 INFO : 20% Done

11 May 2020 16:25:10,618 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:10,618 INFO : Inserting CCND1

11 May 2020 16:25:10,621 INFO : 29% Done

11 May 2020 16:25:10,792 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:10,792 INFO : Inserting EGFR

11 May 2020 16:25:10,795 INFO : 33% Done

11 May 2020 16:25:10,877 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:10,877 INFO : Inserting ERG_pan

11 May 2020 16:25:10,881 INFO : 41% Done

11 May 2020 16:25:11,032 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:11,033 INFO : Inserting FOLH1

11 May 2020 16:25:11,035 INFO : 44% Done

11 May 2020 16:25:11,094 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:11,094 INFO : Inserting MMP9

11 May 2020 16:25:11,099 INFO : 52% Done

11 May 2020 16:25:11,253 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:11,253 INFO : Inserting MUC1

11 May 2020 16:25:11,255 INFO : 56% Done

11 May 2020 16:25:11,321 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:11,321 INFO : Inserting NCOA2

11 May 2020 16:25:11,324 INFO : 60% Done

11 May 2020 16:25:11,402 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:11,402 INFO : Inserting PSA

11 May 2020 16:25:11,406 INFO : 66% Done

11 May 2020 16:25:11,534 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:11,535 INFO : Inserting SMAD4

11 May 2020 16:25:11,538 INFO : 71% Done

11 May 2020 16:25:11,636 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:11,637 INFO : Inserting SPINK1

11 May 2020 16:25:11,640 INFO : 77% Done

11 May 2020 16:25:11,778 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:11,778 INFO : Inserting SPRC

11 May 2020 16:25:11,782 INFO : 82% Done

11 May 2020 16:25:11,878 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:11,879 INFO : Inserting TFF3

11 May 2020 16:25:11,883 INFO : 89% Done

11 May 2020 16:25:12,011 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:12,011 INFO : Inserting TGFB1

11 May 2020 16:25:12,014 INFO : 92% Done

11 May 2020 16:25:12,071 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:12,071 INFO : Inserting VEGFA

11 May 2020 16:25:12,074 INFO : 98% Done

11 May 2020 16:25:12,189 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:12,189 INFO : Done parsing Skyline document.

11 May 2020 16:25:12,192 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:25:12,225 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:25:12,309 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:25:12,340 INFO : Cleaning up temp tables

11 May 2020 16:25:12,829 INFO : Completed import of Skyline document from CPDR-FFPE-ID-448_2020-01-28_11-21-42.sky.zip

11 May 2020 16:25:12,831 INFO : 100% Done

11 May 2020 16:25:12,844 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80212/CPDR-FFPE-ID-448_2020-01-28_11-21-42.sky.zip into the system

11 May 2020 16:25:12,844 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80214/CPDR-FFPE-ID-312_2020-01-28_11-22-19/CPDR-FFPE-ID-312.skyd into the system

11 May 2020 16:25:12,845 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80214/CPDR-FFPE-ID-312_2020-01-28_11-22-19/CPDR-FFPE-ID-312.skyd into the system

11 May 2020 16:25:12,845 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80214/CPDR-FFPE-ID-312_2020-01-28_11-22-19.sky.zip into the system

11 May 2020 16:25:12,851 INFO : Starting import from CPDR-FFPE-ID-312_2020-01-28_11-22-19.sky.zip

11 May 2020 16:25:12,858 INFO : Starting to import Skyline document from CPDR-FFPE-ID-312_2020-01-28_11-22-19.sky.zip

11 May 2020 16:25:12,866 INFO : Expanding CPDR-FFPE-ID-312.skyd

11 May 2020 16:25:13,085 INFO : Expanding CPDR-FFPE-ID-312.sky.view

11 May 2020 16:25:13,085 INFO : Expanding CPDR-FFPE-ID-312.sky

11 May 2020 16:25:13,094 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1

11 May 2020 16:25:13,097 INFO : 6% Done

11 May 2020 16:25:13,277 INFO : Inserting ANXA2

11 May 2020 16:25:13,287 INFO : 12% Done

11 May 2020 16:25:13,385 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:13,385 INFO : 14% Done

11 May 2020 16:25:13,385 INFO : Inserting CAMKK2

11 May 2020 16:25:13,389 INFO : 19% Done

11 May 2020 16:25:13,481 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:13,481 INFO : Inserting CCND1

11 May 2020 16:25:13,485 INFO : 26% Done

11 May 2020 16:25:13,592 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:13,592 INFO : Inserting EGFR

11 May 2020 16:25:13,594 INFO : 31% Done

11 May 2020 16:25:13,656 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:13,656 INFO : Inserting ERG_pan

11 May 2020 16:25:13,660 INFO : 40% Done

11 May 2020 16:25:13,779 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:13,779 INFO : Inserting FOLH1

11 May 2020 16:25:13,781 INFO : 43% Done

11 May 2020 16:25:13,830 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:13,830 INFO : Inserting MMP9

11 May 2020 16:25:13,834 INFO : 53% Done

11 May 2020 16:25:13,962 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:13,962 INFO : Inserting MUC1

11 May 2020 16:25:13,964 INFO : 57% Done

11 May 2020 16:25:14,016 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:14,017 INFO : Inserting NCOA2

11 May 2020 16:25:14,019 INFO : 64% Done

11 May 2020 16:25:14,098 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:14,098 INFO : Inserting PSA

11 May 2020 16:25:14,115 INFO : 69% Done

11 May 2020 16:25:14,201 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:14,201 INFO : Inserting SMAD4

11 May 2020 16:25:14,205 INFO : 74% Done

11 May 2020 16:25:14,275 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:14,275 INFO : Inserting SPINK1

11 May 2020 16:25:14,278 INFO : 80% Done

11 May 2020 16:25:14,355 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:14,356 INFO : Inserting SPRC

11 May 2020 16:25:14,358 INFO : 84% Done

11 May 2020 16:25:14,422 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:14,423 INFO : Inserting TFF3

11 May 2020 16:25:14,425 INFO : 90% Done

11 May 2020 16:25:14,511 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:14,511 INFO : 91% Done

11 May 2020 16:25:14,511 INFO : Inserting TGFB1

11 May 2020 16:25:14,513 INFO : 92% Done

11 May 2020 16:25:14,538 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:14,538 INFO : Inserting VEGFA

11 May 2020 16:25:14,541 INFO : 98% Done

11 May 2020 16:25:14,622 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:14,622 INFO : Done parsing Skyline document.

11 May 2020 16:25:14,625 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:25:14,653 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:25:14,707 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:25:14,727 INFO : Cleaning up temp tables

11 May 2020 16:25:15,220 INFO : Completed import of Skyline document from CPDR-FFPE-ID-312_2020-01-28_11-22-19.sky.zip

11 May 2020 16:25:15,222 INFO : 100% Done

11 May 2020 16:25:15,236 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80214/CPDR-FFPE-ID-312_2020-01-28_11-22-19.sky.zip into the system

11 May 2020 16:25:15,236 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80215/CPDR-FFPE-ID-414_2020-01-28_11-22-32/CPDR-FFPE-ID-414.skyd into the system

11 May 2020 16:25:15,238 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80215/CPDR-FFPE-ID-414_2020-01-28_11-22-32/CPDR-FFPE-ID-414.skyd into the system

11 May 2020 16:25:15,238 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80215/CPDR-FFPE-ID-414_2020-01-28_11-22-32.sky.zip into the system

11 May 2020 16:25:15,244 INFO : Starting import from CPDR-FFPE-ID-414_2020-01-28_11-22-32.sky.zip

11 May 2020 16:25:15,251 INFO : Starting to import Skyline document from CPDR-FFPE-ID-414_2020-01-28_11-22-32.sky.zip

11 May 2020 16:25:15,260 INFO : Expanding CPDR-FFPE-ID-414.skyd

11 May 2020 16:25:15,477 INFO : Expanding CPDR-FFPE-ID-414.sky.view

11 May 2020 16:25:15,477 INFO : Expanding CPDR-FFPE-ID-414.sky

11 May 2020 16:25:15,486 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1

11 May 2020 16:25:15,489 INFO : 6% Done

11 May 2020 16:25:15,642 INFO : Inserting ANXA2

11 May 2020 16:25:15,650 INFO : 12% Done

11 May 2020 16:25:15,763 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:15,763 INFO : 14% Done

11 May 2020 16:25:15,764 INFO : Inserting CAMKK2

11 May 2020 16:25:15,767 INFO : 19% Done

11 May 2020 16:25:15,860 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:15,861 INFO : Inserting CCND1

11 May 2020 16:25:15,864 INFO : 26% Done

11 May 2020 16:25:15,973 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:15,974 INFO : Inserting EGFR

11 May 2020 16:25:15,976 INFO : 31% Done

11 May 2020 16:25:16,040 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:16,040 INFO : Inserting ERG_pan

11 May 2020 16:25:16,043 INFO : 40% Done

11 May 2020 16:25:16,171 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:16,172 INFO : Inserting FOLH1

11 May 2020 16:25:16,174 INFO : 43% Done

11 May 2020 16:25:16,224 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:16,225 INFO : Inserting MMP9

11 May 2020 16:25:16,228 INFO : 53% Done

11 May 2020 16:25:16,354 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:16,354 INFO : Inserting MUC1

11 May 2020 16:25:16,357 INFO : 57% Done

11 May 2020 16:25:16,415 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:16,415 INFO : Inserting NCOA2

11 May 2020 16:25:16,418 INFO : 64% Done

11 May 2020 16:25:16,498 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:16,498 INFO : Inserting PSA

11 May 2020 16:25:16,501 INFO : 69% Done

11 May 2020 16:25:16,544 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:16,544 INFO : Inserting SMAD4

11 May 2020 16:25:16,545 INFO : 74% Done

11 May 2020 16:25:16,577 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:16,577 INFO : Inserting SPINK1

11 May 2020 16:25:16,579 INFO : 80% Done

11 May 2020 16:25:16,613 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:16,613 INFO : Inserting SPRC

11 May 2020 16:25:16,614 INFO : 84% Done

11 May 2020 16:25:16,644 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:16,644 INFO : Inserting TFF3

11 May 2020 16:25:16,645 INFO : 91% Done

11 May 2020 16:25:16,687 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:16,687 INFO : Inserting TGFB1

11 May 2020 16:25:16,688 INFO : 92% Done

11 May 2020 16:25:16,701 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:16,701 INFO : Inserting VEGFA

11 May 2020 16:25:16,702 INFO : 98% Done

11 May 2020 16:25:16,741 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:16,742 INFO : Done parsing Skyline document.

11 May 2020 16:25:16,743 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:25:16,759 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:25:16,787 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:25:16,796 INFO : Cleaning up temp tables

11 May 2020 16:25:17,148 INFO : Completed import of Skyline document from CPDR-FFPE-ID-414_2020-01-28_11-22-32.sky.zip

11 May 2020 16:25:17,150 INFO : 100% Done

11 May 2020 16:25:17,160 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80215/CPDR-FFPE-ID-414_2020-01-28_11-22-32.sky.zip into the system

11 May 2020 16:25:17,160 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80221/CPDR-FFPE-ID-446_2020-01-28_13-24-11/CPDR-FFPE-ID-446.skyd into the system

11 May 2020 16:25:17,161 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80221/CPDR-FFPE-ID-446_2020-01-28_13-24-11/CPDR-FFPE-ID-446.skyd into the system

11 May 2020 16:25:17,161 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80221/CPDR-FFPE-ID-446_2020-01-28_13-24-11.sky.zip into the system

11 May 2020 16:25:17,165 INFO : Starting import from CPDR-FFPE-ID-446_2020-01-28_13-24-11.sky.zip

11 May 2020 16:25:17,172 INFO : Starting to import Skyline document from CPDR-FFPE-ID-446_2020-01-28_13-24-11.sky.zip

11 May 2020 16:25:17,182 INFO : Expanding CPDR-FFPE-ID-446.skyd

11 May 2020 16:25:17,436 INFO : Expanding CPDR-FFPE-ID-446.sky.view

11 May 2020 16:25:17,437 INFO : Expanding CPDR-FFPE-ID-446.sky

11 May 2020 16:25:17,445 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:25:17,448 INFO : 6% Done

11 May 2020 16:25:17,755 INFO : Inserting ANXA2

11 May 2020 16:25:17,762 INFO : 14% Done

11 May 2020 16:25:17,879 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:17,879 INFO : Inserting CAMKK2

11 May 2020 16:25:17,882 INFO : 21% Done

11 May 2020 16:25:17,980 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:17,980 INFO : 22% Done

11 May 2020 16:25:17,980 INFO : Inserting CCND1

11 May 2020 16:25:17,983 INFO : 28% Done

11 May 2020 16:25:18,066 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:18,066 INFO : Inserting EGFR

11 May 2020 16:25:18,067 INFO : 33% Done

11 May 2020 16:25:18,136 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:18,136 INFO : Inserting ERG_pan

11 May 2020 16:25:18,138 INFO : 43% Done

11 May 2020 16:25:18,260 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:18,260 INFO : Inserting FOLH1

11 May 2020 16:25:18,261 INFO : 48% Done

11 May 2020 16:25:18,325 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:18,325 INFO : 49% Done

11 May 2020 16:25:18,325 INFO : Inserting MMP9

11 May 2020 16:25:18,327 INFO : 59% Done

11 May 2020 16:25:18,456 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:18,456 INFO : Inserting MUC1

11 May 2020 16:25:18,457 INFO : 63% Done

11 May 2020 16:25:18,517 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:18,517 INFO : Inserting NCOA2

11 May 2020 16:25:18,519 INFO : 66% Done

11 May 2020 16:25:18,565 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:18,565 INFO : Inserting PSA

11 May 2020 16:25:18,566 INFO : 72% Done

11 May 2020 16:25:18,632 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:18,632 INFO : Inserting SMAD4

11 May 2020 16:25:18,634 INFO : 75% Done

11 May 2020 16:25:18,697 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:18,697 INFO : Inserting SPINK1

11 May 2020 16:25:18,699 INFO : 82% Done

11 May 2020 16:25:18,777 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:18,777 INFO : Inserting SPRC

11 May 2020 16:25:18,778 INFO : 86% Done

11 May 2020 16:25:18,836 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:18,836 INFO : Inserting TFF3

11 May 2020 16:25:18,844 INFO : 92% Done

11 May 2020 16:25:18,917 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:18,917 INFO : Inserting TGFB1

11 May 2020 16:25:18,918 INFO : 94% Done

11 May 2020 16:25:18,942 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:18,942 INFO : Inserting VEGFA

11 May 2020 16:25:18,944 INFO : 98% Done

11 May 2020 16:25:19,013 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:19,014 INFO : Done parsing Skyline document.

11 May 2020 16:25:19,015 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:25:19,044 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:25:19,116 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:25:19,143 INFO : Cleaning up temp tables

11 May 2020 16:25:19,514 INFO : Completed import of Skyline document from CPDR-FFPE-ID-446_2020-01-28_13-24-11.sky.zip

11 May 2020 16:25:19,516 INFO : 100% Done

11 May 2020 16:25:19,528 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80221/CPDR-FFPE-ID-446_2020-01-28_13-24-11.sky.zip into the system

11 May 2020 16:25:19,528 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80222/CPDR-FFPE-ID-441_2020-01-28_13-24-33/CPDR-FFPE-ID-441.skyd into the system

11 May 2020 16:25:19,529 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80222/CPDR-FFPE-ID-441_2020-01-28_13-24-33/CPDR-FFPE-ID-441.skyd into the system

11 May 2020 16:25:19,529 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80222/CPDR-FFPE-ID-441_2020-01-28_13-24-33.sky.zip into the system

11 May 2020 16:25:19,533 INFO : Starting import from CPDR-FFPE-ID-441_2020-01-28_13-24-33.sky.zip

11 May 2020 16:25:19,540 INFO : Starting to import Skyline document from CPDR-FFPE-ID-441_2020-01-28_13-24-33.sky.zip

11 May 2020 16:25:19,548 INFO : Expanding CPDR-FFPE-ID-441.skyd

11 May 2020 16:25:19,742 INFO : Expanding CPDR-FFPE-ID-441.sky.view

11 May 2020 16:25:19,742 INFO : Expanding CPDR-FFPE-ID-441.sky

11 May 2020 16:25:19,751 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:25:19,754 INFO : 6% Done

11 May 2020 16:25:19,892 INFO : Inserting ANXA2

11 May 2020 16:25:19,899 INFO : 14% Done

11 May 2020 16:25:19,965 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:19,965 INFO : Inserting CAMKK2

11 May 2020 16:25:19,967 INFO : 20% Done

11 May 2020 16:25:20,028 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:20,028 INFO : Inserting CCND1

11 May 2020 16:25:20,030 INFO : 28% Done

11 May 2020 16:25:20,111 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:20,111 INFO : Inserting EGFR

11 May 2020 16:25:20,112 INFO : 33% Done

11 May 2020 16:25:20,161 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:20,161 INFO : Inserting ERG_pan

11 May 2020 16:25:20,163 INFO : 41% Done

11 May 2020 16:25:20,230 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:20,230 INFO : Inserting FOLH1

11 May 2020 16:25:20,231 INFO : 44% Done

11 May 2020 16:25:20,274 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:20,274 INFO : Inserting MMP9

11 May 2020 16:25:20,276 INFO : 51% Done

11 May 2020 16:25:20,350 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:20,350 INFO : Inserting MUC1

11 May 2020 16:25:20,351 INFO : 56% Done

11 May 2020 16:25:20,391 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:20,391 INFO : Inserting NCOA2

11 May 2020 16:25:20,393 INFO : 62% Done

11 May 2020 16:25:20,441 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:20,441 INFO : Inserting PSA

11 May 2020 16:25:20,443 INFO : 68% Done

11 May 2020 16:25:20,508 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:20,508 INFO : Inserting SMAD4

11 May 2020 16:25:20,509 INFO : 73% Done

11 May 2020 16:25:20,552 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:20,552 INFO : Inserting SPINK1

11 May 2020 16:25:20,554 INFO : 78% Done

11 May 2020 16:25:20,623 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:20,624 INFO : Inserting SPRC

11 May 2020 16:25:20,625 INFO : 84% Done

11 May 2020 16:25:20,676 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:20,676 INFO : Inserting TFF3

11 May 2020 16:25:20,677 INFO : 90% Done

11 May 2020 16:25:20,736 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:20,736 INFO : Inserting TGFB1

11 May 2020 16:25:20,737 INFO : 94% Done

11 May 2020 16:25:20,762 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:20,762 INFO : Inserting VEGFA

11 May 2020 16:25:20,763 INFO : 98% Done

11 May 2020 16:25:20,818 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:20,818 INFO : Done parsing Skyline document.

11 May 2020 16:25:20,820 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:25:20,845 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:25:20,893 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:25:20,911 INFO : Cleaning up temp tables

11 May 2020 16:25:21,335 INFO : Completed import of Skyline document from CPDR-FFPE-ID-441_2020-01-28_13-24-33.sky.zip

11 May 2020 16:25:21,337 INFO : 100% Done

11 May 2020 16:25:21,349 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80222/CPDR-FFPE-ID-441_2020-01-28_13-24-33.sky.zip into the system

11 May 2020 16:25:21,350 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80225/CPDR-FFPE-ID-458_2020-01-28_13-25-52/CPDR-FFPE-ID-458.skyd into the system

11 May 2020 16:25:21,351 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80225/CPDR-FFPE-ID-458_2020-01-28_13-25-52/CPDR-FFPE-ID-458.skyd into the system

11 May 2020 16:25:21,351 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80225/CPDR-FFPE-ID-458_2020-01-28_13-25-52.sky.zip into the system

11 May 2020 16:25:21,355 INFO : Starting import from CPDR-FFPE-ID-458_2020-01-28_13-25-52.sky.zip

11 May 2020 16:25:21,364 INFO : Starting to import Skyline document from CPDR-FFPE-ID-458_2020-01-28_13-25-52.sky.zip

11 May 2020 16:25:21,373 INFO : Expanding CPDR-FFPE-ID-458.skyd

11 May 2020 16:25:21,625 INFO : Expanding CPDR-FFPE-ID-458.sky.view

11 May 2020 16:25:21,626 INFO : Expanding CPDR-FFPE-ID-458.sky

11 May 2020 16:25:21,635 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:25:21,639 INFO : 5% Done

11 May 2020 16:25:21,872 INFO : Inserting ANXA2

11 May 2020 16:25:21,880 INFO : 13% Done

11 May 2020 16:25:21,976 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:21,976 INFO : Inserting CAMKK2

11 May 2020 16:25:21,978 INFO : 19% Done

11 May 2020 16:25:22,062 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:22,063 INFO : Inserting CCND1

11 May 2020 16:25:22,066 INFO : 27% Done

11 May 2020 16:25:22,188 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:22,188 INFO : Inserting EGFR

11 May 2020 16:25:22,191 INFO : 31% Done

11 May 2020 16:25:22,257 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:22,257 INFO : Inserting ERG_pan

11 May 2020 16:25:22,260 INFO : 40% Done

11 May 2020 16:25:22,375 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:22,375 INFO : Inserting FOLH1

11 May 2020 16:25:22,378 INFO : 45% Done

11 May 2020 16:25:22,448 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:22,449 INFO : Inserting MMP9

11 May 2020 16:25:22,452 INFO : 53% Done

11 May 2020 16:25:22,569 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:22,569 INFO : Inserting MUC1

11 May 2020 16:25:22,572 INFO : 58% Done

11 May 2020 16:25:22,643 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:22,643 INFO : Inserting NCOA2

11 May 2020 16:25:22,646 INFO : 64% Done

11 May 2020 16:25:22,724 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:22,725 INFO : Inserting PSA

11 May 2020 16:25:22,727 INFO : 70% Done

11 May 2020 16:25:22,822 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:22,822 INFO : Inserting SMAD4

11 May 2020 16:25:22,825 INFO : 74% Done

11 May 2020 16:25:22,902 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:22,903 INFO : Inserting SPINK1

11 May 2020 16:25:22,906 INFO : 81% Done

11 May 2020 16:25:23,023 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:23,023 INFO : Inserting SPRC

11 May 2020 16:25:23,026 INFO : 86% Done

11 May 2020 16:25:23,115 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:23,115 INFO : Inserting TFF3

11 May 2020 16:25:23,118 INFO : 91% Done

11 May 2020 16:25:23,191 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:23,191 INFO : Inserting TGFB1

11 May 2020 16:25:23,193 INFO : 93% Done

11 May 2020 16:25:23,225 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:23,225 INFO : Inserting VEGFA

11 May 2020 16:25:23,228 INFO : 98% Done

11 May 2020 16:25:23,329 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:23,329 INFO : Done parsing Skyline document.

11 May 2020 16:25:23,332 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:25:23,361 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:25:23,425 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:25:23,449 INFO : Cleaning up temp tables

11 May 2020 16:25:23,942 INFO : Completed import of Skyline document from CPDR-FFPE-ID-458_2020-01-28_13-25-52.sky.zip

11 May 2020 16:25:23,945 INFO : 100% Done

11 May 2020 16:25:23,958 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80225/CPDR-FFPE-ID-458_2020-01-28_13-25-52.sky.zip into the system

11 May 2020 16:25:23,958 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80228/CPDR-FFPE-ID-465_2020-01-28_13-26-20/CPDR-FFPE-ID-465.skyd into the system

11 May 2020 16:25:23,959 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80228/CPDR-FFPE-ID-465_2020-01-28_13-26-20/CPDR-FFPE-ID-465.skyd into the system

11 May 2020 16:25:23,959 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80228/CPDR-FFPE-ID-465_2020-01-28_13-26-20.sky.zip into the system

11 May 2020 16:25:23,963 INFO : Starting import from CPDR-FFPE-ID-465_2020-01-28_13-26-20.sky.zip

11 May 2020 16:25:23,969 INFO : Starting to import Skyline document from CPDR-FFPE-ID-465_2020-01-28_13-26-20.sky.zip

11 May 2020 16:25:23,979 INFO : Expanding CPDR-FFPE-ID-465.skyd

11 May 2020 16:25:24,196 INFO : Expanding CPDR-FFPE-ID-465.sky.view

11 May 2020 16:25:24,197 INFO : Expanding CPDR-FFPE-ID-465.sky

11 May 2020 16:25:24,205 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:25:24,208 INFO : 6% Done

11 May 2020 16:25:24,398 INFO : Inserting ANXA2

11 May 2020 16:25:24,407 INFO : 12% Done

11 May 2020 16:25:24,468 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:24,468 INFO : Inserting CAMKK2

11 May 2020 16:25:24,470 INFO : 17% Done

11 May 2020 16:25:24,529 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:24,529 INFO : Inserting CCND1

11 May 2020 16:25:24,532 INFO : 25% Done

11 May 2020 16:25:24,617 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:24,617 INFO : Inserting EGFR

11 May 2020 16:25:24,620 INFO : 30% Done

11 May 2020 16:25:24,689 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:24,690 INFO : Inserting ERG_pan

11 May 2020 16:25:24,692 INFO : 39% Done

11 May 2020 16:25:24,792 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:24,792 INFO : Inserting FOLH1

11 May 2020 16:25:24,795 INFO : 44% Done

11 May 2020 16:25:24,871 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:24,871 INFO : Inserting MMP9

11 May 2020 16:25:24,874 INFO : 54% Done

11 May 2020 16:25:24,977 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:24,977 INFO : Inserting MUC1

11 May 2020 16:25:24,980 INFO : 60% Done

11 May 2020 16:25:25,063 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:25,063 INFO : Inserting NCOA2

11 May 2020 16:25:25,065 INFO : 64% Done

11 May 2020 16:25:25,120 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:25,120 INFO : Inserting PSA

11 May 2020 16:25:25,123 INFO : 71% Done

11 May 2020 16:25:25,197 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:25,197 INFO : Inserting SMAD4

11 May 2020 16:25:25,199 INFO : 74% Done

11 May 2020 16:25:25,244 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:25,245 INFO : Inserting SPINK1

11 May 2020 16:25:25,247 INFO : 79% Done

11 May 2020 16:25:25,317 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:25,317 INFO : Inserting SPRC

11 May 2020 16:25:25,319 INFO : 85% Done

11 May 2020 16:25:25,379 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:25,380 INFO : Inserting TFF3

11 May 2020 16:25:25,382 INFO : 91% Done

11 May 2020 16:25:25,463 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:25,463 INFO : Inserting TGFB1

11 May 2020 16:25:25,465 INFO : 94% Done

11 May 2020 16:25:25,495 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:25,495 INFO : Inserting VEGFA

11 May 2020 16:25:25,498 INFO : 98% Done

11 May 2020 16:25:25,558 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:25,558 INFO : Done parsing Skyline document.

11 May 2020 16:25:25,560 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:25:25,587 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:25:25,641 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:25:25,662 INFO : Cleaning up temp tables

11 May 2020 16:25:26,145 INFO : Completed import of Skyline document from CPDR-FFPE-ID-465_2020-01-28_13-26-20.sky.zip

11 May 2020 16:25:26,147 INFO : 100% Done

11 May 2020 16:25:26,159 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80228/CPDR-FFPE-ID-465_2020-01-28_13-26-20.sky.zip into the system

11 May 2020 16:25:26,159 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80234/CPDR-FFPE-ID-437_2020-01-28_13-29-18/CPDR-FFPE-ID-437.skyd into the system

11 May 2020 16:25:26,161 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80234/CPDR-FFPE-ID-437_2020-01-28_13-29-18/CPDR-FFPE-ID-437.skyd into the system

11 May 2020 16:25:26,161 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80234/CPDR-FFPE-ID-437_2020-01-28_13-29-18.sky.zip into the system

11 May 2020 16:25:26,164 INFO : Starting import from CPDR-FFPE-ID-437_2020-01-28_13-29-18.sky.zip

11 May 2020 16:25:26,171 INFO : Starting to import Skyline document from CPDR-FFPE-ID-437_2020-01-28_13-29-18.sky.zip

11 May 2020 16:25:26,178 INFO : Expanding CPDR-FFPE-ID-437.skyd

11 May 2020 16:25:26,355 INFO : Expanding CPDR-FFPE-ID-437.sky.view

11 May 2020 16:25:26,355 INFO : Expanding CPDR-FFPE-ID-437.sky

11 May 2020 16:25:26,363 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 16:25:26,366 INFO : 6% Done

11 May 2020 16:25:26,514 INFO : Inserting ANXA2

11 May 2020 16:25:26,522 INFO : 13% Done

11 May 2020 16:25:26,589 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:26,589 INFO : Inserting CAMKK2

11 May 2020 16:25:26,591 INFO : 19% Done

11 May 2020 16:25:26,650 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:26,650 INFO : Inserting CCND1

11 May 2020 16:25:26,653 INFO : 26% Done

11 May 2020 16:25:26,740 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:26,740 INFO : 27% Done

11 May 2020 16:25:26,740 INFO : Inserting EGFR

11 May 2020 16:25:26,742 INFO : 30% Done

11 May 2020 16:25:26,790 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:26,790 INFO : Inserting ERG_pan

11 May 2020 16:25:26,793 INFO : 37% Done

11 May 2020 16:25:26,878 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:26,878 INFO : 39% Done

11 May 2020 16:25:26,878 INFO : Inserting FOLH1

11 May 2020 16:25:26,880 INFO : 42% Done

11 May 2020 16:25:26,926 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:26,926 INFO : Inserting MMP9

11 May 2020 16:25:26,930 INFO : 49% Done

11 May 2020 16:25:27,038 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:27,039 INFO : 51% Done

11 May 2020 16:25:27,039 INFO : Inserting MUC1

11 May 2020 16:25:27,041 INFO : 54% Done

11 May 2020 16:25:27,090 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:27,090 INFO : 55% Done

11 May 2020 16:25:27,090 INFO : Inserting NCOA2

11 May 2020 16:25:27,092 INFO : 60% Done

11 May 2020 16:25:27,155 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:27,155 INFO : Inserting PSA

11 May 2020 16:25:27,158 INFO : 67% Done

11 May 2020 16:25:27,239 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:27,239 INFO : Inserting SMAD4

11 May 2020 16:25:27,241 INFO : 72% Done

11 May 2020 16:25:27,292 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:27,292 INFO : Inserting SPINK1

11 May 2020 16:25:27,311 INFO : 78% Done

11 May 2020 16:25:27,403 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:27,403 INFO : Inserting SPRC

11 May 2020 16:25:27,406 INFO : 84% Done

11 May 2020 16:25:27,473 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:27,473 INFO : Inserting TFF3

11 May 2020 16:25:27,476 INFO : 91% Done

11 May 2020 16:25:27,558 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:27,558 INFO : Inserting TGFB1

11 May 2020 16:25:27,560 INFO : 93% Done

11 May 2020 16:25:27,589 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:27,590 INFO : Inserting VEGFA

11 May 2020 16:25:27,592 INFO : 98% Done

11 May 2020 16:25:27,654 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:27,654 INFO : Done parsing Skyline document.

11 May 2020 16:25:27,656 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:25:27,682 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:25:27,728 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:25:27,746 INFO : Cleaning up temp tables

11 May 2020 16:25:28,253 INFO : Completed import of Skyline document from CPDR-FFPE-ID-437_2020-01-28_13-29-18.sky.zip

11 May 2020 16:25:28,255 INFO : 100% Done

11 May 2020 16:25:28,267 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80234/CPDR-FFPE-ID-437_2020-01-28_13-29-18.sky.zip into the system

11 May 2020 16:25:28,267 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80272/CPDR-FFPE-ID-505_2020-01-28_13-39-54/CPDR-FFPE-ID-505.skyd into the system

11 May 2020 16:25:28,268 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80272/CPDR-FFPE-ID-505_2020-01-28_13-39-54/CPDR-FFPE-ID-505.skyd into the system

11 May 2020 16:25:28,268 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80272/CPDR-FFPE-ID-505_2020-01-28_13-39-54.sky.zip into the system

11 May 2020 16:25:28,272 INFO : Starting import from CPDR-FFPE-ID-505_2020-01-28_13-39-54.sky.zip

11 May 2020 16:25:28,279 INFO : Starting to import Skyline document from CPDR-FFPE-ID-505_2020-01-28_13-39-54.sky.zip

11 May 2020 16:25:28,286 INFO : Expanding CPDR-FFPE-ID-505.skyd

11 May 2020 16:25:28,495 INFO : Expanding CPDR-FFPE-ID-505.sky.view

11 May 2020 16:25:28,496 INFO : Expanding CPDR-FFPE-ID-505.sky

11 May 2020 16:25:28,504 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:25:28,508 INFO : 5% Done

11 May 2020 16:25:28,643 INFO : Inserting ANXA2

11 May 2020 16:25:28,651 INFO : 15% Done

11 May 2020 16:25:28,759 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:28,759 INFO : Inserting CAMKK2

11 May 2020 16:25:28,762 INFO : 23% Done

11 May 2020 16:25:28,859 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:28,859 INFO : Inserting CCND1

11 May 2020 16:25:28,862 INFO : 29% Done

11 May 2020 16:25:28,980 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:28,980 INFO : Inserting EGFR

11 May 2020 16:25:28,982 INFO : 34% Done

11 May 2020 16:25:29,045 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:29,045 INFO : Inserting ERG_pan

11 May 2020 16:25:29,047 INFO : 39% Done

11 May 2020 16:25:29,119 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:29,119 INFO : Inserting FOLH1

11 May 2020 16:25:29,121 INFO : 43% Done

11 May 2020 16:25:29,161 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:29,161 INFO : Inserting MMP9

11 May 2020 16:25:29,163 INFO : 48% Done

11 May 2020 16:25:29,236 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:29,237 INFO : Inserting MUC1

11 May 2020 16:25:29,238 INFO : 52% Done

11 May 2020 16:25:29,283 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:29,283 INFO : Inserting NCOA2

11 May 2020 16:25:29,286 INFO : 58% Done

11 May 2020 16:25:29,367 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:29,367 INFO : Inserting PSA

11 May 2020 16:25:29,370 INFO : 64% Done

11 May 2020 16:25:29,449 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:29,449 INFO : Inserting SMAD4

11 May 2020 16:25:29,452 INFO : 69% Done

11 May 2020 16:25:29,523 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:29,523 INFO : Inserting SPINK1

11 May 2020 16:25:29,526 INFO : 75% Done

11 May 2020 16:25:29,607 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:29,608 INFO : Inserting SPRC

11 May 2020 16:25:29,610 INFO : 81% Done

11 May 2020 16:25:29,694 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:29,694 INFO : 82% Done

11 May 2020 16:25:29,695 INFO : Inserting TFF3

11 May 2020 16:25:29,697 INFO : 88% Done

11 May 2020 16:25:29,785 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:29,785 INFO : Inserting TGFB1

11 May 2020 16:25:29,787 INFO : 91% Done

11 May 2020 16:25:29,835 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:29,836 INFO : Inserting VEGFA

11 May 2020 16:25:29,838 INFO : 98% Done

11 May 2020 16:25:29,937 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:29,937 INFO : Done parsing Skyline document.

11 May 2020 16:25:29,939 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:25:29,966 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:25:30,025 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:25:30,048 INFO : Cleaning up temp tables

11 May 2020 16:25:30,545 INFO : Completed import of Skyline document from CPDR-FFPE-ID-505_2020-01-28_13-39-54.sky.zip

11 May 2020 16:25:30,547 INFO : 100% Done

11 May 2020 16:25:30,559 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80272/CPDR-FFPE-ID-505_2020-01-28_13-39-54.sky.zip into the system

11 May 2020 16:25:30,559 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80273/CPDR-FFPE-ID-701_2020-01-28_13-39-56/CPDR-FFPE-ID-701.skyd into the system

11 May 2020 16:25:30,561 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80273/CPDR-FFPE-ID-701_2020-01-28_13-39-56/CPDR-FFPE-ID-701.skyd into the system

11 May 2020 16:25:30,561 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80273/CPDR-FFPE-ID-701_2020-01-28_13-39-56.sky.zip into the system

11 May 2020 16:25:30,564 INFO : Starting import from CPDR-FFPE-ID-701_2020-01-28_13-39-56.sky.zip

11 May 2020 16:25:30,572 INFO : Starting to import Skyline document from CPDR-FFPE-ID-701_2020-01-28_13-39-56.sky.zip

11 May 2020 16:25:30,577 INFO : Expanding CPDR-FFPE-ID-701.skyd

11 May 2020 16:25:30,757 INFO : Expanding CPDR-FFPE-ID-701.sky.view

11 May 2020 16:25:30,758 INFO : Expanding CPDR-FFPE-ID-701.sky

11 May 2020 16:25:30,765 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 16:25:30,768 INFO : 5% Done

11 May 2020 16:25:30,923 INFO : Inserting ANXA2

11 May 2020 16:25:30,930 INFO : 13% Done

11 May 2020 16:25:31,004 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:31,004 INFO : Inserting CAMKK2

11 May 2020 16:25:31,007 INFO : 20% Done

11 May 2020 16:25:31,100 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:31,100 INFO : Inserting CCND1

11 May 2020 16:25:31,103 INFO : 27% Done

11 May 2020 16:25:31,201 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:31,201 INFO : Inserting EGFR

11 May 2020 16:25:31,204 INFO : 31% Done

11 May 2020 16:25:31,258 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:31,258 INFO : Inserting ERG_pan

11 May 2020 16:25:31,261 INFO : 37% Done

11 May 2020 16:25:31,329 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:31,330 INFO : Inserting FOLH1

11 May 2020 16:25:31,332 INFO : 40% Done

11 May 2020 16:25:31,399 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:31,399 INFO : Inserting MMP9

11 May 2020 16:25:31,401 INFO : 46% Done

11 May 2020 16:25:31,468 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:31,468 INFO : Inserting MUC1

11 May 2020 16:25:31,470 INFO : 50% Done

11 May 2020 16:25:31,521 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:31,522 INFO : Inserting NCOA2

11 May 2020 16:25:31,524 INFO : 56% Done

11 May 2020 16:25:31,590 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:31,590 INFO : Inserting PSA

11 May 2020 16:25:31,592 INFO : 63% Done

11 May 2020 16:25:31,671 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:31,672 INFO : Inserting SMAD4

11 May 2020 16:25:31,674 INFO : 67% Done

11 May 2020 16:25:31,748 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:31,749 INFO : 69% Done

11 May 2020 16:25:31,749 INFO : Inserting SPINK1

11 May 2020 16:25:31,751 INFO : 75% Done

11 May 2020 16:25:31,828 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:31,828 INFO : Inserting SPRC

11 May 2020 16:25:31,830 INFO : 81% Done

11 May 2020 16:25:31,900 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:31,900 INFO : Inserting TFF3

11 May 2020 16:25:31,902 INFO : 88% Done

11 May 2020 16:25:31,977 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:31,977 INFO : Inserting TGFB1

11 May 2020 16:25:31,979 INFO : 93% Done

11 May 2020 16:25:32,024 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:32,025 INFO : Inserting VEGFA

11 May 2020 16:25:32,027 INFO : 98% Done

11 May 2020 16:25:32,100 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:32,100 INFO : Done parsing Skyline document.

11 May 2020 16:25:32,102 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:25:32,128 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:25:32,177 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:25:32,196 INFO : Cleaning up temp tables

11 May 2020 16:25:32,622 INFO : Completed import of Skyline document from CPDR-FFPE-ID-701_2020-01-28_13-39-56.sky.zip

11 May 2020 16:25:32,623 INFO : 100% Done

11 May 2020 16:25:32,635 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80273/CPDR-FFPE-ID-701_2020-01-28_13-39-56.sky.zip into the system

11 May 2020 16:25:32,635 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80290/CPDR-FFPE-ID-606_2020-01-28_13-44-35/CPDR-FFPE-ID-606.skyd into the system

11 May 2020 16:25:32,636 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80290/CPDR-FFPE-ID-606_2020-01-28_13-44-35/CPDR-FFPE-ID-606.skyd into the system

11 May 2020 16:25:32,636 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80290/CPDR-FFPE-ID-606_2020-01-28_13-44-35.sky.zip into the system

11 May 2020 16:25:32,640 INFO : Starting import from CPDR-FFPE-ID-606_2020-01-28_13-44-35.sky.zip

11 May 2020 16:25:32,646 INFO : Starting to import Skyline document from CPDR-FFPE-ID-606_2020-01-28_13-44-35.sky.zip

11 May 2020 16:25:32,653 INFO : Expanding CPDR-FFPE-ID-606.skyd

11 May 2020 16:25:32,821 INFO : Expanding CPDR-FFPE-ID-606.sky.view

11 May 2020 16:25:32,822 INFO : Expanding CPDR-FFPE-ID-606.sky

11 May 2020 16:25:32,830 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:25:32,833 INFO : 6% Done

11 May 2020 16:25:32,972 INFO : Inserting ANXA2

11 May 2020 16:25:32,980 INFO : 15% Done

11 May 2020 16:25:33,100 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:33,100 INFO : Inserting CAMKK2

11 May 2020 16:25:33,103 INFO : 23% Done

11 May 2020 16:25:33,210 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:33,210 INFO : Inserting CCND1

11 May 2020 16:25:33,212 INFO : 27% Done

11 May 2020 16:25:33,283 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:33,283 INFO : Inserting EGFR

11 May 2020 16:25:33,286 INFO : 34% Done

11 May 2020 16:25:33,363 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:33,363 INFO : Inserting ERG_pan

11 May 2020 16:25:33,366 INFO : 42% Done

11 May 2020 16:25:33,478 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:33,479 INFO : Inserting FOLH1

11 May 2020 16:25:33,480 INFO : 46% Done

11 May 2020 16:25:33,534 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:33,534 INFO : Inserting MMP9

11 May 2020 16:25:33,537 INFO : 56% Done

11 May 2020 16:25:33,650 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:33,650 INFO : Inserting MUC1

11 May 2020 16:25:33,652 INFO : 60% Done

11 May 2020 16:25:33,713 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:33,713 INFO : 61% Done

11 May 2020 16:25:33,714 INFO : Inserting NCOA2

11 May 2020 16:25:33,716 INFO : 66% Done

11 May 2020 16:25:33,798 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:33,798 INFO : Inserting PSA

11 May 2020 16:25:33,800 INFO : 70% Done

11 May 2020 16:25:33,859 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:33,859 INFO : 72% Done

11 May 2020 16:25:33,859 INFO : Inserting SMAD4

11 May 2020 16:25:33,862 INFO : 76% Done

11 May 2020 16:25:33,938 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:33,939 INFO : Inserting SPINK1

11 May 2020 16:25:33,941 INFO : 80% Done

11 May 2020 16:25:33,991 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:33,991 INFO : Inserting SPRC

11 May 2020 16:25:33,993 INFO : 84% Done

11 May 2020 16:25:34,053 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:34,054 INFO : Inserting TFF3

11 May 2020 16:25:34,056 INFO : 90% Done

11 May 2020 16:25:34,117 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:34,118 INFO : Inserting TGFB1

11 May 2020 16:25:34,119 INFO : 91% Done

11 May 2020 16:25:34,148 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:34,148 INFO : Inserting VEGFA

11 May 2020 16:25:34,151 INFO : 98% Done

11 May 2020 16:25:34,255 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:34,255 INFO : Done parsing Skyline document.

11 May 2020 16:25:34,258 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:25:34,285 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:25:34,341 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:25:34,363 INFO : Cleaning up temp tables

11 May 2020 16:25:34,824 INFO : Completed import of Skyline document from CPDR-FFPE-ID-606_2020-01-28_13-44-35.sky.zip

11 May 2020 16:25:34,826 INFO : 100% Done

11 May 2020 16:25:34,838 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80290/CPDR-FFPE-ID-606_2020-01-28_13-44-35.sky.zip into the system

11 May 2020 16:25:34,838 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80292/CPDR-FFPE-ID-755_2020-01-28_13-44-57/CPDR-FFPE-ID-755.skyd into the system

11 May 2020 16:25:34,839 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80292/CPDR-FFPE-ID-755_2020-01-28_13-44-57/CPDR-FFPE-ID-755.skyd into the system

11 May 2020 16:25:34,839 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80292/CPDR-FFPE-ID-755_2020-01-28_13-44-57.sky.zip into the system

11 May 2020 16:25:34,844 INFO : Starting import from CPDR-FFPE-ID-755_2020-01-28_13-44-57.sky.zip

11 May 2020 16:25:34,852 INFO : Starting to import Skyline document from CPDR-FFPE-ID-755_2020-01-28_13-44-57.sky.zip

11 May 2020 16:25:34,859 INFO : Expanding CPDR-FFPE-ID-755.skyd

11 May 2020 16:25:35,035 INFO : Expanding CPDR-FFPE-ID-755.sky.view

11 May 2020 16:25:35,035 INFO : Expanding CPDR-FFPE-ID-755.sky

11 May 2020 16:25:35,043 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:25:35,046 INFO : 6% Done

11 May 2020 16:25:35,175 INFO : Inserting ANXA2

11 May 2020 16:25:35,183 INFO : 16% Done

11 May 2020 16:25:35,298 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:35,298 INFO : Inserting CAMKK2

11 May 2020 16:25:35,300 INFO : 23% Done

11 May 2020 16:25:35,402 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:35,403 INFO : Inserting CCND1

11 May 2020 16:25:35,405 INFO : 27% Done

11 May 2020 16:25:35,482 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:35,483 INFO : Inserting EGFR

11 May 2020 16:25:35,485 INFO : 35% Done

11 May 2020 16:25:35,569 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:35,569 INFO : Inserting ERG_pan

11 May 2020 16:25:35,572 INFO : 43% Done

11 May 2020 16:25:35,679 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:35,679 INFO : Inserting FOLH1

11 May 2020 16:25:35,681 INFO : 47% Done

11 May 2020 16:25:35,732 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:35,732 INFO : Inserting MMP9

11 May 2020 16:25:35,735 INFO : 56% Done

11 May 2020 16:25:35,836 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:35,836 INFO : Inserting MUC1

11 May 2020 16:25:35,838 INFO : 61% Done

11 May 2020 16:25:35,899 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:35,900 INFO : Inserting NCOA2

11 May 2020 16:25:35,902 INFO : 67% Done

11 May 2020 16:25:35,976 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:35,976 INFO : Inserting PSA

11 May 2020 16:25:35,978 INFO : 71% Done

11 May 2020 16:25:36,026 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:36,027 INFO : Inserting SMAD4

11 May 2020 16:25:36,029 INFO : 76% Done

11 May 2020 16:25:36,107 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:36,107 INFO : Inserting SPINK1

11 May 2020 16:25:36,110 INFO : 80% Done

11 May 2020 16:25:36,161 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:36,161 INFO : Inserting SPRC

11 May 2020 16:25:36,163 INFO : 85% Done

11 May 2020 16:25:36,227 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:36,227 INFO : Inserting TFF3

11 May 2020 16:25:36,229 INFO : 89% Done

11 May 2020 16:25:36,285 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:36,286 INFO : Inserting TGFB1

11 May 2020 16:25:36,287 INFO : 90% Done

11 May 2020 16:25:36,319 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:36,319 INFO : Inserting VEGFA

11 May 2020 16:25:36,321 INFO : 98% Done

11 May 2020 16:25:36,422 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:36,422 INFO : Done parsing Skyline document.

11 May 2020 16:25:36,424 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:25:36,453 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:25:36,506 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:25:36,527 INFO : Cleaning up temp tables

11 May 2020 16:25:37,019 INFO : Completed import of Skyline document from CPDR-FFPE-ID-755_2020-01-28_13-44-57.sky.zip

11 May 2020 16:25:37,021 INFO : 100% Done

11 May 2020 16:25:37,034 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80292/CPDR-FFPE-ID-755_2020-01-28_13-44-57.sky.zip into the system

11 May 2020 16:25:37,034 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80297/CPDR-FFPE-ID-590_2020-01-28_13-45-57/CPDR-FFPE-ID-590.skyd into the system

11 May 2020 16:25:37,036 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80297/CPDR-FFPE-ID-590_2020-01-28_13-45-57/CPDR-FFPE-ID-590.skyd into the system

11 May 2020 16:25:37,036 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80297/CPDR-FFPE-ID-590_2020-01-28_13-45-57.sky.zip into the system

11 May 2020 16:25:37,041 INFO : Starting import from CPDR-FFPE-ID-590_2020-01-28_13-45-57.sky.zip

11 May 2020 16:25:37,050 INFO : Starting to import Skyline document from CPDR-FFPE-ID-590_2020-01-28_13-45-57.sky.zip

11 May 2020 16:25:37,057 INFO : Expanding CPDR-FFPE-ID-590.skyd

11 May 2020 16:25:37,238 INFO : Expanding CPDR-FFPE-ID-590.sky.view

11 May 2020 16:25:37,238 INFO : Expanding CPDR-FFPE-ID-590.sky

11 May 2020 16:25:37,247 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:25:37,250 INFO : 6% Done

11 May 2020 16:25:37,374 INFO : Inserting ANXA2

11 May 2020 16:25:37,381 INFO : 15% Done

11 May 2020 16:25:37,479 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:37,479 INFO : Inserting CAMKK2

11 May 2020 16:25:37,483 INFO : 24% Done

11 May 2020 16:25:37,591 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:37,591 INFO : Inserting CCND1

11 May 2020 16:25:37,594 INFO : 29% Done

11 May 2020 16:25:37,662 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:37,662 INFO : Inserting EGFR

11 May 2020 16:25:37,665 INFO : 36% Done

11 May 2020 16:25:37,740 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:37,740 INFO : Inserting ERG_pan

11 May 2020 16:25:37,743 INFO : 42% Done

11 May 2020 16:25:37,823 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:37,823 INFO : Inserting FOLH1

11 May 2020 16:25:37,825 INFO : 47% Done

11 May 2020 16:25:37,872 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:37,873 INFO : Inserting MMP9

11 May 2020 16:25:37,875 INFO : 57% Done

11 May 2020 16:25:37,978 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:37,978 INFO : Inserting MUC1

11 May 2020 16:25:37,980 INFO : 62% Done

11 May 2020 16:25:38,040 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:38,040 INFO : Inserting NCOA2

11 May 2020 16:25:38,042 INFO : 69% Done

11 May 2020 16:25:38,118 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:38,118 INFO : Inserting PSA

11 May 2020 16:25:38,121 INFO : 73% Done

11 May 2020 16:25:38,169 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:38,170 INFO : Inserting SMAD4

11 May 2020 16:25:38,172 INFO : 77% Done

11 May 2020 16:25:38,231 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:38,232 INFO : Inserting SPINK1

11 May 2020 16:25:38,234 INFO : 80% Done

11 May 2020 16:25:38,274 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:38,274 INFO : Inserting SPRC

11 May 2020 16:25:38,276 INFO : 84% Done

11 May 2020 16:25:38,327 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:38,327 INFO : Inserting TFF3

11 May 2020 16:25:38,329 INFO : 89% Done

11 May 2020 16:25:38,377 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:38,377 INFO : Inserting TGFB1

11 May 2020 16:25:38,378 INFO : 90% Done

11 May 2020 16:25:38,404 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:38,404 INFO : Inserting VEGFA

11 May 2020 16:25:38,406 INFO : 98% Done

11 May 2020 16:25:38,505 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:38,505 INFO : Done parsing Skyline document.

11 May 2020 16:25:38,508 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:25:38,537 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:25:38,595 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:25:38,617 INFO : Cleaning up temp tables

11 May 2020 16:25:38,653 INFO : Completed import of Skyline document from CPDR-FFPE-ID-590_2020-01-28_13-45-57.sky.zip

11 May 2020 16:25:38,655 INFO : 100% Done

11 May 2020 16:25:38,669 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80297/CPDR-FFPE-ID-590_2020-01-28_13-45-57.sky.zip into the system

11 May 2020 16:25:38,669 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80207/CPDR-FFPE-ID-463_2020-01-28_11-20-24/CPDR-FFPE-ID-463.skyd into the system

11 May 2020 16:25:38,670 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80207/CPDR-FFPE-ID-463_2020-01-28_11-20-24/CPDR-FFPE-ID-463.skyd into the system

11 May 2020 16:25:38,670 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80207/CPDR-FFPE-ID-463_2020-01-28_11-20-24.sky.zip into the system

11 May 2020 16:25:38,675 INFO : Starting import from CPDR-FFPE-ID-463_2020-01-28_11-20-24.sky.zip

11 May 2020 16:25:38,684 INFO : Starting to import Skyline document from CPDR-FFPE-ID-463_2020-01-28_11-20-24.sky.zip

11 May 2020 16:25:38,692 INFO : Expanding CPDR-FFPE-ID-463.skyd

11 May 2020 16:25:38,896 INFO : Expanding CPDR-FFPE-ID-463.sky.view

11 May 2020 16:25:38,897 INFO : Expanding CPDR-FFPE-ID-463.sky

11 May 2020 16:25:38,906 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1

11 May 2020 16:25:38,910 INFO : 6% Done

11 May 2020 16:25:39,129 INFO : Inserting ANXA2

11 May 2020 16:25:39,136 INFO : 15% Done

11 May 2020 16:25:39,217 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:39,218 INFO : Inserting CAMKK2

11 May 2020 16:25:39,220 INFO : 20% Done

11 May 2020 16:25:39,299 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:39,299 INFO : Inserting CCND1

11 May 2020 16:25:39,302 INFO : 25% Done

11 May 2020 16:25:39,380 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:39,381 INFO : 27% Done

11 May 2020 16:25:39,381 INFO : Inserting EGFR

11 May 2020 16:25:39,383 INFO : 31% Done

11 May 2020 16:25:39,451 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:39,451 INFO : Inserting ERG_pan

11 May 2020 16:25:39,454 INFO : 43% Done

11 May 2020 16:25:39,586 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:39,586 INFO : Inserting FOLH1

11 May 2020 16:25:39,589 INFO : 47% Done

11 May 2020 16:25:39,645 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:39,645 INFO : Inserting MMP9

11 May 2020 16:25:39,648 INFO : 59% Done

11 May 2020 16:25:39,775 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:39,775 INFO : Inserting MUC1

11 May 2020 16:25:39,777 INFO : 63% Done

11 May 2020 16:25:39,837 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:39,837 INFO : Inserting NCOA2

11 May 2020 16:25:39,839 INFO : 66% Done

11 May 2020 16:25:39,879 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:39,880 INFO : Inserting PSA

11 May 2020 16:25:39,882 INFO : 72% Done

11 May 2020 16:25:39,950 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:39,950 INFO : Inserting SMAD4

11 May 2020 16:25:39,952 INFO : 75% Done

11 May 2020 16:25:40,015 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:40,015 INFO : Inserting SPINK1

11 May 2020 16:25:40,017 INFO : 81% Done

11 May 2020 16:25:40,081 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:40,081 INFO : Inserting SPRC

11 May 2020 16:25:40,083 INFO : 84% Done

11 May 2020 16:25:40,131 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:40,131 INFO : Inserting TFF3

11 May 2020 16:25:40,133 INFO : 91% Done

11 May 2020 16:25:40,204 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:40,204 INFO : Inserting TGFB1

11 May 2020 16:25:40,206 INFO : 93% Done

11 May 2020 16:25:40,243 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:40,244 INFO : Inserting VEGFA

11 May 2020 16:25:40,247 INFO : 98% Done

11 May 2020 16:25:40,325 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:40,325 INFO : Done parsing Skyline document.

11 May 2020 16:25:40,327 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:25:40,354 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:25:40,400 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:25:40,419 INFO : Cleaning up temp tables

11 May 2020 16:25:40,939 INFO : Completed import of Skyline document from CPDR-FFPE-ID-463_2020-01-28_11-20-24.sky.zip

11 May 2020 16:25:40,940 INFO : 100% Done

11 May 2020 16:25:40,953 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80207/CPDR-FFPE-ID-463_2020-01-28_11-20-24.sky.zip into the system

11 May 2020 16:25:40,953 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80213/CPDR-FFPE-ID-406_2020-01-28_11-22-02/CPDR-FFPE-ID-406.skyd into the system

11 May 2020 16:25:40,955 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80213/CPDR-FFPE-ID-406_2020-01-28_11-22-02/CPDR-FFPE-ID-406.skyd into the system

11 May 2020 16:25:40,955 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80213/CPDR-FFPE-ID-406_2020-01-28_11-22-02.sky.zip into the system

11 May 2020 16:25:40,961 INFO : Starting import from CPDR-FFPE-ID-406_2020-01-28_11-22-02.sky.zip

11 May 2020 16:25:40,970 INFO : Starting to import Skyline document from CPDR-FFPE-ID-406_2020-01-28_11-22-02.sky.zip

11 May 2020 16:25:40,983 INFO : Expanding CPDR-FFPE-ID-406.skyd

11 May 2020 16:25:41,306 INFO : Expanding CPDR-FFPE-ID-406.sky.view

11 May 2020 16:25:41,307 INFO : Expanding CPDR-FFPE-ID-406.sky

11 May 2020 16:25:41,316 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1

11 May 2020 16:25:41,320 INFO : 6% Done

11 May 2020 16:25:41,536 INFO : 8% Done

11 May 2020 16:25:41,536 INFO : Inserting ANXA2

11 May 2020 16:25:41,544 INFO : 13% Done

11 May 2020 16:25:41,634 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:41,634 INFO : Inserting CAMKK2

11 May 2020 16:25:41,637 INFO : 20% Done

11 May 2020 16:25:41,731 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:41,732 INFO : Inserting CCND1

11 May 2020 16:25:41,735 INFO : 26% Done

11 May 2020 16:25:41,855 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:41,855 INFO : Inserting EGFR

11 May 2020 16:25:41,857 INFO : 31% Done

11 May 2020 16:25:41,930 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:41,930 INFO : Inserting ERG_pan

11 May 2020 16:25:41,933 INFO : 40% Done

11 May 2020 16:25:42,077 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:42,077 INFO : Inserting FOLH1

11 May 2020 16:25:42,079 INFO : 45% Done

11 May 2020 16:25:42,133 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:42,133 INFO : Inserting MMP9

11 May 2020 16:25:42,136 INFO : 54% Done

11 May 2020 16:25:42,274 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:42,274 INFO : Inserting MUC1

11 May 2020 16:25:42,276 INFO : 58% Done

11 May 2020 16:25:42,337 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:42,337 INFO : Inserting NCOA2

11 May 2020 16:25:42,339 INFO : 62% Done

11 May 2020 16:25:42,404 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:42,404 INFO : Inserting PSA

11 May 2020 16:25:42,406 INFO : 68% Done

11 May 2020 16:25:42,508 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:42,509 INFO : Inserting SMAD4

11 May 2020 16:25:42,511 INFO : 73% Done

11 May 2020 16:25:42,589 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:42,589 INFO : Inserting SPINK1

11 May 2020 16:25:42,592 INFO : 79% Done

11 May 2020 16:25:42,698 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:42,698 INFO : Inserting SPRC

11 May 2020 16:25:42,701 INFO : 83% Done

11 May 2020 16:25:42,776 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:42,777 INFO : Inserting TFF3

11 May 2020 16:25:42,779 INFO : 90% Done

11 May 2020 16:25:42,881 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:42,881 INFO : Inserting TGFB1

11 May 2020 16:25:42,883 INFO : 92% Done

11 May 2020 16:25:42,927 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:42,927 INFO : Inserting VEGFA

11 May 2020 16:25:42,930 INFO : 98% Done

11 May 2020 16:25:43,020 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:43,020 INFO : Done parsing Skyline document.

11 May 2020 16:25:43,022 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:25:43,053 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:25:43,125 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:25:43,157 INFO : Cleaning up temp tables

11 May 2020 16:25:43,653 INFO : Completed import of Skyline document from CPDR-FFPE-ID-406_2020-01-28_11-22-02.sky.zip

11 May 2020 16:25:43,655 INFO : 100% Done

11 May 2020 16:25:43,667 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80213/CPDR-FFPE-ID-406_2020-01-28_11-22-02.sky.zip into the system

11 May 2020 16:25:43,667 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80235/CPDR-FFPE-ID-642_2020-01-28_13-30-06/CPDR-FFPE-ID-642.skyd into the system

11 May 2020 16:25:43,668 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80235/CPDR-FFPE-ID-642_2020-01-28_13-30-06/CPDR-FFPE-ID-642.skyd into the system

11 May 2020 16:25:43,668 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80235/CPDR-FFPE-ID-642_2020-01-28_13-30-06.sky.zip into the system

11 May 2020 16:25:43,672 INFO : Starting import from CPDR-FFPE-ID-642_2020-01-28_13-30-06.sky.zip

11 May 2020 16:25:43,679 INFO : Starting to import Skyline document from CPDR-FFPE-ID-642_2020-01-28_13-30-06.sky.zip

11 May 2020 16:25:43,687 INFO : Expanding CPDR-FFPE-ID-642.skyd

11 May 2020 16:25:43,878 INFO : Expanding CPDR-FFPE-ID-642.sky.view

11 May 2020 16:25:43,879 INFO : Expanding CPDR-FFPE-ID-642.sky

11 May 2020 16:25:43,886 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:25:43,889 INFO : 6% Done

11 May 2020 16:25:44,030 INFO : Inserting ANXA2

11 May 2020 16:25:44,037 INFO : 13% Done

11 May 2020 16:25:44,119 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:44,119 INFO : 14% Done

11 May 2020 16:25:44,119 INFO : Inserting CAMKK2

11 May 2020 16:25:44,122 INFO : 20% Done

11 May 2020 16:25:44,206 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:44,206 INFO : Inserting CCND1

11 May 2020 16:25:44,209 INFO : 27% Done

11 May 2020 16:25:44,305 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:44,306 INFO : Inserting EGFR

11 May 2020 16:25:44,308 INFO : 31% Done

11 May 2020 16:25:44,366 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:44,366 INFO : Inserting ERG_pan

11 May 2020 16:25:44,369 INFO : 40% Done

11 May 2020 16:25:44,456 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:44,456 INFO : Inserting FOLH1

11 May 2020 16:25:44,458 INFO : 44% Done

11 May 2020 16:25:44,507 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:44,507 INFO : Inserting MMP9

11 May 2020 16:25:44,509 INFO : 51% Done

11 May 2020 16:25:44,600 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:44,600 INFO : 52% Done

11 May 2020 16:25:44,600 INFO : Inserting MUC1

11 May 2020 16:25:44,602 INFO : 57% Done

11 May 2020 16:25:44,661 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:44,661 INFO : Inserting NCOA2

11 May 2020 16:25:44,663 INFO : 61% Done

11 May 2020 16:25:44,721 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:44,721 INFO : Inserting PSA

11 May 2020 16:25:44,723 INFO : 67% Done

11 May 2020 16:25:44,795 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:44,795 INFO : 68% Done

11 May 2020 16:25:44,795 INFO : Inserting SMAD4

11 May 2020 16:25:44,797 INFO : 72% Done

11 May 2020 16:25:44,847 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:44,847 INFO : Inserting SPINK1

11 May 2020 16:25:44,850 INFO : 77% Done

11 May 2020 16:25:44,928 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:44,928 INFO : Inserting SPRC

11 May 2020 16:25:44,930 INFO : 82% Done

11 May 2020 16:25:44,993 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:44,993 INFO : 84% Done

11 May 2020 16:25:44,993 INFO : Inserting TFF3

11 May 2020 16:25:44,995 INFO : 89% Done

11 May 2020 16:25:45,067 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:45,067 INFO : Inserting TGFB1

11 May 2020 16:25:45,069 INFO : 92% Done

11 May 2020 16:25:45,100 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:45,100 INFO : Inserting VEGFA

11 May 2020 16:25:45,103 INFO : 98% Done

11 May 2020 16:25:45,172 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:45,172 INFO : Done parsing Skyline document.

11 May 2020 16:25:45,174 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:25:45,201 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:25:45,251 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:25:45,270 INFO : Cleaning up temp tables

11 May 2020 16:25:45,858 INFO : Completed import of Skyline document from CPDR-FFPE-ID-642_2020-01-28_13-30-06.sky.zip

11 May 2020 16:25:45,859 INFO : 100% Done

11 May 2020 16:25:45,872 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80235/CPDR-FFPE-ID-642_2020-01-28_13-30-06.sky.zip into the system

11 May 2020 16:25:45,873 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80238/CPDR-FFPE-ID-628_2020-01-28_13-30-49/CPDR-FFPE-ID-628.skyd into the system

11 May 2020 16:25:45,874 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80238/CPDR-FFPE-ID-628_2020-01-28_13-30-49/CPDR-FFPE-ID-628.skyd into the system

11 May 2020 16:25:45,874 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80238/CPDR-FFPE-ID-628_2020-01-28_13-30-49.sky.zip into the system

11 May 2020 16:25:45,878 INFO : Starting import from CPDR-FFPE-ID-628_2020-01-28_13-30-49.sky.zip

11 May 2020 16:25:45,885 INFO : Starting to import Skyline document from CPDR-FFPE-ID-628_2020-01-28_13-30-49.sky.zip

11 May 2020 16:25:45,892 INFO : Expanding CPDR-FFPE-ID-628.skyd

11 May 2020 16:25:46,016 INFO : Expanding CPDR-FFPE-ID-628.sky.view

11 May 2020 16:25:46,016 INFO : Expanding CPDR-FFPE-ID-628.sky

11 May 2020 16:25:46,024 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:25:46,027 INFO : 6% Done

11 May 2020 16:25:46,144 INFO : Inserting ANXA2

11 May 2020 16:25:46,151 INFO : 13% Done

11 May 2020 16:25:46,206 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:46,206 INFO : Inserting CAMKK2

11 May 2020 16:25:46,209 INFO : 19% Done

11 May 2020 16:25:46,259 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:46,259 INFO : Inserting CCND1

11 May 2020 16:25:46,261 INFO : 28% Done

11 May 2020 16:25:46,341 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:46,341 INFO : Inserting EGFR

11 May 2020 16:25:46,343 INFO : 31% Done

11 May 2020 16:25:46,383 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:46,383 INFO : Inserting ERG_pan

11 May 2020 16:25:46,385 INFO : 39% Done

11 May 2020 16:25:46,449 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:46,449 INFO : Inserting FOLH1

11 May 2020 16:25:46,451 INFO : 43% Done

11 May 2020 16:25:46,489 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:46,489 INFO : Inserting MMP9

11 May 2020 16:25:46,491 INFO : 50% Done

11 May 2020 16:25:46,554 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:46,554 INFO : Inserting MUC1

11 May 2020 16:25:46,556 INFO : 54% Done

11 May 2020 16:25:46,596 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:46,596 INFO : Inserting NCOA2

11 May 2020 16:25:46,598 INFO : 60% Done

11 May 2020 16:25:46,642 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:46,642 INFO : Inserting PSA

11 May 2020 16:25:46,644 INFO : 68% Done

11 May 2020 16:25:46,707 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:46,707 INFO : Inserting SMAD4

11 May 2020 16:25:46,709 INFO : 71% Done

11 May 2020 16:25:46,745 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:46,745 INFO : Inserting SPINK1

11 May 2020 16:25:46,747 INFO : 76% Done

11 May 2020 16:25:46,808 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:46,808 INFO : Inserting SPRC

11 May 2020 16:25:46,810 INFO : 82% Done

11 May 2020 16:25:46,856 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:46,856 INFO : Inserting TFF3

11 May 2020 16:25:46,858 INFO : 89% Done

11 May 2020 16:25:46,925 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:46,925 INFO : Inserting TGFB1

11 May 2020 16:25:46,927 INFO : 93% Done

11 May 2020 16:25:46,960 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:46,960 INFO : Inserting VEGFA

11 May 2020 16:25:46,961 INFO : 98% Done

11 May 2020 16:25:47,008 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:47,008 INFO : Done parsing Skyline document.

11 May 2020 16:25:47,010 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:25:47,035 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:25:47,077 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:25:47,093 INFO : Cleaning up temp tables

11 May 2020 16:25:47,572 INFO : Completed import of Skyline document from CPDR-FFPE-ID-628_2020-01-28_13-30-49.sky.zip

11 May 2020 16:25:47,573 INFO : 100% Done

11 May 2020 16:25:47,585 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80238/CPDR-FFPE-ID-628_2020-01-28_13-30-49.sky.zip into the system

11 May 2020 16:25:47,586 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80243/CPDR-FFPE-ID-554_2020-01-28_13-31-43/CPDR-FFPE-ID-554.skyd into the system

11 May 2020 16:25:47,587 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80243/CPDR-FFPE-ID-554_2020-01-28_13-31-43/CPDR-FFPE-ID-554.skyd into the system

11 May 2020 16:25:47,587 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80243/CPDR-FFPE-ID-554_2020-01-28_13-31-43.sky.zip into the system

11 May 2020 16:25:47,592 INFO : Starting import from CPDR-FFPE-ID-554_2020-01-28_13-31-43.sky.zip

11 May 2020 16:25:47,649 INFO : Starting to import Skyline document from CPDR-FFPE-ID-554_2020-01-28_13-31-43.sky.zip

11 May 2020 16:25:47,655 INFO : Expanding CPDR-FFPE-ID-554.skyd

11 May 2020 16:25:47,779 INFO : Expanding CPDR-FFPE-ID-554.sky.view

11 May 2020 16:25:47,780 INFO : Expanding CPDR-FFPE-ID-554.sky

11 May 2020 16:25:47,787 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:25:47,790 INFO : 6% Done

11 May 2020 16:25:47,891 INFO : Inserting ANXA2

11 May 2020 16:25:47,898 INFO : 14% Done

11 May 2020 16:25:47,949 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:47,950 INFO : Inserting CAMKK2

11 May 2020 16:25:47,952 INFO : 19% Done

11 May 2020 16:25:48,001 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:48,001 INFO : Inserting CCND1

11 May 2020 16:25:48,004 INFO : 28% Done

11 May 2020 16:25:48,074 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:48,074 INFO : Inserting EGFR

11 May 2020 16:25:48,076 INFO : 32% Done

11 May 2020 16:25:48,112 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:48,112 INFO : Inserting ERG_pan

11 May 2020 16:25:48,114 INFO : 38% Done

11 May 2020 16:25:48,171 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:48,172 INFO : Inserting FOLH1

11 May 2020 16:25:48,174 INFO : 43% Done

11 May 2020 16:25:48,219 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:48,219 INFO : Inserting MMP9

11 May 2020 16:25:48,222 INFO : 49% Done

11 May 2020 16:25:48,291 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:48,291 INFO : Inserting MUC1

11 May 2020 16:25:48,293 INFO : 55% Done

11 May 2020 16:25:48,332 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:48,332 INFO : Inserting NCOA2

11 May 2020 16:25:48,334 INFO : 59% Done

11 May 2020 16:25:48,377 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:48,377 INFO : Inserting PSA

11 May 2020 16:25:48,380 INFO : 67% Done

11 May 2020 16:25:48,438 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:48,438 INFO : Inserting SMAD4

11 May 2020 16:25:48,440 INFO : 71% Done

11 May 2020 16:25:48,477 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:48,477 INFO : Inserting SPINK1

11 May 2020 16:25:48,479 INFO : 77% Done

11 May 2020 16:25:48,543 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:48,544 INFO : Inserting SPRC

11 May 2020 16:25:48,546 INFO : 81% Done

11 May 2020 16:25:48,595 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:48,595 INFO : Inserting TFF3

11 May 2020 16:25:48,597 INFO : 89% Done

11 May 2020 16:25:48,668 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:48,668 INFO : Inserting TGFB1

11 May 2020 16:25:48,670 INFO : 93% Done

11 May 2020 16:25:48,703 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:48,703 INFO : Inserting VEGFA

11 May 2020 16:25:48,705 INFO : 98% Done

11 May 2020 16:25:48,755 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:48,755 INFO : Done parsing Skyline document.

11 May 2020 16:25:48,757 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:25:48,784 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:25:48,825 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:25:48,842 INFO : Cleaning up temp tables

11 May 2020 16:25:49,321 INFO : Completed import of Skyline document from CPDR-FFPE-ID-554_2020-01-28_13-31-43.sky.zip

11 May 2020 16:25:49,322 INFO : 100% Done

11 May 2020 16:25:49,335 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80243/CPDR-FFPE-ID-554_2020-01-28_13-31-43.sky.zip into the system

11 May 2020 16:25:49,336 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80249/CPDR-FFPE-ID-490_2020-01-28_13-32-52/CPDR-FFPE-ID-490.skyd into the system

11 May 2020 16:25:49,337 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80249/CPDR-FFPE-ID-490_2020-01-28_13-32-52/CPDR-FFPE-ID-490.skyd into the system

11 May 2020 16:25:49,337 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80249/CPDR-FFPE-ID-490_2020-01-28_13-32-52.sky.zip into the system

11 May 2020 16:25:49,341 INFO : Starting import from CPDR-FFPE-ID-490_2020-01-28_13-32-52.sky.zip

11 May 2020 16:25:49,348 INFO : Starting to import Skyline document from CPDR-FFPE-ID-490_2020-01-28_13-32-52.sky.zip

11 May 2020 16:25:49,355 INFO : Expanding CPDR-FFPE-ID-490.skyd

11 May 2020 16:25:49,495 INFO : Expanding CPDR-FFPE-ID-490.sky.view

11 May 2020 16:25:49,496 INFO : Expanding CPDR-FFPE-ID-490.sky

11 May 2020 16:25:49,503 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:25:49,505 INFO : 6% Done

11 May 2020 16:25:49,622 INFO : Inserting ANXA2

11 May 2020 16:25:49,630 INFO : 14% Done

11 May 2020 16:25:49,690 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:49,690 INFO : Inserting CAMKK2

11 May 2020 16:25:49,692 INFO : 20% Done

11 May 2020 16:25:49,762 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:49,762 INFO : Inserting CCND1

11 May 2020 16:25:49,764 INFO : 28% Done

11 May 2020 16:25:49,850 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:49,850 INFO : Inserting EGFR

11 May 2020 16:25:49,852 INFO : 31% Done

11 May 2020 16:25:49,903 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:49,903 INFO : Inserting ERG_pan

11 May 2020 16:25:49,905 INFO : 38% Done

11 May 2020 16:25:49,980 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:49,980 INFO : Inserting FOLH1

11 May 2020 16:25:49,982 INFO : 42% Done

11 May 2020 16:25:50,029 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:50,029 INFO : Inserting MMP9

11 May 2020 16:25:50,032 INFO : 51% Done

11 May 2020 16:25:50,114 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:50,114 INFO : Inserting MUC1

11 May 2020 16:25:50,117 INFO : 56% Done

11 May 2020 16:25:50,161 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:50,161 INFO : Inserting NCOA2

11 May 2020 16:25:50,163 INFO : 60% Done

11 May 2020 16:25:50,204 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:50,204 INFO : Inserting PSA

11 May 2020 16:25:50,206 INFO : 67% Done

11 May 2020 16:25:50,273 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:50,273 INFO : Inserting SMAD4

11 May 2020 16:25:50,276 INFO : 71% Done

11 May 2020 16:25:50,323 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:50,324 INFO : 72% Done

11 May 2020 16:25:50,324 INFO : Inserting SPINK1

11 May 2020 16:25:50,326 INFO : 77% Done

11 May 2020 16:25:50,388 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:50,388 INFO : Inserting SPRC

11 May 2020 16:25:50,390 INFO : 82% Done

11 May 2020 16:25:50,437 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:50,437 INFO : Inserting TFF3

11 May 2020 16:25:50,440 INFO : 89% Done

11 May 2020 16:25:50,514 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:50,514 INFO : Inserting TGFB1

11 May 2020 16:25:50,516 INFO : 93% Done

11 May 2020 16:25:50,555 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:50,556 INFO : Inserting VEGFA

11 May 2020 16:25:50,558 INFO : 98% Done

11 May 2020 16:25:50,628 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:50,629 INFO : Done parsing Skyline document.

11 May 2020 16:25:50,631 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:25:50,659 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:25:50,706 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:25:50,779 INFO : Cleaning up temp tables

11 May 2020 16:25:51,274 INFO : Completed import of Skyline document from CPDR-FFPE-ID-490_2020-01-28_13-32-52.sky.zip

11 May 2020 16:25:51,276 INFO : 100% Done

11 May 2020 16:25:51,289 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80249/CPDR-FFPE-ID-490_2020-01-28_13-32-52.sky.zip into the system

11 May 2020 16:25:51,289 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80253/CPDR-FFPE-ID-563_2020-01-28_13-33-43/CPDR-FFPE-ID-563.skyd into the system

11 May 2020 16:25:51,290 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80253/CPDR-FFPE-ID-563_2020-01-28_13-33-43/CPDR-FFPE-ID-563.skyd into the system

11 May 2020 16:25:51,290 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80253/CPDR-FFPE-ID-563_2020-01-28_13-33-43.sky.zip into the system

11 May 2020 16:25:51,294 INFO : Starting import from CPDR-FFPE-ID-563_2020-01-28_13-33-43.sky.zip

11 May 2020 16:25:51,301 INFO : Starting to import Skyline document from CPDR-FFPE-ID-563_2020-01-28_13-33-43.sky.zip

11 May 2020 16:25:51,310 INFO : Expanding CPDR-FFPE-ID-563.skyd

11 May 2020 16:25:51,528 INFO : Expanding CPDR-FFPE-ID-563.sky.view

11 May 2020 16:25:51,529 INFO : Expanding CPDR-FFPE-ID-563.sky

11 May 2020 16:25:51,538 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:25:51,541 INFO : 5% Done

11 May 2020 16:25:51,707 INFO : Inserting ANXA2

11 May 2020 16:25:51,715 INFO : 14% Done

11 May 2020 16:25:51,836 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:51,836 INFO : 15% Done

11 May 2020 16:25:51,836 INFO : Inserting CAMKK2

11 May 2020 16:25:51,839 INFO : 22% Done

11 May 2020 16:25:51,954 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:51,954 INFO : Inserting CCND1

11 May 2020 16:25:51,959 INFO : 29% Done

11 May 2020 16:25:52,079 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:52,079 INFO : Inserting EGFR

11 May 2020 16:25:52,082 INFO : 34% Done

11 May 2020 16:25:52,162 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:52,162 INFO : Inserting ERG_pan

11 May 2020 16:25:52,165 INFO : 39% Done

11 May 2020 16:25:52,246 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:52,246 INFO : Inserting FOLH1

11 May 2020 16:25:52,248 INFO : 42% Done

11 May 2020 16:25:52,299 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:52,299 INFO : Inserting MMP9

11 May 2020 16:25:52,301 INFO : 48% Done

11 May 2020 16:25:52,376 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:52,376 INFO : Inserting MUC1

11 May 2020 16:25:52,378 INFO : 53% Done

11 May 2020 16:25:52,442 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:52,442 INFO : Inserting NCOA2

11 May 2020 16:25:52,445 INFO : 59% Done

11 May 2020 16:25:52,540 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:52,541 INFO : Inserting PSA

11 May 2020 16:25:52,543 INFO : 65% Done

11 May 2020 16:25:52,645 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:52,646 INFO : Inserting SMAD4

11 May 2020 16:25:52,648 INFO : 70% Done

11 May 2020 16:25:52,755 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:52,756 INFO : Inserting SPINK1

11 May 2020 16:25:52,760 INFO : 75% Done

11 May 2020 16:25:52,878 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:52,879 INFO : 76% Done

11 May 2020 16:25:52,879 INFO : Inserting SPRC

11 May 2020 16:25:52,882 INFO : 82% Done

11 May 2020 16:25:52,993 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:52,993 INFO : Inserting TFF3

11 May 2020 16:25:52,997 INFO : 88% Done

11 May 2020 16:25:53,147 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:53,147 INFO : Inserting TGFB1

11 May 2020 16:25:53,151 INFO : 90% Done

11 May 2020 16:25:53,217 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:53,217 INFO : Inserting VEGFA

11 May 2020 16:25:53,221 INFO : 98% Done

11 May 2020 16:25:53,342 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:53,342 INFO : Done parsing Skyline document.

11 May 2020 16:25:53,345 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:25:53,375 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:25:53,440 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:25:53,487 INFO : Cleaning up temp tables

11 May 2020 16:25:53,934 INFO : Completed import of Skyline document from CPDR-FFPE-ID-563_2020-01-28_13-33-43.sky.zip

11 May 2020 16:25:53,936 INFO : 100% Done

11 May 2020 16:25:53,947 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80253/CPDR-FFPE-ID-563_2020-01-28_13-33-43.sky.zip into the system

11 May 2020 16:25:53,947 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80254/CPDR-FFPE-ID-537_2020-01-28_13-33-56/CPDR-FFPE-ID-537.skyd into the system

11 May 2020 16:25:53,949 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80254/CPDR-FFPE-ID-537_2020-01-28_13-33-56/CPDR-FFPE-ID-537.skyd into the system

11 May 2020 16:25:53,949 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80254/CPDR-FFPE-ID-537_2020-01-28_13-33-56.sky.zip into the system

11 May 2020 16:25:53,952 INFO : Starting import from CPDR-FFPE-ID-537_2020-01-28_13-33-56.sky.zip

11 May 2020 16:25:53,959 INFO : Starting to import Skyline document from CPDR-FFPE-ID-537_2020-01-28_13-33-56.sky.zip

11 May 2020 16:25:53,970 INFO : Expanding CPDR-FFPE-ID-537.skyd

11 May 2020 16:25:54,281 INFO : Expanding CPDR-FFPE-ID-537.sky.view

11 May 2020 16:25:54,281 INFO : Expanding CPDR-FFPE-ID-537.sky

11 May 2020 16:25:54,292 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:25:54,295 INFO : 6% Done

11 May 2020 16:25:54,518 INFO : Inserting ANXA2

11 May 2020 16:25:54,528 INFO : 15% Done

11 May 2020 16:25:54,778 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:54,778 INFO : Inserting CAMKK2

11 May 2020 16:25:54,782 INFO : 23% Done

11 May 2020 16:25:54,954 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:54,954 INFO : Inserting CCND1

11 May 2020 16:25:54,958 INFO : 31% Done

11 May 2020 16:25:55,121 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:55,121 INFO : Inserting EGFR

11 May 2020 16:25:55,124 INFO : 33% Done

11 May 2020 16:25:55,192 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:55,192 INFO : 34% Done

11 May 2020 16:25:55,192 INFO : Inserting ERG_pan

11 May 2020 16:25:55,196 INFO : 38% Done

11 May 2020 16:25:55,299 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:55,299 INFO : Inserting FOLH1

11 May 2020 16:25:55,301 INFO : 41% Done

11 May 2020 16:25:55,352 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:55,353 INFO : Inserting MMP9

11 May 2020 16:25:55,355 INFO : 45% Done

11 May 2020 16:25:55,441 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:55,442 INFO : Inserting MUC1

11 May 2020 16:25:55,444 INFO : 48% Done

11 May 2020 16:25:55,512 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:55,512 INFO : Inserting NCOA2

11 May 2020 16:25:55,515 INFO : 55% Done

11 May 2020 16:25:55,647 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:55,647 INFO : Inserting PSA

11 May 2020 16:25:55,650 INFO : 63% Done

11 May 2020 16:25:55,797 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:55,797 INFO : Inserting SMAD4

11 May 2020 16:25:55,802 INFO : 69% Done

11 May 2020 16:25:55,928 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:55,929 INFO : Inserting SPINK1

11 May 2020 16:25:55,934 INFO : 75% Done

11 May 2020 16:25:56,106 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:56,106 INFO : Inserting SPRC

11 May 2020 16:25:56,111 INFO : 82% Done

11 May 2020 16:25:56,259 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:56,259 INFO : 83% Done

11 May 2020 16:25:56,259 INFO : Inserting TFF3

11 May 2020 16:25:56,264 INFO : 88% Done

11 May 2020 16:25:56,392 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:56,392 INFO : Inserting TGFB1

11 May 2020 16:25:56,394 INFO : 91% Done

11 May 2020 16:25:56,448 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:56,448 INFO : Inserting VEGFA

11 May 2020 16:25:56,451 INFO : 98% Done

11 May 2020 16:25:56,619 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:56,619 INFO : Done parsing Skyline document.

11 May 2020 16:25:56,621 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:25:56,657 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:25:56,758 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:25:56,796 INFO : Cleaning up temp tables

11 May 2020 16:25:57,270 INFO : Completed import of Skyline document from CPDR-FFPE-ID-537_2020-01-28_13-33-56.sky.zip

11 May 2020 16:25:57,272 INFO : 100% Done

11 May 2020 16:25:57,283 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80254/CPDR-FFPE-ID-537_2020-01-28_13-33-56.sky.zip into the system

11 May 2020 16:25:57,284 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80255/CPDR-FFPE-ID-504_2020-01-28_13-34-11/CPDR-FFPE-ID-504.skyd into the system

11 May 2020 16:25:57,285 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80255/CPDR-FFPE-ID-504_2020-01-28_13-34-11/CPDR-FFPE-ID-504.skyd into the system

11 May 2020 16:25:57,285 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80255/CPDR-FFPE-ID-504_2020-01-28_13-34-11.sky.zip into the system

11 May 2020 16:25:57,288 INFO : Starting import from CPDR-FFPE-ID-504_2020-01-28_13-34-11.sky.zip

11 May 2020 16:25:57,295 INFO : Starting to import Skyline document from CPDR-FFPE-ID-504_2020-01-28_13-34-11.sky.zip

11 May 2020 16:25:57,302 INFO : Expanding CPDR-FFPE-ID-504.skyd

11 May 2020 16:25:57,490 INFO : Expanding CPDR-FFPE-ID-504.sky.view

11 May 2020 16:25:57,491 INFO : Expanding CPDR-FFPE-ID-504.sky

11 May 2020 16:25:57,499 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:25:57,502 INFO : 6% Done

11 May 2020 16:25:57,653 INFO : Inserting ANXA2

11 May 2020 16:25:57,661 INFO : 13% Done

11 May 2020 16:25:57,755 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:57,755 INFO : Inserting CAMKK2

11 May 2020 16:25:57,757 INFO : 20% Done

11 May 2020 16:25:57,836 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:57,836 INFO : Inserting CCND1

11 May 2020 16:25:57,839 INFO : 27% Done

11 May 2020 16:25:57,943 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:57,943 INFO : Inserting EGFR

11 May 2020 16:25:57,945 INFO : 31% Done

11 May 2020 16:25:57,994 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:57,994 INFO : Inserting ERG_pan

11 May 2020 16:25:57,996 INFO : 36% Done

11 May 2020 16:25:58,050 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:58,050 INFO : Inserting FOLH1

11 May 2020 16:25:58,052 INFO : 39% Done

11 May 2020 16:25:58,092 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:58,092 INFO : Inserting MMP9

11 May 2020 16:25:58,094 INFO : 44% Done

11 May 2020 16:25:58,156 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:58,156 INFO : Inserting MUC1

11 May 2020 16:25:58,158 INFO : 48% Done

11 May 2020 16:25:58,202 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:58,202 INFO : Inserting NCOA2

11 May 2020 16:25:58,205 INFO : 54% Done

11 May 2020 16:25:58,284 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:58,284 INFO : Inserting PSA

11 May 2020 16:25:58,287 INFO : 62% Done

11 May 2020 16:25:58,373 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:58,373 INFO : Inserting SMAD4

11 May 2020 16:25:58,375 INFO : 66% Done

11 May 2020 16:25:58,439 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:58,439 INFO : 68% Done

11 May 2020 16:25:58,439 INFO : Inserting SPINK1

11 May 2020 16:25:58,442 INFO : 74% Done

11 May 2020 16:25:58,523 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:58,524 INFO : Inserting SPRC

11 May 2020 16:25:58,526 INFO : 80% Done

11 May 2020 16:25:58,620 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:58,620 INFO : 81% Done

11 May 2020 16:25:58,620 INFO : Inserting TFF3

11 May 2020 16:25:58,623 INFO : 88% Done

11 May 2020 16:25:58,708 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:58,708 INFO : Inserting TGFB1

11 May 2020 16:25:58,711 INFO : 92% Done

11 May 2020 16:25:58,777 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:58,777 INFO : 93% Done

11 May 2020 16:25:58,777 INFO : Inserting VEGFA

11 May 2020 16:25:58,780 INFO : 98% Done

11 May 2020 16:25:58,857 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:58,857 INFO : Done parsing Skyline document.

11 May 2020 16:25:58,860 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:25:58,888 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:25:58,947 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:25:58,969 INFO : Cleaning up temp tables

11 May 2020 16:25:58,985 INFO : Completed import of Skyline document from CPDR-FFPE-ID-504_2020-01-28_13-34-11.sky.zip

11 May 2020 16:25:58,986 INFO : 100% Done

11 May 2020 16:25:58,997 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80255/CPDR-FFPE-ID-504_2020-01-28_13-34-11.sky.zip into the system

11 May 2020 16:25:58,997 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80267/CPDR-FFPE-ID-711_2020-01-28_13-36-44/CPDR-FFPE-ID-711.skyd into the system

11 May 2020 16:25:59,000 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80267/CPDR-FFPE-ID-711_2020-01-28_13-36-44/CPDR-FFPE-ID-711.skyd into the system

11 May 2020 16:25:59,000 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80267/CPDR-FFPE-ID-711_2020-01-28_13-36-44.sky.zip into the system

11 May 2020 16:25:59,005 INFO : Starting import from CPDR-FFPE-ID-711_2020-01-28_13-36-44.sky.zip

11 May 2020 16:25:59,013 INFO : Starting to import Skyline document from CPDR-FFPE-ID-711_2020-01-28_13-36-44.sky.zip

11 May 2020 16:25:59,021 INFO : Expanding CPDR-FFPE-ID-711.skyd

11 May 2020 16:25:59,247 INFO : Expanding CPDR-FFPE-ID-711.sky.view

11 May 2020 16:25:59,248 INFO : Expanding CPDR-FFPE-ID-711.sky

11 May 2020 16:25:59,257 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:25:59,260 INFO : 6% Done

11 May 2020 16:25:59,437 INFO : Inserting ANXA2

11 May 2020 16:25:59,445 INFO : 13% Done

11 May 2020 16:25:59,540 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:59,540 INFO : Inserting CAMKK2

11 May 2020 16:25:59,543 INFO : 19% Done

11 May 2020 16:25:59,615 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:59,615 INFO : Inserting CCND1

11 May 2020 16:25:59,618 INFO : 27% Done

11 May 2020 16:25:59,707 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:59,707 INFO : Inserting EGFR

11 May 2020 16:25:59,709 INFO : 33% Done

11 May 2020 16:25:59,807 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:59,807 INFO : Inserting ERG_pan

11 May 2020 16:25:59,809 INFO : 37% Done

11 May 2020 16:25:59,867 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:59,867 INFO : Inserting FOLH1

11 May 2020 16:25:59,869 INFO : 41% Done

11 May 2020 16:25:59,910 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:59,910 INFO : Inserting MMP9

11 May 2020 16:25:59,912 INFO : 47% Done

11 May 2020 16:25:59,992 DEBUG: Total peptides inserted: 1

11 May 2020 16:25:59,992 INFO : Inserting MUC1

11 May 2020 16:25:59,994 INFO : 52% Done

11 May 2020 16:26:00,068 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:00,069 INFO : 53% Done

11 May 2020 16:26:00,069 INFO : Inserting NCOA2

11 May 2020 16:26:00,071 INFO : 58% Done

11 May 2020 16:26:00,152 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:00,153 INFO : Inserting PSA

11 May 2020 16:26:00,155 INFO : 65% Done

11 May 2020 16:26:00,260 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:00,260 INFO : Inserting SMAD4

11 May 2020 16:26:00,262 INFO : 70% Done

11 May 2020 16:26:00,332 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:00,332 INFO : Inserting SPINK1

11 May 2020 16:26:00,334 INFO : 76% Done

11 May 2020 16:26:00,437 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:00,437 INFO : Inserting SPRC

11 May 2020 16:26:00,440 INFO : 82% Done

11 May 2020 16:26:00,534 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:00,534 INFO : Inserting TFF3

11 May 2020 16:26:00,537 INFO : 89% Done

11 May 2020 16:26:00,644 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:00,644 INFO : Inserting TGFB1

11 May 2020 16:26:00,646 INFO : 93% Done

11 May 2020 16:26:00,697 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:00,697 INFO : Inserting VEGFA

11 May 2020 16:26:00,700 INFO : 98% Done

11 May 2020 16:26:00,782 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:00,783 INFO : Done parsing Skyline document.

11 May 2020 16:26:00,785 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:26:00,813 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:26:00,877 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:26:00,901 INFO : Cleaning up temp tables

11 May 2020 16:26:00,905 INFO : Completed import of Skyline document from CPDR-FFPE-ID-711_2020-01-28_13-36-44.sky.zip

11 May 2020 16:26:00,914 INFO : 100% Done

11 May 2020 16:26:00,927 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80267/CPDR-FFPE-ID-711_2020-01-28_13-36-44.sky.zip into the system

11 May 2020 16:26:00,927 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80269/CPDR-FFPE-ID-674_2020-01-28_13-37-10/CPDR-FFPE-ID-674.skyd into the system

11 May 2020 16:26:00,928 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80269/CPDR-FFPE-ID-674_2020-01-28_13-37-10/CPDR-FFPE-ID-674.skyd into the system

11 May 2020 16:26:00,928 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80269/CPDR-FFPE-ID-674_2020-01-28_13-37-10.sky.zip into the system

11 May 2020 16:26:00,932 INFO : Starting import from CPDR-FFPE-ID-674_2020-01-28_13-37-10.sky.zip

11 May 2020 16:26:00,939 INFO : Starting to import Skyline document from CPDR-FFPE-ID-674_2020-01-28_13-37-10.sky.zip

11 May 2020 16:26:00,946 INFO : Expanding CPDR-FFPE-ID-674.skyd

11 May 2020 16:26:01,085 INFO : Expanding CPDR-FFPE-ID-674.sky.view

11 May 2020 16:26:01,086 INFO : Expanding CPDR-FFPE-ID-674.sky

11 May 2020 16:26:01,093 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:26:01,096 INFO : 5% Done

11 May 2020 16:26:01,202 INFO : Inserting ANXA2

11 May 2020 16:26:01,209 INFO : 14% Done

11 May 2020 16:26:01,288 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:01,289 INFO : Inserting CAMKK2

11 May 2020 16:26:01,291 INFO : 21% Done

11 May 2020 16:26:01,369 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:01,370 INFO : Inserting CCND1

11 May 2020 16:26:01,372 INFO : 28% Done

11 May 2020 16:26:01,452 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:01,452 INFO : Inserting EGFR

11 May 2020 16:26:01,454 INFO : 32% Done

11 May 2020 16:26:01,517 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:01,518 INFO : Inserting ERG_pan

11 May 2020 16:26:01,520 INFO : 39% Done

11 May 2020 16:26:01,600 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:01,600 INFO : Inserting FOLH1

11 May 2020 16:26:01,602 INFO : 42% Done

11 May 2020 16:26:01,646 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:01,646 INFO : 44% Done

11 May 2020 16:26:01,646 INFO : Inserting MMP9

11 May 2020 16:26:01,649 INFO : 48% Done

11 May 2020 16:26:01,712 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:01,713 INFO : Inserting MUC1

11 May 2020 16:26:01,715 INFO : 53% Done

11 May 2020 16:26:01,759 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:01,759 INFO : Inserting NCOA2

11 May 2020 16:26:01,761 INFO : 60% Done

11 May 2020 16:26:01,821 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:01,821 INFO : Inserting PSA

11 May 2020 16:26:01,823 INFO : 66% Done

11 May 2020 16:26:01,886 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:01,886 INFO : Inserting SMAD4

11 May 2020 16:26:01,888 INFO : 71% Done

11 May 2020 16:26:01,936 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:01,936 INFO : Inserting SPINK1

11 May 2020 16:26:01,938 INFO : 76% Done

11 May 2020 16:26:02,007 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:02,007 INFO : Inserting SPRC

11 May 2020 16:26:02,009 INFO : 82% Done

11 May 2020 16:26:02,073 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:02,073 INFO : Inserting TFF3

11 May 2020 16:26:02,075 INFO : 89% Done

11 May 2020 16:26:02,137 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:02,138 INFO : Inserting TGFB1

11 May 2020 16:26:02,139 INFO : 92% Done

11 May 2020 16:26:02,175 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:02,176 INFO : Inserting VEGFA

11 May 2020 16:26:02,178 INFO : 98% Done

11 May 2020 16:26:02,241 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:02,241 INFO : Done parsing Skyline document.

11 May 2020 16:26:02,244 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:26:02,268 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:26:02,327 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:26:02,348 INFO : Cleaning up temp tables

11 May 2020 16:26:02,363 INFO : Completed import of Skyline document from CPDR-FFPE-ID-674_2020-01-28_13-37-10.sky.zip

11 May 2020 16:26:02,364 INFO : 100% Done

11 May 2020 16:26:02,375 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80269/CPDR-FFPE-ID-674_2020-01-28_13-37-10.sky.zip into the system

11 May 2020 16:26:02,376 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80274/CPDR-FFPE-ID-566_2020-01-28_13-40-13/CPDR-FFPE-ID-566.skyd into the system

11 May 2020 16:26:02,377 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80274/CPDR-FFPE-ID-566_2020-01-28_13-40-13/CPDR-FFPE-ID-566.skyd into the system

11 May 2020 16:26:02,378 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80274/CPDR-FFPE-ID-566_2020-01-28_13-40-13.sky.zip into the system

11 May 2020 16:26:02,382 INFO : Starting import from CPDR-FFPE-ID-566_2020-01-28_13-40-13.sky.zip

11 May 2020 16:26:02,389 INFO : Starting to import Skyline document from CPDR-FFPE-ID-566_2020-01-28_13-40-13.sky.zip

11 May 2020 16:26:02,396 INFO : Expanding CPDR-FFPE-ID-566.skyd

11 May 2020 16:26:02,545 INFO : Expanding CPDR-FFPE-ID-566.sky.view

11 May 2020 16:26:02,546 INFO : Expanding CPDR-FFPE-ID-566.sky

11 May 2020 16:26:02,554 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:26:02,557 INFO : 5% Done

11 May 2020 16:26:02,739 INFO : Inserting ANXA2

11 May 2020 16:26:02,748 INFO : 14% Done

11 May 2020 16:26:02,833 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:02,833 INFO : Inserting CAMKK2

11 May 2020 16:26:02,835 INFO : 21% Done

11 May 2020 16:26:02,907 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:02,907 INFO : Inserting CCND1

11 May 2020 16:26:02,910 INFO : 28% Done

11 May 2020 16:26:02,989 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:02,990 INFO : Inserting EGFR

11 May 2020 16:26:02,991 INFO : 32% Done

11 May 2020 16:26:03,039 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:03,039 INFO : Inserting ERG_pan

11 May 2020 16:26:03,041 INFO : 39% Done

11 May 2020 16:26:03,103 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:03,103 INFO : Inserting FOLH1

11 May 2020 16:26:03,105 INFO : 42% Done

11 May 2020 16:26:03,144 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:03,144 INFO : Inserting MMP9

11 May 2020 16:26:03,146 INFO : 48% Done

11 May 2020 16:26:03,207 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:03,207 INFO : 50% Done

11 May 2020 16:26:03,208 INFO : Inserting MUC1

11 May 2020 16:26:03,258 INFO : 53% Done

11 May 2020 16:26:03,310 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:03,310 INFO : 55% Done

11 May 2020 16:26:03,310 INFO : Inserting NCOA2

11 May 2020 16:26:03,312 INFO : 59% Done

11 May 2020 16:26:03,377 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:03,377 INFO : Inserting PSA

11 May 2020 16:26:03,379 INFO : 66% Done

11 May 2020 16:26:03,436 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:03,436 INFO : Inserting SMAD4

11 May 2020 16:26:03,438 INFO : 70% Done

11 May 2020 16:26:03,491 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:03,492 INFO : 72% Done

11 May 2020 16:26:03,492 INFO : Inserting SPINK1

11 May 2020 16:26:03,494 INFO : 76% Done

11 May 2020 16:26:03,557 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:03,557 INFO : Inserting SPRC

11 May 2020 16:26:03,559 INFO : 82% Done

11 May 2020 16:26:03,622 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:03,622 INFO : Inserting TFF3

11 May 2020 16:26:03,624 INFO : 88% Done

11 May 2020 16:26:03,705 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:03,705 INFO : Inserting TGFB1

11 May 2020 16:26:03,707 INFO : 92% Done

11 May 2020 16:26:03,745 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:03,745 INFO : Inserting VEGFA

11 May 2020 16:26:03,748 INFO : 98% Done

11 May 2020 16:26:03,820 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:03,821 INFO : Done parsing Skyline document.

11 May 2020 16:26:03,823 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:26:03,849 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:26:03,907 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:26:03,929 INFO : Cleaning up temp tables

11 May 2020 16:26:04,437 INFO : Completed import of Skyline document from CPDR-FFPE-ID-566_2020-01-28_13-40-13.sky.zip

11 May 2020 16:26:04,439 INFO : 100% Done

11 May 2020 16:26:04,450 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80274/CPDR-FFPE-ID-566_2020-01-28_13-40-13.sky.zip into the system

11 May 2020 16:26:04,450 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80286/CPDR-FFPE-ID-615_2020-01-28_13-43-38/CPDR-FFPE-ID-615.skyd into the system

11 May 2020 16:26:04,452 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80286/CPDR-FFPE-ID-615_2020-01-28_13-43-38/CPDR-FFPE-ID-615.skyd into the system

11 May 2020 16:26:04,452 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80286/CPDR-FFPE-ID-615_2020-01-28_13-43-38.sky.zip into the system

11 May 2020 16:26:04,456 INFO : Starting import from CPDR-FFPE-ID-615_2020-01-28_13-43-38.sky.zip

11 May 2020 16:26:04,464 INFO : Starting to import Skyline document from CPDR-FFPE-ID-615_2020-01-28_13-43-38.sky.zip

11 May 2020 16:26:04,479 INFO : Expanding CPDR-FFPE-ID-615.skyd

11 May 2020 16:26:04,943 INFO : Expanding CPDR-FFPE-ID-615.sky.view

11 May 2020 16:26:04,943 INFO : Expanding CPDR-FFPE-ID-615.sky

11 May 2020 16:26:04,954 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:26:04,958 INFO : 6% Done

11 May 2020 16:26:05,327 INFO : Inserting ANXA2

11 May 2020 16:26:05,332 INFO : 14% Done

11 May 2020 16:26:05,470 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:05,471 INFO : Inserting CAMKK2

11 May 2020 16:26:05,472 INFO : 21% Done

11 May 2020 16:26:05,618 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:05,618 INFO : Inserting CCND1

11 May 2020 16:26:05,622 INFO : 26% Done

11 May 2020 16:26:05,750 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:05,750 INFO : Inserting EGFR

11 May 2020 16:26:05,754 INFO : 34% Done

11 May 2020 16:26:05,934 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:05,935 INFO : Inserting ERG_pan

11 May 2020 16:26:05,939 INFO : 44% Done

11 May 2020 16:26:06,143 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:06,143 INFO : Inserting FOLH1

11 May 2020 16:26:06,146 INFO : 49% Done

11 May 2020 16:26:06,260 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:06,261 INFO : Inserting MMP9

11 May 2020 16:26:06,264 INFO : 57% Done

11 May 2020 16:26:06,397 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:06,397 INFO : Inserting MUC1

11 May 2020 16:26:06,401 INFO : 62% Done

11 May 2020 16:26:06,507 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:06,507 INFO : Inserting NCOA2

11 May 2020 16:26:06,510 INFO : 69% Done

11 May 2020 16:26:06,652 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:06,652 INFO : Inserting PSA

11 May 2020 16:26:06,655 INFO : 73% Done

11 May 2020 16:26:06,756 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:06,756 INFO : Inserting SMAD4

11 May 2020 16:26:06,758 INFO : 76% Done

11 May 2020 16:26:06,844 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:06,844 INFO : Inserting SPINK1

11 May 2020 16:26:06,847 INFO : 81% Done

11 May 2020 16:26:06,948 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:06,948 INFO : Inserting SPRC

11 May 2020 16:26:06,950 INFO : 85% Done

11 May 2020 16:26:07,052 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:07,052 INFO : Inserting TFF3

11 May 2020 16:26:07,055 INFO : 90% Done

11 May 2020 16:26:07,145 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:07,145 INFO : Inserting TGFB1

11 May 2020 16:26:07,147 INFO : 92% Done

11 May 2020 16:26:07,190 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:07,190 INFO : Inserting VEGFA

11 May 2020 16:26:07,193 INFO : 98% Done

11 May 2020 16:26:07,339 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:07,339 INFO : Done parsing Skyline document.

11 May 2020 16:26:07,341 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:26:07,377 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:26:07,544 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:26:07,590 INFO : Cleaning up temp tables

11 May 2020 16:26:08,095 INFO : Completed import of Skyline document from CPDR-FFPE-ID-615_2020-01-28_13-43-38.sky.zip

11 May 2020 16:26:08,097 INFO : 100% Done

11 May 2020 16:26:08,109 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80286/CPDR-FFPE-ID-615_2020-01-28_13-43-38.sky.zip into the system

11 May 2020 16:26:08,109 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80211/CPDR-FFPE-ID-168_2020-01-28_11-21-25/CPDR-FFPE-ID-168.skyd into the system

11 May 2020 16:26:08,111 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80211/CPDR-FFPE-ID-168_2020-01-28_11-21-25/CPDR-FFPE-ID-168.skyd into the system

11 May 2020 16:26:08,111 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80211/CPDR-FFPE-ID-168_2020-01-28_11-21-25.sky.zip into the system

11 May 2020 16:26:08,115 INFO : Starting import from CPDR-FFPE-ID-168_2020-01-28_11-21-25.sky.zip

11 May 2020 16:26:08,121 INFO : Starting to import Skyline document from CPDR-FFPE-ID-168_2020-01-28_11-21-25.sky.zip

11 May 2020 16:26:08,136 INFO : Expanding CPDR-FFPE-ID-168.skyd

11 May 2020 16:26:08,408 INFO : Expanding CPDR-FFPE-ID-168.sky.view

11 May 2020 16:26:08,409 INFO : Expanding CPDR-FFPE-ID-168.sky

11 May 2020 16:26:08,418 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1

11 May 2020 16:26:08,421 INFO : 6% Done

11 May 2020 16:26:08,720 INFO : Inserting ANXA2

11 May 2020 16:26:08,729 INFO : 14% Done

11 May 2020 16:26:08,828 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:08,828 INFO : Inserting CAMKK2

11 May 2020 16:26:08,831 INFO : 21% Done

11 May 2020 16:26:08,917 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:08,917 INFO : Inserting CCND1

11 May 2020 16:26:08,920 INFO : 27% Done

11 May 2020 16:26:09,023 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:09,023 INFO : Inserting EGFR

11 May 2020 16:26:09,025 INFO : 32% Done

11 May 2020 16:26:09,105 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:09,105 INFO : Inserting ERG_pan

11 May 2020 16:26:09,108 INFO : 41% Done

11 May 2020 16:26:09,248 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:09,248 INFO : Inserting FOLH1

11 May 2020 16:26:09,250 INFO : 46% Done

11 May 2020 16:26:09,318 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:09,318 INFO : Inserting MMP9

11 May 2020 16:26:09,322 INFO : 56% Done

11 May 2020 16:26:09,484 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:09,484 INFO : Inserting MUC1

11 May 2020 16:26:09,486 INFO : 61% Done

11 May 2020 16:26:09,551 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:09,552 INFO : Inserting NCOA2

11 May 2020 16:26:09,554 INFO : 64% Done

11 May 2020 16:26:09,612 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:09,612 INFO : Inserting PSA

11 May 2020 16:26:09,614 INFO : 71% Done

11 May 2020 16:26:09,703 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:09,703 INFO : Inserting SMAD4

11 May 2020 16:26:09,705 INFO : 75% Done

11 May 2020 16:26:09,778 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:09,778 INFO : Inserting SPINK1

11 May 2020 16:26:09,781 INFO : 81% Done

11 May 2020 16:26:09,859 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:09,859 INFO : Inserting SPRC

11 May 2020 16:26:09,861 INFO : 84% Done

11 May 2020 16:26:09,920 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:09,920 INFO : Inserting TFF3

11 May 2020 16:26:09,923 INFO : 90% Done

11 May 2020 16:26:10,008 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:10,008 INFO : Inserting TGFB1

11 May 2020 16:26:10,010 INFO : 93% Done

11 May 2020 16:26:10,053 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:10,053 INFO : Inserting VEGFA

11 May 2020 16:26:10,056 INFO : 98% Done

11 May 2020 16:26:10,140 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:10,140 INFO : Done parsing Skyline document.

11 May 2020 16:26:10,142 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:26:10,171 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:26:10,235 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:26:10,267 INFO : Cleaning up temp tables

11 May 2020 16:26:10,271 INFO : Completed import of Skyline document from CPDR-FFPE-ID-168_2020-01-28_11-21-25.sky.zip

11 May 2020 16:26:10,283 INFO : 100% Done

11 May 2020 16:26:10,295 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80211/CPDR-FFPE-ID-168_2020-01-28_11-21-25.sky.zip into the system

11 May 2020 16:26:10,295 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80242/CPDR-FFPE-ID-556_2020-01-28_13-31-31/CPDR-FFPE-ID-556.skyd into the system

11 May 2020 16:26:10,297 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80242/CPDR-FFPE-ID-556_2020-01-28_13-31-31/CPDR-FFPE-ID-556.skyd into the system

11 May 2020 16:26:10,297 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80242/CPDR-FFPE-ID-556_2020-01-28_13-31-31.sky.zip into the system

11 May 2020 16:26:10,301 INFO : Starting import from CPDR-FFPE-ID-556_2020-01-28_13-31-31.sky.zip

11 May 2020 16:26:10,308 INFO : Starting to import Skyline document from CPDR-FFPE-ID-556_2020-01-28_13-31-31.sky.zip

11 May 2020 16:26:10,314 INFO : Expanding CPDR-FFPE-ID-556.skyd

11 May 2020 16:26:10,435 INFO : Expanding CPDR-FFPE-ID-556.sky.view

11 May 2020 16:26:10,435 INFO : Expanding CPDR-FFPE-ID-556.sky

11 May 2020 16:26:10,442 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:26:10,445 INFO : 6% Done

11 May 2020 16:26:10,553 INFO : Inserting ANXA2

11 May 2020 16:26:10,560 INFO : 13% Done

11 May 2020 16:26:10,635 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:10,635 INFO : Inserting CAMKK2

11 May 2020 16:26:10,637 INFO : 19% Done

11 May 2020 16:26:10,682 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:10,682 INFO : Inserting CCND1

11 May 2020 16:26:10,685 INFO : 26% Done

11 May 2020 16:26:10,762 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:10,762 INFO : Inserting EGFR

11 May 2020 16:26:10,764 INFO : 32% Done

11 May 2020 16:26:10,808 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:10,808 INFO : Inserting ERG_pan

11 May 2020 16:26:10,811 INFO : 39% Done

11 May 2020 16:26:10,885 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:10,885 INFO : Inserting FOLH1

11 May 2020 16:26:10,887 INFO : 43% Done

11 May 2020 16:26:10,932 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:10,932 INFO : Inserting MMP9

11 May 2020 16:26:10,934 INFO : 51% Done

11 May 2020 16:26:11,005 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:11,005 INFO : Inserting MUC1

11 May 2020 16:26:11,008 INFO : 55% Done

11 May 2020 16:26:11,053 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:11,053 INFO : Inserting NCOA2

11 May 2020 16:26:11,055 INFO : 60% Done

11 May 2020 16:26:11,103 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:11,103 INFO : Inserting PSA

11 May 2020 16:26:11,105 INFO : 66% Done

11 May 2020 16:26:11,173 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:11,173 INFO : Inserting SMAD4

11 May 2020 16:26:11,176 INFO : 72% Done

11 May 2020 16:26:11,220 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:11,221 INFO : Inserting SPINK1

11 May 2020 16:26:11,223 INFO : 76% Done

11 May 2020 16:26:11,289 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:11,289 INFO : Inserting SPRC

11 May 2020 16:26:11,291 INFO : 82% Done

11 May 2020 16:26:11,341 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:11,341 INFO : Inserting TFF3

11 May 2020 16:26:11,343 INFO : 90% Done

11 May 2020 16:26:11,416 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:11,416 INFO : Inserting TGFB1

11 May 2020 16:26:11,418 INFO : 94% Done

11 May 2020 16:26:11,452 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:11,452 INFO : Inserting VEGFA

11 May 2020 16:26:11,454 INFO : 98% Done

11 May 2020 16:26:11,508 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:11,508 INFO : Done parsing Skyline document.

11 May 2020 16:26:11,510 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:26:11,536 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:26:11,578 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:26:11,594 INFO : Cleaning up temp tables

11 May 2020 16:26:12,082 INFO : Completed import of Skyline document from CPDR-FFPE-ID-556_2020-01-28_13-31-31.sky.zip

11 May 2020 16:26:12,084 INFO : 100% Done

11 May 2020 16:26:12,095 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80242/CPDR-FFPE-ID-556_2020-01-28_13-31-31.sky.zip into the system

11 May 2020 16:26:12,095 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80250/CPDR-FFPE-ID-468_2020-01-28_13-33-04/CPDR-FFPE-ID-468.skyd into the system

11 May 2020 16:26:12,097 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80250/CPDR-FFPE-ID-468_2020-01-28_13-33-04/CPDR-FFPE-ID-468.skyd into the system

11 May 2020 16:26:12,097 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80250/CPDR-FFPE-ID-468_2020-01-28_13-33-04.sky.zip into the system

11 May 2020 16:26:12,101 INFO : Starting import from CPDR-FFPE-ID-468_2020-01-28_13-33-04.sky.zip

11 May 2020 16:26:12,108 INFO : Starting to import Skyline document from CPDR-FFPE-ID-468_2020-01-28_13-33-04.sky.zip

11 May 2020 16:26:12,113 INFO : Expanding CPDR-FFPE-ID-468.skyd

11 May 2020 16:26:12,239 INFO : Expanding CPDR-FFPE-ID-468.sky.view

11 May 2020 16:26:12,239 INFO : Expanding CPDR-FFPE-ID-468.sky

11 May 2020 16:26:12,247 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:26:12,250 INFO : 6% Done

11 May 2020 16:26:12,358 INFO : Inserting ANXA2

11 May 2020 16:26:12,365 INFO : 13% Done

11 May 2020 16:26:12,416 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:12,416 INFO : Inserting CAMKK2

11 May 2020 16:26:12,418 INFO : 19% Done

11 May 2020 16:26:12,465 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:12,465 INFO : Inserting CCND1

11 May 2020 16:26:12,467 INFO : 26% Done

11 May 2020 16:26:12,541 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:12,541 INFO : Inserting EGFR

11 May 2020 16:26:12,543 INFO : 29% Done

11 May 2020 16:26:12,583 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:12,583 INFO : 31% Done

11 May 2020 16:26:12,583 INFO : Inserting ERG_pan

11 May 2020 16:26:12,585 INFO : 37% Done

11 May 2020 16:26:12,645 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:12,645 INFO : Inserting FOLH1

11 May 2020 16:26:12,647 INFO : 43% Done

11 May 2020 16:26:12,686 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:12,686 INFO : Inserting MMP9

11 May 2020 16:26:12,688 INFO : 48% Done

11 May 2020 16:26:12,749 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:12,749 INFO : Inserting MUC1

11 May 2020 16:26:12,751 INFO : 52% Done

11 May 2020 16:26:12,790 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:12,790 INFO : 54% Done

11 May 2020 16:26:12,790 INFO : Inserting NCOA2

11 May 2020 16:26:12,792 INFO : 58% Done

11 May 2020 16:26:12,836 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:12,836 INFO : Inserting PSA

11 May 2020 16:26:12,839 INFO : 66% Done

11 May 2020 16:26:12,903 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:12,904 INFO : Inserting SMAD4

11 May 2020 16:26:12,906 INFO : 71% Done

11 May 2020 16:26:12,946 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:12,946 INFO : Inserting SPINK1

11 May 2020 16:26:12,948 INFO : 78% Done

11 May 2020 16:26:13,011 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:13,011 INFO : Inserting SPRC

11 May 2020 16:26:13,013 INFO : 82% Done

11 May 2020 16:26:13,057 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:13,058 INFO : Inserting TFF3

11 May 2020 16:26:13,060 INFO : 89% Done

11 May 2020 16:26:13,124 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:13,124 INFO : Inserting TGFB1

11 May 2020 16:26:13,126 INFO : 93% Done

11 May 2020 16:26:13,159 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:13,159 INFO : Inserting VEGFA

11 May 2020 16:26:13,161 INFO : 98% Done

11 May 2020 16:26:13,206 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:13,206 INFO : Done parsing Skyline document.

11 May 2020 16:26:13,208 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:26:13,233 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:26:13,275 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:26:13,291 INFO : Cleaning up temp tables

11 May 2020 16:26:13,305 INFO : Completed import of Skyline document from CPDR-FFPE-ID-468_2020-01-28_13-33-04.sky.zip

11 May 2020 16:26:13,306 INFO : 100% Done

11 May 2020 16:26:13,318 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80250/CPDR-FFPE-ID-468_2020-01-28_13-33-04.sky.zip into the system

11 May 2020 16:26:13,318 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80251/CPDR-FFPE-ID-668_2020-01-28_13-33-16/CPDR-FFPE-ID-668.skyd into the system

11 May 2020 16:26:13,319 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80251/CPDR-FFPE-ID-668_2020-01-28_13-33-16/CPDR-FFPE-ID-668.skyd into the system

11 May 2020 16:26:13,319 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80251/CPDR-FFPE-ID-668_2020-01-28_13-33-16.sky.zip into the system

11 May 2020 16:26:13,323 INFO : Starting import from CPDR-FFPE-ID-668_2020-01-28_13-33-16.sky.zip

11 May 2020 16:26:13,330 INFO : Starting to import Skyline document from CPDR-FFPE-ID-668_2020-01-28_13-33-16.sky.zip

11 May 2020 16:26:13,339 INFO : Expanding CPDR-FFPE-ID-668.skyd

11 May 2020 16:26:13,570 INFO : Expanding CPDR-FFPE-ID-668.sky.view

11 May 2020 16:26:13,571 INFO : Expanding CPDR-FFPE-ID-668.sky

11 May 2020 16:26:13,580 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:26:13,583 INFO : 6% Done

11 May 2020 16:26:13,771 INFO : Inserting ANXA2

11 May 2020 16:26:13,779 INFO : 15% Done

11 May 2020 16:26:13,876 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:13,877 INFO : Inserting CAMKK2

11 May 2020 16:26:13,879 INFO : 21% Done

11 May 2020 16:26:13,968 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:13,968 INFO : Inserting CCND1

11 May 2020 16:26:13,971 INFO : 26% Done

11 May 2020 16:26:14,048 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:14,048 INFO : Inserting EGFR

11 May 2020 16:26:14,050 INFO : 31% Done

11 May 2020 16:26:14,119 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:14,119 INFO : Inserting ERG_pan

11 May 2020 16:26:14,121 INFO : 37% Done

11 May 2020 16:26:14,203 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:14,203 INFO : Inserting FOLH1

11 May 2020 16:26:14,205 INFO : 40% Done

11 May 2020 16:26:14,245 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:14,245 INFO : Inserting MMP9

11 May 2020 16:26:14,247 INFO : 46% Done

11 May 2020 16:26:14,325 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:14,325 INFO : Inserting MUC1

11 May 2020 16:26:14,327 INFO : 50% Done

11 May 2020 16:26:14,384 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:14,384 INFO : Inserting NCOA2

11 May 2020 16:26:14,387 INFO : 57% Done

11 May 2020 16:26:14,481 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:14,481 INFO : Inserting PSA

11 May 2020 16:26:14,483 INFO : 63% Done

11 May 2020 16:26:14,574 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:14,574 INFO : Inserting SMAD4

11 May 2020 16:26:14,576 INFO : 69% Done

11 May 2020 16:26:14,655 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:14,655 INFO : Inserting SPINK1

11 May 2020 16:26:14,658 INFO : 76% Done

11 May 2020 16:26:14,760 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:14,760 INFO : Inserting SPRC

11 May 2020 16:26:14,763 INFO : 83% Done

11 May 2020 16:26:14,866 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:14,867 INFO : Inserting TFF3

11 May 2020 16:26:14,869 INFO : 88% Done

11 May 2020 16:26:14,944 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:14,944 INFO : Inserting TGFB1

11 May 2020 16:26:14,946 INFO : 91% Done

11 May 2020 16:26:15,000 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:15,000 INFO : Inserting VEGFA

11 May 2020 16:26:15,002 INFO : 98% Done

11 May 2020 16:26:15,097 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:15,097 INFO : Done parsing Skyline document.

11 May 2020 16:26:15,099 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:26:15,128 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:26:15,197 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:26:15,223 INFO : Cleaning up temp tables

11 May 2020 16:26:15,226 INFO : Completed import of Skyline document from CPDR-FFPE-ID-668_2020-01-28_13-33-16.sky.zip

11 May 2020 16:26:15,235 INFO : 100% Done

11 May 2020 16:26:15,247 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80251/CPDR-FFPE-ID-668_2020-01-28_13-33-16.sky.zip into the system

11 May 2020 16:26:15,248 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80252/CPDR-FFPE-ID-550_2020-01-28_13-33-28/CPDR-FFPE-ID-550.skyd into the system

11 May 2020 16:26:15,249 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80252/CPDR-FFPE-ID-550_2020-01-28_13-33-28/CPDR-FFPE-ID-550.skyd into the system

11 May 2020 16:26:15,249 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80252/CPDR-FFPE-ID-550_2020-01-28_13-33-28.sky.zip into the system

11 May 2020 16:26:15,254 INFO : Starting import from CPDR-FFPE-ID-550_2020-01-28_13-33-28.sky.zip

11 May 2020 16:26:15,260 INFO : Starting to import Skyline document from CPDR-FFPE-ID-550_2020-01-28_13-33-28.sky.zip

11 May 2020 16:26:15,271 INFO : Expanding CPDR-FFPE-ID-550.skyd

11 May 2020 16:26:15,572 INFO : Expanding CPDR-FFPE-ID-550.sky.view

11 May 2020 16:26:15,573 INFO : Expanding CPDR-FFPE-ID-550.sky

11 May 2020 16:26:15,583 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:26:15,586 INFO : 6% Done

11 May 2020 16:26:15,803 INFO : Inserting ANXA2

11 May 2020 16:26:15,811 INFO : 15% Done

11 May 2020 16:26:15,964 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:15,965 INFO : 16% Done

11 May 2020 16:26:15,965 INFO : Inserting CAMKK2

11 May 2020 16:26:15,968 INFO : 23% Done

11 May 2020 16:26:16,088 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:16,088 INFO : Inserting CCND1

11 May 2020 16:26:16,091 INFO : 31% Done

11 May 2020 16:26:16,242 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:16,242 INFO : Inserting EGFR

11 May 2020 16:26:16,244 INFO : 35% Done

11 May 2020 16:26:16,313 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:16,313 INFO : Inserting ERG_pan

11 May 2020 16:26:16,316 INFO : 40% Done

11 May 2020 16:26:16,399 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:16,400 INFO : Inserting FOLH1

11 May 2020 16:26:16,418 INFO : 42% Done

11 May 2020 16:26:16,472 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:16,473 INFO : Inserting MMP9

11 May 2020 16:26:16,475 INFO : 47% Done

11 May 2020 16:26:16,562 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:16,562 INFO : Inserting MUC1

11 May 2020 16:26:16,564 INFO : 51% Done

11 May 2020 16:26:16,634 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:16,634 INFO : Inserting NCOA2

11 May 2020 16:26:16,637 INFO : 58% Done

11 May 2020 16:26:16,742 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:16,742 INFO : Inserting PSA

11 May 2020 16:26:16,745 INFO : 64% Done

11 May 2020 16:26:16,855 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:16,856 INFO : Inserting SMAD4

11 May 2020 16:26:16,858 INFO : 70% Done

11 May 2020 16:26:16,955 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:16,955 INFO : Inserting SPINK1

11 May 2020 16:26:16,958 INFO : 76% Done

11 May 2020 16:26:17,073 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:17,073 INFO : Inserting SPRC

11 May 2020 16:26:17,076 INFO : 83% Done

11 May 2020 16:26:17,202 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:17,202 INFO : Inserting TFF3

11 May 2020 16:26:17,204 INFO : 88% Done

11 May 2020 16:26:17,303 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:17,303 INFO : Inserting TGFB1

11 May 2020 16:26:17,305 INFO : 91% Done

11 May 2020 16:26:17,358 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:17,359 INFO : 92% Done

11 May 2020 16:26:17,359 INFO : Inserting VEGFA

11 May 2020 16:26:17,362 INFO : 98% Done

11 May 2020 16:26:17,480 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:17,480 INFO : Done parsing Skyline document.

11 May 2020 16:26:17,482 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:26:17,514 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:26:17,605 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:26:17,638 INFO : Cleaning up temp tables

11 May 2020 16:26:17,642 INFO : Completed import of Skyline document from CPDR-FFPE-ID-550_2020-01-28_13-33-28.sky.zip

11 May 2020 16:26:17,654 INFO : 100% Done

11 May 2020 16:26:17,668 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80252/CPDR-FFPE-ID-550_2020-01-28_13-33-28.sky.zip into the system

11 May 2020 16:26:17,668 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80278/CPDR-FFPE-ID-570_2020-01-28_13-41-06/CPDR-FFPE-ID-570.skyd into the system

11 May 2020 16:26:17,669 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80278/CPDR-FFPE-ID-570_2020-01-28_13-41-06/CPDR-FFPE-ID-570.skyd into the system

11 May 2020 16:26:17,669 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80278/CPDR-FFPE-ID-570_2020-01-28_13-41-06.sky.zip into the system

11 May 2020 16:26:17,673 INFO : Starting import from CPDR-FFPE-ID-570_2020-01-28_13-41-06.sky.zip

11 May 2020 16:26:17,681 INFO : Starting to import Skyline document from CPDR-FFPE-ID-570_2020-01-28_13-41-06.sky.zip

11 May 2020 16:26:17,687 INFO : Expanding CPDR-FFPE-ID-570.skyd

11 May 2020 16:26:17,871 INFO : Expanding CPDR-FFPE-ID-570.sky.view

11 May 2020 16:26:17,872 INFO : Expanding CPDR-FFPE-ID-570.sky

11 May 2020 16:26:17,881 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:26:17,884 INFO : 6% Done

11 May 2020 16:26:18,099 INFO : Inserting ANXA2

11 May 2020 16:26:18,108 INFO : 15% Done

11 May 2020 16:26:18,206 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:18,206 INFO : Inserting CAMKK2

11 May 2020 16:26:18,209 INFO : 23% Done

11 May 2020 16:26:18,304 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:18,304 INFO : Inserting CCND1

11 May 2020 16:26:18,307 INFO : 30% Done

11 May 2020 16:26:18,412 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:18,413 INFO : 31% Done

11 May 2020 16:26:18,413 INFO : Inserting EGFR

11 May 2020 16:26:18,415 INFO : 34% Done

11 May 2020 16:26:18,464 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:18,464 INFO : Inserting ERG_pan

11 May 2020 16:26:18,466 INFO : 39% Done

11 May 2020 16:26:18,530 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:18,531 INFO : Inserting FOLH1

11 May 2020 16:26:18,532 INFO : 42% Done

11 May 2020 16:26:18,572 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:18,572 INFO : Inserting MMP9

11 May 2020 16:26:18,574 INFO : 47% Done

11 May 2020 16:26:18,636 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:18,636 INFO : Inserting MUC1

11 May 2020 16:26:18,638 INFO : 51% Done

11 May 2020 16:26:18,685 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:18,685 INFO : Inserting NCOA2

11 May 2020 16:26:18,688 INFO : 58% Done

11 May 2020 16:26:18,772 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:18,772 INFO : Inserting PSA

11 May 2020 16:26:18,774 INFO : 65% Done

11 May 2020 16:26:18,850 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:18,850 INFO : Inserting SMAD4

11 May 2020 16:26:18,852 INFO : 70% Done

11 May 2020 16:26:18,921 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:18,921 INFO : 72% Done

11 May 2020 16:26:18,921 INFO : Inserting SPINK1

11 May 2020 16:26:18,924 INFO : 77% Done

11 May 2020 16:26:19,008 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:19,009 INFO : Inserting SPRC

11 May 2020 16:26:19,011 INFO : 85% Done

11 May 2020 16:26:19,109 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:19,109 INFO : Inserting TFF3

11 May 2020 16:26:19,111 INFO : 89% Done

11 May 2020 16:26:19,170 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:19,170 INFO : Inserting TGFB1

11 May 2020 16:26:19,172 INFO : 93% Done

11 May 2020 16:26:19,211 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:19,211 INFO : Inserting VEGFA

11 May 2020 16:26:19,213 INFO : 98% Done

11 May 2020 16:26:19,285 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:19,285 INFO : Done parsing Skyline document.

11 May 2020 16:26:19,287 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:26:19,314 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:26:19,371 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:26:19,393 INFO : Cleaning up temp tables

11 May 2020 16:26:19,879 INFO : Completed import of Skyline document from CPDR-FFPE-ID-570_2020-01-28_13-41-06.sky.zip

11 May 2020 16:26:19,880 INFO : 100% Done

11 May 2020 16:26:19,892 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80278/CPDR-FFPE-ID-570_2020-01-28_13-41-06.sky.zip into the system

11 May 2020 16:26:19,893 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80293/CPDR-FFPE-ID-810_2020-01-28_13-45-08/CPDR-FFPE-ID-810.skyd into the system

11 May 2020 16:26:19,894 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80293/CPDR-FFPE-ID-810_2020-01-28_13-45-08/CPDR-FFPE-ID-810.skyd into the system

11 May 2020 16:26:19,894 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80293/CPDR-FFPE-ID-810_2020-01-28_13-45-08.sky.zip into the system

11 May 2020 16:26:19,898 INFO : Starting import from CPDR-FFPE-ID-810_2020-01-28_13-45-08.sky.zip

11 May 2020 16:26:19,905 INFO : Starting to import Skyline document from CPDR-FFPE-ID-810_2020-01-28_13-45-08.sky.zip

11 May 2020 16:26:19,911 INFO : Expanding CPDR-FFPE-ID-810.skyd

11 May 2020 16:26:20,080 INFO : Expanding CPDR-FFPE-ID-810.sky.view

11 May 2020 16:26:20,081 INFO : Expanding CPDR-FFPE-ID-810.sky

11 May 2020 16:26:20,090 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:26:20,093 INFO : 6% Done

11 May 2020 16:26:20,221 INFO : Inserting ANXA2

11 May 2020 16:26:20,229 INFO : 16% Done

11 May 2020 16:26:20,324 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:20,324 INFO : Inserting CAMKK2

11 May 2020 16:26:20,327 INFO : 24% Done

11 May 2020 16:26:20,421 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:20,421 INFO : Inserting CCND1

11 May 2020 16:26:20,423 INFO : 27% Done

11 May 2020 16:26:20,485 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:20,485 INFO : Inserting EGFR

11 May 2020 16:26:20,488 INFO : 35% Done

11 May 2020 16:26:20,565 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:20,565 INFO : Inserting ERG_pan

11 May 2020 16:26:20,567 INFO : 45% Done

11 May 2020 16:26:20,673 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:20,674 INFO : Inserting FOLH1

11 May 2020 16:26:20,676 INFO : 49% Done

11 May 2020 16:26:20,725 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:20,725 INFO : Inserting MMP9

11 May 2020 16:26:20,727 INFO : 57% Done

11 May 2020 16:26:20,830 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:20,830 INFO : Inserting MUC1

11 May 2020 16:26:20,832 INFO : 62% Done

11 May 2020 16:26:20,889 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:20,889 INFO : Inserting NCOA2

11 May 2020 16:26:20,891 INFO : 69% Done

11 May 2020 16:26:20,973 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:20,973 INFO : Inserting PSA

11 May 2020 16:26:20,975 INFO : 73% Done

11 May 2020 16:26:21,024 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:21,024 INFO : Inserting SMAD4

11 May 2020 16:26:21,026 INFO : 76% Done

11 May 2020 16:26:21,074 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:21,074 INFO : Inserting SPINK1

11 May 2020 16:26:21,076 INFO : 81% Done

11 May 2020 16:26:21,127 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:21,127 INFO : Inserting SPRC

11 May 2020 16:26:21,129 INFO : 85% Done

11 May 2020 16:26:21,179 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:21,179 INFO : Inserting TFF3

11 May 2020 16:26:21,181 INFO : 89% Done

11 May 2020 16:26:21,228 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:21,228 INFO : Inserting TGFB1

11 May 2020 16:26:21,229 INFO : 92% Done

11 May 2020 16:26:21,253 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:21,254 INFO : Inserting VEGFA

11 May 2020 16:26:21,256 INFO : 98% Done

11 May 2020 16:26:21,337 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:21,337 INFO : Done parsing Skyline document.

11 May 2020 16:26:21,340 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:26:21,366 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:26:21,419 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:26:21,440 INFO : Cleaning up temp tables

11 May 2020 16:26:21,456 INFO : Completed import of Skyline document from CPDR-FFPE-ID-810_2020-01-28_13-45-08.sky.zip

11 May 2020 16:26:21,457 INFO : 100% Done

11 May 2020 16:26:21,469 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80293/CPDR-FFPE-ID-810_2020-01-28_13-45-08.sky.zip into the system

11 May 2020 16:26:21,469 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80294/CPDR-FFPE-ID-863_2020-01-28_13-45-21/CPDR-FFPE-ID-863.skyd into the system

11 May 2020 16:26:21,470 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80294/CPDR-FFPE-ID-863_2020-01-28_13-45-21/CPDR-FFPE-ID-863.skyd into the system

11 May 2020 16:26:21,470 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80294/CPDR-FFPE-ID-863_2020-01-28_13-45-21.sky.zip into the system

11 May 2020 16:26:21,474 INFO : Starting import from CPDR-FFPE-ID-863_2020-01-28_13-45-21.sky.zip

11 May 2020 16:26:21,481 INFO : Starting to import Skyline document from CPDR-FFPE-ID-863_2020-01-28_13-45-21.sky.zip

11 May 2020 16:26:21,488 INFO : Expanding CPDR-FFPE-ID-863.skyd

11 May 2020 16:26:21,652 INFO : Expanding CPDR-FFPE-ID-863.sky.view

11 May 2020 16:26:21,652 INFO : Expanding CPDR-FFPE-ID-863.sky

11 May 2020 16:26:21,661 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:26:21,664 INFO : 6% Done

11 May 2020 16:26:21,826 INFO : Inserting ANXA2

11 May 2020 16:26:21,834 INFO : 15% Done

11 May 2020 16:26:21,931 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:21,931 INFO : Inserting CAMKK2

11 May 2020 16:26:21,934 INFO : 23% Done

11 May 2020 16:26:22,025 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:22,025 INFO : Inserting CCND1

11 May 2020 16:26:22,027 INFO : 27% Done

11 May 2020 16:26:22,078 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:22,078 INFO : Inserting EGFR

11 May 2020 16:26:22,080 INFO : 34% Done

11 May 2020 16:26:22,144 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:22,145 INFO : Inserting ERG_pan

11 May 2020 16:26:22,147 INFO : 41% Done

11 May 2020 16:26:22,227 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:22,227 INFO : 43% Done

11 May 2020 16:26:22,227 INFO : Inserting FOLH1

11 May 2020 16:26:22,229 INFO : 45% Done

11 May 2020 16:26:22,269 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:22,269 INFO : Inserting MMP9

11 May 2020 16:26:22,271 INFO : 54% Done

11 May 2020 16:26:22,365 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:22,365 INFO : 56% Done

11 May 2020 16:26:22,365 INFO : Inserting MUC1

11 May 2020 16:26:22,367 INFO : 60% Done

11 May 2020 16:26:22,416 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:22,416 INFO : Inserting NCOA2

11 May 2020 16:26:22,419 INFO : 67% Done

11 May 2020 16:26:22,485 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:22,485 INFO : Inserting PSA

11 May 2020 16:26:22,487 INFO : 70% Done

11 May 2020 16:26:22,526 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:22,526 INFO : Inserting SMAD4

11 May 2020 16:26:22,528 INFO : 76% Done

11 May 2020 16:26:22,595 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:22,595 INFO : Inserting SPINK1

11 May 2020 16:26:22,597 INFO : 81% Done

11 May 2020 16:26:22,643 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:22,643 INFO : Inserting SPRC

11 May 2020 16:26:22,644 INFO : 85% Done

11 May 2020 16:26:22,690 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:22,690 INFO : Inserting TFF3

11 May 2020 16:26:22,692 INFO : 89% Done

11 May 2020 16:26:22,735 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:22,735 INFO : Inserting TGFB1

11 May 2020 16:26:22,736 INFO : 91% Done

11 May 2020 16:26:22,759 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:22,759 INFO : Inserting VEGFA

11 May 2020 16:26:22,761 INFO : 98% Done

11 May 2020 16:26:22,839 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:22,839 INFO : Done parsing Skyline document.

11 May 2020 16:26:22,841 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:26:22,865 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:26:22,914 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:26:22,932 INFO : Cleaning up temp tables

11 May 2020 16:26:23,457 INFO : Completed import of Skyline document from CPDR-FFPE-ID-863_2020-01-28_13-45-21.sky.zip

11 May 2020 16:26:23,459 INFO : 100% Done

11 May 2020 16:26:23,470 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80294/CPDR-FFPE-ID-863_2020-01-28_13-45-21.sky.zip into the system

11 May 2020 16:26:23,470 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80295/CPDR-FFPE-ID-633_2020-01-28_13-45-32/CPDR-FFPE-ID-633.skyd into the system

11 May 2020 16:26:23,472 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80295/CPDR-FFPE-ID-633_2020-01-28_13-45-32/CPDR-FFPE-ID-633.skyd into the system

11 May 2020 16:26:23,472 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80295/CPDR-FFPE-ID-633_2020-01-28_13-45-32.sky.zip into the system

11 May 2020 16:26:23,476 INFO : Starting import from CPDR-FFPE-ID-633_2020-01-28_13-45-32.sky.zip

11 May 2020 16:26:23,482 INFO : Starting to import Skyline document from CPDR-FFPE-ID-633_2020-01-28_13-45-32.sky.zip

11 May 2020 16:26:23,489 INFO : Expanding CPDR-FFPE-ID-633.skyd

11 May 2020 16:26:23,659 INFO : Expanding CPDR-FFPE-ID-633.sky.view

11 May 2020 16:26:23,660 INFO : Expanding CPDR-FFPE-ID-633.sky

11 May 2020 16:26:23,668 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:26:23,671 INFO : 6% Done

11 May 2020 16:26:23,907 INFO : Inserting ANXA2

11 May 2020 16:26:23,915 INFO : 15% Done

11 May 2020 16:26:24,009 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:24,010 INFO : Inserting CAMKK2

11 May 2020 16:26:24,012 INFO : 22% Done

11 May 2020 16:26:24,107 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:24,107 INFO : Inserting CCND1

11 May 2020 16:26:24,109 INFO : 27% Done

11 May 2020 16:26:24,165 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:24,165 INFO : Inserting EGFR

11 May 2020 16:26:24,168 INFO : 33% Done

11 May 2020 16:26:24,249 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:24,249 INFO : Inserting ERG_pan

11 May 2020 16:26:24,252 INFO : 42% Done

11 May 2020 16:26:24,358 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:24,358 INFO : Inserting FOLH1

11 May 2020 16:26:24,360 INFO : 46% Done

11 May 2020 16:26:24,404 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:24,404 INFO : Inserting MMP9

11 May 2020 16:26:24,407 INFO : 55% Done

11 May 2020 16:26:24,521 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:24,521 INFO : Inserting MUC1

11 May 2020 16:26:24,523 INFO : 61% Done

11 May 2020 16:26:24,594 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:24,594 INFO : Inserting NCOA2

11 May 2020 16:26:24,597 INFO : 68% Done

11 May 2020 16:26:24,672 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:24,672 INFO : Inserting PSA

11 May 2020 16:26:24,674 INFO : 72% Done

11 May 2020 16:26:24,722 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:24,722 INFO : Inserting SMAD4

11 May 2020 16:26:24,725 INFO : 76% Done

11 May 2020 16:26:24,796 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:24,796 INFO : Inserting SPINK1

11 May 2020 16:26:24,798 INFO : 81% Done

11 May 2020 16:26:24,849 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:24,849 INFO : Inserting SPRC

11 May 2020 16:26:24,851 INFO : 85% Done

11 May 2020 16:26:24,904 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:24,904 INFO : Inserting TFF3

11 May 2020 16:26:24,906 INFO : 89% Done

11 May 2020 16:26:24,956 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:24,956 INFO : Inserting TGFB1

11 May 2020 16:26:24,957 INFO : 92% Done

11 May 2020 16:26:24,981 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:24,981 INFO : Inserting VEGFA

11 May 2020 16:26:24,984 INFO : 98% Done

11 May 2020 16:26:25,066 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:25,066 INFO : Done parsing Skyline document.

11 May 2020 16:26:25,069 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:26:25,095 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:26:25,150 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:26:25,171 INFO : Cleaning up temp tables

11 May 2020 16:26:25,663 INFO : Completed import of Skyline document from CPDR-FFPE-ID-633_2020-01-28_13-45-32.sky.zip

11 May 2020 16:26:25,665 INFO : 100% Done

11 May 2020 16:26:25,677 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80295/CPDR-FFPE-ID-633_2020-01-28_13-45-32.sky.zip into the system

11 May 2020 16:26:25,677 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80227/CPDR-FFPE-ID-466_2020-01-28_13-26-11/CPDR-FFPE-ID-466.skyd into the system

11 May 2020 16:26:25,679 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80227/CPDR-FFPE-ID-466_2020-01-28_13-26-11/CPDR-FFPE-ID-466.skyd into the system

11 May 2020 16:26:25,679 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80227/CPDR-FFPE-ID-466_2020-01-28_13-26-11.sky.zip into the system

11 May 2020 16:26:25,682 INFO : Starting import from CPDR-FFPE-ID-466_2020-01-28_13-26-11.sky.zip

11 May 2020 16:26:25,689 INFO : Starting to import Skyline document from CPDR-FFPE-ID-466_2020-01-28_13-26-11.sky.zip

11 May 2020 16:26:25,697 INFO : Expanding CPDR-FFPE-ID-466.skyd

11 May 2020 16:26:25,877 INFO : Expanding CPDR-FFPE-ID-466.sky.view

11 May 2020 16:26:25,878 INFO : Expanding CPDR-FFPE-ID-466.sky

11 May 2020 16:26:25,886 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:26:25,889 INFO : 6% Done

11 May 2020 16:26:26,109 INFO : Inserting ANXA2

11 May 2020 16:26:26,116 INFO : 13% Done

11 May 2020 16:26:26,179 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:26,180 INFO : Inserting CAMKK2

11 May 2020 16:26:26,182 INFO : 19% Done

11 May 2020 16:26:26,244 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:26,244 INFO : Inserting CCND1

11 May 2020 16:26:26,247 INFO : 27% Done

11 May 2020 16:26:26,342 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:26,343 INFO : Inserting EGFR

11 May 2020 16:26:26,345 INFO : 31% Done

11 May 2020 16:26:26,392 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:26,392 INFO : Inserting ERG_pan

11 May 2020 16:26:26,394 INFO : 37% Done

11 May 2020 16:26:26,471 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:26,471 INFO : Inserting FOLH1

11 May 2020 16:26:26,473 INFO : 41% Done

11 May 2020 16:26:26,519 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:26,519 INFO : Inserting MMP9

11 May 2020 16:26:26,522 INFO : 50% Done

11 May 2020 16:26:26,605 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:26,605 INFO : Inserting MUC1

11 May 2020 16:26:26,607 INFO : 53% Done

11 May 2020 16:26:26,652 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:26,652 INFO : Inserting NCOA2

11 May 2020 16:26:26,654 INFO : 59% Done

11 May 2020 16:26:26,709 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:26,709 INFO : Inserting PSA

11 May 2020 16:26:26,711 INFO : 66% Done

11 May 2020 16:26:26,790 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:26,790 INFO : Inserting SMAD4

11 May 2020 16:26:26,792 INFO : 70% Done

11 May 2020 16:26:26,843 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:26,843 INFO : 72% Done

11 May 2020 16:26:26,843 INFO : Inserting SPINK1

11 May 2020 16:26:26,846 INFO : 78% Done

11 May 2020 16:26:26,929 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:26,929 INFO : Inserting SPRC

11 May 2020 16:26:26,931 INFO : 82% Done

11 May 2020 16:26:26,991 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:26,991 INFO : Inserting TFF3

11 May 2020 16:26:26,994 INFO : 91% Done

11 May 2020 16:26:27,074 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:27,074 INFO : Inserting TGFB1

11 May 2020 16:26:27,076 INFO : 93% Done

11 May 2020 16:26:27,107 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:27,107 INFO : 94% Done

11 May 2020 16:26:27,107 INFO : Inserting VEGFA

11 May 2020 16:26:27,109 INFO : 98% Done

11 May 2020 16:26:27,172 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:27,172 INFO : Done parsing Skyline document.

11 May 2020 16:26:27,174 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:26:27,200 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:26:27,248 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:26:27,266 INFO : Cleaning up temp tables

11 May 2020 16:26:27,738 INFO : Completed import of Skyline document from CPDR-FFPE-ID-466_2020-01-28_13-26-11.sky.zip

11 May 2020 16:26:27,740 INFO : 100% Done

11 May 2020 16:26:27,752 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80227/CPDR-FFPE-ID-466_2020-01-28_13-26-11.sky.zip into the system

11 May 2020 16:26:27,752 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80258/CPDR-FFPE-ID-571_2020-01-28_13-35-00/CPDR-FFPE-ID-571.skyd into the system

11 May 2020 16:26:27,753 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80258/CPDR-FFPE-ID-571_2020-01-28_13-35-00/CPDR-FFPE-ID-571.skyd into the system

11 May 2020 16:26:27,753 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80258/CPDR-FFPE-ID-571_2020-01-28_13-35-00.sky.zip into the system

11 May 2020 16:26:27,757 INFO : Starting import from CPDR-FFPE-ID-571_2020-01-28_13-35-00.sky.zip

11 May 2020 16:26:27,764 INFO : Starting to import Skyline document from CPDR-FFPE-ID-571_2020-01-28_13-35-00.sky.zip

11 May 2020 16:26:27,772 INFO : Expanding CPDR-FFPE-ID-571.skyd

11 May 2020 16:26:28,023 INFO : Expanding CPDR-FFPE-ID-571.sky.view

11 May 2020 16:26:28,024 INFO : Expanding CPDR-FFPE-ID-571.sky

11 May 2020 16:26:28,033 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:26:28,036 INFO : 6% Done

11 May 2020 16:26:28,258 INFO : Inserting ANXA2

11 May 2020 16:26:28,265 INFO : 15% Done

11 May 2020 16:26:28,382 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:28,382 INFO : Inserting CAMKK2

11 May 2020 16:26:28,385 INFO : 22% Done

11 May 2020 16:26:28,498 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:28,498 INFO : Inserting CCND1

11 May 2020 16:26:28,501 INFO : 29% Done

11 May 2020 16:26:28,606 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:28,606 INFO : Inserting EGFR

11 May 2020 16:26:28,608 INFO : 34% Done

11 May 2020 16:26:28,681 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:28,681 INFO : Inserting ERG_pan

11 May 2020 16:26:28,684 INFO : 41% Done

11 May 2020 16:26:28,774 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:28,774 INFO : Inserting FOLH1

11 May 2020 16:26:28,776 INFO : 43% Done

11 May 2020 16:26:28,825 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:28,825 INFO : Inserting MMP9

11 May 2020 16:26:28,828 INFO : 50% Done

11 May 2020 16:26:28,920 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:28,920 INFO : Inserting MUC1

11 May 2020 16:26:28,922 INFO : 54% Done

11 May 2020 16:26:28,989 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:28,989 INFO : Inserting NCOA2

11 May 2020 16:26:28,991 INFO : 60% Done

11 May 2020 16:26:29,076 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:29,076 INFO : Inserting PSA

11 May 2020 16:26:29,079 INFO : 66% Done

11 May 2020 16:26:29,167 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:29,167 INFO : Inserting SMAD4

11 May 2020 16:26:29,170 INFO : 72% Done

11 May 2020 16:26:29,252 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:29,253 INFO : Inserting SPINK1

11 May 2020 16:26:29,255 INFO : 77% Done

11 May 2020 16:26:29,346 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:29,346 INFO : Inserting SPRC

11 May 2020 16:26:29,349 INFO : 83% Done

11 May 2020 16:26:29,436 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:29,436 INFO : Inserting TFF3

11 May 2020 16:26:29,438 INFO : 90% Done

11 May 2020 16:26:29,527 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:29,528 INFO : Inserting TGFB1

11 May 2020 16:26:29,529 INFO : 92% Done

11 May 2020 16:26:29,573 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:29,574 INFO : Inserting VEGFA

11 May 2020 16:26:29,576 INFO : 98% Done

11 May 2020 16:26:29,658 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:29,658 INFO : Done parsing Skyline document.

11 May 2020 16:26:29,660 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:26:29,689 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:26:29,761 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:26:29,788 INFO : Cleaning up temp tables

11 May 2020 16:26:30,927 INFO : Completed import of Skyline document from CPDR-FFPE-ID-571_2020-01-28_13-35-00.sky.zip

11 May 2020 16:26:30,929 INFO : 100% Done

11 May 2020 16:26:30,940 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80258/CPDR-FFPE-ID-571_2020-01-28_13-35-00.sky.zip into the system

11 May 2020 16:26:30,941 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80260/CPDR-FFPE-ID-673_2020-01-28_13-35-25/CPDR-FFPE-ID-673.skyd into the system

11 May 2020 16:26:30,942 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80260/CPDR-FFPE-ID-673_2020-01-28_13-35-25/CPDR-FFPE-ID-673.skyd into the system

11 May 2020 16:26:30,943 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80260/CPDR-FFPE-ID-673_2020-01-28_13-35-25.sky.zip into the system

11 May 2020 16:26:30,947 INFO : Starting import from CPDR-FFPE-ID-673_2020-01-28_13-35-25.sky.zip

11 May 2020 16:26:30,953 INFO : Starting to import Skyline document from CPDR-FFPE-ID-673_2020-01-28_13-35-25.sky.zip

11 May 2020 16:26:30,962 INFO : Expanding CPDR-FFPE-ID-673.skyd

11 May 2020 16:26:31,182 INFO : Expanding CPDR-FFPE-ID-673.sky.view

11 May 2020 16:26:31,183 INFO : Expanding CPDR-FFPE-ID-673.sky

11 May 2020 16:26:31,192 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:26:31,194 INFO : 5% Done

11 May 2020 16:26:31,344 INFO : Inserting ANXA2

11 May 2020 16:26:31,351 INFO : 14% Done

11 May 2020 16:26:31,457 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:31,457 INFO : Inserting CAMKK2

11 May 2020 16:26:31,460 INFO : 21% Done

11 May 2020 16:26:31,553 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:31,553 INFO : Inserting CCND1

11 May 2020 16:26:31,556 INFO : 27% Done

11 May 2020 16:26:31,668 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:31,668 INFO : Inserting EGFR

11 May 2020 16:26:31,670 INFO : 32% Done

11 May 2020 16:26:31,731 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:31,731 INFO : Inserting ERG_pan

11 May 2020 16:26:31,733 INFO : 40% Done

11 May 2020 16:26:31,832 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:31,832 INFO : Inserting FOLH1

11 May 2020 16:26:31,833 INFO : 42% Done

11 May 2020 16:26:31,877 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:31,877 INFO : Inserting MMP9

11 May 2020 16:26:31,880 INFO : 48% Done

11 May 2020 16:26:31,972 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:31,972 INFO : Inserting MUC1

11 May 2020 16:26:31,974 INFO : 53% Done

11 May 2020 16:26:32,040 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:32,040 INFO : Inserting NCOA2

11 May 2020 16:26:32,042 INFO : 58% Done

11 May 2020 16:26:32,117 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:32,117 INFO : Inserting PSA

11 May 2020 16:26:32,119 INFO : 65% Done

11 May 2020 16:26:32,211 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:32,211 INFO : Inserting SMAD4

11 May 2020 16:26:32,213 INFO : 70% Done

11 May 2020 16:26:32,285 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:32,285 INFO : Inserting SPINK1

11 May 2020 16:26:32,288 INFO : 75% Done

11 May 2020 16:26:32,373 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:32,373 INFO : Inserting SPRC

11 May 2020 16:26:32,375 INFO : 82% Done

11 May 2020 16:26:32,477 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:32,477 INFO : Inserting TFF3

11 May 2020 16:26:32,479 INFO : 89% Done

11 May 2020 16:26:32,577 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:32,577 INFO : Inserting TGFB1

11 May 2020 16:26:32,579 INFO : 91% Done

11 May 2020 16:26:32,632 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:32,632 INFO : Inserting VEGFA

11 May 2020 16:26:32,635 INFO : 98% Done

11 May 2020 16:26:32,737 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:32,737 INFO : Done parsing Skyline document.

11 May 2020 16:26:32,739 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:26:32,767 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:26:32,829 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:26:32,853 INFO : Cleaning up temp tables

11 May 2020 16:26:33,396 INFO : Completed import of Skyline document from CPDR-FFPE-ID-673_2020-01-28_13-35-25.sky.zip

11 May 2020 16:26:33,398 INFO : 100% Done

11 May 2020 16:26:33,409 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80260/CPDR-FFPE-ID-673_2020-01-28_13-35-25.sky.zip into the system

11 May 2020 16:26:33,410 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80262/CPDR-FFPE-ID-545_2020-01-28_13-35-49/CPDR-FFPE-ID-545.skyd into the system

11 May 2020 16:26:33,411 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80262/CPDR-FFPE-ID-545_2020-01-28_13-35-49/CPDR-FFPE-ID-545.skyd into the system

11 May 2020 16:26:33,411 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80262/CPDR-FFPE-ID-545_2020-01-28_13-35-49.sky.zip into the system

11 May 2020 16:26:33,415 INFO : Starting import from CPDR-FFPE-ID-545_2020-01-28_13-35-49.sky.zip

11 May 2020 16:26:33,421 INFO : Starting to import Skyline document from CPDR-FFPE-ID-545_2020-01-28_13-35-49.sky.zip

11 May 2020 16:26:33,427 INFO : Expanding CPDR-FFPE-ID-545.skyd

11 May 2020 16:26:33,570 INFO : Expanding CPDR-FFPE-ID-545.sky.view

11 May 2020 16:26:33,570 INFO : Expanding CPDR-FFPE-ID-545.sky

11 May 2020 16:26:33,578 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:26:33,581 INFO : 5% Done

11 May 2020 16:26:33,735 INFO : Inserting ANXA2

11 May 2020 16:26:33,743 INFO : 14% Done

11 May 2020 16:26:33,819 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:33,820 INFO : Inserting CAMKK2

11 May 2020 16:26:33,822 INFO : 20% Done

11 May 2020 16:26:33,892 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:33,892 INFO : Inserting CCND1

11 May 2020 16:26:33,895 INFO : 27% Done

11 May 2020 16:26:33,970 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:33,970 INFO : Inserting EGFR

11 May 2020 16:26:33,972 INFO : 32% Done

11 May 2020 16:26:34,025 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:34,025 INFO : Inserting ERG_pan

11 May 2020 16:26:34,027 INFO : 38% Done

11 May 2020 16:26:34,091 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:34,091 INFO : Inserting FOLH1

11 May 2020 16:26:34,093 INFO : 41% Done

11 May 2020 16:26:34,133 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:34,133 INFO : Inserting MMP9

11 May 2020 16:26:34,135 INFO : 48% Done

11 May 2020 16:26:34,198 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:34,198 INFO : Inserting MUC1

11 May 2020 16:26:34,200 INFO : 52% Done

11 May 2020 16:26:34,287 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:34,288 INFO : Inserting NCOA2

11 May 2020 16:26:34,290 INFO : 59% Done

11 May 2020 16:26:34,354 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:34,354 INFO : Inserting PSA

11 May 2020 16:26:34,356 INFO : 65% Done

11 May 2020 16:26:34,417 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:34,417 INFO : Inserting SMAD4

11 May 2020 16:26:34,419 INFO : 70% Done

11 May 2020 16:26:34,473 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:34,473 INFO : Inserting SPINK1

11 May 2020 16:26:34,475 INFO : 75% Done

11 May 2020 16:26:34,545 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:34,545 INFO : Inserting SPRC

11 May 2020 16:26:34,547 INFO : 81% Done

11 May 2020 16:26:34,617 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:34,617 INFO : Inserting TFF3

11 May 2020 16:26:34,619 INFO : 87% Done

11 May 2020 16:26:34,683 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:34,683 INFO : Inserting TGFB1

11 May 2020 16:26:34,685 INFO : 92% Done

11 May 2020 16:26:34,722 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:34,722 INFO : Inserting VEGFA

11 May 2020 16:26:34,725 INFO : 98% Done

11 May 2020 16:26:34,796 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:34,796 INFO : Done parsing Skyline document.

11 May 2020 16:26:34,798 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:26:34,823 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:26:34,882 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:26:34,905 INFO : Cleaning up temp tables

11 May 2020 16:26:34,920 INFO : Completed import of Skyline document from CPDR-FFPE-ID-545_2020-01-28_13-35-49.sky.zip

11 May 2020 16:26:34,921 INFO : 100% Done

11 May 2020 16:26:34,933 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80262/CPDR-FFPE-ID-545_2020-01-28_13-35-49.sky.zip into the system

11 May 2020 16:26:34,933 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80376/CPDR-FFPE-ID-691_2020-01-29_12-20-41/CPDR-FFPE-ID-691.skyd into the system

11 May 2020 16:26:34,934 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80376/CPDR-FFPE-ID-691_2020-01-29_12-20-41/CPDR-FFPE-ID-691.skyd into the system

11 May 2020 16:26:34,934 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80376/CPDR-FFPE-ID-691_2020-01-29_12-20-41.sky.zip into the system

11 May 2020 16:26:34,938 INFO : Starting import from CPDR-FFPE-ID-691_2020-01-29_12-20-41.sky.zip

11 May 2020 16:26:34,945 INFO : Starting to import Skyline document from CPDR-FFPE-ID-691_2020-01-29_12-20-41.sky.zip

11 May 2020 16:26:34,952 INFO : Expanding CPDR-FFPE-ID-691.skyd

11 May 2020 16:26:35,152 INFO : Expanding CPDR-FFPE-ID-691.sky.view

11 May 2020 16:26:35,153 INFO : Expanding CPDR-FFPE-ID-691.sky

11 May 2020 16:26:35,162 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:26:35,165 INFO : 5% Done

11 May 2020 16:26:35,338 INFO : Inserting ANXA2

11 May 2020 16:26:35,346 INFO : 14% Done

11 May 2020 16:26:35,454 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:35,455 INFO : Inserting CAMKK2

11 May 2020 16:26:35,458 INFO : 21% Done

11 May 2020 16:26:35,553 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:35,553 INFO : Inserting CCND1

11 May 2020 16:26:35,555 INFO : 26% Done

11 May 2020 16:26:35,625 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:35,625 INFO : Inserting EGFR

11 May 2020 16:26:35,628 INFO : 32% Done

11 May 2020 16:26:35,702 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:35,702 INFO : 34% Done

11 May 2020 16:26:35,702 INFO : Inserting ERG_pan

11 May 2020 16:26:35,705 INFO : 41% Done

11 May 2020 16:26:35,806 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:35,806 INFO : Inserting FOLH1

11 May 2020 16:26:35,808 INFO : 46% Done

11 May 2020 16:26:35,857 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:35,857 INFO : Inserting MMP9

11 May 2020 16:26:35,859 INFO : 53% Done

11 May 2020 16:26:35,954 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:35,955 INFO : Inserting MUC1

11 May 2020 16:26:35,957 INFO : 59% Done

11 May 2020 16:26:36,025 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:36,026 INFO : Inserting NCOA2

11 May 2020 16:26:36,028 INFO : 66% Done

11 May 2020 16:26:36,113 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:36,114 INFO : Inserting PSA

11 May 2020 16:26:36,116 INFO : 71% Done

11 May 2020 16:26:36,181 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:36,181 INFO : Inserting SMAD4

11 May 2020 16:26:36,183 INFO : 76% Done

11 May 2020 16:26:36,260 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:36,261 INFO : Inserting SPINK1

11 May 2020 16:26:36,263 INFO : 79% Done

11 May 2020 16:26:36,325 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:36,325 INFO : 81% Done

11 May 2020 16:26:36,325 INFO : Inserting SPRC

11 May 2020 16:26:36,327 INFO : 84% Done

11 May 2020 16:26:36,387 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:36,387 INFO : Inserting TFF3

11 May 2020 16:26:36,389 INFO : 89% Done

11 May 2020 16:26:36,454 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:36,454 INFO : Inserting TGFB1

11 May 2020 16:26:36,456 INFO : 92% Done

11 May 2020 16:26:36,479 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:36,480 INFO : Inserting VEGFA

11 May 2020 16:26:36,482 INFO : 98% Done

11 May 2020 16:26:36,575 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:36,575 INFO : Done parsing Skyline document.

11 May 2020 16:26:36,577 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:26:36,606 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:26:36,671 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:26:36,695 INFO : Cleaning up temp tables

11 May 2020 16:26:36,706 INFO : Completed import of Skyline document from CPDR-FFPE-ID-691_2020-01-29_12-20-41.sky.zip

11 May 2020 16:26:36,707 INFO : 100% Done

11 May 2020 16:26:36,718 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80376/CPDR-FFPE-ID-691_2020-01-29_12-20-41.sky.zip into the system

11 May 2020 16:26:36,719 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80387/CPDR-FFPE-ID-746_2020-01-29_12-23-08/CPDR-FFPE-ID-746.skyd into the system

11 May 2020 16:26:36,720 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80387/CPDR-FFPE-ID-746_2020-01-29_12-23-08/CPDR-FFPE-ID-746.skyd into the system

11 May 2020 16:26:36,720 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80387/CPDR-FFPE-ID-746_2020-01-29_12-23-08.sky.zip into the system

11 May 2020 16:26:36,723 INFO : Starting import from CPDR-FFPE-ID-746_2020-01-29_12-23-08.sky.zip

11 May 2020 16:26:36,730 INFO : Starting to import Skyline document from CPDR-FFPE-ID-746_2020-01-29_12-23-08.sky.zip

11 May 2020 16:26:36,737 INFO : Expanding CPDR-FFPE-ID-746.skyd

11 May 2020 16:26:36,959 INFO : Expanding CPDR-FFPE-ID-746.sky.view

11 May 2020 16:26:36,960 INFO : Expanding CPDR-FFPE-ID-746.sky

11 May 2020 16:26:36,969 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:26:36,972 INFO : 6% Done

11 May 2020 16:26:37,123 INFO : Inserting ANXA2

11 May 2020 16:26:37,131 INFO : 13% Done

11 May 2020 16:26:37,229 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:37,229 INFO : Inserting CAMKK2

11 May 2020 16:26:37,232 INFO : 21% Done

11 May 2020 16:26:37,340 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:37,340 INFO : Inserting CCND1

11 May 2020 16:26:37,343 INFO : 27% Done

11 May 2020 16:26:37,428 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:37,428 INFO : Inserting EGFR

11 May 2020 16:26:37,431 INFO : 32% Done

11 May 2020 16:26:37,523 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:37,523 INFO : Inserting ERG_pan

11 May 2020 16:26:37,526 INFO : 41% Done

11 May 2020 16:26:37,646 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:37,646 INFO : Inserting FOLH1

11 May 2020 16:26:37,649 INFO : 45% Done

11 May 2020 16:26:37,707 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:37,707 INFO : Inserting MMP9

11 May 2020 16:26:37,710 INFO : 55% Done

11 May 2020 16:26:37,839 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:37,839 INFO : Inserting MUC1

11 May 2020 16:26:37,842 INFO : 60% Done

11 May 2020 16:26:37,923 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:37,924 INFO : Inserting NCOA2

11 May 2020 16:26:37,926 INFO : 65% Done

11 May 2020 16:26:37,996 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:37,997 INFO : Inserting PSA

11 May 2020 16:26:37,999 INFO : 70% Done

11 May 2020 16:26:38,091 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:38,091 INFO : Inserting SMAD4

11 May 2020 16:26:38,094 INFO : 75% Done

11 May 2020 16:26:38,174 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:38,174 INFO : Inserting SPINK1

11 May 2020 16:26:38,177 INFO : 79% Done

11 May 2020 16:26:38,245 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:38,245 INFO : Inserting SPRC

11 May 2020 16:26:38,248 INFO : 84% Done

11 May 2020 16:26:38,324 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:38,324 INFO : Inserting TFF3

11 May 2020 16:26:38,326 INFO : 89% Done

11 May 2020 16:26:38,422 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:38,422 INFO : Inserting TGFB1

11 May 2020 16:26:38,424 INFO : 91% Done

11 May 2020 16:26:38,454 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:38,454 INFO : 92% Done

11 May 2020 16:26:38,455 INFO : Inserting VEGFA

11 May 2020 16:26:38,457 INFO : 98% Done

11 May 2020 16:26:38,566 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:38,566 INFO : Done parsing Skyline document.

11 May 2020 16:26:38,568 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:26:38,598 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:26:38,661 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:26:38,685 INFO : Cleaning up temp tables

11 May 2020 16:26:39,170 INFO : Completed import of Skyline document from CPDR-FFPE-ID-746_2020-01-29_12-23-08.sky.zip

11 May 2020 16:26:39,171 INFO : 100% Done

11 May 2020 16:26:39,183 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80387/CPDR-FFPE-ID-746_2020-01-29_12-23-08.sky.zip into the system

11 May 2020 16:26:39,183 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80389/CPDR-FFPE-ID-1133_2020-01-29_12-23-35/CPDR-FFPE-ID-1133.skyd into the system

11 May 2020 16:26:39,184 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80389/CPDR-FFPE-ID-1133_2020-01-29_12-23-35/CPDR-FFPE-ID-1133.skyd into the system

11 May 2020 16:26:39,184 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80389/CPDR-FFPE-ID-1133_2020-01-29_12-23-35.sky.zip into the system

11 May 2020 16:26:39,188 INFO : Starting import from CPDR-FFPE-ID-1133_2020-01-29_12-23-35.sky.zip

11 May 2020 16:26:39,195 INFO : Starting to import Skyline document from CPDR-FFPE-ID-1133_2020-01-29_12-23-35.sky.zip

11 May 2020 16:26:39,204 INFO : Expanding CPDR-FFPE-ID-1133.skyd

11 May 2020 16:26:39,478 INFO : Expanding CPDR-FFPE-ID-1133.sky.view

11 May 2020 16:26:39,479 INFO : Expanding CPDR-FFPE-ID-1133.sky

11 May 2020 16:26:39,488 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:26:39,491 INFO : 5% Done

11 May 2020 16:26:39,768 INFO : Inserting ANXA2

11 May 2020 16:26:39,777 INFO : 14% Done

11 May 2020 16:26:39,924 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:39,924 INFO : Inserting CAMKK2

11 May 2020 16:26:39,927 INFO : 23% Done

11 May 2020 16:26:40,080 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:40,080 INFO : Inserting CCND1

11 May 2020 16:26:40,083 INFO : 28% Done

11 May 2020 16:26:40,196 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:40,196 INFO : Inserting EGFR

11 May 2020 16:26:40,199 INFO : 34% Done

11 May 2020 16:26:40,312 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:40,312 INFO : Inserting ERG_pan

11 May 2020 16:26:40,316 INFO : 41% Done

11 May 2020 16:26:40,435 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:40,435 INFO : Inserting FOLH1

11 May 2020 16:26:40,437 INFO : 45% Done

11 May 2020 16:26:40,497 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:40,497 INFO : Inserting MMP9

11 May 2020 16:26:40,500 INFO : 53% Done

11 May 2020 16:26:40,628 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:40,629 INFO : Inserting MUC1

11 May 2020 16:26:40,631 INFO : 58% Done

11 May 2020 16:26:40,712 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:40,712 INFO : Inserting NCOA2

11 May 2020 16:26:40,716 INFO : 65% Done

11 May 2020 16:26:40,857 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:40,857 INFO : Inserting PSA

11 May 2020 16:26:40,860 INFO : 69% Done

11 May 2020 16:26:40,939 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:40,939 INFO : Inserting SMAD4

11 May 2020 16:26:40,943 INFO : 74% Done

11 May 2020 16:26:41,076 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:41,076 INFO : Inserting SPINK1

11 May 2020 16:26:41,081 INFO : 80% Done

11 May 2020 16:26:41,172 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:41,172 INFO : Inserting SPRC

11 May 2020 16:26:41,176 INFO : 84% Done

11 May 2020 16:26:41,276 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:41,277 INFO : 85% Done

11 May 2020 16:26:41,277 INFO : Inserting TFF3

11 May 2020 16:26:41,280 INFO : 89% Done

11 May 2020 16:26:41,351 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:41,351 INFO : Inserting TGFB1

11 May 2020 16:26:41,353 INFO : 90% Done

11 May 2020 16:26:41,374 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:41,374 INFO : Inserting VEGFA

11 May 2020 16:26:41,377 INFO : 98% Done

11 May 2020 16:26:41,522 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:41,522 INFO : Done parsing Skyline document.

11 May 2020 16:26:41,525 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:26:41,556 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:26:41,632 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:26:41,662 INFO : Cleaning up temp tables

11 May 2020 16:26:42,153 INFO : Completed import of Skyline document from CPDR-FFPE-ID-1133_2020-01-29_12-23-35.sky.zip

11 May 2020 16:26:42,155 INFO : 100% Done

11 May 2020 16:26:42,167 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80389/CPDR-FFPE-ID-1133_2020-01-29_12-23-35.sky.zip into the system

11 May 2020 16:26:42,167 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80406/CPDR-FFPE-ID-1019_2020-01-29_12-31-52/CPDR-FFPE-ID-1019.skyd into the system

11 May 2020 16:26:42,168 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80406/CPDR-FFPE-ID-1019_2020-01-29_12-31-52/CPDR-FFPE-ID-1019.skyd into the system

11 May 2020 16:26:42,168 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80406/CPDR-FFPE-ID-1019_2020-01-29_12-31-52.sky.zip into the system

11 May 2020 16:26:42,172 INFO : Starting import from CPDR-FFPE-ID-1019_2020-01-29_12-31-52.sky.zip

11 May 2020 16:26:42,178 INFO : Starting to import Skyline document from CPDR-FFPE-ID-1019_2020-01-29_12-31-52.sky.zip

11 May 2020 16:26:42,193 INFO : Expanding CPDR-FFPE-ID-1019.skyd

11 May 2020 16:26:42,577 INFO : Expanding CPDR-FFPE-ID-1019.sky.view

11 May 2020 16:26:42,578 INFO : Expanding CPDR-FFPE-ID-1019.sky

11 May 2020 16:26:42,588 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:26:42,591 INFO : 6% Done

11 May 2020 16:26:42,849 INFO : Inserting ANXA2

11 May 2020 16:26:42,858 INFO : 13% Done

11 May 2020 16:26:43,023 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:43,023 INFO : Inserting CAMKK2

11 May 2020 16:26:43,027 INFO : 21% Done

11 May 2020 16:26:43,194 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:43,195 INFO : Inserting CCND1

11 May 2020 16:26:43,199 INFO : 27% Done

11 May 2020 16:26:43,355 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:43,356 INFO : Inserting EGFR

11 May 2020 16:26:43,360 INFO : 33% Done

11 May 2020 16:26:43,484 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:43,484 INFO : Inserting ERG_pan

11 May 2020 16:26:43,489 INFO : 39% Done

11 May 2020 16:26:43,625 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:43,625 INFO : Inserting FOLH1

11 May 2020 16:26:43,628 INFO : 42% Done

11 May 2020 16:26:43,703 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:43,703 INFO : Inserting MMP9

11 May 2020 16:26:43,709 INFO : 50% Done

11 May 2020 16:26:43,872 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:43,872 INFO : Inserting MUC1

11 May 2020 16:26:43,875 INFO : 54% Done

11 May 2020 16:26:43,978 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:43,978 INFO : Inserting NCOA2

11 May 2020 16:26:43,982 INFO : 61% Done

11 May 2020 16:26:44,128 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:44,128 INFO : Inserting PSA

11 May 2020 16:26:44,133 INFO : 67% Done

11 May 2020 16:26:44,252 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:44,252 INFO : Inserting SMAD4

11 May 2020 16:26:44,257 INFO : 73% Done

11 May 2020 16:26:44,409 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:44,409 INFO : Inserting SPINK1

11 May 2020 16:26:44,414 INFO : 78% Done

11 May 2020 16:26:45,289 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:45,289 INFO : Inserting SPRC

11 May 2020 16:26:45,292 INFO : 82% Done

11 May 2020 16:26:45,401 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:45,402 INFO : 83% Done

11 May 2020 16:26:45,402 INFO : Inserting TFF3

11 May 2020 16:26:45,405 INFO : 88% Done

11 May 2020 16:26:45,520 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:45,520 INFO : Inserting TGFB1

11 May 2020 16:26:45,523 INFO : 91% Done

11 May 2020 16:26:45,577 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:45,577 INFO : Inserting VEGFA

11 May 2020 16:26:45,581 INFO : 98% Done

11 May 2020 16:26:45,750 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:45,750 INFO : Done parsing Skyline document.

11 May 2020 16:26:45,753 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:26:45,788 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:26:45,894 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:26:45,934 INFO : Cleaning up temp tables

11 May 2020 16:26:46,415 INFO : Completed import of Skyline document from CPDR-FFPE-ID-1019_2020-01-29_12-31-52.sky.zip

11 May 2020 16:26:46,416 INFO : 100% Done

11 May 2020 16:26:46,429 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80406/CPDR-FFPE-ID-1019_2020-01-29_12-31-52.sky.zip into the system

11 May 2020 16:26:46,429 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80410/CPDR-FFPE-ID-1247_2020-01-29_12-33-19/CPDR-FFPE-ID-1247.skyd into the system

11 May 2020 16:26:46,431 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80410/CPDR-FFPE-ID-1247_2020-01-29_12-33-19/CPDR-FFPE-ID-1247.skyd into the system

11 May 2020 16:26:46,431 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80410/CPDR-FFPE-ID-1247_2020-01-29_12-33-19.sky.zip into the system

11 May 2020 16:26:46,435 INFO : Starting import from CPDR-FFPE-ID-1247_2020-01-29_12-33-19.sky.zip

11 May 2020 16:26:46,442 INFO : Starting to import Skyline document from CPDR-FFPE-ID-1247_2020-01-29_12-33-19.sky.zip

11 May 2020 16:26:46,451 INFO : Expanding CPDR-FFPE-ID-1247.skyd

11 May 2020 16:26:46,723 INFO : Expanding CPDR-FFPE-ID-1247.sky.view

11 May 2020 16:26:46,724 INFO : Expanding CPDR-FFPE-ID-1247.sky

11 May 2020 16:26:46,733 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:26:46,736 INFO : 5% Done

11 May 2020 16:26:46,949 INFO : Inserting ANXA2

11 May 2020 16:26:46,957 INFO : 12% Done

11 May 2020 16:26:47,050 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:47,050 INFO : Inserting CAMKK2

11 May 2020 16:26:47,053 INFO : 20% Done

11 May 2020 16:26:47,189 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:47,189 INFO : Inserting CCND1

11 May 2020 16:26:47,192 INFO : 26% Done

11 May 2020 16:26:47,304 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:47,305 INFO : Inserting EGFR

11 May 2020 16:26:47,307 INFO : 32% Done

11 May 2020 16:26:47,413 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:47,413 INFO : Inserting ERG_pan

11 May 2020 16:26:47,416 INFO : 38% Done

11 May 2020 16:26:47,520 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:47,520 INFO : Inserting FOLH1

11 May 2020 16:26:47,523 INFO : 43% Done

11 May 2020 16:26:47,601 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:47,601 INFO : 44% Done

11 May 2020 16:26:47,601 INFO : Inserting MMP9

11 May 2020 16:26:47,604 INFO : 51% Done

11 May 2020 16:26:47,748 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:47,748 INFO : 52% Done

11 May 2020 16:26:47,748 INFO : Inserting MUC1

11 May 2020 16:26:47,751 INFO : 58% Done

11 May 2020 16:26:47,858 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:47,859 INFO : Inserting NCOA2

11 May 2020 16:26:47,861 INFO : 65% Done

11 May 2020 16:26:47,976 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:47,976 INFO : Inserting PSA

11 May 2020 16:26:47,978 INFO : 69% Done

11 May 2020 16:26:48,048 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:48,048 INFO : Inserting SMAD4

11 May 2020 16:26:48,051 INFO : 74% Done

11 May 2020 16:26:48,145 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:48,145 INFO : Inserting SPINK1

11 May 2020 16:26:48,148 INFO : 79% Done

11 May 2020 16:26:48,252 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:48,252 INFO : Inserting SPRC

11 May 2020 16:26:48,255 INFO : 84% Done

11 May 2020 16:26:48,353 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:48,353 INFO : Inserting TFF3

11 May 2020 16:26:48,356 INFO : 89% Done

11 May 2020 16:26:48,430 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:48,430 INFO : Inserting TGFB1

11 May 2020 16:26:48,432 INFO : 91% Done

11 May 2020 16:26:48,470 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:48,471 INFO : Inserting VEGFA

11 May 2020 16:26:48,474 INFO : 98% Done

11 May 2020 16:26:48,633 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:48,633 INFO : Done parsing Skyline document.

11 May 2020 16:26:48,636 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:26:48,666 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:26:48,744 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:26:48,774 INFO : Cleaning up temp tables

11 May 2020 16:26:49,223 INFO : Completed import of Skyline document from CPDR-FFPE-ID-1247_2020-01-29_12-33-19.sky.zip

11 May 2020 16:26:49,224 INFO : 100% Done

11 May 2020 16:26:49,235 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80410/CPDR-FFPE-ID-1247_2020-01-29_12-33-19.sky.zip into the system

11 May 2020 16:26:49,235 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80419/CPDR-FFPE-ID-861_2020-01-29_12-35-18/CPDR-FFPE-ID-861.skyd into the system

11 May 2020 16:26:49,236 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80419/CPDR-FFPE-ID-861_2020-01-29_12-35-18/CPDR-FFPE-ID-861.skyd into the system

11 May 2020 16:26:49,236 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80419/CPDR-FFPE-ID-861_2020-01-29_12-35-18.sky.zip into the system

11 May 2020 16:26:49,240 INFO : Starting import from CPDR-FFPE-ID-861_2020-01-29_12-35-18.sky.zip

11 May 2020 16:26:49,246 INFO : Starting to import Skyline document from CPDR-FFPE-ID-861_2020-01-29_12-35-18.sky.zip

11 May 2020 16:26:49,256 INFO : Expanding CPDR-FFPE-ID-861.skyd

11 May 2020 16:26:49,475 INFO : Expanding CPDR-FFPE-ID-861.sky.view

11 May 2020 16:26:49,475 INFO : Expanding CPDR-FFPE-ID-861.sky

11 May 2020 16:26:49,484 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:26:49,487 INFO : 6% Done

11 May 2020 16:26:49,717 INFO : Inserting ANXA2

11 May 2020 16:26:49,726 INFO : 14% Done

11 May 2020 16:26:49,840 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:49,840 INFO : Inserting CAMKK2

11 May 2020 16:26:49,843 INFO : 23% Done

11 May 2020 16:26:49,965 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:49,965 INFO : Inserting CCND1

11 May 2020 16:26:49,969 INFO : 28% Done

11 May 2020 16:26:50,076 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:50,076 INFO : Inserting EGFR

11 May 2020 16:26:50,079 INFO : 34% Done

11 May 2020 16:26:50,176 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:50,177 INFO : Inserting ERG_pan

11 May 2020 16:26:50,179 INFO : 40% Done

11 May 2020 16:26:50,278 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:50,279 INFO : 41% Done

11 May 2020 16:26:50,279 INFO : Inserting FOLH1

11 May 2020 16:26:50,281 INFO : 44% Done

11 May 2020 16:26:50,349 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:50,350 INFO : Inserting MMP9

11 May 2020 16:26:50,353 INFO : 52% Done

11 May 2020 16:26:50,473 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:50,474 INFO : Inserting MUC1

11 May 2020 16:26:50,476 INFO : 58% Done

11 May 2020 16:26:50,566 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:50,566 INFO : Inserting NCOA2

11 May 2020 16:26:50,569 INFO : 64% Done

11 May 2020 16:26:50,692 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:50,692 INFO : Inserting PSA

11 May 2020 16:26:50,695 INFO : 69% Done

11 May 2020 16:26:50,765 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:50,765 INFO : Inserting SMAD4

11 May 2020 16:26:50,768 INFO : 74% Done

11 May 2020 16:26:50,852 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:50,853 INFO : Inserting SPINK1

11 May 2020 16:26:50,855 INFO : 79% Done

11 May 2020 16:26:50,944 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:50,944 INFO : Inserting SPRC

11 May 2020 16:26:50,946 INFO : 85% Done

11 May 2020 16:26:51,051 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:51,051 INFO : Inserting TFF3

11 May 2020 16:26:51,053 INFO : 88% Done

11 May 2020 16:26:51,121 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:51,122 INFO : 89% Done

11 May 2020 16:26:51,122 INFO : Inserting TGFB1

11 May 2020 16:26:51,123 INFO : 91% Done

11 May 2020 16:26:51,157 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:51,158 INFO : Inserting VEGFA

11 May 2020 16:26:51,160 INFO : 98% Done

11 May 2020 16:26:51,284 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:51,284 INFO : Done parsing Skyline document.

11 May 2020 16:26:51,287 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:26:51,315 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:26:51,386 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:26:51,413 INFO : Cleaning up temp tables

11 May 2020 16:26:51,429 INFO : Completed import of Skyline document from CPDR-FFPE-ID-861_2020-01-29_12-35-18.sky.zip

11 May 2020 16:26:51,430 INFO : 100% Done

11 May 2020 16:26:51,442 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80419/CPDR-FFPE-ID-861_2020-01-29_12-35-18.sky.zip into the system

11 May 2020 16:26:51,442 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80427/CPDR-FFPE-ID-1255_2020-01-29_12-37-30/CPDR-FFPE-ID-1255.skyd into the system

11 May 2020 16:26:51,444 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80427/CPDR-FFPE-ID-1255_2020-01-29_12-37-30/CPDR-FFPE-ID-1255.skyd into the system

11 May 2020 16:26:51,444 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80427/CPDR-FFPE-ID-1255_2020-01-29_12-37-30.sky.zip into the system

11 May 2020 16:26:51,448 INFO : Starting import from CPDR-FFPE-ID-1255_2020-01-29_12-37-30.sky.zip

11 May 2020 16:26:51,456 INFO : Starting to import Skyline document from CPDR-FFPE-ID-1255_2020-01-29_12-37-30.sky.zip

11 May 2020 16:26:51,469 INFO : Expanding CPDR-FFPE-ID-1255.skyd

11 May 2020 16:26:51,795 INFO : Expanding CPDR-FFPE-ID-1255.sky.view

11 May 2020 16:26:51,796 INFO : Expanding CPDR-FFPE-ID-1255.sky

11 May 2020 16:26:51,805 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:26:51,808 INFO : 5% Done

11 May 2020 16:26:52,035 INFO : Inserting ANXA2

11 May 2020 16:26:52,042 INFO : 12% Done

11 May 2020 16:26:52,119 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:52,119 INFO : Inserting CAMKK2

11 May 2020 16:26:52,122 INFO : 19% Done

11 May 2020 16:26:52,223 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:52,223 INFO : Inserting CCND1

11 May 2020 16:26:52,225 INFO : 25% Done

11 May 2020 16:26:52,315 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:52,315 INFO : Inserting EGFR

11 May 2020 16:26:52,318 INFO : 31% Done

11 May 2020 16:26:52,409 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:52,409 INFO : Inserting ERG_pan

11 May 2020 16:26:52,412 INFO : 38% Done

11 May 2020 16:26:52,498 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:52,498 INFO : Inserting FOLH1

11 May 2020 16:26:52,500 INFO : 42% Done

11 May 2020 16:26:52,557 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:52,558 INFO : Inserting MMP9

11 May 2020 16:26:52,561 INFO : 50% Done

11 May 2020 16:26:52,687 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:52,687 INFO : Inserting MUC1

11 May 2020 16:26:52,690 INFO : 57% Done

11 May 2020 16:26:52,784 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:52,785 INFO : Inserting NCOA2

11 May 2020 16:26:52,787 INFO : 63% Done

11 May 2020 16:26:52,896 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:52,896 INFO : Inserting PSA

11 May 2020 16:26:52,899 INFO : 68% Done

11 May 2020 16:26:52,980 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:52,980 INFO : Inserting SMAD4

11 May 2020 16:26:52,983 INFO : 73% Done

11 May 2020 16:26:53,073 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:53,073 INFO : Inserting SPINK1

11 May 2020 16:26:53,076 INFO : 78% Done

11 May 2020 16:26:53,160 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:53,160 INFO : Inserting SPRC

11 May 2020 16:26:53,163 INFO : 83% Done

11 May 2020 16:26:53,306 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:53,306 INFO : Inserting TFF3

11 May 2020 16:26:53,309 INFO : 88% Done

11 May 2020 16:26:53,391 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:53,392 INFO : Inserting TGFB1

11 May 2020 16:26:53,394 INFO : 91% Done

11 May 2020 16:26:53,436 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:53,437 INFO : Inserting VEGFA

11 May 2020 16:26:53,439 INFO : 98% Done

11 May 2020 16:26:53,574 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:53,574 INFO : Done parsing Skyline document.

11 May 2020 16:26:53,577 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:26:53,607 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:26:53,690 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:26:53,719 INFO : Cleaning up temp tables

11 May 2020 16:26:54,172 INFO : Completed import of Skyline document from CPDR-FFPE-ID-1255_2020-01-29_12-37-30.sky.zip

11 May 2020 16:26:54,174 INFO : 100% Done

11 May 2020 16:26:54,186 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80427/CPDR-FFPE-ID-1255_2020-01-29_12-37-30.sky.zip into the system

11 May 2020 16:26:54,186 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80432/CPDR-FFPE-ID-1402_2020-01-29_12-38-56/CPDR-FFPE-ID-1402.skyd into the system

11 May 2020 16:26:54,187 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80432/CPDR-FFPE-ID-1402_2020-01-29_12-38-56/CPDR-FFPE-ID-1402.skyd into the system

11 May 2020 16:26:54,187 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80432/CPDR-FFPE-ID-1402_2020-01-29_12-38-56.sky.zip into the system

11 May 2020 16:26:54,191 INFO : Starting import from CPDR-FFPE-ID-1402_2020-01-29_12-38-56.sky.zip

11 May 2020 16:26:54,198 INFO : Starting to import Skyline document from CPDR-FFPE-ID-1402_2020-01-29_12-38-56.sky.zip

11 May 2020 16:26:54,208 INFO : Expanding CPDR-FFPE-ID-1402.skyd

11 May 2020 16:26:54,468 INFO : Expanding CPDR-FFPE-ID-1402.sky.view

11 May 2020 16:26:54,468 INFO : Expanding CPDR-FFPE-ID-1402.sky

11 May 2020 16:26:54,476 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:26:54,479 INFO : 5% Done

11 May 2020 16:26:54,643 INFO : Inserting ANXA2

11 May 2020 16:26:54,650 INFO : 13% Done

11 May 2020 16:26:54,756 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:54,756 INFO : Inserting CAMKK2

11 May 2020 16:26:54,759 INFO : 22% Done

11 May 2020 16:26:54,868 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:54,869 INFO : Inserting CCND1

11 May 2020 16:26:54,871 INFO : 27% Done

11 May 2020 16:26:54,974 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:54,974 INFO : 28% Done

11 May 2020 16:26:54,974 INFO : Inserting EGFR

11 May 2020 16:26:54,976 INFO : 33% Done

11 May 2020 16:26:55,060 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:55,060 INFO : Inserting ERG_pan

11 May 2020 16:26:55,063 INFO : 41% Done

11 May 2020 16:26:55,178 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:55,179 INFO : Inserting FOLH1

11 May 2020 16:26:55,181 INFO : 45% Done

11 May 2020 16:26:55,232 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:55,232 INFO : Inserting MMP9

11 May 2020 16:26:55,235 INFO : 51% Done

11 May 2020 16:26:55,335 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:55,335 INFO : 52% Done

11 May 2020 16:26:55,335 INFO : Inserting MUC1

11 May 2020 16:26:55,337 INFO : 57% Done

11 May 2020 16:26:55,413 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:55,413 INFO : Inserting NCOA2

11 May 2020 16:26:55,416 INFO : 64% Done

11 May 2020 16:26:55,521 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:55,521 INFO : Inserting PSA

11 May 2020 16:26:55,524 INFO : 68% Done

11 May 2020 16:26:55,587 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:55,588 INFO : 69% Done

11 May 2020 16:26:55,588 INFO : Inserting SMAD4

11 May 2020 16:26:55,590 INFO : 74% Done

11 May 2020 16:26:55,678 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:55,678 INFO : Inserting SPINK1

11 May 2020 16:26:55,680 INFO : 79% Done

11 May 2020 16:26:55,755 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:55,756 INFO : Inserting SPRC

11 May 2020 16:26:55,758 INFO : 84% Done

11 May 2020 16:26:55,842 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:55,842 INFO : Inserting TFF3

11 May 2020 16:26:55,844 INFO : 89% Done

11 May 2020 16:26:55,916 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:55,916 INFO : Inserting TGFB1

11 May 2020 16:26:55,918 INFO : 91% Done

11 May 2020 16:26:55,943 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:55,943 INFO : Inserting VEGFA

11 May 2020 16:26:55,946 INFO : 98% Done

11 May 2020 16:26:56,054 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:56,054 INFO : Done parsing Skyline document.

11 May 2020 16:26:56,056 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:26:56,084 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:26:56,148 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:26:56,171 INFO : Cleaning up temp tables

11 May 2020 16:26:56,712 INFO : Completed import of Skyline document from CPDR-FFPE-ID-1402_2020-01-29_12-38-56.sky.zip

11 May 2020 16:26:56,714 INFO : 100% Done

11 May 2020 16:26:56,726 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80432/CPDR-FFPE-ID-1402_2020-01-29_12-38-56.sky.zip into the system

11 May 2020 16:26:56,726 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80434/CPDR-FFPE-ID-803_2020-01-29_12-39-23/CPDR-FFPE-ID-803.skyd into the system

11 May 2020 16:26:56,727 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80434/CPDR-FFPE-ID-803_2020-01-29_12-39-23/CPDR-FFPE-ID-803.skyd into the system

11 May 2020 16:26:56,727 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80434/CPDR-FFPE-ID-803_2020-01-29_12-39-23.sky.zip into the system

11 May 2020 16:26:56,731 INFO : Starting import from CPDR-FFPE-ID-803_2020-01-29_12-39-23.sky.zip

11 May 2020 16:26:56,737 INFO : Starting to import Skyline document from CPDR-FFPE-ID-803_2020-01-29_12-39-23.sky.zip

11 May 2020 16:26:56,750 INFO : Expanding CPDR-FFPE-ID-803.skyd

11 May 2020 16:26:57,094 INFO : Expanding CPDR-FFPE-ID-803.sky.view

11 May 2020 16:26:57,094 INFO : Expanding CPDR-FFPE-ID-803.sky

11 May 2020 16:26:57,105 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:26:57,108 INFO : 4% Done

11 May 2020 16:26:57,358 INFO : 6% Done

11 May 2020 16:26:57,358 INFO : Inserting ANXA2

11 May 2020 16:26:57,367 INFO : 13% Done

11 May 2020 16:26:57,540 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:57,540 INFO : 14% Done

11 May 2020 16:26:57,541 INFO : Inserting CAMKK2

11 May 2020 16:26:57,544 INFO : 21% Done

11 May 2020 16:26:57,712 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:57,712 INFO : Inserting CCND1

11 May 2020 16:26:57,716 INFO : 28% Done

11 May 2020 16:26:57,879 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:57,880 INFO : Inserting EGFR

11 May 2020 16:26:57,883 INFO : 33% Done

11 May 2020 16:26:58,008 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:58,009 INFO : Inserting ERG_pan

11 May 2020 16:26:58,012 INFO : 40% Done

11 May 2020 16:26:58,160 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:58,160 INFO : Inserting FOLH1

11 May 2020 16:26:58,162 INFO : 43% Done

11 May 2020 16:26:58,233 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:58,233 INFO : Inserting MMP9

11 May 2020 16:26:58,237 INFO : 50% Done

11 May 2020 16:26:58,403 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:58,403 INFO : Inserting MUC1

11 May 2020 16:26:58,405 INFO : 54% Done

11 May 2020 16:26:58,505 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:58,505 INFO : Inserting NCOA2

11 May 2020 16:26:58,508 INFO : 62% Done

11 May 2020 16:26:58,681 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:58,682 INFO : Inserting PSA

11 May 2020 16:26:58,684 INFO : 67% Done

11 May 2020 16:26:58,821 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:58,821 INFO : Inserting SMAD4

11 May 2020 16:26:58,824 INFO : 73% Done

11 May 2020 16:26:58,995 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:58,995 INFO : Inserting SPINK1

11 May 2020 16:26:58,999 INFO : 77% Done

11 May 2020 16:26:59,134 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:59,134 INFO : Inserting SPRC

11 May 2020 16:26:59,137 INFO : 83% Done

11 May 2020 16:26:59,262 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:59,262 INFO : 84% Done

11 May 2020 16:26:59,262 INFO : Inserting TFF3

11 May 2020 16:26:59,265 INFO : 88% Done

11 May 2020 16:26:59,377 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:59,377 INFO : Inserting TGFB1

11 May 2020 16:26:59,379 INFO : 91% Done

11 May 2020 16:26:59,433 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:59,433 INFO : Inserting VEGFA

11 May 2020 16:26:59,437 INFO : 98% Done

11 May 2020 16:26:59,600 DEBUG: Total peptides inserted: 1

11 May 2020 16:26:59,600 INFO : Done parsing Skyline document.

11 May 2020 16:26:59,602 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:26:59,636 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:26:59,742 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:26:59,781 INFO : Cleaning up temp tables

11 May 2020 16:26:59,797 INFO : Completed import of Skyline document from CPDR-FFPE-ID-803_2020-01-29_12-39-23.sky.zip

11 May 2020 16:26:59,798 INFO : 100% Done

11 May 2020 16:26:59,811 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80434/CPDR-FFPE-ID-803_2020-01-29_12-39-23.sky.zip into the system

11 May 2020 16:26:59,811 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80448/CPDR-FFPE-ID-1313_2020-01-29_12-45-15/CPDR-FFPE-ID-1313.skyd into the system

11 May 2020 16:26:59,814 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80448/CPDR-FFPE-ID-1313_2020-01-29_12-45-15/CPDR-FFPE-ID-1313.skyd into the system

11 May 2020 16:26:59,814 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80448/CPDR-FFPE-ID-1313_2020-01-29_12-45-15.sky.zip into the system

11 May 2020 16:26:59,818 INFO : Starting import from CPDR-FFPE-ID-1313_2020-01-29_12-45-15.sky.zip

11 May 2020 16:26:59,826 INFO : Starting to import Skyline document from CPDR-FFPE-ID-1313_2020-01-29_12-45-15.sky.zip

11 May 2020 16:26:59,837 INFO : Expanding CPDR-FFPE-ID-1313.skyd

11 May 2020 16:27:00,146 INFO : Expanding CPDR-FFPE-ID-1313.sky.view

11 May 2020 16:27:00,147 INFO : Expanding CPDR-FFPE-ID-1313.sky

11 May 2020 16:27:00,156 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:27:00,159 INFO : 5% Done

11 May 2020 16:27:00,391 INFO : Inserting ANXA2

11 May 2020 16:27:00,400 INFO : 13% Done

11 May 2020 16:27:00,523 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:00,523 INFO : Inserting CAMKK2

11 May 2020 16:27:00,526 INFO : 22% Done

11 May 2020 16:27:00,651 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:00,651 INFO : Inserting CCND1

11 May 2020 16:27:00,654 INFO : 27% Done

11 May 2020 16:27:00,754 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:00,754 INFO : Inserting EGFR

11 May 2020 16:27:00,757 INFO : 33% Done

11 May 2020 16:27:00,852 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:00,852 INFO : Inserting ERG_pan

11 May 2020 16:27:00,855 INFO : 40% Done

11 May 2020 16:27:00,992 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:00,992 INFO : Inserting FOLH1

11 May 2020 16:27:00,994 INFO : 46% Done

11 May 2020 16:27:01,078 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:01,078 INFO : Inserting MMP9

11 May 2020 16:27:01,081 INFO : 54% Done

11 May 2020 16:27:01,209 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:01,209 INFO : Inserting MUC1

11 May 2020 16:27:01,212 INFO : 60% Done

11 May 2020 16:27:01,315 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:01,315 INFO : Inserting NCOA2

11 May 2020 16:27:01,318 INFO : 66% Done

11 May 2020 16:27:01,421 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:01,421 INFO : Inserting PSA

11 May 2020 16:27:01,423 INFO : 71% Done

11 May 2020 16:27:01,497 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:01,497 INFO : Inserting SMAD4

11 May 2020 16:27:01,500 INFO : 76% Done

11 May 2020 16:27:01,583 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:01,583 INFO : Inserting SPINK1

11 May 2020 16:27:01,585 INFO : 81% Done

11 May 2020 16:27:01,670 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:01,670 INFO : Inserting SPRC

11 May 2020 16:27:01,673 INFO : 85% Done

11 May 2020 16:27:01,747 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:01,747 INFO : Inserting TFF3

11 May 2020 16:27:01,749 INFO : 89% Done

11 May 2020 16:27:01,812 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:01,812 INFO : Inserting TGFB1

11 May 2020 16:27:01,814 INFO : 91% Done

11 May 2020 16:27:01,843 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:01,843 INFO : Inserting VEGFA

11 May 2020 16:27:01,846 INFO : 98% Done

11 May 2020 16:27:01,966 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:01,966 INFO : Done parsing Skyline document.

11 May 2020 16:27:01,968 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:27:01,998 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:27:02,078 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:27:02,108 INFO : Cleaning up temp tables

11 May 2020 16:27:02,111 INFO : Completed import of Skyline document from CPDR-FFPE-ID-1313_2020-01-29_12-45-15.sky.zip

11 May 2020 16:27:02,121 INFO : 100% Done

11 May 2020 16:27:02,132 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80448/CPDR-FFPE-ID-1313_2020-01-29_12-45-15.sky.zip into the system

11 May 2020 16:27:02,133 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80449/CPDR-FFPE-ID-1267_2020-01-29_12-45-30/CPDR-FFPE-ID-1267.skyd into the system

11 May 2020 16:27:02,134 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80449/CPDR-FFPE-ID-1267_2020-01-29_12-45-30/CPDR-FFPE-ID-1267.skyd into the system

11 May 2020 16:27:02,134 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80449/CPDR-FFPE-ID-1267_2020-01-29_12-45-30.sky.zip into the system

11 May 2020 16:27:02,138 INFO : Starting import from CPDR-FFPE-ID-1267_2020-01-29_12-45-30.sky.zip

11 May 2020 16:27:02,144 INFO : Starting to import Skyline document from CPDR-FFPE-ID-1267_2020-01-29_12-45-30.sky.zip

11 May 2020 16:27:02,152 INFO : Expanding CPDR-FFPE-ID-1267.skyd

11 May 2020 16:27:02,380 INFO : Expanding CPDR-FFPE-ID-1267.sky.view

11 May 2020 16:27:02,381 INFO : Expanding CPDR-FFPE-ID-1267.sky

11 May 2020 16:27:02,390 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:27:02,393 INFO : 5% Done

11 May 2020 16:27:02,573 INFO : Inserting ANXA2

11 May 2020 16:27:02,581 INFO : 14% Done

11 May 2020 16:27:02,684 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:02,684 INFO : Inserting CAMKK2

11 May 2020 16:27:02,687 INFO : 21% Done

11 May 2020 16:27:02,799 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:02,799 INFO : Inserting CCND1

11 May 2020 16:27:02,801 INFO : 27% Done

11 May 2020 16:27:02,891 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:02,891 INFO : Inserting EGFR

11 May 2020 16:27:02,894 INFO : 33% Done

11 May 2020 16:27:02,976 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:02,976 INFO : Inserting ERG_pan

11 May 2020 16:27:02,979 INFO : 39% Done

11 May 2020 16:27:03,066 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:03,067 INFO : Inserting FOLH1

11 May 2020 16:27:03,069 INFO : 43% Done

11 May 2020 16:27:03,123 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:03,123 INFO : Inserting MMP9

11 May 2020 16:27:03,126 INFO : 51% Done

11 May 2020 16:27:03,246 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:03,246 INFO : Inserting MUC1

11 May 2020 16:27:03,249 INFO : 57% Done

11 May 2020 16:27:03,359 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:03,359 INFO : Inserting NCOA2

11 May 2020 16:27:03,363 INFO : 63% Done

11 May 2020 16:27:03,466 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:03,467 INFO : Inserting PSA

11 May 2020 16:27:03,469 INFO : 68% Done

11 May 2020 16:27:03,546 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:03,546 INFO : Inserting SMAD4

11 May 2020 16:27:03,550 INFO : 73% Done

11 May 2020 16:27:03,667 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:03,667 INFO : Inserting SPINK1

11 May 2020 16:27:03,670 INFO : 79% Done

11 May 2020 16:27:03,755 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:03,755 INFO : Inserting SPRC

11 May 2020 16:27:03,758 INFO : 84% Done

11 May 2020 16:27:03,847 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:03,847 INFO : Inserting TFF3

11 May 2020 16:27:03,850 INFO : 89% Done

11 May 2020 16:27:03,921 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:03,921 INFO : Inserting TGFB1

11 May 2020 16:27:03,923 INFO : 91% Done

11 May 2020 16:27:03,957 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:03,958 INFO : Inserting VEGFA

11 May 2020 16:27:03,960 INFO : 98% Done

11 May 2020 16:27:04,064 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:04,064 INFO : Done parsing Skyline document.

11 May 2020 16:27:04,066 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:27:04,105 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:27:04,200 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:27:04,224 INFO : Cleaning up temp tables

11 May 2020 16:27:04,570 INFO : Completed import of Skyline document from CPDR-FFPE-ID-1267_2020-01-29_12-45-30.sky.zip

11 May 2020 16:27:04,572 INFO : 100% Done

11 May 2020 16:27:04,585 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80449/CPDR-FFPE-ID-1267_2020-01-29_12-45-30.sky.zip into the system

11 May 2020 16:27:04,586 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80240/CPDR-FFPE-ID-614_2020-01-28_13-31-07/CPDR-FFPE-ID-614.skyd into the system

11 May 2020 16:27:04,587 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80240/CPDR-FFPE-ID-614_2020-01-28_13-31-07/CPDR-FFPE-ID-614.skyd into the system

11 May 2020 16:27:04,587 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80240/CPDR-FFPE-ID-614_2020-01-28_13-31-07.sky.zip into the system

11 May 2020 16:27:04,592 INFO : Starting import from CPDR-FFPE-ID-614_2020-01-28_13-31-07.sky.zip

11 May 2020 16:27:04,599 INFO : Starting to import Skyline document from CPDR-FFPE-ID-614_2020-01-28_13-31-07.sky.zip

11 May 2020 16:27:04,605 INFO : Expanding CPDR-FFPE-ID-614.skyd

11 May 2020 16:27:04,740 INFO : Expanding CPDR-FFPE-ID-614.sky.view

11 May 2020 16:27:04,740 INFO : Expanding CPDR-FFPE-ID-614.sky

11 May 2020 16:27:04,747 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:27:04,750 INFO : 6% Done

11 May 2020 16:27:04,875 INFO : Inserting ANXA2

11 May 2020 16:27:04,882 INFO : 13% Done

11 May 2020 16:27:04,932 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:04,932 INFO : Inserting CAMKK2

11 May 2020 16:27:04,934 INFO : 19% Done

11 May 2020 16:27:04,979 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:04,979 INFO : Inserting CCND1

11 May 2020 16:27:04,981 INFO : 26% Done

11 May 2020 16:27:05,051 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:05,052 INFO : Inserting EGFR

11 May 2020 16:27:05,054 INFO : 30% Done

11 May 2020 16:27:05,163 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:05,164 INFO : Inserting ERG_pan

11 May 2020 16:27:05,167 INFO : 37% Done

11 May 2020 16:27:05,229 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:05,229 INFO : Inserting FOLH1

11 May 2020 16:27:05,231 INFO : 41% Done

11 May 2020 16:27:05,277 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:05,277 INFO : Inserting MMP9

11 May 2020 16:27:05,279 INFO : 49% Done

11 May 2020 16:27:05,346 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:05,346 INFO : Inserting MUC1

11 May 2020 16:27:05,348 INFO : 53% Done

11 May 2020 16:27:05,392 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:05,392 INFO : Inserting NCOA2

11 May 2020 16:27:05,395 INFO : 59% Done

11 May 2020 16:27:05,443 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:05,443 INFO : Inserting PSA

11 May 2020 16:27:05,445 INFO : 66% Done

11 May 2020 16:27:05,513 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:05,514 INFO : Inserting SMAD4

11 May 2020 16:27:05,516 INFO : 70% Done

11 May 2020 16:27:05,557 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:05,557 INFO : Inserting SPINK1

11 May 2020 16:27:05,559 INFO : 77% Done

11 May 2020 16:27:05,631 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:05,632 INFO : Inserting SPRC

11 May 2020 16:27:05,634 INFO : 81% Done

11 May 2020 16:27:05,682 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:05,682 INFO : 83% Done

11 May 2020 16:27:05,682 INFO : Inserting TFF3

11 May 2020 16:27:05,685 INFO : 90% Done

11 May 2020 16:27:05,774 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:05,775 INFO : Inserting TGFB1

11 May 2020 16:27:05,777 INFO : 94% Done

11 May 2020 16:27:05,809 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:05,809 INFO : Inserting VEGFA

11 May 2020 16:27:05,811 INFO : 98% Done

11 May 2020 16:27:05,864 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:05,864 INFO : Done parsing Skyline document.

11 May 2020 16:27:05,866 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:27:05,892 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:27:05,934 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:27:05,949 INFO : Cleaning up temp tables

11 May 2020 16:27:05,953 INFO : Completed import of Skyline document from CPDR-FFPE-ID-614_2020-01-28_13-31-07.sky.zip

11 May 2020 16:27:05,967 INFO : 100% Done

11 May 2020 16:27:05,979 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80240/CPDR-FFPE-ID-614_2020-01-28_13-31-07.sky.zip into the system

11 May 2020 16:27:05,979 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80241/CPDR-FFPE-ID-564_2020-01-28_13-31-19/CPDR-FFPE-ID-564.skyd into the system

11 May 2020 16:27:05,980 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80241/CPDR-FFPE-ID-564_2020-01-28_13-31-19/CPDR-FFPE-ID-564.skyd into the system

11 May 2020 16:27:05,980 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80241/CPDR-FFPE-ID-564_2020-01-28_13-31-19.sky.zip into the system

11 May 2020 16:27:05,985 INFO : Starting import from CPDR-FFPE-ID-564_2020-01-28_13-31-19.sky.zip

11 May 2020 16:27:05,992 INFO : Starting to import Skyline document from CPDR-FFPE-ID-564_2020-01-28_13-31-19.sky.zip

11 May 2020 16:27:05,998 INFO : Expanding CPDR-FFPE-ID-564.skyd

11 May 2020 16:27:06,130 INFO : Expanding CPDR-FFPE-ID-564.sky.view

11 May 2020 16:27:06,131 INFO : Expanding CPDR-FFPE-ID-564.sky

11 May 2020 16:27:06,139 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:27:06,142 INFO : 6% Done

11 May 2020 16:27:06,306 INFO : Inserting ANXA2

11 May 2020 16:27:06,313 INFO : 13% Done

11 May 2020 16:27:06,366 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:06,366 INFO : Inserting CAMKK2

11 May 2020 16:27:06,368 INFO : 19% Done

11 May 2020 16:27:06,420 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:06,420 INFO : Inserting CCND1

11 May 2020 16:27:06,423 INFO : 25% Done

11 May 2020 16:27:06,505 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:06,505 INFO : Inserting EGFR

11 May 2020 16:27:06,507 INFO : 31% Done

11 May 2020 16:27:06,547 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:06,547 INFO : Inserting ERG_pan

11 May 2020 16:27:06,550 INFO : 38% Done

11 May 2020 16:27:06,604 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:06,604 INFO : Inserting FOLH1

11 May 2020 16:27:06,606 INFO : 42% Done

11 May 2020 16:27:06,644 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:06,645 INFO : Inserting MMP9

11 May 2020 16:27:06,648 INFO : 51% Done

11 May 2020 16:27:06,710 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:06,711 INFO : Inserting MUC1

11 May 2020 16:27:06,713 INFO : 55% Done

11 May 2020 16:27:06,757 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:06,757 INFO : 57% Done

11 May 2020 16:27:06,757 INFO : Inserting NCOA2

11 May 2020 16:27:06,759 INFO : 60% Done

11 May 2020 16:27:06,794 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:06,794 INFO : Inserting PSA

11 May 2020 16:27:06,796 INFO : 68% Done

11 May 2020 16:27:06,850 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:06,850 INFO : Inserting SMAD4

11 May 2020 16:27:06,852 INFO : 71% Done

11 May 2020 16:27:06,887 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:06,887 INFO : Inserting SPINK1

11 May 2020 16:27:06,889 INFO : 78% Done

11 May 2020 16:27:06,944 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:06,945 INFO : Inserting SPRC

11 May 2020 16:27:06,947 INFO : 83% Done

11 May 2020 16:27:06,988 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:06,988 INFO : Inserting TFF3

11 May 2020 16:27:06,990 INFO : 91% Done

11 May 2020 16:27:07,055 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:07,055 INFO : Inserting TGFB1

11 May 2020 16:27:07,057 INFO : 93% Done

11 May 2020 16:27:07,089 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:07,090 INFO : Inserting VEGFA

11 May 2020 16:27:07,092 INFO : 98% Done

11 May 2020 16:27:07,146 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:07,147 INFO : Done parsing Skyline document.

11 May 2020 16:27:07,149 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:27:07,175 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:27:07,219 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:27:07,236 INFO : Cleaning up temp tables

11 May 2020 16:27:07,721 INFO : Completed import of Skyline document from CPDR-FFPE-ID-564_2020-01-28_13-31-19.sky.zip

11 May 2020 16:27:07,723 INFO : 100% Done

11 May 2020 16:27:07,736 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80241/CPDR-FFPE-ID-564_2020-01-28_13-31-19.sky.zip into the system

11 May 2020 16:27:07,736 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80245/CPDR-FFPE-ID-473_2020-01-28_13-32-06/CPDR-FFPE-ID-473.skyd into the system

11 May 2020 16:27:07,737 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80245/CPDR-FFPE-ID-473_2020-01-28_13-32-06/CPDR-FFPE-ID-473.skyd into the system

11 May 2020 16:27:07,737 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80245/CPDR-FFPE-ID-473_2020-01-28_13-32-06.sky.zip into the system

11 May 2020 16:27:07,741 INFO : Starting import from CPDR-FFPE-ID-473_2020-01-28_13-32-06.sky.zip

11 May 2020 16:27:07,749 INFO : Starting to import Skyline document from CPDR-FFPE-ID-473_2020-01-28_13-32-06.sky.zip

11 May 2020 16:27:07,755 INFO : Expanding CPDR-FFPE-ID-473.skyd

11 May 2020 16:27:07,883 INFO : Expanding CPDR-FFPE-ID-473.sky.view

11 May 2020 16:27:07,884 INFO : Expanding CPDR-FFPE-ID-473.sky

11 May 2020 16:27:07,892 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:27:07,895 INFO : 6% Done

11 May 2020 16:27:08,017 INFO : Inserting ANXA2

11 May 2020 16:27:08,024 INFO : 14% Done

11 May 2020 16:27:08,088 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:08,088 INFO : Inserting CAMKK2

11 May 2020 16:27:08,091 INFO : 20% Done

11 May 2020 16:27:08,157 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:08,157 INFO : Inserting CCND1

11 May 2020 16:27:08,160 INFO : 26% Done

11 May 2020 16:27:08,248 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:08,248 INFO : Inserting EGFR

11 May 2020 16:27:08,250 INFO : 32% Done

11 May 2020 16:27:08,296 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:08,296 INFO : Inserting ERG_pan

11 May 2020 16:27:08,298 INFO : 40% Done

11 May 2020 16:27:08,384 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:08,384 INFO : Inserting FOLH1

11 May 2020 16:27:08,386 INFO : 44% Done

11 May 2020 16:27:08,428 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:08,429 INFO : Inserting MMP9

11 May 2020 16:27:08,431 INFO : 52% Done

11 May 2020 16:27:08,499 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:08,500 INFO : Inserting MUC1

11 May 2020 16:27:08,502 INFO : 56% Done

11 May 2020 16:27:08,548 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:08,548 INFO : Inserting NCOA2

11 May 2020 16:27:08,551 INFO : 61% Done

11 May 2020 16:27:08,606 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:08,606 INFO : Inserting PSA

11 May 2020 16:27:08,608 INFO : 69% Done

11 May 2020 16:27:08,684 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:08,685 INFO : Inserting SMAD4

11 May 2020 16:27:08,687 INFO : 73% Done

11 May 2020 16:27:08,729 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:08,730 INFO : Inserting SPINK1

11 May 2020 16:27:08,732 INFO : 78% Done

11 May 2020 16:27:08,795 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:08,795 INFO : Inserting SPRC

11 May 2020 16:27:08,797 INFO : 84% Done

11 May 2020 16:27:08,844 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:08,844 INFO : Inserting TFF3

11 May 2020 16:27:08,846 INFO : 90% Done

11 May 2020 16:27:08,915 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:08,915 INFO : Inserting TGFB1

11 May 2020 16:27:08,917 INFO : 94% Done

11 May 2020 16:27:08,953 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:08,954 INFO : Inserting VEGFA

11 May 2020 16:27:08,956 INFO : 98% Done

11 May 2020 16:27:09,016 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:09,016 INFO : Done parsing Skyline document.

11 May 2020 16:27:09,019 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:27:09,050 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:27:09,093 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:27:09,110 INFO : Cleaning up temp tables

11 May 2020 16:27:09,576 INFO : Completed import of Skyline document from CPDR-FFPE-ID-473_2020-01-28_13-32-06.sky.zip

11 May 2020 16:27:09,578 INFO : 100% Done

11 May 2020 16:27:09,592 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80245/CPDR-FFPE-ID-473_2020-01-28_13-32-06.sky.zip into the system

11 May 2020 16:27:09,592 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80247/CPDR-FFPE-ID-495_2020-01-28_13-32-29/CPDR-FFPE-ID-495.skyd into the system

11 May 2020 16:27:09,594 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80247/CPDR-FFPE-ID-495_2020-01-28_13-32-29/CPDR-FFPE-ID-495.skyd into the system

11 May 2020 16:27:09,594 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80247/CPDR-FFPE-ID-495_2020-01-28_13-32-29.sky.zip into the system

11 May 2020 16:27:09,599 INFO : Starting import from CPDR-FFPE-ID-495_2020-01-28_13-32-29.sky.zip

11 May 2020 16:27:09,608 INFO : Starting to import Skyline document from CPDR-FFPE-ID-495_2020-01-28_13-32-29.sky.zip

11 May 2020 16:27:09,613 INFO : Expanding CPDR-FFPE-ID-495.skyd

11 May 2020 16:27:09,751 INFO : Expanding CPDR-FFPE-ID-495.sky.view

11 May 2020 16:27:09,752 INFO : Expanding CPDR-FFPE-ID-495.sky

11 May 2020 16:27:09,759 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:27:09,762 INFO : 6% Done

11 May 2020 16:27:09,925 INFO : Inserting ANXA2

11 May 2020 16:27:09,932 INFO : 13% Done

11 May 2020 16:27:09,987 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:09,987 INFO : Inserting CAMKK2

11 May 2020 16:27:09,989 INFO : 19% Done

11 May 2020 16:27:10,040 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:10,040 INFO : Inserting CCND1

11 May 2020 16:27:10,043 INFO : 25% Done

11 May 2020 16:27:10,131 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:10,131 INFO : 27% Done

11 May 2020 16:27:10,131 INFO : Inserting EGFR

11 May 2020 16:27:10,133 INFO : 31% Done

11 May 2020 16:27:10,173 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:10,173 INFO : Inserting ERG_pan

11 May 2020 16:27:10,176 INFO : 37% Done

11 May 2020 16:27:10,236 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:10,236 INFO : Inserting FOLH1

11 May 2020 16:27:10,238 INFO : 42% Done

11 May 2020 16:27:10,280 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:10,280 INFO : Inserting MMP9

11 May 2020 16:27:10,284 INFO : 50% Done

11 May 2020 16:27:10,356 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:10,356 INFO : Inserting MUC1

11 May 2020 16:27:10,358 INFO : 54% Done

11 May 2020 16:27:10,402 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:10,402 INFO : Inserting NCOA2

11 May 2020 16:27:10,404 INFO : 57% Done

11 May 2020 16:27:10,447 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:10,447 INFO : Inserting PSA

11 May 2020 16:27:10,449 INFO : 67% Done

11 May 2020 16:27:10,514 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:10,514 INFO : Inserting SMAD4

11 May 2020 16:27:10,515 INFO : 71% Done

11 May 2020 16:27:10,538 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:10,538 INFO : Inserting SPINK1

11 May 2020 16:27:10,540 INFO : 77% Done

11 May 2020 16:27:10,578 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:10,578 INFO : Inserting SPRC

11 May 2020 16:27:10,580 INFO : 83% Done

11 May 2020 16:27:10,607 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:10,607 INFO : Inserting TFF3

11 May 2020 16:27:10,609 INFO : 90% Done

11 May 2020 16:27:10,648 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:10,648 INFO : Inserting TGFB1

11 May 2020 16:27:10,649 INFO : 94% Done

11 May 2020 16:27:10,669 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:10,669 INFO : Inserting VEGFA

11 May 2020 16:27:10,670 INFO : 98% Done

11 May 2020 16:27:10,699 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:10,699 INFO : Done parsing Skyline document.

11 May 2020 16:27:10,701 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:27:10,713 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:27:10,731 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:27:10,738 INFO : Cleaning up temp tables

11 May 2020 16:27:11,130 INFO : Completed import of Skyline document from CPDR-FFPE-ID-495_2020-01-28_13-32-29.sky.zip

11 May 2020 16:27:11,132 INFO : 100% Done

11 May 2020 16:27:11,144 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80247/CPDR-FFPE-ID-495_2020-01-28_13-32-29.sky.zip into the system

11 May 2020 16:27:11,144 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80248/CPDR-FFPE-ID-493_2020-01-28_13-32-40/CPDR-FFPE-ID-493.skyd into the system

11 May 2020 16:27:11,145 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80248/CPDR-FFPE-ID-493_2020-01-28_13-32-40/CPDR-FFPE-ID-493.skyd into the system

11 May 2020 16:27:11,146 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80248/CPDR-FFPE-ID-493_2020-01-28_13-32-40.sky.zip into the system

11 May 2020 16:27:11,149 INFO : Starting import from CPDR-FFPE-ID-493_2020-01-28_13-32-40.sky.zip

11 May 2020 16:27:11,157 INFO : Starting to import Skyline document from CPDR-FFPE-ID-493_2020-01-28_13-32-40.sky.zip

11 May 2020 16:27:11,164 INFO : Expanding CPDR-FFPE-ID-493.skyd

11 May 2020 16:27:11,298 INFO : Expanding CPDR-FFPE-ID-493.sky.view

11 May 2020 16:27:11,298 INFO : Expanding CPDR-FFPE-ID-493.sky

11 May 2020 16:27:11,305 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:27:11,308 INFO : 6% Done

11 May 2020 16:27:11,423 INFO : Inserting ANXA2

11 May 2020 16:27:11,431 INFO : 14% Done

11 May 2020 16:27:11,487 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:11,487 INFO : Inserting CAMKK2

11 May 2020 16:27:11,490 INFO : 19% Done

11 May 2020 16:27:11,541 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:11,541 INFO : Inserting CCND1

11 May 2020 16:27:11,543 INFO : 26% Done

11 May 2020 16:27:11,615 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:11,615 INFO : Inserting EGFR

11 May 2020 16:27:11,617 INFO : 30% Done

11 May 2020 16:27:11,654 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:11,655 INFO : Inserting ERG_pan

11 May 2020 16:27:11,658 INFO : 38% Done

11 May 2020 16:27:11,728 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:11,729 INFO : Inserting FOLH1

11 May 2020 16:27:11,731 INFO : 42% Done

11 May 2020 16:27:11,778 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:11,778 INFO : 44% Done

11 May 2020 16:27:11,778 INFO : Inserting MMP9

11 May 2020 16:27:11,781 INFO : 49% Done

11 May 2020 16:27:11,846 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:11,847 INFO : 51% Done

11 May 2020 16:27:11,847 INFO : Inserting MUC1

11 May 2020 16:27:11,848 INFO : 55% Done

11 May 2020 16:27:11,889 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:11,889 INFO : Inserting NCOA2

11 May 2020 16:27:11,892 INFO : 59% Done

11 May 2020 16:27:11,931 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:11,931 INFO : Inserting PSA

11 May 2020 16:27:11,934 INFO : 67% Done

11 May 2020 16:27:11,997 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:11,997 INFO : Inserting SMAD4

11 May 2020 16:27:11,999 INFO : 71% Done

11 May 2020 16:27:12,040 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:12,040 INFO : Inserting SPINK1

11 May 2020 16:27:12,042 INFO : 76% Done

11 May 2020 16:27:12,099 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:12,099 INFO : 78% Done

11 May 2020 16:27:12,099 INFO : Inserting SPRC

11 May 2020 16:27:12,101 INFO : 81% Done

11 May 2020 16:27:12,145 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:12,145 INFO : Inserting TFF3

11 May 2020 16:27:12,148 INFO : 89% Done

11 May 2020 16:27:12,214 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:12,215 INFO : Inserting TGFB1

11 May 2020 16:27:12,217 INFO : 93% Done

11 May 2020 16:27:12,254 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:12,255 INFO : Inserting VEGFA

11 May 2020 16:27:12,257 INFO : 98% Done

11 May 2020 16:27:12,308 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:12,308 INFO : Done parsing Skyline document.

11 May 2020 16:27:12,311 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:27:12,337 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:27:12,378 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:27:12,394 INFO : Cleaning up temp tables

11 May 2020 16:27:12,876 INFO : Completed import of Skyline document from CPDR-FFPE-ID-493_2020-01-28_13-32-40.sky.zip

11 May 2020 16:27:12,877 INFO : 100% Done

11 May 2020 16:27:12,889 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80248/CPDR-FFPE-ID-493_2020-01-28_13-32-40.sky.zip into the system

11 May 2020 16:27:12,889 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80281/CPDR-FFPE-ID-743_2020-01-28_13-41-48/CPDR-FFPE-ID-743.skyd into the system

11 May 2020 16:27:12,890 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80281/CPDR-FFPE-ID-743_2020-01-28_13-41-48/CPDR-FFPE-ID-743.skyd into the system

11 May 2020 16:27:12,890 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80281/CPDR-FFPE-ID-743_2020-01-28_13-41-48.sky.zip into the system

11 May 2020 16:27:12,894 INFO : Starting import from CPDR-FFPE-ID-743_2020-01-28_13-41-48.sky.zip

11 May 2020 16:27:12,901 INFO : Starting to import Skyline document from CPDR-FFPE-ID-743_2020-01-28_13-41-48.sky.zip

11 May 2020 16:27:12,912 INFO : Expanding CPDR-FFPE-ID-743.skyd

11 May 2020 16:27:13,257 INFO : Expanding CPDR-FFPE-ID-743.sky.view

11 May 2020 16:27:13,258 INFO : Expanding CPDR-FFPE-ID-743.sky

11 May 2020 16:27:13,267 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:27:13,271 INFO : 6% Done

11 May 2020 16:27:13,672 INFO : Inserting ANXA2

11 May 2020 16:27:13,680 INFO : 14% Done

11 May 2020 16:27:13,806 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:13,806 INFO : Inserting CAMKK2

11 May 2020 16:27:13,809 INFO : 22% Done

11 May 2020 16:27:13,931 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:13,931 INFO : Inserting CCND1

11 May 2020 16:27:13,934 INFO : 26% Done

11 May 2020 16:27:14,026 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:14,026 INFO : Inserting EGFR

11 May 2020 16:27:14,030 INFO : 34% Done

11 May 2020 16:27:14,190 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:14,191 INFO : Inserting ERG_pan

11 May 2020 16:27:14,195 INFO : 42% Done

11 May 2020 16:27:14,376 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:14,376 INFO : Inserting FOLH1

11 May 2020 16:27:14,379 INFO : 47% Done

11 May 2020 16:27:14,473 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:14,474 INFO : Inserting MMP9

11 May 2020 16:27:14,477 INFO : 55% Done

11 May 2020 16:27:14,596 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:14,596 INFO : Inserting MUC1

11 May 2020 16:27:14,599 INFO : 61% Done

11 May 2020 16:27:14,704 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:14,704 INFO : Inserting NCOA2

11 May 2020 16:27:14,706 INFO : 68% Done

11 May 2020 16:27:14,819 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:14,819 INFO : Inserting PSA

11 May 2020 16:27:14,822 INFO : 72% Done

11 May 2020 16:27:14,896 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:14,896 INFO : Inserting SMAD4

11 May 2020 16:27:14,899 INFO : 77% Done

11 May 2020 16:27:14,977 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:14,977 INFO : Inserting SPINK1

11 May 2020 16:27:14,980 INFO : 81% Done

11 May 2020 16:27:15,076 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:15,076 INFO : 82% Done

11 May 2020 16:27:15,076 INFO : Inserting SPRC

11 May 2020 16:27:15,079 INFO : 86% Done

11 May 2020 16:27:15,161 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:15,161 INFO : Inserting TFF3

11 May 2020 16:27:15,164 INFO : 89% Done

11 May 2020 16:27:15,229 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:15,229 INFO : Inserting TGFB1

11 May 2020 16:27:15,232 INFO : 91% Done

11 May 2020 16:27:15,267 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:15,268 INFO : Inserting VEGFA

11 May 2020 16:27:15,271 INFO : 98% Done

11 May 2020 16:27:15,429 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:15,429 INFO : Done parsing Skyline document.

11 May 2020 16:27:15,432 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:27:15,466 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:27:15,559 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:27:15,592 INFO : Cleaning up temp tables

11 May 2020 16:27:16,050 INFO : Completed import of Skyline document from CPDR-FFPE-ID-743_2020-01-28_13-41-48.sky.zip

11 May 2020 16:27:16,052 INFO : 100% Done

11 May 2020 16:27:16,063 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80281/CPDR-FFPE-ID-743_2020-01-28_13-41-48.sky.zip into the system

11 May 2020 16:27:16,063 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80282/CPDR-FFPE-ID-670_2020-01-28_13-42-03/CPDR-FFPE-ID-670.skyd into the system

11 May 2020 16:27:16,065 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80282/CPDR-FFPE-ID-670_2020-01-28_13-42-03/CPDR-FFPE-ID-670.skyd into the system

11 May 2020 16:27:16,065 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80282/CPDR-FFPE-ID-670_2020-01-28_13-42-03.sky.zip into the system

11 May 2020 16:27:16,070 INFO : Starting import from CPDR-FFPE-ID-670_2020-01-28_13-42-03.sky.zip

11 May 2020 16:27:16,077 INFO : Starting to import Skyline document from CPDR-FFPE-ID-670_2020-01-28_13-42-03.sky.zip

11 May 2020 16:27:16,087 INFO : Expanding CPDR-FFPE-ID-670.skyd

11 May 2020 16:27:16,348 INFO : Expanding CPDR-FFPE-ID-670.sky.view

11 May 2020 16:27:16,349 INFO : Expanding CPDR-FFPE-ID-670.sky

11 May 2020 16:27:16,357 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:27:16,361 INFO : 6% Done

11 May 2020 16:27:16,559 INFO : Inserting ANXA2

11 May 2020 16:27:16,567 INFO : 15% Done

11 May 2020 16:27:16,683 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:16,683 INFO : Inserting CAMKK2

11 May 2020 16:27:16,686 INFO : 22% Done

11 May 2020 16:27:16,796 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:16,796 INFO : Inserting CCND1

11 May 2020 16:27:16,799 INFO : 27% Done

11 May 2020 16:27:16,883 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:16,883 INFO : Inserting EGFR

11 May 2020 16:27:16,886 INFO : 34% Done

11 May 2020 16:27:16,978 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:16,978 INFO : Inserting ERG_pan

11 May 2020 16:27:16,981 INFO : 40% Done

11 May 2020 16:27:17,071 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:17,072 INFO : 42% Done

11 May 2020 16:27:17,072 INFO : Inserting FOLH1

11 May 2020 16:27:17,074 INFO : 45% Done

11 May 2020 16:27:17,136 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:17,137 INFO : Inserting MMP9

11 May 2020 16:27:17,140 INFO : 53% Done

11 May 2020 16:27:17,261 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:17,262 INFO : 55% Done

11 May 2020 16:27:17,262 INFO : Inserting MUC1

11 May 2020 16:27:17,265 INFO : 59% Done

11 May 2020 16:27:17,348 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:17,348 INFO : Inserting NCOA2

11 May 2020 16:27:17,350 INFO : 66% Done

11 May 2020 16:27:17,439 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:17,439 INFO : Inserting PSA

11 May 2020 16:27:17,441 INFO : 70% Done

11 May 2020 16:27:17,492 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:17,492 INFO : Inserting SMAD4

11 May 2020 16:27:17,494 INFO : 76% Done

11 May 2020 16:27:17,579 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:17,579 INFO : Inserting SPINK1

11 May 2020 16:27:17,581 INFO : 81% Done

11 May 2020 16:27:17,648 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:17,648 INFO : Inserting SPRC

11 May 2020 16:27:17,650 INFO : 85% Done

11 May 2020 16:27:17,717 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:17,717 INFO : Inserting TFF3

11 May 2020 16:27:17,719 INFO : 89% Done

11 May 2020 16:27:17,771 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:17,772 INFO : Inserting TGFB1

11 May 2020 16:27:17,773 INFO : 91% Done

11 May 2020 16:27:17,797 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:17,797 INFO : Inserting VEGFA

11 May 2020 16:27:17,800 INFO : 98% Done

11 May 2020 16:27:17,907 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:17,907 INFO : Done parsing Skyline document.

11 May 2020 16:27:17,910 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:27:17,939 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:27:18,009 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:27:18,035 INFO : Cleaning up temp tables

11 May 2020 16:27:18,039 INFO : Completed import of Skyline document from CPDR-FFPE-ID-670_2020-01-28_13-42-03.sky.zip

11 May 2020 16:27:18,047 INFO : 100% Done

11 May 2020 16:27:18,058 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80282/CPDR-FFPE-ID-670_2020-01-28_13-42-03.sky.zip into the system

11 May 2020 16:27:18,058 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80289/CPDR-FFPE-ID-782_2020-01-28_13-44-24/CPDR-FFPE-ID-782.skyd into the system

11 May 2020 16:27:18,059 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80289/CPDR-FFPE-ID-782_2020-01-28_13-44-24/CPDR-FFPE-ID-782.skyd into the system

11 May 2020 16:27:18,059 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80289/CPDR-FFPE-ID-782_2020-01-28_13-44-24.sky.zip into the system

11 May 2020 16:27:18,064 INFO : Starting import from CPDR-FFPE-ID-782_2020-01-28_13-44-24.sky.zip

11 May 2020 16:27:18,070 INFO : Starting to import Skyline document from CPDR-FFPE-ID-782_2020-01-28_13-44-24.sky.zip

11 May 2020 16:27:18,076 INFO : Expanding CPDR-FFPE-ID-782.skyd

11 May 2020 16:27:18,252 INFO : Expanding CPDR-FFPE-ID-782.sky.view

11 May 2020 16:27:18,252 INFO : Expanding CPDR-FFPE-ID-782.sky

11 May 2020 16:27:18,261 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:27:18,264 INFO : 5% Done

11 May 2020 16:27:18,398 INFO : Inserting ANXA2

11 May 2020 16:27:18,407 INFO : 15% Done

11 May 2020 16:27:18,524 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:18,524 INFO : Inserting CAMKK2

11 May 2020 16:27:18,526 INFO : 21% Done

11 May 2020 16:27:18,592 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:18,592 INFO : Inserting CCND1

11 May 2020 16:27:18,595 INFO : 27% Done

11 May 2020 16:27:18,653 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:18,653 INFO : Inserting EGFR

11 May 2020 16:27:18,656 INFO : 33% Done

11 May 2020 16:27:18,724 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:18,724 INFO : 35% Done

11 May 2020 16:27:18,724 INFO : Inserting ERG_pan

11 May 2020 16:27:18,727 INFO : 43% Done

11 May 2020 16:27:18,805 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:18,805 INFO : Inserting FOLH1

11 May 2020 16:27:18,807 INFO : 48% Done

11 May 2020 16:27:18,847 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:18,847 INFO : Inserting MMP9

11 May 2020 16:27:18,849 INFO : 57% Done

11 May 2020 16:27:18,925 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:18,925 INFO : Inserting MUC1

11 May 2020 16:27:18,927 INFO : 62% Done

11 May 2020 16:27:18,974 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:18,974 INFO : Inserting NCOA2

11 May 2020 16:27:18,976 INFO : 67% Done

11 May 2020 16:27:19,014 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:19,014 INFO : Inserting PSA

11 May 2020 16:27:19,016 INFO : 72% Done

11 May 2020 16:27:19,057 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:19,057 INFO : Inserting SMAD4

11 May 2020 16:27:19,058 INFO : 74% Done

11 May 2020 16:27:19,102 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:19,102 INFO : Inserting SPINK1

11 May 2020 16:27:19,104 INFO : 79% Done

11 May 2020 16:27:19,151 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:19,151 INFO : Inserting SPRC

11 May 2020 16:27:19,153 INFO : 84% Done

11 May 2020 16:27:19,193 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:19,193 INFO : Inserting TFF3

11 May 2020 16:27:19,195 INFO : 87% Done

11 May 2020 16:27:19,239 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:19,239 INFO : 89% Done

11 May 2020 16:27:19,239 INFO : Inserting TGFB1

11 May 2020 16:27:19,241 INFO : 90% Done

11 May 2020 16:27:19,263 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:19,263 INFO : Inserting VEGFA

11 May 2020 16:27:19,265 INFO : 98% Done

11 May 2020 16:27:19,344 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:19,345 INFO : Done parsing Skyline document.

11 May 2020 16:27:19,347 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:27:19,372 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:27:19,415 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:27:19,431 INFO : Cleaning up temp tables

11 May 2020 16:27:19,903 INFO : Completed import of Skyline document from CPDR-FFPE-ID-782_2020-01-28_13-44-24.sky.zip

11 May 2020 16:27:19,905 INFO : 100% Done

11 May 2020 16:27:19,917 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80289/CPDR-FFPE-ID-782_2020-01-28_13-44-24.sky.zip into the system

11 May 2020 16:27:19,917 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80291/CPDR-FFPE-ID-635_2020-01-28_13-44-47/CPDR-FFPE-ID-635.skyd into the system

11 May 2020 16:27:19,918 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80291/CPDR-FFPE-ID-635_2020-01-28_13-44-47/CPDR-FFPE-ID-635.skyd into the system

11 May 2020 16:27:19,918 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80291/CPDR-FFPE-ID-635_2020-01-28_13-44-47.sky.zip into the system

11 May 2020 16:27:19,923 INFO : Starting import from CPDR-FFPE-ID-635_2020-01-28_13-44-47.sky.zip

11 May 2020 16:27:19,930 INFO : Starting to import Skyline document from CPDR-FFPE-ID-635_2020-01-28_13-44-47.sky.zip

11 May 2020 16:27:19,938 INFO : Expanding CPDR-FFPE-ID-635.skyd

11 May 2020 16:27:20,135 INFO : Expanding CPDR-FFPE-ID-635.sky.view

11 May 2020 16:27:20,136 INFO : Expanding CPDR-FFPE-ID-635.sky

11 May 2020 16:27:20,144 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:27:20,147 INFO : 5% Done

11 May 2020 16:27:20,469 INFO : Inserting ANXA2

11 May 2020 16:27:20,478 INFO : 14% Done

11 May 2020 16:27:20,587 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:20,588 INFO : 15% Done

11 May 2020 16:27:20,588 INFO : Inserting CAMKK2

11 May 2020 16:27:20,590 INFO : 21% Done

11 May 2020 16:27:20,688 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:20,689 INFO : 23% Done

11 May 2020 16:27:20,689 INFO : Inserting CCND1

11 May 2020 16:27:20,691 INFO : 27% Done

11 May 2020 16:27:20,760 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:20,760 INFO : Inserting EGFR

11 May 2020 16:27:20,763 INFO : 33% Done

11 May 2020 16:27:20,852 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:20,852 INFO : Inserting ERG_pan

11 May 2020 16:27:20,855 INFO : 42% Done

11 May 2020 16:27:20,971 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:20,972 INFO : Inserting FOLH1

11 May 2020 16:27:20,974 INFO : 47% Done

11 May 2020 16:27:21,036 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:21,036 INFO : Inserting MMP9

11 May 2020 16:27:21,039 INFO : 56% Done

11 May 2020 16:27:21,156 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:21,156 INFO : Inserting MUC1

11 May 2020 16:27:21,158 INFO : 62% Done

11 May 2020 16:27:21,233 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:21,234 INFO : Inserting NCOA2

11 May 2020 16:27:21,236 INFO : 68% Done

11 May 2020 16:27:21,317 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:21,317 INFO : Inserting PSA

11 May 2020 16:27:21,319 INFO : 72% Done

11 May 2020 16:27:21,379 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:21,379 INFO : Inserting SMAD4

11 May 2020 16:27:21,382 INFO : 77% Done

11 May 2020 16:27:21,461 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:21,461 INFO : Inserting SPINK1

11 May 2020 16:27:21,463 INFO : 81% Done

11 May 2020 16:27:21,514 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:21,514 INFO : Inserting SPRC

11 May 2020 16:27:21,516 INFO : 85% Done

11 May 2020 16:27:21,572 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:21,573 INFO : Inserting TFF3

11 May 2020 16:27:21,575 INFO : 90% Done

11 May 2020 16:27:21,632 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:21,632 INFO : Inserting TGFB1

11 May 2020 16:27:21,633 INFO : 91% Done

11 May 2020 16:27:21,659 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:21,659 INFO : Inserting VEGFA

11 May 2020 16:27:21,662 INFO : 98% Done

11 May 2020 16:27:21,756 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:21,756 INFO : Done parsing Skyline document.

11 May 2020 16:27:21,758 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:27:21,786 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:27:21,845 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:27:21,868 INFO : Cleaning up temp tables

11 May 2020 16:27:22,392 INFO : Completed import of Skyline document from CPDR-FFPE-ID-635_2020-01-28_13-44-47.sky.zip

11 May 2020 16:27:22,394 INFO : 100% Done

11 May 2020 16:27:22,405 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80291/CPDR-FFPE-ID-635_2020-01-28_13-44-47.sky.zip into the system

11 May 2020 16:27:22,405 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80301/CPDR-FFPE-ID-585_2020-01-28_13-46-48/CPDR-FFPE-ID-585.skyd into the system

11 May 2020 16:27:22,407 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80301/CPDR-FFPE-ID-585_2020-01-28_13-46-48/CPDR-FFPE-ID-585.skyd into the system

11 May 2020 16:27:22,407 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80301/CPDR-FFPE-ID-585_2020-01-28_13-46-48.sky.zip into the system

11 May 2020 16:27:22,410 INFO : Starting import from CPDR-FFPE-ID-585_2020-01-28_13-46-48.sky.zip

11 May 2020 16:27:22,418 INFO : Starting to import Skyline document from CPDR-FFPE-ID-585_2020-01-28_13-46-48.sky.zip

11 May 2020 16:27:22,428 INFO : Expanding CPDR-FFPE-ID-585.skyd

11 May 2020 16:27:22,679 INFO : Expanding CPDR-FFPE-ID-585.sky.view

11 May 2020 16:27:22,680 INFO : Expanding CPDR-FFPE-ID-585.sky

11 May 2020 16:27:22,689 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:27:22,693 INFO : 6% Done

11 May 2020 16:27:22,887 INFO : Inserting ANXA2

11 May 2020 16:27:22,895 INFO : 14% Done

11 May 2020 16:27:23,005 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:23,005 INFO : Inserting CAMKK2

11 May 2020 16:27:23,009 INFO : 22% Done

11 May 2020 16:27:23,114 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:23,115 INFO : Inserting CCND1

11 May 2020 16:27:23,117 INFO : 25% Done

11 May 2020 16:27:23,176 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:23,176 INFO : Inserting EGFR

11 May 2020 16:27:23,179 INFO : 33% Done

11 May 2020 16:27:23,307 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:23,308 INFO : Inserting ERG_pan

11 May 2020 16:27:23,313 INFO : 43% Done

11 May 2020 16:27:23,465 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:23,465 INFO : Inserting FOLH1

11 May 2020 16:27:23,468 INFO : 49% Done

11 May 2020 16:27:23,552 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:23,553 INFO : Inserting MMP9

11 May 2020 16:27:23,556 INFO : 60% Done

11 May 2020 16:27:23,702 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:23,702 INFO : Inserting MUC1

11 May 2020 16:27:23,705 INFO : 67% Done

11 May 2020 16:27:23,806 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:23,806 INFO : Inserting NCOA2

11 May 2020 16:27:23,809 INFO : 73% Done

11 May 2020 16:27:23,888 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:23,888 INFO : Inserting PSA

11 May 2020 16:27:23,890 INFO : 75% Done

11 May 2020 16:27:23,937 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:23,937 INFO : Inserting SMAD4

11 May 2020 16:27:23,939 INFO : 80% Done

11 May 2020 16:27:24,017 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:24,017 INFO : 81% Done

11 May 2020 16:27:24,018 INFO : Inserting SPINK1

11 May 2020 16:27:24,019 INFO : 83% Done

11 May 2020 16:27:24,069 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:24,069 INFO : Inserting SPRC

11 May 2020 16:27:24,071 INFO : 87% Done

11 May 2020 16:27:24,119 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:24,119 INFO : Inserting TFF3

11 May 2020 16:27:24,121 INFO : 90% Done

11 May 2020 16:27:24,171 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:24,171 INFO : Inserting TGFB1

11 May 2020 16:27:24,172 INFO : 92% Done

11 May 2020 16:27:24,197 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:24,197 INFO : Inserting VEGFA

11 May 2020 16:27:24,200 INFO : 98% Done

11 May 2020 16:27:24,292 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:24,292 INFO : Done parsing Skyline document.

11 May 2020 16:27:24,294 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:27:24,324 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:27:24,392 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:27:24,418 INFO : Cleaning up temp tables

11 May 2020 16:27:24,910 INFO : Completed import of Skyline document from CPDR-FFPE-ID-585_2020-01-28_13-46-48.sky.zip

11 May 2020 16:27:24,911 INFO : 100% Done

11 May 2020 16:27:24,924 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80301/CPDR-FFPE-ID-585_2020-01-28_13-46-48.sky.zip into the system

11 May 2020 16:27:24,924 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80288/CPDR-FFPE-ID-586_2020-01-28_13-44-11/CPDR-FFPE-ID-586.skyd into the system

11 May 2020 16:27:24,926 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80288/CPDR-FFPE-ID-586_2020-01-28_13-44-11/CPDR-FFPE-ID-586.skyd into the system

11 May 2020 16:27:24,927 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80288/CPDR-FFPE-ID-586_2020-01-28_13-44-11.sky.zip into the system

11 May 2020 16:27:24,931 INFO : Starting import from CPDR-FFPE-ID-586_2020-01-28_13-44-11.sky.zip

11 May 2020 16:27:24,938 INFO : Starting to import Skyline document from CPDR-FFPE-ID-586_2020-01-28_13-44-11.sky.zip

11 May 2020 16:27:24,946 INFO : Expanding CPDR-FFPE-ID-586.skyd

11 May 2020 16:27:25,138 INFO : Expanding CPDR-FFPE-ID-586.sky.view

11 May 2020 16:27:25,139 INFO : Expanding CPDR-FFPE-ID-586.sky

11 May 2020 16:27:25,147 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:27:25,151 INFO : 6% Done

11 May 2020 16:27:25,304 INFO : Inserting ANXA2

11 May 2020 16:27:25,312 INFO : 15% Done

11 May 2020 16:27:25,401 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:25,401 INFO : Inserting CAMKK2

11 May 2020 16:27:25,404 INFO : 21% Done

11 May 2020 16:27:25,500 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:25,500 INFO : Inserting CCND1

11 May 2020 16:27:25,502 INFO : 26% Done

11 May 2020 16:27:25,566 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:25,566 INFO : Inserting EGFR

11 May 2020 16:27:25,569 INFO : 34% Done

11 May 2020 16:27:25,669 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:25,669 INFO : Inserting ERG_pan

11 May 2020 16:27:25,671 INFO : 42% Done

11 May 2020 16:27:25,758 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:25,758 INFO : Inserting FOLH1

11 May 2020 16:27:25,761 INFO : 46% Done

11 May 2020 16:27:25,823 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:25,823 INFO : Inserting MMP9

11 May 2020 16:27:25,827 INFO : 58% Done

11 May 2020 16:27:25,952 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:25,952 INFO : Inserting MUC1

11 May 2020 16:27:25,954 INFO : 63% Done

11 May 2020 16:27:26,034 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:26,034 INFO : Inserting NCOA2

11 May 2020 16:27:26,037 INFO : 70% Done

11 May 2020 16:27:26,110 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:26,110 INFO : Inserting PSA

11 May 2020 16:27:26,112 INFO : 74% Done

11 May 2020 16:27:26,159 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:26,159 INFO : Inserting SMAD4

11 May 2020 16:27:26,161 INFO : 79% Done

11 May 2020 16:27:26,237 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:26,237 INFO : Inserting SPINK1

11 May 2020 16:27:26,239 INFO : 83% Done

11 May 2020 16:27:26,291 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:26,291 INFO : Inserting SPRC

11 May 2020 16:27:26,293 INFO : 86% Done

11 May 2020 16:27:26,329 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:26,329 INFO : Inserting TFF3

11 May 2020 16:27:26,331 INFO : 90% Done

11 May 2020 16:27:26,382 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:26,382 INFO : Inserting TGFB1

11 May 2020 16:27:26,383 INFO : 91% Done

11 May 2020 16:27:26,407 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:26,407 INFO : Inserting VEGFA

11 May 2020 16:27:26,410 INFO : 98% Done

11 May 2020 16:27:26,493 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:26,494 INFO : Done parsing Skyline document.

11 May 2020 16:27:26,496 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:27:26,524 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:27:26,582 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:27:26,604 INFO : Cleaning up temp tables

11 May 2020 16:27:26,620 INFO : Completed import of Skyline document from CPDR-FFPE-ID-586_2020-01-28_13-44-11.sky.zip

11 May 2020 16:27:26,621 INFO : 100% Done

11 May 2020 16:27:26,633 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80288/CPDR-FFPE-ID-586_2020-01-28_13-44-11.sky.zip into the system

11 May 2020 16:27:26,633 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80298/CPDR-FFPE-ID-754_2020-01-28_13-46-09/CPDR-FFPE-ID-754.skyd into the system

11 May 2020 16:27:26,634 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80298/CPDR-FFPE-ID-754_2020-01-28_13-46-09/CPDR-FFPE-ID-754.skyd into the system

11 May 2020 16:27:26,634 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80298/CPDR-FFPE-ID-754_2020-01-28_13-46-09.sky.zip into the system

11 May 2020 16:27:26,639 INFO : Starting import from CPDR-FFPE-ID-754_2020-01-28_13-46-09.sky.zip

11 May 2020 16:27:26,646 INFO : Starting to import Skyline document from CPDR-FFPE-ID-754_2020-01-28_13-46-09.sky.zip

11 May 2020 16:27:26,652 INFO : Expanding CPDR-FFPE-ID-754.skyd

11 May 2020 16:27:26,818 INFO : Expanding CPDR-FFPE-ID-754.sky.view

11 May 2020 16:27:26,819 INFO : Expanding CPDR-FFPE-ID-754.sky

11 May 2020 16:27:26,827 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:27:26,830 INFO : 6% Done

11 May 2020 16:27:26,991 INFO : Inserting ANXA2

11 May 2020 16:27:26,998 INFO : 14% Done

11 May 2020 16:27:27,096 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:27,096 INFO : Inserting CAMKK2

11 May 2020 16:27:27,099 INFO : 23% Done

11 May 2020 16:27:27,194 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:27,194 INFO : Inserting CCND1

11 May 2020 16:27:27,197 INFO : 26% Done

11 May 2020 16:27:27,252 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:27,252 INFO : Inserting EGFR

11 May 2020 16:27:27,255 INFO : 34% Done

11 May 2020 16:27:27,329 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:27,329 INFO : Inserting ERG_pan

11 May 2020 16:27:27,332 INFO : 42% Done

11 May 2020 16:27:27,440 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:27,440 INFO : Inserting FOLH1

11 May 2020 16:27:27,442 INFO : 47% Done

11 May 2020 16:27:27,492 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:27,492 INFO : Inserting MMP9

11 May 2020 16:27:27,494 INFO : 55% Done

11 May 2020 16:27:27,595 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:27,595 INFO : Inserting MUC1

11 May 2020 16:27:27,597 INFO : 61% Done

11 May 2020 16:27:27,650 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:27,650 INFO : Inserting NCOA2

11 May 2020 16:27:27,652 INFO : 67% Done

11 May 2020 16:27:27,721 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:27,722 INFO : Inserting PSA

11 May 2020 16:27:27,723 INFO : 71% Done

11 May 2020 16:27:27,771 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:27,771 INFO : Inserting SMAD4

11 May 2020 16:27:27,773 INFO : 77% Done

11 May 2020 16:27:27,852 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:27,852 INFO : Inserting SPINK1

11 May 2020 16:27:27,854 INFO : 80% Done

11 May 2020 16:27:27,900 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:27,901 INFO : Inserting SPRC

11 May 2020 16:27:27,902 INFO : 85% Done

11 May 2020 16:27:27,953 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:27,953 INFO : Inserting TFF3

11 May 2020 16:27:27,955 INFO : 89% Done

11 May 2020 16:27:28,002 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:28,002 INFO : Inserting TGFB1

11 May 2020 16:27:28,004 INFO : 92% Done

11 May 2020 16:27:28,028 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:28,028 INFO : Inserting VEGFA

11 May 2020 16:27:28,031 INFO : 98% Done

11 May 2020 16:27:28,113 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:28,113 INFO : Done parsing Skyline document.

11 May 2020 16:27:28,115 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:27:28,143 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:27:28,196 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:27:28,216 INFO : Cleaning up temp tables

11 May 2020 16:27:28,713 INFO : Completed import of Skyline document from CPDR-FFPE-ID-754_2020-01-28_13-46-09.sky.zip

11 May 2020 16:27:28,715 INFO : 100% Done

11 May 2020 16:27:28,727 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80298/CPDR-FFPE-ID-754_2020-01-28_13-46-09.sky.zip into the system

11 May 2020 16:27:28,727 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80307/CPDR-FFPE-ID-738_2020-01-28_13-48-23/CPDR-FFPE-ID-738.skyd into the system

11 May 2020 16:27:28,728 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80307/CPDR-FFPE-ID-738_2020-01-28_13-48-23/CPDR-FFPE-ID-738.skyd into the system

11 May 2020 16:27:28,729 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80307/CPDR-FFPE-ID-738_2020-01-28_13-48-23.sky.zip into the system

11 May 2020 16:27:28,732 INFO : Starting import from CPDR-FFPE-ID-738_2020-01-28_13-48-23.sky.zip

11 May 2020 16:27:28,739 INFO : Starting to import Skyline document from CPDR-FFPE-ID-738_2020-01-28_13-48-23.sky.zip

11 May 2020 16:27:28,752 INFO : Expanding CPDR-FFPE-ID-738.skyd

11 May 2020 16:27:29,084 INFO : Expanding CPDR-FFPE-ID-738.sky.view

11 May 2020 16:27:29,085 INFO : Expanding CPDR-FFPE-ID-738.sky

11 May 2020 16:27:29,095 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:27:29,098 INFO : 6% Done

11 May 2020 16:27:29,416 INFO : Inserting ANXA2

11 May 2020 16:27:29,424 INFO : 13% Done

11 May 2020 16:27:29,543 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:29,543 INFO : Inserting CAMKK2

11 May 2020 16:27:29,546 INFO : 19% Done

11 May 2020 16:27:29,650 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:29,650 INFO : Inserting CCND1

11 May 2020 16:27:29,652 INFO : 24% Done

11 May 2020 16:27:29,733 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:29,733 INFO : Inserting EGFR

11 May 2020 16:27:29,737 INFO : 32% Done

11 May 2020 16:27:29,905 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:29,905 INFO : Inserting ERG_pan

11 May 2020 16:27:29,909 INFO : 42% Done

11 May 2020 16:27:30,084 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:30,084 INFO : Inserting FOLH1

11 May 2020 16:27:30,087 INFO : 49% Done

11 May 2020 16:27:30,205 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:30,206 INFO : Inserting MMP9

11 May 2020 16:27:30,210 INFO : 61% Done

11 May 2020 16:27:30,411 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:30,411 INFO : Inserting MUC1

11 May 2020 16:27:30,414 INFO : 67% Done

11 May 2020 16:27:30,552 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:30,552 INFO : Inserting NCOA2

11 May 2020 16:27:30,555 INFO : 74% Done

11 May 2020 16:27:30,656 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:30,657 INFO : Inserting PSA

11 May 2020 16:27:30,659 INFO : 76% Done

11 May 2020 16:27:30,738 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:30,738 INFO : Inserting SMAD4

11 May 2020 16:27:30,741 INFO : 80% Done

11 May 2020 16:27:30,807 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:30,807 INFO : Inserting SPINK1

11 May 2020 16:27:30,810 INFO : 84% Done

11 May 2020 16:27:30,880 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:30,880 INFO : Inserting SPRC

11 May 2020 16:27:30,883 INFO : 86% Done

11 May 2020 16:27:30,954 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:30,954 INFO : 87% Done

11 May 2020 16:27:30,954 INFO : Inserting TFF3

11 May 2020 16:27:30,957 INFO : 91% Done

11 May 2020 16:27:31,033 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:31,033 INFO : Inserting TGFB1

11 May 2020 16:27:31,035 INFO : 93% Done

11 May 2020 16:27:31,074 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:31,074 INFO : Inserting VEGFA

11 May 2020 16:27:31,077 INFO : 98% Done

11 May 2020 16:27:31,187 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:31,187 INFO : Done parsing Skyline document.

11 May 2020 16:27:31,189 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:27:31,221 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:27:31,311 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:27:31,345 INFO : Cleaning up temp tables

11 May 2020 16:27:31,830 INFO : Completed import of Skyline document from CPDR-FFPE-ID-738_2020-01-28_13-48-23.sky.zip

11 May 2020 16:27:31,832 INFO : 100% Done

11 May 2020 16:27:31,844 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80307/CPDR-FFPE-ID-738_2020-01-28_13-48-23.sky.zip into the system

11 May 2020 16:27:31,844 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80299/CPDR-FFPE-ID-650_2020-01-28_13-46-22/CPDR-FFPE-ID-650.skyd into the system

11 May 2020 16:27:31,846 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80299/CPDR-FFPE-ID-650_2020-01-28_13-46-22/CPDR-FFPE-ID-650.skyd into the system

11 May 2020 16:27:31,846 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80299/CPDR-FFPE-ID-650_2020-01-28_13-46-22.sky.zip into the system

11 May 2020 16:27:31,849 INFO : Starting import from CPDR-FFPE-ID-650_2020-01-28_13-46-22.sky.zip

11 May 2020 16:27:31,857 INFO : Starting to import Skyline document from CPDR-FFPE-ID-650_2020-01-28_13-46-22.sky.zip

11 May 2020 16:27:31,863 INFO : Expanding CPDR-FFPE-ID-650.skyd

11 May 2020 16:27:32,030 INFO : Expanding CPDR-FFPE-ID-650.sky.view

11 May 2020 16:27:32,030 INFO : Expanding CPDR-FFPE-ID-650.sky

11 May 2020 16:27:32,039 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:27:32,042 INFO : 6% Done

11 May 2020 16:27:32,245 INFO : Inserting ANXA2

11 May 2020 16:27:32,252 INFO : 14% Done

11 May 2020 16:27:32,344 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:32,344 INFO : Inserting CAMKK2

11 May 2020 16:27:32,347 INFO : 23% Done

11 May 2020 16:27:32,436 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:32,436 INFO : Inserting CCND1

11 May 2020 16:27:32,438 INFO : 28% Done

11 May 2020 16:27:32,500 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:32,500 INFO : Inserting EGFR

11 May 2020 16:27:32,502 INFO : 34% Done

11 May 2020 16:27:32,581 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:32,581 INFO : 35% Done

11 May 2020 16:27:32,582 INFO : Inserting ERG_pan

11 May 2020 16:27:32,584 INFO : 44% Done

11 May 2020 16:27:32,694 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:32,694 INFO : Inserting FOLH1

11 May 2020 16:27:32,696 INFO : 48% Done

11 May 2020 16:27:32,744 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:32,744 INFO : Inserting MMP9

11 May 2020 16:27:32,746 INFO : 57% Done

11 May 2020 16:27:32,859 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:32,859 INFO : 58% Done

11 May 2020 16:27:32,859 INFO : Inserting MUC1

11 May 2020 16:27:32,862 INFO : 62% Done

11 May 2020 16:27:32,921 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:32,921 INFO : Inserting NCOA2

11 May 2020 16:27:32,924 INFO : 69% Done

11 May 2020 16:27:33,003 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:33,003 INFO : Inserting PSA

11 May 2020 16:27:33,005 INFO : 72% Done

11 May 2020 16:27:33,053 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:33,053 INFO : 74% Done

11 May 2020 16:27:33,053 INFO : Inserting SMAD4

11 May 2020 16:27:33,055 INFO : 76% Done

11 May 2020 16:27:33,103 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:33,103 INFO : Inserting SPINK1

11 May 2020 16:27:33,105 INFO : 80% Done

11 May 2020 16:27:33,158 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:33,159 INFO : Inserting SPRC

11 May 2020 16:27:33,161 INFO : 84% Done

11 May 2020 16:27:33,210 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:33,211 INFO : Inserting TFF3

11 May 2020 16:27:33,212 INFO : 89% Done

11 May 2020 16:27:33,261 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:33,261 INFO : Inserting TGFB1

11 May 2020 16:27:33,263 INFO : 92% Done

11 May 2020 16:27:33,288 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:33,288 INFO : Inserting VEGFA

11 May 2020 16:27:33,290 INFO : 98% Done

11 May 2020 16:27:33,375 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:33,375 INFO : Done parsing Skyline document.

11 May 2020 16:27:33,377 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:27:33,405 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:27:33,457 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:27:33,478 INFO : Cleaning up temp tables

11 May 2020 16:27:33,983 INFO : Completed import of Skyline document from CPDR-FFPE-ID-650_2020-01-28_13-46-22.sky.zip

11 May 2020 16:27:33,984 INFO : 100% Done

11 May 2020 16:27:33,996 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80299/CPDR-FFPE-ID-650_2020-01-28_13-46-22.sky.zip into the system

11 May 2020 16:27:33,997 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80303/CPDR-FFPE-ID-629_2020-01-28_13-47-17/CPDR-FFPE-ID-629.skyd into the system

11 May 2020 16:27:33,998 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80303/CPDR-FFPE-ID-629_2020-01-28_13-47-17/CPDR-FFPE-ID-629.skyd into the system

11 May 2020 16:27:33,998 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80303/CPDR-FFPE-ID-629_2020-01-28_13-47-17.sky.zip into the system

11 May 2020 16:27:34,001 INFO : Starting import from CPDR-FFPE-ID-629_2020-01-28_13-47-17.sky.zip

11 May 2020 16:27:34,008 INFO : Starting to import Skyline document from CPDR-FFPE-ID-629_2020-01-28_13-47-17.sky.zip

11 May 2020 16:27:34,016 INFO : Expanding CPDR-FFPE-ID-629.skyd

11 May 2020 16:27:34,209 INFO : Expanding CPDR-FFPE-ID-629.sky.view

11 May 2020 16:27:34,210 INFO : Expanding CPDR-FFPE-ID-629.sky

11 May 2020 16:27:34,218 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:27:34,221 INFO : 5% Done

11 May 2020 16:27:34,411 INFO : Inserting ANXA2

11 May 2020 16:27:34,419 INFO : 15% Done

11 May 2020 16:27:34,528 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:34,528 INFO : Inserting CAMKK2

11 May 2020 16:27:34,531 INFO : 24% Done

11 May 2020 16:27:34,644 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:34,644 INFO : Inserting CCND1

11 May 2020 16:27:34,646 INFO : 29% Done

11 May 2020 16:27:34,726 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:34,726 INFO : Inserting EGFR

11 May 2020 16:27:34,728 INFO : 36% Done

11 May 2020 16:27:34,813 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:34,813 INFO : Inserting ERG_pan

11 May 2020 16:27:34,816 INFO : 43% Done

11 May 2020 16:27:34,917 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:34,917 INFO : Inserting FOLH1

11 May 2020 16:27:34,919 INFO : 47% Done

11 May 2020 16:27:34,965 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:34,965 INFO : Inserting MMP9

11 May 2020 16:27:34,967 INFO : 55% Done

11 May 2020 16:27:35,069 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:35,070 INFO : Inserting MUC1

11 May 2020 16:27:35,072 INFO : 60% Done

11 May 2020 16:27:35,129 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:35,129 INFO : Inserting NCOA2

11 May 2020 16:27:35,132 INFO : 66% Done

11 May 2020 16:27:35,226 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:35,226 INFO : Inserting PSA

11 May 2020 16:27:35,228 INFO : 71% Done

11 May 2020 16:27:35,282 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:35,282 INFO : Inserting SMAD4

11 May 2020 16:27:35,285 INFO : 74% Done

11 May 2020 16:27:35,336 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:35,337 INFO : Inserting SPINK1

11 May 2020 16:27:35,339 INFO : 79% Done

11 May 2020 16:27:35,405 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:35,406 INFO : Inserting SPRC

11 May 2020 16:27:35,408 INFO : 84% Done

11 May 2020 16:27:35,475 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:35,475 INFO : Inserting TFF3

11 May 2020 16:27:35,477 INFO : 88% Done

11 May 2020 16:27:35,532 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:35,533 INFO : Inserting TGFB1

11 May 2020 16:27:35,534 INFO : 90% Done

11 May 2020 16:27:35,560 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:35,560 INFO : Inserting VEGFA

11 May 2020 16:27:35,563 INFO : 98% Done

11 May 2020 16:27:35,673 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:35,673 INFO : Done parsing Skyline document.

11 May 2020 16:27:35,675 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:27:35,703 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:27:35,767 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:27:35,790 INFO : Cleaning up temp tables

11 May 2020 16:27:35,807 INFO : Completed import of Skyline document from CPDR-FFPE-ID-629_2020-01-28_13-47-17.sky.zip

11 May 2020 16:27:35,808 INFO : 100% Done

11 May 2020 16:27:35,821 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80303/CPDR-FFPE-ID-629_2020-01-28_13-47-17.sky.zip into the system

11 May 2020 16:27:35,821 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80304/CPDR-FFPE-ID-749_2020-01-28_13-47-31/CPDR-FFPE-ID-749.skyd into the system

11 May 2020 16:27:35,823 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80304/CPDR-FFPE-ID-749_2020-01-28_13-47-31/CPDR-FFPE-ID-749.skyd into the system

11 May 2020 16:27:35,823 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80304/CPDR-FFPE-ID-749_2020-01-28_13-47-31.sky.zip into the system

11 May 2020 16:27:35,828 INFO : Starting import from CPDR-FFPE-ID-749_2020-01-28_13-47-31.sky.zip

11 May 2020 16:27:35,835 INFO : Starting to import Skyline document from CPDR-FFPE-ID-749_2020-01-28_13-47-31.sky.zip

11 May 2020 16:27:35,843 INFO : Expanding CPDR-FFPE-ID-749.skyd

11 May 2020 16:27:36,064 INFO : Expanding CPDR-FFPE-ID-749.sky.view

11 May 2020 16:27:36,065 INFO : Expanding CPDR-FFPE-ID-749.sky

11 May 2020 16:27:36,074 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:27:36,077 INFO : 6% Done

11 May 2020 16:27:36,324 INFO : Inserting ANXA2

11 May 2020 16:27:36,333 INFO : 15% Done

11 May 2020 16:27:36,447 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:36,448 INFO : 16% Done

11 May 2020 16:27:36,448 INFO : Inserting CAMKK2

11 May 2020 16:27:36,451 INFO : 23% Done

11 May 2020 16:27:36,567 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:36,567 INFO : 24% Done

11 May 2020 16:27:36,568 INFO : Inserting CCND1

11 May 2020 16:27:36,570 INFO : 28% Done

11 May 2020 16:27:36,652 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:36,652 INFO : Inserting EGFR

11 May 2020 16:27:36,654 INFO : 34% Done

11 May 2020 16:27:36,740 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:36,740 INFO : 36% Done

11 May 2020 16:27:36,740 INFO : Inserting ERG_pan

11 May 2020 16:27:36,743 INFO : 44% Done

11 May 2020 16:27:36,861 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:36,861 INFO : Inserting FOLH1

11 May 2020 16:27:36,863 INFO : 49% Done

11 May 2020 16:27:36,931 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:36,931 INFO : Inserting MMP9

11 May 2020 16:27:36,934 INFO : 58% Done

11 May 2020 16:27:37,059 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:37,059 INFO : Inserting MUC1

11 May 2020 16:27:37,061 INFO : 62% Done

11 May 2020 16:27:37,123 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:37,123 INFO : Inserting NCOA2

11 May 2020 16:27:37,126 INFO : 68% Done

11 May 2020 16:27:37,221 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:37,221 INFO : Inserting PSA

11 May 2020 16:27:37,223 INFO : 72% Done

11 May 2020 16:27:37,278 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:37,278 INFO : 73% Done

11 May 2020 16:27:37,278 INFO : Inserting SMAD4

11 May 2020 16:27:37,280 INFO : 76% Done

11 May 2020 16:27:37,335 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:37,335 INFO : Inserting SPINK1

11 May 2020 16:27:37,337 INFO : 80% Done

11 May 2020 16:27:37,403 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:37,403 INFO : 81% Done

11 May 2020 16:27:37,404 INFO : Inserting SPRC

11 May 2020 16:27:37,406 INFO : 85% Done

11 May 2020 16:27:37,475 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:37,475 INFO : Inserting TFF3

11 May 2020 16:27:37,477 INFO : 89% Done

11 May 2020 16:27:37,535 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:37,535 INFO : Inserting TGFB1

11 May 2020 16:27:37,537 INFO : 91% Done

11 May 2020 16:27:37,563 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:37,563 INFO : Inserting VEGFA

11 May 2020 16:27:37,566 INFO : 98% Done

11 May 2020 16:27:37,667 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:37,667 INFO : Done parsing Skyline document.

11 May 2020 16:27:37,669 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:27:37,698 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:27:37,766 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:27:37,791 INFO : Cleaning up temp tables

11 May 2020 16:27:37,801 INFO : Completed import of Skyline document from CPDR-FFPE-ID-749_2020-01-28_13-47-31.sky.zip

11 May 2020 16:27:37,803 INFO : 100% Done

11 May 2020 16:27:37,814 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80304/CPDR-FFPE-ID-749_2020-01-28_13-47-31.sky.zip into the system

11 May 2020 16:27:37,814 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80300/CPDR-FFPE-ID-845_2020-01-28_13-46-34/CPDR-FFPE-ID-845.skyd into the system

11 May 2020 16:27:37,815 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80300/CPDR-FFPE-ID-845_2020-01-28_13-46-34/CPDR-FFPE-ID-845.skyd into the system

11 May 2020 16:27:37,816 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80300/CPDR-FFPE-ID-845_2020-01-28_13-46-34.sky.zip into the system

11 May 2020 16:27:37,819 INFO : Starting import from CPDR-FFPE-ID-845_2020-01-28_13-46-34.sky.zip

11 May 2020 16:27:37,826 INFO : Starting to import Skyline document from CPDR-FFPE-ID-845_2020-01-28_13-46-34.sky.zip

11 May 2020 16:27:37,835 INFO : Expanding CPDR-FFPE-ID-845.skyd

11 May 2020 16:27:38,081 INFO : Expanding CPDR-FFPE-ID-845.sky.view

11 May 2020 16:27:38,082 INFO : Expanding CPDR-FFPE-ID-845.sky

11 May 2020 16:27:38,091 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:27:38,095 INFO : 6% Done

11 May 2020 16:27:38,293 INFO : Inserting ANXA2

11 May 2020 16:27:38,301 INFO : 14% Done

11 May 2020 16:27:38,394 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:38,394 INFO : Inserting CAMKK2

11 May 2020 16:27:38,397 INFO : 21% Done

11 May 2020 16:27:38,494 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:38,494 INFO : Inserting CCND1

11 May 2020 16:27:38,496 INFO : 25% Done

11 May 2020 16:27:38,577 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:38,577 INFO : Inserting EGFR

11 May 2020 16:27:38,580 INFO : 33% Done

11 May 2020 16:27:38,703 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:38,703 INFO : Inserting ERG_pan

11 May 2020 16:27:38,706 INFO : 43% Done

11 May 2020 16:27:38,850 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:38,850 INFO : Inserting FOLH1

11 May 2020 16:27:38,852 INFO : 48% Done

11 May 2020 16:27:38,930 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:38,930 INFO : Inserting MMP9

11 May 2020 16:27:38,934 INFO : 57% Done

11 May 2020 16:27:39,070 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:39,070 INFO : Inserting MUC1

11 May 2020 16:27:39,073 INFO : 63% Done

11 May 2020 16:27:39,151 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:39,151 INFO : Inserting NCOA2

11 May 2020 16:27:39,154 INFO : 69% Done

11 May 2020 16:27:39,236 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:39,236 INFO : Inserting PSA

11 May 2020 16:27:39,238 INFO : 74% Done

11 May 2020 16:27:39,304 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:39,305 INFO : Inserting SMAD4

11 May 2020 16:27:39,307 INFO : 77% Done

11 May 2020 16:27:39,379 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:39,379 INFO : Inserting SPINK1

11 May 2020 16:27:39,381 INFO : 82% Done

11 May 2020 16:27:39,445 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:39,445 INFO : Inserting SPRC

11 May 2020 16:27:39,447 INFO : 85% Done

11 May 2020 16:27:39,510 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:39,510 INFO : Inserting TFF3

11 May 2020 16:27:39,512 INFO : 90% Done

11 May 2020 16:27:39,578 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:39,579 INFO : Inserting TGFB1

11 May 2020 16:27:39,580 INFO : 93% Done

11 May 2020 16:27:39,618 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:39,618 INFO : Inserting VEGFA

11 May 2020 16:27:39,621 INFO : 98% Done

11 May 2020 16:27:39,707 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:39,707 INFO : Done parsing Skyline document.

11 May 2020 16:27:39,709 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:27:39,738 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:27:39,808 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:27:39,834 INFO : Cleaning up temp tables

11 May 2020 16:27:40,316 INFO : Completed import of Skyline document from CPDR-FFPE-ID-845_2020-01-28_13-46-34.sky.zip

11 May 2020 16:27:40,317 INFO : 100% Done

11 May 2020 16:27:40,330 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80300/CPDR-FFPE-ID-845_2020-01-28_13-46-34.sky.zip into the system

11 May 2020 16:27:40,330 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80361/CPDR-FFPE-ID-733_2020-01-29_12-17-07/CPDR-FFPE-ID-733.skyd into the system

11 May 2020 16:27:40,331 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80361/CPDR-FFPE-ID-733_2020-01-29_12-17-07/CPDR-FFPE-ID-733.skyd into the system

11 May 2020 16:27:40,332 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80361/CPDR-FFPE-ID-733_2020-01-29_12-17-07.sky.zip into the system

11 May 2020 16:27:40,335 INFO : Starting import from CPDR-FFPE-ID-733_2020-01-29_12-17-07.sky.zip

11 May 2020 16:27:40,342 INFO : Starting to import Skyline document from CPDR-FFPE-ID-733_2020-01-29_12-17-07.sky.zip

11 May 2020 16:27:40,351 INFO : Expanding CPDR-FFPE-ID-733.skyd

11 May 2020 16:27:40,577 INFO : Expanding CPDR-FFPE-ID-733.sky.view

11 May 2020 16:27:40,577 INFO : Expanding CPDR-FFPE-ID-733.sky

11 May 2020 16:27:40,586 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:27:40,589 INFO : 5% Done

11 May 2020 16:27:40,788 INFO : Inserting ANXA2

11 May 2020 16:27:40,795 INFO : 14% Done

11 May 2020 16:27:40,896 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:40,896 INFO : Inserting CAMKK2

11 May 2020 16:27:40,899 INFO : 21% Done

11 May 2020 16:27:41,001 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:41,001 INFO : Inserting CCND1

11 May 2020 16:27:41,003 INFO : 26% Done

11 May 2020 16:27:41,079 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:41,080 INFO : Inserting EGFR

11 May 2020 16:27:41,082 INFO : 32% Done

11 May 2020 16:27:41,176 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:41,176 INFO : 34% Done

11 May 2020 16:27:41,177 INFO : Inserting ERG_pan

11 May 2020 16:27:41,179 INFO : 40% Done

11 May 2020 16:27:41,270 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:41,270 INFO : Inserting FOLH1

11 May 2020 16:27:41,273 INFO : 44% Done

11 May 2020 16:27:41,331 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:41,331 INFO : Inserting MMP9

11 May 2020 16:27:41,334 INFO : 54% Done

11 May 2020 16:27:41,458 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:41,458 INFO : Inserting MUC1

11 May 2020 16:27:41,460 INFO : 58% Done

11 May 2020 16:27:41,537 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:41,537 INFO : Inserting NCOA2

11 May 2020 16:27:41,540 INFO : 66% Done

11 May 2020 16:27:41,631 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:41,631 INFO : Inserting PSA

11 May 2020 16:27:41,633 INFO : 70% Done

11 May 2020 16:27:41,698 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:41,698 INFO : 71% Done

11 May 2020 16:27:41,698 INFO : Inserting SMAD4

11 May 2020 16:27:41,700 INFO : 75% Done

11 May 2020 16:27:41,779 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:41,779 INFO : Inserting SPINK1

11 May 2020 16:27:41,781 INFO : 80% Done

11 May 2020 16:27:41,848 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:41,848 INFO : Inserting SPRC

11 May 2020 16:27:41,850 INFO : 85% Done

11 May 2020 16:27:41,909 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:41,910 INFO : Inserting TFF3

11 May 2020 16:27:41,912 INFO : 90% Done

11 May 2020 16:27:41,978 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:41,978 INFO : Inserting TGFB1

11 May 2020 16:27:41,980 INFO : 91% Done

11 May 2020 16:27:42,005 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:42,005 INFO : Inserting VEGFA

11 May 2020 16:27:42,008 INFO : 98% Done

11 May 2020 16:27:42,102 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:42,102 INFO : Done parsing Skyline document.

11 May 2020 16:27:42,104 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:27:42,134 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:27:42,200 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:27:42,225 INFO : Cleaning up temp tables

11 May 2020 16:27:42,693 INFO : Completed import of Skyline document from CPDR-FFPE-ID-733_2020-01-29_12-17-07.sky.zip

11 May 2020 16:27:42,695 INFO : 100% Done

11 May 2020 16:27:42,707 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80361/CPDR-FFPE-ID-733_2020-01-29_12-17-07.sky.zip into the system

11 May 2020 16:27:42,707 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80365/CPDR-FFPE-ID-856_2020-01-29_12-18-05/CPDR-FFPE-ID-856.skyd into the system

11 May 2020 16:27:42,709 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80365/CPDR-FFPE-ID-856_2020-01-29_12-18-05/CPDR-FFPE-ID-856.skyd into the system

11 May 2020 16:27:42,709 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80365/CPDR-FFPE-ID-856_2020-01-29_12-18-05.sky.zip into the system

11 May 2020 16:27:42,713 INFO : Starting import from CPDR-FFPE-ID-856_2020-01-29_12-18-05.sky.zip

11 May 2020 16:27:42,720 INFO : Starting to import Skyline document from CPDR-FFPE-ID-856_2020-01-29_12-18-05.sky.zip

11 May 2020 16:27:42,728 INFO : Expanding CPDR-FFPE-ID-856.skyd

11 May 2020 16:27:42,971 INFO : Expanding CPDR-FFPE-ID-856.sky.view

11 May 2020 16:27:42,972 INFO : Expanding CPDR-FFPE-ID-856.sky

11 May 2020 16:27:42,980 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:27:42,983 INFO : 5% Done

11 May 2020 16:27:43,205 INFO : Inserting ANXA2

11 May 2020 16:27:43,214 INFO : 14% Done

11 May 2020 16:27:43,327 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:43,327 INFO : Inserting CAMKK2

11 May 2020 16:27:43,330 INFO : 23% Done

11 May 2020 16:27:43,445 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:43,445 INFO : Inserting CCND1

11 May 2020 16:27:43,448 INFO : 28% Done

11 May 2020 16:27:43,551 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:43,552 INFO : Inserting EGFR

11 May 2020 16:27:43,555 INFO : 34% Done

11 May 2020 16:27:43,643 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:43,643 INFO : Inserting ERG_pan

11 May 2020 16:27:43,646 INFO : 40% Done

11 May 2020 16:27:43,741 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:43,741 INFO : Inserting FOLH1

11 May 2020 16:27:43,743 INFO : 43% Done

11 May 2020 16:27:43,799 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:43,799 INFO : Inserting MMP9

11 May 2020 16:27:43,802 INFO : 52% Done

11 May 2020 16:27:43,909 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:43,909 INFO : Inserting MUC1

11 May 2020 16:27:43,912 INFO : 56% Done

11 May 2020 16:27:43,987 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:43,987 INFO : 57% Done

11 May 2020 16:27:43,987 INFO : Inserting NCOA2

11 May 2020 16:27:43,990 INFO : 64% Done

11 May 2020 16:27:44,097 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:44,097 INFO : Inserting PSA

11 May 2020 16:27:44,099 INFO : 69% Done

11 May 2020 16:27:44,160 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:44,160 INFO : Inserting SMAD4

11 May 2020 16:27:44,163 INFO : 74% Done

11 May 2020 16:27:44,249 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:44,250 INFO : 75% Done

11 May 2020 16:27:44,250 INFO : Inserting SPINK1

11 May 2020 16:27:44,252 INFO : 80% Done

11 May 2020 16:27:44,318 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:44,318 INFO : Inserting SPRC

11 May 2020 16:27:44,320 INFO : 84% Done

11 May 2020 16:27:44,383 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:44,383 INFO : Inserting TFF3

11 May 2020 16:27:44,385 INFO : 89% Done

11 May 2020 16:27:44,449 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:44,449 INFO : Inserting TGFB1

11 May 2020 16:27:44,451 INFO : 90% Done

11 May 2020 16:27:44,468 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:44,468 INFO : Inserting VEGFA

11 May 2020 16:27:44,471 INFO : 98% Done

11 May 2020 16:27:44,604 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:44,604 INFO : Done parsing Skyline document.

11 May 2020 16:27:44,606 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:27:44,636 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:27:44,707 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:27:44,733 INFO : Cleaning up temp tables

11 May 2020 16:27:45,214 INFO : Completed import of Skyline document from CPDR-FFPE-ID-856_2020-01-29_12-18-05.sky.zip

11 May 2020 16:27:45,216 INFO : 100% Done

11 May 2020 16:27:45,229 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80365/CPDR-FFPE-ID-856_2020-01-29_12-18-05.sky.zip into the system

11 May 2020 16:27:45,229 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80367/CPDR-FFPE-ID-786_2020-01-29_12-18-30/CPDR-FFPE-ID-786.skyd into the system

11 May 2020 16:27:45,231 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80367/CPDR-FFPE-ID-786_2020-01-29_12-18-30/CPDR-FFPE-ID-786.skyd into the system

11 May 2020 16:27:45,231 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80367/CPDR-FFPE-ID-786_2020-01-29_12-18-30.sky.zip into the system

11 May 2020 16:27:45,235 INFO : Starting import from CPDR-FFPE-ID-786_2020-01-29_12-18-30.sky.zip

11 May 2020 16:27:45,242 INFO : Starting to import Skyline document from CPDR-FFPE-ID-786_2020-01-29_12-18-30.sky.zip

11 May 2020 16:27:45,253 INFO : Expanding CPDR-FFPE-ID-786.skyd

11 May 2020 16:27:45,556 INFO : Expanding CPDR-FFPE-ID-786.sky.view

11 May 2020 16:27:45,557 INFO : Expanding CPDR-FFPE-ID-786.sky

11 May 2020 16:27:45,566 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:27:45,570 INFO : 5% Done

11 May 2020 16:27:45,794 INFO : 8% Done

11 May 2020 16:27:45,794 INFO : Inserting ANXA2

11 May 2020 16:27:45,802 INFO : 13% Done

11 May 2020 16:27:45,918 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:45,919 INFO : Inserting CAMKK2

11 May 2020 16:27:45,921 INFO : 20% Done

11 May 2020 16:27:46,055 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:46,055 INFO : Inserting CCND1

11 May 2020 16:27:46,058 INFO : 25% Done

11 May 2020 16:27:46,149 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:46,149 INFO : Inserting EGFR

11 May 2020 16:27:46,152 INFO : 32% Done

11 May 2020 16:27:46,271 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:46,272 INFO : Inserting ERG_pan

11 May 2020 16:27:46,275 INFO : 40% Done

11 May 2020 16:27:46,404 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:46,404 INFO : Inserting FOLH1

11 May 2020 16:27:46,407 INFO : 45% Done

11 May 2020 16:27:46,495 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:46,496 INFO : 46% Done

11 May 2020 16:27:46,496 INFO : Inserting MMP9

11 May 2020 16:27:46,499 INFO : 54% Done

11 May 2020 16:27:46,618 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:46,618 INFO : Inserting MUC1

11 May 2020 16:27:46,621 INFO : 60% Done

11 May 2020 16:27:46,732 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:46,732 INFO : Inserting NCOA2

11 May 2020 16:27:46,735 INFO : 67% Done

11 May 2020 16:27:46,884 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:46,884 INFO : Inserting PSA

11 May 2020 16:27:46,886 INFO : 71% Done

11 May 2020 16:27:46,959 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:46,959 INFO : Inserting SMAD4

11 May 2020 16:27:46,962 INFO : 77% Done

11 May 2020 16:27:47,056 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:47,056 INFO : Inserting SPINK1

11 May 2020 16:27:47,058 INFO : 81% Done

11 May 2020 16:27:47,129 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:47,129 INFO : Inserting SPRC

11 May 2020 16:27:47,132 INFO : 85% Done

11 May 2020 16:27:47,213 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:47,213 INFO : Inserting TFF3

11 May 2020 16:27:47,215 INFO : 90% Done

11 May 2020 16:27:47,279 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:47,279 INFO : Inserting TGFB1

11 May 2020 16:27:47,280 INFO : 91% Done

11 May 2020 16:27:47,304 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:47,305 INFO : Inserting VEGFA

11 May 2020 16:27:47,308 INFO : 98% Done

11 May 2020 16:27:47,424 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:47,425 INFO : Done parsing Skyline document.

11 May 2020 16:27:47,427 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:27:47,458 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:27:47,538 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:27:47,570 INFO : Cleaning up temp tables

11 May 2020 16:27:47,584 INFO : Completed import of Skyline document from CPDR-FFPE-ID-786_2020-01-29_12-18-30.sky.zip

11 May 2020 16:27:47,586 INFO : 100% Done

11 May 2020 16:27:47,598 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80367/CPDR-FFPE-ID-786_2020-01-29_12-18-30.sky.zip into the system

11 May 2020 16:27:47,599 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80373/CPDR-FFPE-ID-935_2020-01-29_12-19-55/CPDR-FFPE-ID-935.skyd into the system

11 May 2020 16:27:47,601 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80373/CPDR-FFPE-ID-935_2020-01-29_12-19-55/CPDR-FFPE-ID-935.skyd into the system

11 May 2020 16:27:47,601 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80373/CPDR-FFPE-ID-935_2020-01-29_12-19-55.sky.zip into the system

11 May 2020 16:27:47,606 INFO : Starting import from CPDR-FFPE-ID-935_2020-01-29_12-19-55.sky.zip

11 May 2020 16:27:47,614 INFO : Starting to import Skyline document from CPDR-FFPE-ID-935_2020-01-29_12-19-55.sky.zip

11 May 2020 16:27:47,626 INFO : Expanding CPDR-FFPE-ID-935.skyd

11 May 2020 16:27:47,853 INFO : Expanding CPDR-FFPE-ID-935.sky.view

11 May 2020 16:27:47,854 INFO : Expanding CPDR-FFPE-ID-935.sky

11 May 2020 16:27:47,861 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:27:47,865 INFO : 5% Done

11 May 2020 16:27:48,140 INFO : Inserting ANXA2

11 May 2020 16:27:48,148 INFO : 14% Done

11 May 2020 16:27:48,249 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:48,249 INFO : Inserting CAMKK2

11 May 2020 16:27:48,253 INFO : 21% Done

11 May 2020 16:27:48,355 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:48,355 INFO : Inserting CCND1

11 May 2020 16:27:48,359 INFO : 25% Done

11 May 2020 16:27:48,436 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:48,436 INFO : 27% Done

11 May 2020 16:27:48,436 INFO : Inserting EGFR

11 May 2020 16:27:48,439 INFO : 33% Done

11 May 2020 16:27:48,540 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:48,540 INFO : Inserting ERG_pan

11 May 2020 16:27:48,543 INFO : 40% Done

11 May 2020 16:27:48,641 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:48,641 INFO : Inserting FOLH1

11 May 2020 16:27:48,644 INFO : 44% Done

11 May 2020 16:27:48,713 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:48,714 INFO : Inserting MMP9

11 May 2020 16:27:48,717 INFO : 54% Done

11 May 2020 16:27:48,862 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:48,862 INFO : Inserting MUC1

11 May 2020 16:27:48,865 INFO : 58% Done

11 May 2020 16:27:48,935 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:48,935 INFO : 59% Done

11 May 2020 16:27:48,936 INFO : Inserting NCOA2

11 May 2020 16:27:48,938 INFO : 66% Done

11 May 2020 16:27:49,030 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:49,030 INFO : Inserting PSA

11 May 2020 16:27:49,032 INFO : 69% Done

11 May 2020 16:27:49,098 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:49,098 INFO : Inserting SMAD4

11 May 2020 16:27:49,100 INFO : 75% Done

11 May 2020 16:27:49,188 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:49,188 INFO : Inserting SPINK1

11 May 2020 16:27:49,191 INFO : 80% Done

11 May 2020 16:27:49,260 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:49,260 INFO : Inserting SPRC

11 May 2020 16:27:49,263 INFO : 83% Done

11 May 2020 16:27:49,327 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:49,327 INFO : Inserting TFF3

11 May 2020 16:27:49,329 INFO : 88% Done

11 May 2020 16:27:49,401 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:49,401 INFO : Inserting TGFB1

11 May 2020 16:27:49,403 INFO : 91% Done

11 May 2020 16:27:49,431 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:49,431 INFO : Inserting VEGFA

11 May 2020 16:27:49,434 INFO : 98% Done

11 May 2020 16:27:49,541 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:49,541 INFO : Done parsing Skyline document.

11 May 2020 16:27:49,543 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:27:49,572 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:27:49,635 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:27:49,659 INFO : Cleaning up temp tables

11 May 2020 16:27:50,178 INFO : Completed import of Skyline document from CPDR-FFPE-ID-935_2020-01-29_12-19-55.sky.zip

11 May 2020 16:27:50,180 INFO : 100% Done

11 May 2020 16:27:50,193 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80373/CPDR-FFPE-ID-935_2020-01-29_12-19-55.sky.zip into the system

11 May 2020 16:27:50,194 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80379/CPDR-FFPE-ID-639_2020-01-29_12-21-18/CPDR-FFPE-ID-639.skyd into the system

11 May 2020 16:27:50,195 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80379/CPDR-FFPE-ID-639_2020-01-29_12-21-18/CPDR-FFPE-ID-639.skyd into the system

11 May 2020 16:27:50,195 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80379/CPDR-FFPE-ID-639_2020-01-29_12-21-18.sky.zip into the system

11 May 2020 16:27:50,198 INFO : Starting import from CPDR-FFPE-ID-639_2020-01-29_12-21-18.sky.zip

11 May 2020 16:27:50,205 INFO : Starting to import Skyline document from CPDR-FFPE-ID-639_2020-01-29_12-21-18.sky.zip

11 May 2020 16:27:50,214 INFO : Expanding CPDR-FFPE-ID-639.skyd

11 May 2020 16:27:50,456 INFO : Expanding CPDR-FFPE-ID-639.sky.view

11 May 2020 16:27:50,457 INFO : Expanding CPDR-FFPE-ID-639.sky

11 May 2020 16:27:50,466 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:27:50,469 INFO : 5% Done

11 May 2020 16:27:50,665 INFO : Inserting ANXA2

11 May 2020 16:27:50,673 INFO : 14% Done

11 May 2020 16:27:50,813 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:50,813 INFO : Inserting CAMKK2

11 May 2020 16:27:50,816 INFO : 23% Done

11 May 2020 16:27:50,948 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:50,948 INFO : Inserting CCND1

11 May 2020 16:27:50,950 INFO : 28% Done

11 May 2020 16:27:51,046 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:51,046 INFO : 29% Done

11 May 2020 16:27:51,046 INFO : Inserting EGFR

11 May 2020 16:27:51,049 INFO : 35% Done

11 May 2020 16:27:51,143 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:51,143 INFO : Inserting ERG_pan

11 May 2020 16:27:51,146 INFO : 40% Done

11 May 2020 16:27:51,238 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:51,239 INFO : Inserting FOLH1

11 May 2020 16:27:51,241 INFO : 43% Done

11 May 2020 16:27:51,305 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:51,306 INFO : Inserting MMP9

11 May 2020 16:27:51,309 INFO : 51% Done

11 May 2020 16:27:51,438 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:51,438 INFO : Inserting MUC1

11 May 2020 16:27:51,441 INFO : 56% Done

11 May 2020 16:27:51,523 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:51,523 INFO : Inserting NCOA2

11 May 2020 16:27:51,526 INFO : 63% Done

11 May 2020 16:27:51,628 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:51,629 INFO : Inserting PSA

11 May 2020 16:27:51,631 INFO : 67% Done

11 May 2020 16:27:51,703 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:51,703 INFO : Inserting SMAD4

11 May 2020 16:27:51,706 INFO : 74% Done

11 May 2020 16:27:51,812 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:51,812 INFO : Inserting SPINK1

11 May 2020 16:27:51,815 INFO : 78% Done

11 May 2020 16:27:51,910 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:51,910 INFO : Inserting SPRC

11 May 2020 16:27:51,913 INFO : 83% Done

11 May 2020 16:27:52,005 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:52,005 INFO : Inserting TFF3

11 May 2020 16:27:52,007 INFO : 89% Done

11 May 2020 16:27:52,078 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:52,078 INFO : Inserting TGFB1

11 May 2020 16:27:52,080 INFO : 90% Done

11 May 2020 16:27:52,119 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:52,119 INFO : Inserting VEGFA

11 May 2020 16:27:52,123 INFO : 98% Done

11 May 2020 16:27:52,290 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:52,290 INFO : Done parsing Skyline document.

11 May 2020 16:27:52,293 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:27:52,323 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:27:52,397 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:27:52,442 INFO : Cleaning up temp tables

11 May 2020 16:27:52,897 INFO : Completed import of Skyline document from CPDR-FFPE-ID-639_2020-01-29_12-21-18.sky.zip

11 May 2020 16:27:52,898 INFO : 100% Done

11 May 2020 16:27:52,911 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80379/CPDR-FFPE-ID-639_2020-01-29_12-21-18.sky.zip into the system

11 May 2020 16:27:52,911 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80380/CPDR-FFPE-ID-703_2020-01-29_12-21-28/CPDR-FFPE-ID-703.skyd into the system

11 May 2020 16:27:52,913 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80380/CPDR-FFPE-ID-703_2020-01-29_12-21-28/CPDR-FFPE-ID-703.skyd into the system

11 May 2020 16:27:52,913 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80380/CPDR-FFPE-ID-703_2020-01-29_12-21-28.sky.zip into the system

11 May 2020 16:27:52,917 INFO : Starting import from CPDR-FFPE-ID-703_2020-01-29_12-21-28.sky.zip

11 May 2020 16:27:52,924 INFO : Starting to import Skyline document from CPDR-FFPE-ID-703_2020-01-29_12-21-28.sky.zip

11 May 2020 16:27:52,932 INFO : Expanding CPDR-FFPE-ID-703.skyd

11 May 2020 16:27:53,149 INFO : Expanding CPDR-FFPE-ID-703.sky.view

11 May 2020 16:27:53,150 INFO : Expanding CPDR-FFPE-ID-703.sky

11 May 2020 16:27:53,159 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:27:53,162 INFO : 5% Done

11 May 2020 16:27:53,441 INFO : Inserting ANXA2

11 May 2020 16:27:53,449 INFO : 13% Done

11 May 2020 16:27:53,607 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:53,608 INFO : 14% Done

11 May 2020 16:27:53,608 INFO : Inserting CAMKK2

11 May 2020 16:27:53,611 INFO : 22% Done

11 May 2020 16:27:53,729 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:53,729 INFO : Inserting CCND1

11 May 2020 16:27:53,732 INFO : 27% Done

11 May 2020 16:27:53,809 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:53,809 INFO : Inserting EGFR

11 May 2020 16:27:53,812 INFO : 34% Done

11 May 2020 16:27:53,910 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:53,911 INFO : Inserting ERG_pan

11 May 2020 16:27:53,915 INFO : 41% Done

11 May 2020 16:27:54,047 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:54,047 INFO : Inserting FOLH1

11 May 2020 16:27:54,050 INFO : 45% Done

11 May 2020 16:27:54,109 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:54,110 INFO : 46% Done

11 May 2020 16:27:54,110 INFO : Inserting MMP9

11 May 2020 16:27:54,114 INFO : 54% Done

11 May 2020 16:27:54,225 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:54,226 INFO : Inserting MUC1

11 May 2020 16:27:54,229 INFO : 59% Done

11 May 2020 16:27:54,303 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:54,303 INFO : Inserting NCOA2

11 May 2020 16:27:54,306 INFO : 65% Done

11 May 2020 16:27:54,392 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:54,392 INFO : Inserting PSA

11 May 2020 16:27:54,394 INFO : 71% Done

11 May 2020 16:27:54,459 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:54,459 INFO : Inserting SMAD4

11 May 2020 16:27:54,462 INFO : 75% Done

11 May 2020 16:27:54,540 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:54,541 INFO : Inserting SPINK1

11 May 2020 16:27:54,543 INFO : 80% Done

11 May 2020 16:27:54,608 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:54,609 INFO : Inserting SPRC

11 May 2020 16:27:54,611 INFO : 84% Done

11 May 2020 16:27:54,677 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:54,677 INFO : 85% Done

11 May 2020 16:27:54,677 INFO : Inserting TFF3

11 May 2020 16:27:54,680 INFO : 89% Done

11 May 2020 16:27:54,747 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:54,748 INFO : Inserting TGFB1

11 May 2020 16:27:54,749 INFO : 90% Done

11 May 2020 16:27:54,769 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:54,769 INFO : Inserting VEGFA

11 May 2020 16:27:54,772 INFO : 98% Done

11 May 2020 16:27:54,876 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:54,876 INFO : Done parsing Skyline document.

11 May 2020 16:27:54,879 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:27:54,908 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:27:54,969 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:27:54,992 INFO : Cleaning up temp tables

11 May 2020 16:27:55,465 INFO : Completed import of Skyline document from CPDR-FFPE-ID-703_2020-01-29_12-21-28.sky.zip

11 May 2020 16:27:55,467 INFO : 100% Done

11 May 2020 16:27:55,479 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80380/CPDR-FFPE-ID-703_2020-01-29_12-21-28.sky.zip into the system

11 May 2020 16:27:55,479 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80390/CPDR-FFPE-ID-889_2020-01-29_12-23-55/CPDR-FFPE-ID-889.skyd into the system

11 May 2020 16:27:55,481 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80390/CPDR-FFPE-ID-889_2020-01-29_12-23-55/CPDR-FFPE-ID-889.skyd into the system

11 May 2020 16:27:55,481 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80390/CPDR-FFPE-ID-889_2020-01-29_12-23-55.sky.zip into the system

11 May 2020 16:27:55,484 INFO : Starting import from CPDR-FFPE-ID-889_2020-01-29_12-23-55.sky.zip

11 May 2020 16:27:55,491 INFO : Starting to import Skyline document from CPDR-FFPE-ID-889_2020-01-29_12-23-55.sky.zip

11 May 2020 16:27:55,500 INFO : Expanding CPDR-FFPE-ID-889.skyd

11 May 2020 16:27:55,744 INFO : Expanding CPDR-FFPE-ID-889.sky.view

11 May 2020 16:27:55,745 INFO : Expanding CPDR-FFPE-ID-889.sky

11 May 2020 16:27:55,754 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:27:55,757 INFO : 5% Done

11 May 2020 16:27:55,962 INFO : Inserting ANXA2

11 May 2020 16:27:55,972 INFO : 14% Done

11 May 2020 16:27:56,120 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:56,120 INFO : Inserting CAMKK2

11 May 2020 16:27:56,125 INFO : 22% Done

11 May 2020 16:27:56,263 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:56,263 INFO : Inserting CCND1

11 May 2020 16:27:56,268 INFO : 27% Done

11 May 2020 16:27:56,365 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:56,365 INFO : 28% Done

11 May 2020 16:27:56,365 INFO : Inserting EGFR

11 May 2020 16:27:56,368 INFO : 34% Done

11 May 2020 16:27:56,472 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:56,472 INFO : Inserting ERG_pan

11 May 2020 16:27:56,475 INFO : 41% Done

11 May 2020 16:27:56,605 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:56,606 INFO : 42% Done

11 May 2020 16:27:56,606 INFO : Inserting FOLH1

11 May 2020 16:27:56,608 INFO : 45% Done

11 May 2020 16:27:56,666 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:56,667 INFO : Inserting MMP9

11 May 2020 16:27:56,670 INFO : 52% Done

11 May 2020 16:27:56,784 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:56,785 INFO : Inserting MUC1

11 May 2020 16:27:56,789 INFO : 57% Done

11 May 2020 16:27:56,911 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:56,911 INFO : Inserting NCOA2

11 May 2020 16:27:56,916 INFO : 65% Done

11 May 2020 16:27:57,042 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:57,042 INFO : Inserting PSA

11 May 2020 16:27:57,045 INFO : 69% Done

11 May 2020 16:27:57,107 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:57,107 INFO : Inserting SMAD4

11 May 2020 16:27:57,110 INFO : 74% Done

11 May 2020 16:27:57,193 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:57,194 INFO : Inserting SPINK1

11 May 2020 16:27:57,197 INFO : 78% Done

11 May 2020 16:27:57,261 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:57,261 INFO : Inserting SPRC

11 May 2020 16:27:57,264 INFO : 83% Done

11 May 2020 16:27:57,332 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:57,332 INFO : 84% Done

11 May 2020 16:27:57,333 INFO : Inserting TFF3

11 May 2020 16:27:57,335 INFO : 88% Done

11 May 2020 16:27:57,399 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:57,399 INFO : Inserting TGFB1

11 May 2020 16:27:57,401 INFO : 90% Done

11 May 2020 16:27:57,428 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:57,429 INFO : Inserting VEGFA

11 May 2020 16:27:57,433 INFO : 98% Done

11 May 2020 16:27:57,560 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:57,560 INFO : Done parsing Skyline document.

11 May 2020 16:27:57,563 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:27:57,592 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:27:57,663 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:27:57,693 INFO : Cleaning up temp tables

11 May 2020 16:27:58,110 INFO : Completed import of Skyline document from CPDR-FFPE-ID-889_2020-01-29_12-23-55.sky.zip

11 May 2020 16:27:58,112 INFO : 100% Done

11 May 2020 16:27:58,124 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80390/CPDR-FFPE-ID-889_2020-01-29_12-23-55.sky.zip into the system

11 May 2020 16:27:58,124 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80392/CPDR-FFPE-ID-768_2020-01-29_12-24-20/CPDR-FFPE-ID-768.skyd into the system

11 May 2020 16:27:58,126 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80392/CPDR-FFPE-ID-768_2020-01-29_12-24-20/CPDR-FFPE-ID-768.skyd into the system

11 May 2020 16:27:58,126 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80392/CPDR-FFPE-ID-768_2020-01-29_12-24-20.sky.zip into the system

11 May 2020 16:27:58,129 INFO : Starting import from CPDR-FFPE-ID-768_2020-01-29_12-24-20.sky.zip

11 May 2020 16:27:58,137 INFO : Starting to import Skyline document from CPDR-FFPE-ID-768_2020-01-29_12-24-20.sky.zip

11 May 2020 16:27:58,146 INFO : Expanding CPDR-FFPE-ID-768.skyd

11 May 2020 16:27:58,359 INFO : Expanding CPDR-FFPE-ID-768.sky.view

11 May 2020 16:27:58,360 INFO : Expanding CPDR-FFPE-ID-768.sky

11 May 2020 16:27:58,369 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:27:58,372 INFO : 5% Done

11 May 2020 16:27:58,574 INFO : Inserting ANXA2

11 May 2020 16:27:58,583 INFO : 14% Done

11 May 2020 16:27:58,702 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:58,702 INFO : Inserting CAMKK2

11 May 2020 16:27:58,706 INFO : 23% Done

11 May 2020 16:27:58,825 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:58,825 INFO : Inserting CCND1

11 May 2020 16:27:58,828 INFO : 29% Done

11 May 2020 16:27:58,933 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:58,933 INFO : Inserting EGFR

11 May 2020 16:27:58,936 INFO : 33% Done

11 May 2020 16:27:59,029 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:59,030 INFO : Inserting ERG_pan

11 May 2020 16:27:59,032 INFO : 39% Done

11 May 2020 16:27:59,117 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:59,118 INFO : Inserting FOLH1

11 May 2020 16:27:59,120 INFO : 44% Done

11 May 2020 16:27:59,174 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:59,174 INFO : Inserting MMP9

11 May 2020 16:27:59,177 INFO : 52% Done

11 May 2020 16:27:59,298 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:59,298 INFO : Inserting MUC1

11 May 2020 16:27:59,300 INFO : 57% Done

11 May 2020 16:27:59,369 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:59,369 INFO : Inserting NCOA2

11 May 2020 16:27:59,372 INFO : 63% Done

11 May 2020 16:27:59,471 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:59,471 INFO : Inserting PSA

11 May 2020 16:27:59,474 INFO : 68% Done

11 May 2020 16:27:59,543 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:59,544 INFO : Inserting SMAD4

11 May 2020 16:27:59,548 INFO : 74% Done

11 May 2020 16:27:59,651 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:59,651 INFO : Inserting SPINK1

11 May 2020 16:27:59,654 INFO : 79% Done

11 May 2020 16:27:59,776 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:59,776 INFO : Inserting SPRC

11 May 2020 16:27:59,779 INFO : 83% Done

11 May 2020 16:27:59,869 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:59,869 INFO : Inserting TFF3

11 May 2020 16:27:59,872 INFO : 88% Done

11 May 2020 16:27:59,944 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:59,944 INFO : Inserting TGFB1

11 May 2020 16:27:59,946 INFO : 90% Done

11 May 2020 16:27:59,978 DEBUG: Total peptides inserted: 1

11 May 2020 16:27:59,979 INFO : Inserting VEGFA

11 May 2020 16:27:59,982 INFO : 98% Done

11 May 2020 16:28:00,097 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:00,097 INFO : Done parsing Skyline document.

11 May 2020 16:28:00,099 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:28:00,124 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:28:00,181 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:28:00,202 INFO : Cleaning up temp tables

11 May 2020 16:28:00,635 INFO : Completed import of Skyline document from CPDR-FFPE-ID-768_2020-01-29_12-24-20.sky.zip

11 May 2020 16:28:00,637 INFO : 100% Done

11 May 2020 16:28:00,651 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80392/CPDR-FFPE-ID-768_2020-01-29_12-24-20.sky.zip into the system

11 May 2020 16:28:00,651 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80395/CPDR-FFPE-ID-1123_2020-01-29_12-25-21/CPDR-FFPE-ID-1123.skyd into the system

11 May 2020 16:28:00,653 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80395/CPDR-FFPE-ID-1123_2020-01-29_12-25-21/CPDR-FFPE-ID-1123.skyd into the system

11 May 2020 16:28:00,653 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80395/CPDR-FFPE-ID-1123_2020-01-29_12-25-21.sky.zip into the system

11 May 2020 16:28:00,657 INFO : Starting import from CPDR-FFPE-ID-1123_2020-01-29_12-25-21.sky.zip

11 May 2020 16:28:00,664 INFO : Starting to import Skyline document from CPDR-FFPE-ID-1123_2020-01-29_12-25-21.sky.zip

11 May 2020 16:28:00,672 INFO : Expanding CPDR-FFPE-ID-1123.skyd

11 May 2020 16:28:00,926 INFO : Expanding CPDR-FFPE-ID-1123.sky.view

11 May 2020 16:28:00,927 INFO : Expanding CPDR-FFPE-ID-1123.sky

11 May 2020 16:28:00,936 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:28:00,939 INFO : 6% Done

11 May 2020 16:28:01,133 INFO : Inserting ANXA2

11 May 2020 16:28:01,141 INFO : 14% Done

11 May 2020 16:28:01,263 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:01,263 INFO : Inserting CAMKK2

11 May 2020 16:28:01,266 INFO : 22% Done

11 May 2020 16:28:01,396 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:01,396 INFO : Inserting CCND1

11 May 2020 16:28:01,399 INFO : 27% Done

11 May 2020 16:28:01,497 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:01,498 INFO : Inserting EGFR

11 May 2020 16:28:01,502 INFO : 34% Done

11 May 2020 16:28:01,604 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:01,604 INFO : Inserting ERG_pan

11 May 2020 16:28:01,609 INFO : 42% Done

11 May 2020 16:28:01,739 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:01,740 INFO : Inserting FOLH1

11 May 2020 16:28:01,743 INFO : 46% Done

11 May 2020 16:28:01,811 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:01,811 INFO : Inserting MMP9

11 May 2020 16:28:01,814 INFO : 54% Done

11 May 2020 16:28:01,936 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:01,936 INFO : 55% Done

11 May 2020 16:28:01,936 INFO : Inserting MUC1

11 May 2020 16:28:01,938 INFO : 58% Done

11 May 2020 16:28:02,001 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:02,001 INFO : Inserting NCOA2

11 May 2020 16:28:02,004 INFO : 65% Done

11 May 2020 16:28:02,107 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:02,107 INFO : Inserting PSA

11 May 2020 16:28:02,109 INFO : 69% Done

11 May 2020 16:28:02,174 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:02,174 INFO : 70% Done

11 May 2020 16:28:02,174 INFO : Inserting SMAD4

11 May 2020 16:28:02,177 INFO : 74% Done

11 May 2020 16:28:02,269 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:02,270 INFO : Inserting SPINK1

11 May 2020 16:28:02,272 INFO : 80% Done

11 May 2020 16:28:02,350 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:02,350 INFO : Inserting SPRC

11 May 2020 16:28:02,352 INFO : 84% Done

11 May 2020 16:28:02,425 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:02,426 INFO : Inserting TFF3

11 May 2020 16:28:02,428 INFO : 89% Done

11 May 2020 16:28:02,493 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:02,493 INFO : Inserting TGFB1

11 May 2020 16:28:02,495 INFO : 90% Done

11 May 2020 16:28:02,514 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:02,514 INFO : Inserting VEGFA

11 May 2020 16:28:02,517 INFO : 98% Done

11 May 2020 16:28:02,644 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:02,644 INFO : Done parsing Skyline document.

11 May 2020 16:28:02,646 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:28:02,675 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:28:02,747 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:28:02,774 INFO : Cleaning up temp tables

11 May 2020 16:28:02,789 INFO : Completed import of Skyline document from CPDR-FFPE-ID-1123_2020-01-29_12-25-21.sky.zip

11 May 2020 16:28:02,790 INFO : 100% Done

11 May 2020 16:28:02,802 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80395/CPDR-FFPE-ID-1123_2020-01-29_12-25-21.sky.zip into the system

11 May 2020 16:28:02,802 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80409/CPDR-FFPE-ID-1762_2020-01-29_12-32-55/CPDR-FFPE-ID-1762.skyd into the system

11 May 2020 16:28:02,803 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80409/CPDR-FFPE-ID-1762_2020-01-29_12-32-55/CPDR-FFPE-ID-1762.skyd into the system

11 May 2020 16:28:02,803 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80409/CPDR-FFPE-ID-1762_2020-01-29_12-32-55.sky.zip into the system

11 May 2020 16:28:02,807 INFO : Starting import from CPDR-FFPE-ID-1762_2020-01-29_12-32-55.sky.zip

11 May 2020 16:28:02,814 INFO : Starting to import Skyline document from CPDR-FFPE-ID-1762_2020-01-29_12-32-55.sky.zip

11 May 2020 16:28:02,826 INFO : Expanding CPDR-FFPE-ID-1762.skyd

11 May 2020 16:28:03,183 INFO : Expanding CPDR-FFPE-ID-1762.sky.view

11 May 2020 16:28:03,184 INFO : Expanding CPDR-FFPE-ID-1762.sky

11 May 2020 16:28:03,194 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:28:03,198 INFO : 6% Done

11 May 2020 16:28:03,472 INFO : Inserting ANXA2

11 May 2020 16:28:03,480 INFO : 14% Done

11 May 2020 16:28:03,617 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:03,617 INFO : Inserting CAMKK2

11 May 2020 16:28:03,620 INFO : 22% Done

11 May 2020 16:28:03,772 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:03,773 INFO : Inserting CCND1

11 May 2020 16:28:03,776 INFO : 27% Done

11 May 2020 16:28:03,889 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:03,889 INFO : Inserting EGFR

11 May 2020 16:28:03,893 INFO : 34% Done

11 May 2020 16:28:04,026 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:04,026 INFO : 35% Done

11 May 2020 16:28:04,026 INFO : Inserting ERG_pan

11 May 2020 16:28:04,030 INFO : 42% Done

11 May 2020 16:28:04,181 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:04,181 INFO : Inserting FOLH1

11 May 2020 16:28:04,184 INFO : 46% Done

11 May 2020 16:28:04,267 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:04,267 INFO : Inserting MMP9

11 May 2020 16:28:04,271 INFO : 55% Done

11 May 2020 16:28:04,435 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:04,436 INFO : Inserting MUC1

11 May 2020 16:28:04,438 INFO : 60% Done

11 May 2020 16:28:04,546 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:04,547 INFO : Inserting NCOA2

11 May 2020 16:28:04,551 INFO : 67% Done

11 May 2020 16:28:04,675 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:04,676 INFO : Inserting PSA

11 May 2020 16:28:04,678 INFO : 71% Done

11 May 2020 16:28:04,755 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:04,755 INFO : Inserting SMAD4

11 May 2020 16:28:04,757 INFO : 76% Done

11 May 2020 16:28:04,862 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:04,863 INFO : Inserting SPINK1

11 May 2020 16:28:04,865 INFO : 81% Done

11 May 2020 16:28:04,944 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:04,944 INFO : Inserting SPRC

11 May 2020 16:28:04,946 INFO : 85% Done

11 May 2020 16:28:05,024 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:05,024 INFO : Inserting TFF3

11 May 2020 16:28:05,026 INFO : 89% Done

11 May 2020 16:28:05,097 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:05,097 INFO : Inserting TGFB1

11 May 2020 16:28:05,099 INFO : 91% Done

11 May 2020 16:28:05,137 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:05,138 INFO : Inserting VEGFA

11 May 2020 16:28:05,140 INFO : 98% Done

11 May 2020 16:28:05,264 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:05,264 INFO : Done parsing Skyline document.

11 May 2020 16:28:05,266 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:28:05,299 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:28:05,389 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:28:05,423 INFO : Cleaning up temp tables

11 May 2020 16:28:05,439 INFO : Completed import of Skyline document from CPDR-FFPE-ID-1762_2020-01-29_12-32-55.sky.zip

11 May 2020 16:28:05,440 INFO : 100% Done

11 May 2020 16:28:05,453 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80409/CPDR-FFPE-ID-1762_2020-01-29_12-32-55.sky.zip into the system

11 May 2020 16:28:05,453 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80312/CPDR-FFPE-ID-764_2020-01-28_15-04-01/CPDR-FFPE-ID-764.skyd into the system

11 May 2020 16:28:05,454 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80312/CPDR-FFPE-ID-764_2020-01-28_15-04-01/CPDR-FFPE-ID-764.skyd into the system

11 May 2020 16:28:05,455 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80312/CPDR-FFPE-ID-764_2020-01-28_15-04-01.sky.zip into the system

11 May 2020 16:28:05,458 INFO : Starting import from CPDR-FFPE-ID-764_2020-01-28_15-04-01.sky.zip

11 May 2020 16:28:05,466 INFO : Starting to import Skyline document from CPDR-FFPE-ID-764_2020-01-28_15-04-01.sky.zip

11 May 2020 16:28:05,475 INFO : Expanding CPDR-FFPE-ID-764.skyd

11 May 2020 16:28:05,762 INFO : Expanding CPDR-FFPE-ID-764.sky.view

11 May 2020 16:28:05,763 INFO : Expanding CPDR-FFPE-ID-764.sky

11 May 2020 16:28:05,772 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:28:05,776 INFO : 5% Done

11 May 2020 16:28:06,032 INFO : Inserting ANXA2

11 May 2020 16:28:06,038 INFO : 14% Done

11 May 2020 16:28:06,134 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:06,134 INFO : Inserting CAMKK2

11 May 2020 16:28:06,137 INFO : 22% Done

11 May 2020 16:28:06,247 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:06,247 INFO : Inserting CCND1

11 May 2020 16:28:06,249 INFO : 27% Done

11 May 2020 16:28:06,324 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:06,324 INFO : Inserting EGFR

11 May 2020 16:28:06,326 INFO : 33% Done

11 May 2020 16:28:06,418 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:06,419 INFO : Inserting ERG_pan

11 May 2020 16:28:06,422 INFO : 43% Done

11 May 2020 16:28:06,551 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:06,552 INFO : Inserting FOLH1

11 May 2020 16:28:06,554 INFO : 48% Done

11 May 2020 16:28:06,631 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:06,632 INFO : Inserting MMP9

11 May 2020 16:28:06,635 INFO : 57% Done

11 May 2020 16:28:06,757 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:06,758 INFO : Inserting MUC1

11 May 2020 16:28:06,760 INFO : 62% Done

11 May 2020 16:28:06,866 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:06,866 INFO : Inserting NCOA2

11 May 2020 16:28:06,869 INFO : 69% Done

11 May 2020 16:28:06,955 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:06,955 INFO : Inserting PSA

11 May 2020 16:28:06,958 INFO : 73% Done

11 May 2020 16:28:07,043 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:07,044 INFO : Inserting SMAD4

11 May 2020 16:28:07,046 INFO : 76% Done

11 May 2020 16:28:07,115 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:07,115 INFO : Inserting SPINK1

11 May 2020 16:28:07,119 INFO : 80% Done

11 May 2020 16:28:07,191 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:07,191 INFO : Inserting SPRC

11 May 2020 16:28:07,193 INFO : 85% Done

11 May 2020 16:28:07,265 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:07,266 INFO : Inserting TFF3

11 May 2020 16:28:07,268 INFO : 90% Done

11 May 2020 16:28:07,341 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:07,342 INFO : Inserting TGFB1

11 May 2020 16:28:07,343 INFO : 91% Done

11 May 2020 16:28:07,363 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:07,363 INFO : Inserting VEGFA

11 May 2020 16:28:07,366 INFO : 98% Done

11 May 2020 16:28:07,481 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:07,481 INFO : Done parsing Skyline document.

11 May 2020 16:28:07,483 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:28:07,513 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:28:07,590 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:28:07,620 INFO : Cleaning up temp tables

11 May 2020 16:28:08,072 INFO : Completed import of Skyline document from CPDR-FFPE-ID-764_2020-01-28_15-04-01.sky.zip

11 May 2020 16:28:08,074 INFO : 100% Done

11 May 2020 16:28:08,086 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80312/CPDR-FFPE-ID-764_2020-01-28_15-04-01.sky.zip into the system

11 May 2020 16:28:08,086 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80351/CPDR-FFPE-ID-1113_2020-01-29_12-14-46/CPDR-FFPE-ID-1113.skyd into the system

11 May 2020 16:28:08,088 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80351/CPDR-FFPE-ID-1113_2020-01-29_12-14-46/CPDR-FFPE-ID-1113.skyd into the system

11 May 2020 16:28:08,088 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80351/CPDR-FFPE-ID-1113_2020-01-29_12-14-46.sky.zip into the system

11 May 2020 16:28:08,092 INFO : Starting import from CPDR-FFPE-ID-1113_2020-01-29_12-14-46.sky.zip

11 May 2020 16:28:08,099 INFO : Starting to import Skyline document from CPDR-FFPE-ID-1113_2020-01-29_12-14-46.sky.zip

11 May 2020 16:28:08,108 INFO : Expanding CPDR-FFPE-ID-1113.skyd

11 May 2020 16:28:08,351 INFO : Expanding CPDR-FFPE-ID-1113.sky.view

11 May 2020 16:28:08,352 INFO : Expanding CPDR-FFPE-ID-1113.sky

11 May 2020 16:28:08,362 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:28:08,365 INFO : 4% Done

11 May 2020 16:28:08,573 INFO : Inserting ANXA2

11 May 2020 16:28:08,582 INFO : 13% Done

11 May 2020 16:28:08,692 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:08,692 INFO : Inserting CAMKK2

11 May 2020 16:28:08,695 INFO : 19% Done

11 May 2020 16:28:08,800 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:08,801 INFO : Inserting CCND1

11 May 2020 16:28:08,804 INFO : 25% Done

11 May 2020 16:28:08,899 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:08,899 INFO : Inserting EGFR

11 May 2020 16:28:08,902 INFO : 29% Done

11 May 2020 16:28:08,978 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:08,979 INFO : 30% Done

11 May 2020 16:28:08,979 INFO : Inserting ERG_pan

11 May 2020 16:28:08,982 INFO : 38% Done

11 May 2020 16:28:09,112 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:09,112 INFO : Inserting FOLH1

11 May 2020 16:28:09,115 INFO : 42% Done

11 May 2020 16:28:09,179 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:09,180 INFO : Inserting MMP9

11 May 2020 16:28:09,183 INFO : 51% Done

11 May 2020 16:28:09,326 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:09,326 INFO : Inserting MUC1

11 May 2020 16:28:09,329 INFO : 57% Done

11 May 2020 16:28:09,417 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:09,418 INFO : Inserting NCOA2

11 May 2020 16:28:09,422 INFO : 64% Done

11 May 2020 16:28:09,551 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:09,551 INFO : Inserting PSA

11 May 2020 16:28:09,554 INFO : 69% Done

11 May 2020 16:28:09,637 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:09,638 INFO : Inserting SMAD4

11 May 2020 16:28:09,640 INFO : 74% Done

11 May 2020 16:28:09,728 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:09,728 INFO : Inserting SPINK1

11 May 2020 16:28:09,731 INFO : 79% Done

11 May 2020 16:28:09,810 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:09,810 INFO : Inserting SPRC

11 May 2020 16:28:09,813 INFO : 84% Done

11 May 2020 16:28:09,901 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:09,901 INFO : Inserting TFF3

11 May 2020 16:28:09,904 INFO : 89% Done

11 May 2020 16:28:09,980 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:09,980 INFO : Inserting TGFB1

11 May 2020 16:28:09,982 INFO : 91% Done

11 May 2020 16:28:10,018 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:10,019 INFO : Inserting VEGFA

11 May 2020 16:28:10,022 INFO : 98% Done

11 May 2020 16:28:10,124 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:10,125 INFO : Done parsing Skyline document.

11 May 2020 16:28:10,127 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:28:10,155 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:28:10,222 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:28:10,247 INFO : Cleaning up temp tables

11 May 2020 16:28:10,747 INFO : Completed import of Skyline document from CPDR-FFPE-ID-1113_2020-01-29_12-14-46.sky.zip

11 May 2020 16:28:10,749 INFO : 100% Done

11 May 2020 16:28:10,763 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80351/CPDR-FFPE-ID-1113_2020-01-29_12-14-46.sky.zip into the system

11 May 2020 16:28:10,763 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80356/CPDR-FFPE-ID-990_2020-01-29_12-15-59/CPDR-FFPE-ID-990.skyd into the system

11 May 2020 16:28:10,764 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80356/CPDR-FFPE-ID-990_2020-01-29_12-15-59/CPDR-FFPE-ID-990.skyd into the system

11 May 2020 16:28:10,764 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80356/CPDR-FFPE-ID-990_2020-01-29_12-15-59.sky.zip into the system

11 May 2020 16:28:10,768 INFO : Starting import from CPDR-FFPE-ID-990_2020-01-29_12-15-59.sky.zip

11 May 2020 16:28:10,775 INFO : Starting to import Skyline document from CPDR-FFPE-ID-990_2020-01-29_12-15-59.sky.zip

11 May 2020 16:28:10,784 INFO : Expanding CPDR-FFPE-ID-990.skyd

11 May 2020 16:28:11,002 INFO : Expanding CPDR-FFPE-ID-990.sky.view

11 May 2020 16:28:11,003 INFO : Expanding CPDR-FFPE-ID-990.sky

11 May 2020 16:28:11,012 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:28:11,015 INFO : 6% Done

11 May 2020 16:28:11,183 INFO : Inserting ANXA2

11 May 2020 16:28:11,192 INFO : 13% Done

11 May 2020 16:28:11,297 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:11,298 INFO : 14% Done

11 May 2020 16:28:11,298 INFO : Inserting CAMKK2

11 May 2020 16:28:11,301 INFO : 21% Done

11 May 2020 16:28:11,414 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:11,414 INFO : Inserting CCND1

11 May 2020 16:28:11,418 INFO : 27% Done

11 May 2020 16:28:11,503 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:11,503 INFO : Inserting EGFR

11 May 2020 16:28:11,507 INFO : 33% Done

11 May 2020 16:28:11,602 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:11,603 INFO : Inserting ERG_pan

11 May 2020 16:28:11,605 INFO : 41% Done

11 May 2020 16:28:11,693 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:11,693 INFO : Inserting FOLH1

11 May 2020 16:28:11,696 INFO : 45% Done

11 May 2020 16:28:11,750 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:11,750 INFO : Inserting MMP9

11 May 2020 16:28:11,753 INFO : 53% Done

11 May 2020 16:28:11,883 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:11,883 INFO : Inserting MUC1

11 May 2020 16:28:11,887 INFO : 58% Done

11 May 2020 16:28:11,971 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:11,971 INFO : Inserting NCOA2

11 May 2020 16:28:11,974 INFO : 65% Done

11 May 2020 16:28:12,042 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:12,042 INFO : Inserting PSA

11 May 2020 16:28:12,044 INFO : 70% Done

11 May 2020 16:28:12,091 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:12,091 INFO : Inserting SMAD4

11 May 2020 16:28:12,093 INFO : 76% Done

11 May 2020 16:28:12,135 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:12,135 INFO : Inserting SPINK1

11 May 2020 16:28:12,137 INFO : 80% Done

11 May 2020 16:28:12,171 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:12,172 INFO : Inserting SPRC

11 May 2020 16:28:12,174 INFO : 85% Done

11 May 2020 16:28:12,210 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:12,211 INFO : Inserting TFF3

11 May 2020 16:28:12,213 INFO : 90% Done

11 May 2020 16:28:12,249 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:12,249 INFO : Inserting TGFB1

11 May 2020 16:28:12,250 INFO : 91% Done

11 May 2020 16:28:12,261 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:12,261 INFO : Inserting VEGFA

11 May 2020 16:28:12,263 INFO : 98% Done

11 May 2020 16:28:12,314 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:12,315 INFO : Done parsing Skyline document.

11 May 2020 16:28:12,316 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:28:12,329 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:28:12,355 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:28:12,365 INFO : Cleaning up temp tables

11 May 2020 16:28:12,717 INFO : Completed import of Skyline document from CPDR-FFPE-ID-990_2020-01-29_12-15-59.sky.zip

11 May 2020 16:28:12,718 INFO : 100% Done

11 May 2020 16:28:12,727 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80356/CPDR-FFPE-ID-990_2020-01-29_12-15-59.sky.zip into the system

11 May 2020 16:28:12,728 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80357/CPDR-FFPE-ID-945_2020-01-29_12-16-12/CPDR-FFPE-ID-945.skyd into the system

11 May 2020 16:28:12,730 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80357/CPDR-FFPE-ID-945_2020-01-29_12-16-12/CPDR-FFPE-ID-945.skyd into the system

11 May 2020 16:28:12,730 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80357/CPDR-FFPE-ID-945_2020-01-29_12-16-12.sky.zip into the system

11 May 2020 16:28:12,735 INFO : Starting import from CPDR-FFPE-ID-945_2020-01-29_12-16-12.sky.zip

11 May 2020 16:28:12,743 INFO : Starting to import Skyline document from CPDR-FFPE-ID-945_2020-01-29_12-16-12.sky.zip

11 May 2020 16:28:12,758 INFO : Expanding CPDR-FFPE-ID-945.skyd

11 May 2020 16:28:13,090 INFO : Expanding CPDR-FFPE-ID-945.sky.view

11 May 2020 16:28:13,091 INFO : Expanding CPDR-FFPE-ID-945.sky

11 May 2020 16:28:13,102 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:28:13,105 INFO : 6% Done

11 May 2020 16:28:13,408 INFO : Inserting ANXA2

11 May 2020 16:28:13,418 INFO : 13% Done

11 May 2020 16:28:13,561 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:13,562 INFO : 14% Done

11 May 2020 16:28:13,562 INFO : Inserting CAMKK2

11 May 2020 16:28:13,565 INFO : 21% Done

11 May 2020 16:28:13,719 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:13,719 INFO : Inserting CCND1

11 May 2020 16:28:13,723 INFO : 26% Done

11 May 2020 16:28:13,823 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:13,823 INFO : Inserting EGFR

11 May 2020 16:28:13,826 INFO : 34% Done

11 May 2020 16:28:13,936 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:13,936 INFO : Inserting ERG_pan

11 May 2020 16:28:13,940 INFO : 42% Done

11 May 2020 16:28:14,042 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:14,042 INFO : Inserting FOLH1

11 May 2020 16:28:14,043 INFO : 47% Done

11 May 2020 16:28:14,083 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:14,083 INFO : 48% Done

11 May 2020 16:28:14,083 INFO : Inserting MMP9

11 May 2020 16:28:14,085 INFO : 56% Done

11 May 2020 16:28:14,152 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:14,152 INFO : Inserting MUC1

11 May 2020 16:28:14,154 INFO : 63% Done

11 May 2020 16:28:14,209 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:14,209 INFO : Inserting NCOA2

11 May 2020 16:28:14,211 INFO : 69% Done

11 May 2020 16:28:14,257 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:14,257 INFO : Inserting PSA

11 May 2020 16:28:14,258 INFO : 71% Done

11 May 2020 16:28:14,278 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:14,278 INFO : Inserting SMAD4

11 May 2020 16:28:14,280 INFO : 76% Done

11 May 2020 16:28:14,326 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:14,327 INFO : Inserting SPINK1

11 May 2020 16:28:14,328 INFO : 81% Done

11 May 2020 16:28:14,371 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:14,371 INFO : Inserting SPRC

11 May 2020 16:28:14,372 INFO : 85% Done

11 May 2020 16:28:14,406 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:14,406 INFO : Inserting TFF3

11 May 2020 16:28:14,407 INFO : 89% Done

11 May 2020 16:28:14,435 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:14,435 INFO : Inserting TGFB1

11 May 2020 16:28:14,436 INFO : 90% Done

11 May 2020 16:28:14,447 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:14,447 INFO : Inserting VEGFA

11 May 2020 16:28:14,449 INFO : 98% Done

11 May 2020 16:28:14,507 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:14,507 INFO : Done parsing Skyline document.

11 May 2020 16:28:14,508 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:28:14,523 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:28:14,570 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:28:14,584 INFO : Cleaning up temp tables

11 May 2020 16:28:14,835 INFO : Completed import of Skyline document from CPDR-FFPE-ID-945_2020-01-29_12-16-12.sky.zip

11 May 2020 16:28:14,836 INFO : 100% Done

11 May 2020 16:28:14,842 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80357/CPDR-FFPE-ID-945_2020-01-29_12-16-12.sky.zip into the system

11 May 2020 16:28:14,842 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80360/CPDR-FFPE-ID-992_2020-01-29_12-16-52/CPDR-FFPE-ID-992.skyd into the system

11 May 2020 16:28:14,842 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80360/CPDR-FFPE-ID-992_2020-01-29_12-16-52/CPDR-FFPE-ID-992.skyd into the system

11 May 2020 16:28:14,842 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80360/CPDR-FFPE-ID-992_2020-01-29_12-16-52.sky.zip into the system

11 May 2020 16:28:14,844 INFO : Starting import from CPDR-FFPE-ID-992_2020-01-29_12-16-52.sky.zip

11 May 2020 16:28:14,847 INFO : Starting to import Skyline document from CPDR-FFPE-ID-992_2020-01-29_12-16-52.sky.zip

11 May 2020 16:28:14,852 INFO : Expanding CPDR-FFPE-ID-992.skyd

11 May 2020 16:28:14,962 INFO : Expanding CPDR-FFPE-ID-992.sky.view

11 May 2020 16:28:14,963 INFO : Expanding CPDR-FFPE-ID-992.sky

11 May 2020 16:28:14,967 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:28:14,969 INFO : 5% Done

11 May 2020 16:28:15,092 INFO : Inserting ANXA2

11 May 2020 16:28:15,100 INFO : 14% Done

11 May 2020 16:28:15,226 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:15,226 INFO : Inserting CAMKK2

11 May 2020 16:28:15,230 INFO : 24% Done

11 May 2020 16:28:15,385 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:15,385 INFO : Inserting CCND1

11 May 2020 16:28:15,390 INFO : 27% Done

11 May 2020 16:28:15,499 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:15,500 INFO : 29% Done

11 May 2020 16:28:15,500 INFO : Inserting EGFR

11 May 2020 16:28:15,503 INFO : 34% Done

11 May 2020 16:28:15,582 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:15,582 INFO : Inserting ERG_pan

11 May 2020 16:28:15,583 INFO : 40% Done

11 May 2020 16:28:15,628 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:15,628 INFO : Inserting FOLH1

11 May 2020 16:28:15,629 INFO : 45% Done

11 May 2020 16:28:15,658 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:15,659 INFO : Inserting MMP9

11 May 2020 16:28:15,660 INFO : 53% Done

11 May 2020 16:28:15,722 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:15,722 INFO : Inserting MUC1

11 May 2020 16:28:15,723 INFO : 59% Done

11 May 2020 16:28:15,756 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:15,757 INFO : Inserting NCOA2

11 May 2020 16:28:15,758 INFO : 65% Done

11 May 2020 16:28:15,798 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:15,798 INFO : Inserting PSA

11 May 2020 16:28:15,799 INFO : 71% Done

11 May 2020 16:28:15,830 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:15,831 INFO : Inserting SMAD4

11 May 2020 16:28:15,832 INFO : 74% Done

11 May 2020 16:28:15,871 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:15,872 INFO : Inserting SPINK1

11 May 2020 16:28:15,873 INFO : 78% Done

11 May 2020 16:28:15,909 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:15,910 INFO : Inserting SPRC

11 May 2020 16:28:15,911 INFO : 83% Done

11 May 2020 16:28:15,948 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:15,948 INFO : 84% Done

11 May 2020 16:28:15,948 INFO : Inserting TFF3

11 May 2020 16:28:15,949 INFO : 89% Done

11 May 2020 16:28:15,983 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:15,983 INFO : Inserting TGFB1

11 May 2020 16:28:15,984 INFO : 90% Done

11 May 2020 16:28:15,997 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:15,997 INFO : Inserting VEGFA

11 May 2020 16:28:15,999 INFO : 98% Done

11 May 2020 16:28:16,069 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:16,069 INFO : Done parsing Skyline document.

11 May 2020 16:28:16,070 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:28:16,084 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:28:16,115 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:28:16,127 INFO : Cleaning up temp tables

11 May 2020 16:28:16,376 INFO : Completed import of Skyline document from CPDR-FFPE-ID-992_2020-01-29_12-16-52.sky.zip

11 May 2020 16:28:16,377 INFO : 100% Done

11 May 2020 16:28:16,383 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80360/CPDR-FFPE-ID-992_2020-01-29_12-16-52.sky.zip into the system

11 May 2020 16:28:16,384 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80362/CPDR-FFPE-ID-765_2020-01-29_12-17-22/CPDR-FFPE-ID-765.skyd into the system

11 May 2020 16:28:16,385 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80362/CPDR-FFPE-ID-765_2020-01-29_12-17-22/CPDR-FFPE-ID-765.skyd into the system

11 May 2020 16:28:16,385 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80362/CPDR-FFPE-ID-765_2020-01-29_12-17-22.sky.zip into the system

11 May 2020 16:28:16,388 INFO : Starting import from CPDR-FFPE-ID-765_2020-01-29_12-17-22.sky.zip

11 May 2020 16:28:16,391 INFO : Starting to import Skyline document from CPDR-FFPE-ID-765_2020-01-29_12-17-22.sky.zip

11 May 2020 16:28:16,395 INFO : Expanding CPDR-FFPE-ID-765.skyd

11 May 2020 16:28:16,495 INFO : Expanding CPDR-FFPE-ID-765.sky.view

11 May 2020 16:28:16,495 INFO : Expanding CPDR-FFPE-ID-765.sky

11 May 2020 16:28:16,499 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:28:16,501 INFO : 5% Done

11 May 2020 16:28:16,642 INFO : Inserting ANXA2

11 May 2020 16:28:16,648 INFO : 14% Done

11 May 2020 16:28:16,743 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:16,743 INFO : Inserting CAMKK2

11 May 2020 16:28:16,746 INFO : 21% Done

11 May 2020 16:28:16,864 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:16,864 INFO : 22% Done

11 May 2020 16:28:16,864 INFO : Inserting CCND1

11 May 2020 16:28:16,866 INFO : 26% Done

11 May 2020 16:28:16,941 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:16,942 INFO : Inserting EGFR

11 May 2020 16:28:16,943 INFO : 34% Done

11 May 2020 16:28:17,011 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:17,011 INFO : Inserting ERG_pan

11 May 2020 16:28:17,013 INFO : 41% Done

11 May 2020 16:28:17,070 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:17,070 INFO : Inserting FOLH1

11 May 2020 16:28:17,071 INFO : 45% Done

11 May 2020 16:28:17,097 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:17,097 INFO : Inserting MMP9

11 May 2020 16:28:17,098 INFO : 54% Done

11 May 2020 16:28:17,158 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:17,159 INFO : Inserting MUC1

11 May 2020 16:28:17,160 INFO : 59% Done

11 May 2020 16:28:17,201 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:17,201 INFO : Inserting NCOA2

11 May 2020 16:28:17,203 INFO : 66% Done

11 May 2020 16:28:17,245 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:17,245 INFO : Inserting PSA

11 May 2020 16:28:17,246 INFO : 70% Done

11 May 2020 16:28:17,277 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:17,277 INFO : 71% Done

11 May 2020 16:28:17,277 INFO : Inserting SMAD4

11 May 2020 16:28:17,278 INFO : 75% Done

11 May 2020 16:28:17,319 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:17,319 INFO : Inserting SPINK1

11 May 2020 16:28:17,320 INFO : 80% Done

11 May 2020 16:28:17,360 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:17,360 INFO : Inserting SPRC

11 May 2020 16:28:17,362 INFO : 84% Done

11 May 2020 16:28:17,409 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:17,409 INFO : 85% Done

11 May 2020 16:28:17,409 INFO : Inserting TFF3

11 May 2020 16:28:17,411 INFO : 90% Done

11 May 2020 16:28:17,455 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:17,455 INFO : Inserting TGFB1

11 May 2020 16:28:17,456 INFO : 92% Done

11 May 2020 16:28:17,466 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:17,466 INFO : Inserting VEGFA

11 May 2020 16:28:17,467 INFO : 98% Done

11 May 2020 16:28:17,528 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:17,528 INFO : Done parsing Skyline document.

11 May 2020 16:28:17,529 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:28:17,544 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:28:17,573 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:28:17,583 INFO : Cleaning up temp tables

11 May 2020 16:28:17,826 INFO : Completed import of Skyline document from CPDR-FFPE-ID-765_2020-01-29_12-17-22.sky.zip

11 May 2020 16:28:17,827 INFO : 100% Done

11 May 2020 16:28:17,833 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80362/CPDR-FFPE-ID-765_2020-01-29_12-17-22.sky.zip into the system

11 May 2020 16:28:17,833 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80364/CPDR-FFPE-ID-1207_2020-01-29_12-17-49/CPDR-FFPE-ID-1207.skyd into the system

11 May 2020 16:28:17,834 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80364/CPDR-FFPE-ID-1207_2020-01-29_12-17-49/CPDR-FFPE-ID-1207.skyd into the system

11 May 2020 16:28:17,834 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80364/CPDR-FFPE-ID-1207_2020-01-29_12-17-49.sky.zip into the system

11 May 2020 16:28:17,837 INFO : Starting import from CPDR-FFPE-ID-1207_2020-01-29_12-17-49.sky.zip

11 May 2020 16:28:17,840 INFO : Starting to import Skyline document from CPDR-FFPE-ID-1207_2020-01-29_12-17-49.sky.zip

11 May 2020 16:28:17,845 INFO : Expanding CPDR-FFPE-ID-1207.skyd

11 May 2020 16:28:17,940 INFO : Expanding CPDR-FFPE-ID-1207.sky.view

11 May 2020 16:28:17,940 INFO : Expanding CPDR-FFPE-ID-1207.sky

11 May 2020 16:28:17,945 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:28:17,946 INFO : 5% Done

11 May 2020 16:28:18,037 INFO : Inserting ANXA2

11 May 2020 16:28:18,047 INFO : 14% Done

11 May 2020 16:28:18,159 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:18,159 INFO : Inserting CAMKK2

11 May 2020 16:28:18,162 INFO : 22% Done

11 May 2020 16:28:18,271 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:18,272 INFO : Inserting CCND1

11 May 2020 16:28:18,274 INFO : 26% Done

11 May 2020 16:28:18,354 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:18,354 INFO : Inserting EGFR

11 May 2020 16:28:18,357 INFO : 33% Done

11 May 2020 16:28:18,453 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:18,453 INFO : Inserting ERG_pan

11 May 2020 16:28:18,457 INFO : 41% Done

11 May 2020 16:28:18,545 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:18,546 INFO : Inserting FOLH1

11 May 2020 16:28:18,548 INFO : 45% Done

11 May 2020 16:28:18,586 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:18,586 INFO : Inserting MMP9

11 May 2020 16:28:18,589 INFO : 54% Done

11 May 2020 16:28:18,654 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:18,654 INFO : Inserting MUC1

11 May 2020 16:28:18,656 INFO : 59% Done

11 May 2020 16:28:18,719 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:18,719 INFO : Inserting NCOA2

11 May 2020 16:28:18,722 INFO : 65% Done

11 May 2020 16:28:18,774 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:18,774 INFO : Inserting PSA

11 May 2020 16:28:18,776 INFO : 70% Done

11 May 2020 16:28:18,819 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:18,820 INFO : Inserting SMAD4

11 May 2020 16:28:18,822 INFO : 75% Done

11 May 2020 16:28:18,866 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:18,866 INFO : Inserting SPINK1

11 May 2020 16:28:18,869 INFO : 80% Done

11 May 2020 16:28:18,922 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:18,922 INFO : Inserting SPRC

11 May 2020 16:28:18,924 INFO : 84% Done

11 May 2020 16:28:18,964 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:18,965 INFO : 85% Done

11 May 2020 16:28:18,965 INFO : Inserting TFF3

11 May 2020 16:28:18,967 INFO : 89% Done

11 May 2020 16:28:19,015 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:19,015 INFO : Inserting TGFB1

11 May 2020 16:28:19,016 INFO : 91% Done

11 May 2020 16:28:19,028 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:19,028 INFO : Inserting VEGFA

11 May 2020 16:28:19,031 INFO : 98% Done

11 May 2020 16:28:19,120 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:19,120 INFO : Done parsing Skyline document.

11 May 2020 16:28:19,122 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:28:19,150 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:28:19,191 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:28:19,243 INFO : Cleaning up temp tables

11 May 2020 16:28:19,627 INFO : Completed import of Skyline document from CPDR-FFPE-ID-1207_2020-01-29_12-17-49.sky.zip

11 May 2020 16:28:19,629 INFO : 100% Done

11 May 2020 16:28:19,642 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80364/CPDR-FFPE-ID-1207_2020-01-29_12-17-49.sky.zip into the system

11 May 2020 16:28:19,643 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80366/CPDR-FFPE-ID-1013_2020-01-29_12-18-17/CPDR-FFPE-ID-1013.skyd into the system

11 May 2020 16:28:19,644 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80366/CPDR-FFPE-ID-1013_2020-01-29_12-18-17/CPDR-FFPE-ID-1013.skyd into the system

11 May 2020 16:28:19,644 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80366/CPDR-FFPE-ID-1013_2020-01-29_12-18-17.sky.zip into the system

11 May 2020 16:28:19,648 INFO : Starting import from CPDR-FFPE-ID-1013_2020-01-29_12-18-17.sky.zip

11 May 2020 16:28:19,656 INFO : Starting to import Skyline document from CPDR-FFPE-ID-1013_2020-01-29_12-18-17.sky.zip

11 May 2020 16:28:19,663 INFO : Expanding CPDR-FFPE-ID-1013.skyd

11 May 2020 16:28:19,878 INFO : Expanding CPDR-FFPE-ID-1013.sky.view

11 May 2020 16:28:19,879 INFO : Expanding CPDR-FFPE-ID-1013.sky

11 May 2020 16:28:19,888 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:28:19,891 INFO : 5% Done

11 May 2020 16:28:20,076 INFO : Inserting ANXA2

11 May 2020 16:28:20,089 INFO : 14% Done

11 May 2020 16:28:20,190 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:20,191 INFO : Inserting CAMKK2

11 May 2020 16:28:20,195 INFO : 22% Done

11 May 2020 16:28:20,304 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:20,305 INFO : Inserting CCND1

11 May 2020 16:28:20,308 INFO : 27% Done

11 May 2020 16:28:20,392 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:20,392 INFO : Inserting EGFR

11 May 2020 16:28:20,395 INFO : 33% Done

11 May 2020 16:28:20,486 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:20,486 INFO : Inserting ERG_pan

11 May 2020 16:28:20,489 INFO : 42% Done

11 May 2020 16:28:20,609 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:20,609 INFO : Inserting FOLH1

11 May 2020 16:28:20,612 INFO : 46% Done

11 May 2020 16:28:20,666 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:20,666 INFO : Inserting MMP9

11 May 2020 16:28:20,669 INFO : 53% Done

11 May 2020 16:28:20,779 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:20,779 INFO : Inserting MUC1

11 May 2020 16:28:20,781 INFO : 60% Done

11 May 2020 16:28:20,868 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:20,869 INFO : Inserting NCOA2

11 May 2020 16:28:20,871 INFO : 66% Done

11 May 2020 16:28:20,957 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:20,957 INFO : Inserting PSA

11 May 2020 16:28:20,959 INFO : 71% Done

11 May 2020 16:28:21,050 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:21,050 INFO : Inserting SMAD4

11 May 2020 16:28:21,053 INFO : 76% Done

11 May 2020 16:28:21,152 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:21,152 INFO : Inserting SPINK1

11 May 2020 16:28:21,154 INFO : 80% Done

11 May 2020 16:28:21,219 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:21,219 INFO : Inserting SPRC

11 May 2020 16:28:21,221 INFO : 84% Done

11 May 2020 16:28:21,278 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:21,279 INFO : 85% Done

11 May 2020 16:28:21,279 INFO : Inserting TFF3

11 May 2020 16:28:21,281 INFO : 90% Done

11 May 2020 16:28:21,345 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:21,345 INFO : Inserting TGFB1

11 May 2020 16:28:21,347 INFO : 92% Done

11 May 2020 16:28:21,364 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:21,364 INFO : Inserting VEGFA

11 May 2020 16:28:21,367 INFO : 98% Done

11 May 2020 16:28:21,464 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:21,464 INFO : Done parsing Skyline document.

11 May 2020 16:28:21,466 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:28:21,494 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:28:21,556 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:28:21,580 INFO : Cleaning up temp tables

11 May 2020 16:28:22,048 INFO : Completed import of Skyline document from CPDR-FFPE-ID-1013_2020-01-29_12-18-17.sky.zip

11 May 2020 16:28:22,050 INFO : 100% Done

11 May 2020 16:28:22,063 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80366/CPDR-FFPE-ID-1013_2020-01-29_12-18-17.sky.zip into the system

11 May 2020 16:28:22,063 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80372/CPDR-FFPE-ID-787_2020-01-29_12-19-37/CPDR-FFPE-ID-787.skyd into the system

11 May 2020 16:28:22,065 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80372/CPDR-FFPE-ID-787_2020-01-29_12-19-37/CPDR-FFPE-ID-787.skyd into the system

11 May 2020 16:28:22,065 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80372/CPDR-FFPE-ID-787_2020-01-29_12-19-37.sky.zip into the system

11 May 2020 16:28:22,069 INFO : Starting import from CPDR-FFPE-ID-787_2020-01-29_12-19-37.sky.zip

11 May 2020 16:28:22,077 INFO : Starting to import Skyline document from CPDR-FFPE-ID-787_2020-01-29_12-19-37.sky.zip

11 May 2020 16:28:22,087 INFO : Expanding CPDR-FFPE-ID-787.skyd

11 May 2020 16:28:22,370 INFO : Expanding CPDR-FFPE-ID-787.sky.view

11 May 2020 16:28:22,371 INFO : Expanding CPDR-FFPE-ID-787.sky

11 May 2020 16:28:22,379 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:28:22,383 INFO : 5% Done

11 May 2020 16:28:22,594 INFO : Inserting ANXA2

11 May 2020 16:28:22,602 INFO : 13% Done

11 May 2020 16:28:22,713 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:22,713 INFO : Inserting CAMKK2

11 May 2020 16:28:22,716 INFO : 21% Done

11 May 2020 16:28:22,862 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:22,863 INFO : 22% Done

11 May 2020 16:28:22,863 INFO : Inserting CCND1

11 May 2020 16:28:22,866 INFO : 27% Done

11 May 2020 16:28:22,990 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:22,990 INFO : Inserting EGFR

11 May 2020 16:28:22,993 INFO : 34% Done

11 May 2020 16:28:23,102 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:23,102 INFO : Inserting ERG_pan

11 May 2020 16:28:23,105 INFO : 41% Done

11 May 2020 16:28:23,226 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:23,226 INFO : Inserting FOLH1

11 May 2020 16:28:23,228 INFO : 44% Done

11 May 2020 16:28:23,342 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:23,342 INFO : Inserting MMP9

11 May 2020 16:28:23,347 INFO : 51% Done

11 May 2020 16:28:23,488 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:23,489 INFO : 53% Done

11 May 2020 16:28:23,489 INFO : Inserting MUC1

11 May 2020 16:28:23,492 INFO : 57% Done

11 May 2020 16:28:23,617 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:23,618 INFO : Inserting NCOA2

11 May 2020 16:28:23,622 INFO : 64% Done

11 May 2020 16:28:23,753 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:23,754 INFO : Inserting PSA

11 May 2020 16:28:23,757 INFO : 68% Done

11 May 2020 16:28:23,829 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:23,829 INFO : Inserting SMAD4

11 May 2020 16:28:23,832 INFO : 74% Done

11 May 2020 16:28:23,958 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:23,958 INFO : Inserting SPINK1

11 May 2020 16:28:23,962 INFO : 79% Done

11 May 2020 16:28:24,050 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:24,050 INFO : Inserting SPRC

11 May 2020 16:28:24,053 INFO : 84% Done

11 May 2020 16:28:24,141 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:24,142 INFO : Inserting TFF3

11 May 2020 16:28:24,145 INFO : 88% Done

11 May 2020 16:28:24,219 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:24,219 INFO : Inserting TGFB1

11 May 2020 16:28:24,222 INFO : 89% Done

11 May 2020 16:28:24,244 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:24,244 INFO : Inserting VEGFA

11 May 2020 16:28:24,247 INFO : 98% Done

11 May 2020 16:28:24,387 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:24,387 INFO : Done parsing Skyline document.

11 May 2020 16:28:24,390 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:28:24,421 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:28:24,502 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:28:24,534 INFO : Cleaning up temp tables

11 May 2020 16:28:25,010 INFO : Completed import of Skyline document from CPDR-FFPE-ID-787_2020-01-29_12-19-37.sky.zip

11 May 2020 16:28:25,012 INFO : 100% Done

11 May 2020 16:28:25,024 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80372/CPDR-FFPE-ID-787_2020-01-29_12-19-37.sky.zip into the system

11 May 2020 16:28:25,024 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80374/CPDR-FFPE-ID-708_2020-01-29_12-20-14/CPDR-FFPE-ID-708.skyd into the system

11 May 2020 16:28:25,026 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80374/CPDR-FFPE-ID-708_2020-01-29_12-20-14/CPDR-FFPE-ID-708.skyd into the system

11 May 2020 16:28:25,026 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80374/CPDR-FFPE-ID-708_2020-01-29_12-20-14.sky.zip into the system

11 May 2020 16:28:25,030 INFO : Starting import from CPDR-FFPE-ID-708_2020-01-29_12-20-14.sky.zip

11 May 2020 16:28:25,036 INFO : Starting to import Skyline document from CPDR-FFPE-ID-708_2020-01-29_12-20-14.sky.zip

11 May 2020 16:28:25,043 INFO : Expanding CPDR-FFPE-ID-708.skyd

11 May 2020 16:28:25,246 INFO : Expanding CPDR-FFPE-ID-708.sky.view

11 May 2020 16:28:25,247 INFO : Expanding CPDR-FFPE-ID-708.sky

11 May 2020 16:28:25,255 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:28:25,258 INFO : 5% Done

11 May 2020 16:28:25,475 INFO : Inserting ANXA2

11 May 2020 16:28:25,483 INFO : 14% Done

11 May 2020 16:28:25,581 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:25,582 INFO : Inserting CAMKK2

11 May 2020 16:28:25,585 INFO : 22% Done

11 May 2020 16:28:25,704 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:25,704 INFO : Inserting CCND1

11 May 2020 16:28:25,706 INFO : 26% Done

11 May 2020 16:28:25,786 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:25,786 INFO : Inserting EGFR

11 May 2020 16:28:25,789 INFO : 33% Done

11 May 2020 16:28:25,875 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:25,876 INFO : Inserting ERG_pan

11 May 2020 16:28:25,879 INFO : 39% Done

11 May 2020 16:28:25,960 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:25,960 INFO : Inserting FOLH1

11 May 2020 16:28:25,962 INFO : 43% Done

11 May 2020 16:28:26,017 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:26,017 INFO : Inserting MMP9

11 May 2020 16:28:26,020 INFO : 51% Done

11 May 2020 16:28:26,125 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:26,125 INFO : 52% Done

11 May 2020 16:28:26,125 INFO : Inserting MUC1

11 May 2020 16:28:26,127 INFO : 57% Done

11 May 2020 16:28:26,200 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:26,200 INFO : Inserting NCOA2

11 May 2020 16:28:26,203 INFO : 64% Done

11 May 2020 16:28:26,299 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:26,299 INFO : Inserting PSA

11 May 2020 16:28:26,301 INFO : 69% Done

11 May 2020 16:28:26,368 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:26,369 INFO : Inserting SMAD4

11 May 2020 16:28:26,371 INFO : 74% Done

11 May 2020 16:28:26,448 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:26,448 INFO : Inserting SPINK1

11 May 2020 16:28:26,450 INFO : 78% Done

11 May 2020 16:28:26,513 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:26,513 INFO : Inserting SPRC

11 May 2020 16:28:26,515 INFO : 84% Done

11 May 2020 16:28:26,572 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:26,572 INFO : Inserting TFF3

11 May 2020 16:28:26,574 INFO : 89% Done

11 May 2020 16:28:26,638 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:26,638 INFO : Inserting TGFB1

11 May 2020 16:28:26,640 INFO : 90% Done

11 May 2020 16:28:26,664 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:26,664 INFO : Inserting VEGFA

11 May 2020 16:28:26,667 INFO : 98% Done

11 May 2020 16:28:26,768 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:26,768 INFO : Done parsing Skyline document.

11 May 2020 16:28:26,770 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:28:26,798 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:28:26,860 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:28:26,883 INFO : Cleaning up temp tables

11 May 2020 16:28:27,371 INFO : Completed import of Skyline document from CPDR-FFPE-ID-708_2020-01-29_12-20-14.sky.zip

11 May 2020 16:28:27,373 INFO : 100% Done

11 May 2020 16:28:27,386 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80374/CPDR-FFPE-ID-708_2020-01-29_12-20-14.sky.zip into the system

11 May 2020 16:28:27,387 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80375/CPDR-FFPE-ID-847_2020-01-29_12-20-27/CPDR-FFPE-ID-847.skyd into the system

11 May 2020 16:28:27,388 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80375/CPDR-FFPE-ID-847_2020-01-29_12-20-27/CPDR-FFPE-ID-847.skyd into the system

11 May 2020 16:28:27,388 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80375/CPDR-FFPE-ID-847_2020-01-29_12-20-27.sky.zip into the system

11 May 2020 16:28:27,392 INFO : Starting import from CPDR-FFPE-ID-847_2020-01-29_12-20-27.sky.zip

11 May 2020 16:28:27,399 INFO : Starting to import Skyline document from CPDR-FFPE-ID-847_2020-01-29_12-20-27.sky.zip

11 May 2020 16:28:27,411 INFO : Expanding CPDR-FFPE-ID-847.skyd

11 May 2020 16:28:27,689 INFO : Expanding CPDR-FFPE-ID-847.sky.view

11 May 2020 16:28:27,690 INFO : Expanding CPDR-FFPE-ID-847.sky

11 May 2020 16:28:27,699 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:28:27,703 INFO : 5% Done

11 May 2020 16:28:27,993 INFO : Inserting ANXA2

11 May 2020 16:28:28,001 INFO : 15% Done

11 May 2020 16:28:28,153 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:28,154 INFO : Inserting CAMKK2

11 May 2020 16:28:28,158 INFO : 23% Done

11 May 2020 16:28:28,296 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:28,296 INFO : Inserting CCND1

11 May 2020 16:28:28,299 INFO : 28% Done

11 May 2020 16:28:28,414 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:28,414 INFO : Inserting EGFR

11 May 2020 16:28:28,418 INFO : 34% Done

11 May 2020 16:28:28,522 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:28,522 INFO : Inserting ERG_pan

11 May 2020 16:28:28,527 INFO : 42% Done

11 May 2020 16:28:28,666 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:28,666 INFO : Inserting FOLH1

11 May 2020 16:28:28,670 INFO : 46% Done

11 May 2020 16:28:28,750 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:28,750 INFO : Inserting MMP9

11 May 2020 16:28:28,753 INFO : 53% Done

11 May 2020 16:28:28,894 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:28,894 INFO : 54% Done

11 May 2020 16:28:28,895 INFO : Inserting MUC1

11 May 2020 16:28:28,897 INFO : 58% Done

11 May 2020 16:28:28,980 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:28,980 INFO : Inserting NCOA2

11 May 2020 16:28:28,983 INFO : 65% Done

11 May 2020 16:28:29,114 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:29,114 INFO : Inserting PSA

11 May 2020 16:28:29,116 INFO : 68% Done

11 May 2020 16:28:29,185 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:29,185 INFO : Inserting SMAD4

11 May 2020 16:28:29,188 INFO : 74% Done

11 May 2020 16:28:29,304 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:29,305 INFO : Inserting SPINK1

11 May 2020 16:28:29,308 INFO : 79% Done

11 May 2020 16:28:29,437 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:29,437 INFO : Inserting SPRC

11 May 2020 16:28:29,441 INFO : 84% Done

11 May 2020 16:28:29,548 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:29,548 INFO : 85% Done

11 May 2020 16:28:29,549 INFO : Inserting TFF3

11 May 2020 16:28:29,552 INFO : 88% Done

11 May 2020 16:28:29,627 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:29,628 INFO : 89% Done

11 May 2020 16:28:29,628 INFO : Inserting TGFB1

11 May 2020 16:28:29,630 INFO : 90% Done

11 May 2020 16:28:29,660 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:29,661 INFO : Inserting VEGFA

11 May 2020 16:28:29,665 INFO : 98% Done

11 May 2020 16:28:29,856 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:29,856 INFO : Done parsing Skyline document.

11 May 2020 16:28:29,859 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:28:29,891 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:28:29,976 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:28:30,007 INFO : Cleaning up temp tables

11 May 2020 16:28:30,506 INFO : Completed import of Skyline document from CPDR-FFPE-ID-847_2020-01-29_12-20-27.sky.zip

11 May 2020 16:28:30,508 INFO : 100% Done

11 May 2020 16:28:30,520 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80375/CPDR-FFPE-ID-847_2020-01-29_12-20-27.sky.zip into the system

11 May 2020 16:28:30,520 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80377/CPDR-FFPE-ID-735_2020-01-29_12-20-53/CPDR-FFPE-ID-735.skyd into the system

11 May 2020 16:28:30,521 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80377/CPDR-FFPE-ID-735_2020-01-29_12-20-53/CPDR-FFPE-ID-735.skyd into the system

11 May 2020 16:28:30,521 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80377/CPDR-FFPE-ID-735_2020-01-29_12-20-53.sky.zip into the system

11 May 2020 16:28:30,525 INFO : Starting import from CPDR-FFPE-ID-735_2020-01-29_12-20-53.sky.zip

11 May 2020 16:28:30,531 INFO : Starting to import Skyline document from CPDR-FFPE-ID-735_2020-01-29_12-20-53.sky.zip

11 May 2020 16:28:30,543 INFO : Expanding CPDR-FFPE-ID-735.skyd

11 May 2020 16:28:30,852 INFO : Expanding CPDR-FFPE-ID-735.sky.view

11 May 2020 16:28:30,853 INFO : Expanding CPDR-FFPE-ID-735.sky

11 May 2020 16:28:30,863 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:28:30,868 INFO : 4% Done

11 May 2020 16:28:31,144 INFO : Inserting ANXA2

11 May 2020 16:28:31,151 INFO : 13% Done

11 May 2020 16:28:31,309 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:31,309 INFO : Inserting CAMKK2

11 May 2020 16:28:31,313 INFO : 21% Done

11 May 2020 16:28:31,467 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:31,467 INFO : Inserting CCND1

11 May 2020 16:28:31,470 INFO : 27% Done

11 May 2020 16:28:31,606 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:31,606 INFO : Inserting EGFR

11 May 2020 16:28:31,609 INFO : 33% Done

11 May 2020 16:28:31,721 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:31,721 INFO : Inserting ERG_pan

11 May 2020 16:28:31,724 INFO : 39% Done

11 May 2020 16:28:31,863 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:31,863 INFO : Inserting FOLH1

11 May 2020 16:28:31,865 INFO : 43% Done

11 May 2020 16:28:31,938 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:31,938 INFO : Inserting MMP9

11 May 2020 16:28:31,941 INFO : 50% Done

11 May 2020 16:28:32,082 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:32,082 INFO : Inserting MUC1

11 May 2020 16:28:32,084 INFO : 54% Done

11 May 2020 16:28:32,174 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:32,175 INFO : Inserting NCOA2

11 May 2020 16:28:32,178 INFO : 61% Done

11 May 2020 16:28:32,334 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:32,334 INFO : Inserting PSA

11 May 2020 16:28:32,336 INFO : 67% Done

11 May 2020 16:28:32,435 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:32,435 INFO : Inserting SMAD4

11 May 2020 16:28:32,438 INFO : 73% Done

11 May 2020 16:28:32,548 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:32,548 INFO : Inserting SPINK1

11 May 2020 16:28:32,551 INFO : 77% Done

11 May 2020 16:28:32,654 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:32,654 INFO : Inserting SPRC

11 May 2020 16:28:32,657 INFO : 83% Done

11 May 2020 16:28:32,775 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:32,775 INFO : Inserting TFF3

11 May 2020 16:28:32,777 INFO : 89% Done

11 May 2020 16:28:32,880 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:32,880 INFO : Inserting TGFB1

11 May 2020 16:28:32,882 INFO : 91% Done

11 May 2020 16:28:32,924 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:32,924 INFO : Inserting VEGFA

11 May 2020 16:28:32,927 INFO : 98% Done

11 May 2020 16:28:33,089 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:33,090 INFO : Done parsing Skyline document.

11 May 2020 16:28:33,092 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:28:33,123 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:28:33,211 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:28:33,244 INFO : Cleaning up temp tables

11 May 2020 16:28:33,754 INFO : Completed import of Skyline document from CPDR-FFPE-ID-735_2020-01-29_12-20-53.sky.zip

11 May 2020 16:28:33,756 INFO : 100% Done

11 May 2020 16:28:33,769 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80377/CPDR-FFPE-ID-735_2020-01-29_12-20-53.sky.zip into the system

11 May 2020 16:28:33,769 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80378/CPDR-FFPE-ID-756_2020-01-29_12-21-06/CPDR-FFPE-ID-756.skyd into the system

11 May 2020 16:28:33,770 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80378/CPDR-FFPE-ID-756_2020-01-29_12-21-06/CPDR-FFPE-ID-756.skyd into the system

11 May 2020 16:28:33,770 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80378/CPDR-FFPE-ID-756_2020-01-29_12-21-06.sky.zip into the system

11 May 2020 16:28:33,774 INFO : Starting import from CPDR-FFPE-ID-756_2020-01-29_12-21-06.sky.zip

11 May 2020 16:28:33,781 INFO : Starting to import Skyline document from CPDR-FFPE-ID-756_2020-01-29_12-21-06.sky.zip

11 May 2020 16:28:33,791 INFO : Expanding CPDR-FFPE-ID-756.skyd

11 May 2020 16:28:34,034 INFO : Expanding CPDR-FFPE-ID-756.sky.view

11 May 2020 16:28:34,035 INFO : Expanding CPDR-FFPE-ID-756.sky

11 May 2020 16:28:34,044 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:28:34,047 INFO : 6% Done

11 May 2020 16:28:34,285 INFO : Inserting ANXA2

11 May 2020 16:28:34,292 INFO : 15% Done

11 May 2020 16:28:34,410 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:34,410 INFO : Inserting CAMKK2

11 May 2020 16:28:34,413 INFO : 23% Done

11 May 2020 16:28:34,534 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:34,534 INFO : Inserting CCND1

11 May 2020 16:28:34,537 INFO : 29% Done

11 May 2020 16:28:34,634 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:34,634 INFO : Inserting EGFR

11 May 2020 16:28:34,637 INFO : 35% Done

11 May 2020 16:28:34,722 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:34,722 INFO : Inserting ERG_pan

11 May 2020 16:28:34,725 INFO : 41% Done

11 May 2020 16:28:34,815 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:34,815 INFO : Inserting FOLH1

11 May 2020 16:28:34,817 INFO : 45% Done

11 May 2020 16:28:34,867 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:34,867 INFO : Inserting MMP9

11 May 2020 16:28:34,870 INFO : 52% Done

11 May 2020 16:28:34,975 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:34,975 INFO : 53% Done

11 May 2020 16:28:34,975 INFO : Inserting MUC1

11 May 2020 16:28:34,978 INFO : 57% Done

11 May 2020 16:28:35,049 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:35,049 INFO : Inserting NCOA2

11 May 2020 16:28:35,052 INFO : 64% Done

11 May 2020 16:28:35,162 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:35,162 INFO : Inserting PSA

11 May 2020 16:28:35,164 INFO : 68% Done

11 May 2020 16:28:35,224 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:35,224 INFO : Inserting SMAD4

11 May 2020 16:28:35,226 INFO : 73% Done

11 May 2020 16:28:35,292 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:35,292 INFO : Inserting SPINK1

11 May 2020 16:28:35,295 INFO : 77% Done

11 May 2020 16:28:35,379 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:35,379 INFO : Inserting SPRC

11 May 2020 16:28:35,381 INFO : 84% Done

11 May 2020 16:28:35,469 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:35,469 INFO : Inserting TFF3

11 May 2020 16:28:35,471 INFO : 87% Done

11 May 2020 16:28:35,530 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:35,530 INFO : Inserting TGFB1

11 May 2020 16:28:35,532 INFO : 90% Done

11 May 2020 16:28:35,556 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:35,556 INFO : Inserting VEGFA

11 May 2020 16:28:35,559 INFO : 98% Done

11 May 2020 16:28:35,688 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:35,688 INFO : Done parsing Skyline document.

11 May 2020 16:28:35,690 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:28:35,719 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:28:35,793 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:28:35,820 INFO : Cleaning up temp tables

11 May 2020 16:28:36,356 INFO : Completed import of Skyline document from CPDR-FFPE-ID-756_2020-01-29_12-21-06.sky.zip

11 May 2020 16:28:36,358 INFO : 100% Done

11 May 2020 16:28:36,370 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80378/CPDR-FFPE-ID-756_2020-01-29_12-21-06.sky.zip into the system

11 May 2020 16:28:36,371 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80382/CPDR-FFPE-ID-704_2020-01-29_12-21-56/CPDR-FFPE-ID-704.skyd into the system

11 May 2020 16:28:36,372 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80382/CPDR-FFPE-ID-704_2020-01-29_12-21-56/CPDR-FFPE-ID-704.skyd into the system

11 May 2020 16:28:36,372 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80382/CPDR-FFPE-ID-704_2020-01-29_12-21-56.sky.zip into the system

11 May 2020 16:28:36,376 INFO : Starting import from CPDR-FFPE-ID-704_2020-01-29_12-21-56.sky.zip

11 May 2020 16:28:36,383 INFO : Starting to import Skyline document from CPDR-FFPE-ID-704_2020-01-29_12-21-56.sky.zip

11 May 2020 16:28:36,398 INFO : Expanding CPDR-FFPE-ID-704.skyd

11 May 2020 16:28:36,807 INFO : Expanding CPDR-FFPE-ID-704.sky.view

11 May 2020 16:28:36,808 INFO : Expanding CPDR-FFPE-ID-704.sky

11 May 2020 16:28:36,819 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:28:36,823 INFO : 5% Done

11 May 2020 16:28:37,157 INFO : Inserting ANXA2

11 May 2020 16:28:37,166 INFO : 13% Done

11 May 2020 16:28:37,331 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:37,331 INFO : Inserting CAMKK2

11 May 2020 16:28:37,335 INFO : 21% Done

11 May 2020 16:28:37,512 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:37,512 INFO : Inserting CCND1

11 May 2020 16:28:37,515 INFO : 25% Done

11 May 2020 16:28:37,658 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:37,659 INFO : Inserting EGFR

11 May 2020 16:28:37,662 INFO : 33% Done

11 May 2020 16:28:37,832 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:37,832 INFO : Inserting ERG_pan

11 May 2020 16:28:37,836 INFO : 41% Done

11 May 2020 16:28:38,038 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:38,038 INFO : Inserting FOLH1

11 May 2020 16:28:38,040 INFO : 45% Done

11 May 2020 16:28:38,140 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:38,140 INFO : Inserting MMP9

11 May 2020 16:28:38,144 INFO : 54% Done

11 May 2020 16:28:38,340 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:38,340 INFO : Inserting MUC1

11 May 2020 16:28:38,344 INFO : 60% Done

11 May 2020 16:28:38,488 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:38,488 INFO : Inserting NCOA2

11 May 2020 16:28:38,492 INFO : 67% Done

11 May 2020 16:28:38,658 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:38,659 INFO : Inserting PSA

11 May 2020 16:28:38,661 INFO : 71% Done

11 May 2020 16:28:38,750 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:38,750 INFO : Inserting SMAD4

11 May 2020 16:28:38,753 INFO : 75% Done

11 May 2020 16:28:38,862 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:38,863 INFO : Inserting SPINK1

11 May 2020 16:28:38,865 INFO : 79% Done

11 May 2020 16:28:38,980 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:38,980 INFO : Inserting SPRC

11 May 2020 16:28:38,983 INFO : 84% Done

11 May 2020 16:28:39,095 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:39,095 INFO : Inserting TFF3

11 May 2020 16:28:39,097 INFO : 88% Done

11 May 2020 16:28:39,200 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:39,201 INFO : Inserting TGFB1

11 May 2020 16:28:39,203 INFO : 91% Done

11 May 2020 16:28:39,254 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:39,254 INFO : Inserting VEGFA

11 May 2020 16:28:39,257 INFO : 98% Done

11 May 2020 16:28:39,439 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:39,439 INFO : Done parsing Skyline document.

11 May 2020 16:28:39,441 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:28:39,476 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:28:39,597 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:28:39,643 INFO : Cleaning up temp tables

11 May 2020 16:28:39,660 INFO : Completed import of Skyline document from CPDR-FFPE-ID-704_2020-01-29_12-21-56.sky.zip

11 May 2020 16:28:39,661 INFO : 100% Done

11 May 2020 16:28:39,674 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80382/CPDR-FFPE-ID-704_2020-01-29_12-21-56.sky.zip into the system

11 May 2020 16:28:39,674 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80352/CPDR-FFPE-ID-731_2020-01-29_12-15-00/CPDR-FFPE-ID-731.skyd into the system

11 May 2020 16:28:39,676 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80352/CPDR-FFPE-ID-731_2020-01-29_12-15-00/CPDR-FFPE-ID-731.skyd into the system

11 May 2020 16:28:39,677 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80352/CPDR-FFPE-ID-731_2020-01-29_12-15-00.sky.zip into the system

11 May 2020 16:28:39,681 INFO : Starting import from CPDR-FFPE-ID-731_2020-01-29_12-15-00.sky.zip

11 May 2020 16:28:39,689 INFO : Starting to import Skyline document from CPDR-FFPE-ID-731_2020-01-29_12-15-00.sky.zip

11 May 2020 16:28:39,704 INFO : Expanding CPDR-FFPE-ID-731.skyd

11 May 2020 16:28:39,991 INFO : Expanding CPDR-FFPE-ID-731.sky.view

11 May 2020 16:28:39,992 INFO : Expanding CPDR-FFPE-ID-731.sky

11 May 2020 16:28:40,001 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:28:40,005 INFO : 6% Done

11 May 2020 16:28:40,236 INFO : Inserting ANXA2

11 May 2020 16:28:40,244 INFO : 14% Done

11 May 2020 16:28:40,375 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:40,375 INFO : Inserting CAMKK2

11 May 2020 16:28:40,378 INFO : 24% Done

11 May 2020 16:28:40,516 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:40,516 INFO : Inserting CCND1

11 May 2020 16:28:40,519 INFO : 29% Done

11 May 2020 16:28:40,626 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:40,626 INFO : Inserting EGFR

11 May 2020 16:28:40,629 INFO : 35% Done

11 May 2020 16:28:40,720 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:40,720 INFO : Inserting ERG_pan

11 May 2020 16:28:40,722 INFO : 40% Done

11 May 2020 16:28:40,816 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:40,816 INFO : 41% Done

11 May 2020 16:28:40,817 INFO : Inserting FOLH1

11 May 2020 16:28:40,819 INFO : 45% Done

11 May 2020 16:28:40,880 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:40,880 INFO : Inserting MMP9

11 May 2020 16:28:40,883 INFO : 52% Done

11 May 2020 16:28:40,995 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:40,995 INFO : Inserting MUC1

11 May 2020 16:28:40,997 INFO : 55% Done

11 May 2020 16:28:41,050 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:41,050 INFO : Inserting NCOA2

11 May 2020 16:28:41,053 INFO : 62% Done

11 May 2020 16:28:41,158 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:41,158 INFO : Inserting PSA

11 May 2020 16:28:41,160 INFO : 67% Done

11 May 2020 16:28:41,226 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:41,226 INFO : Inserting SMAD4

11 May 2020 16:28:41,229 INFO : 73% Done

11 May 2020 16:28:41,321 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:41,321 INFO : Inserting SPINK1

11 May 2020 16:28:41,324 INFO : 78% Done

11 May 2020 16:28:41,416 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:41,416 INFO : Inserting SPRC

11 May 2020 16:28:41,418 INFO : 84% Done

11 May 2020 16:28:41,508 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:41,508 INFO : Inserting TFF3

11 May 2020 16:28:41,510 INFO : 88% Done

11 May 2020 16:28:41,576 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:41,576 INFO : Inserting TGFB1

11 May 2020 16:28:41,577 INFO : 90% Done

11 May 2020 16:28:41,602 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:41,602 INFO : Inserting VEGFA

11 May 2020 16:28:41,605 INFO : 98% Done

11 May 2020 16:28:41,740 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:41,741 INFO : Done parsing Skyline document.

11 May 2020 16:28:41,743 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:28:41,773 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:28:41,850 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:28:41,888 INFO : Cleaning up temp tables

11 May 2020 16:28:41,899 INFO : Completed import of Skyline document from CPDR-FFPE-ID-731_2020-01-29_12-15-00.sky.zip

11 May 2020 16:28:41,901 INFO : 100% Done

11 May 2020 16:28:41,912 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80352/CPDR-FFPE-ID-731_2020-01-29_12-15-00.sky.zip into the system

11 May 2020 16:28:41,913 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80353/CPDR-FFPE-ID-922_2020-01-29_12-15-14/CPDR-FFPE-ID-922.skyd into the system

11 May 2020 16:28:41,914 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80353/CPDR-FFPE-ID-922_2020-01-29_12-15-14/CPDR-FFPE-ID-922.skyd into the system

11 May 2020 16:28:41,914 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80353/CPDR-FFPE-ID-922_2020-01-29_12-15-14.sky.zip into the system

11 May 2020 16:28:41,918 INFO : Starting import from CPDR-FFPE-ID-922_2020-01-29_12-15-14.sky.zip

11 May 2020 16:28:41,925 INFO : Starting to import Skyline document from CPDR-FFPE-ID-922_2020-01-29_12-15-14.sky.zip

11 May 2020 16:28:41,934 INFO : Expanding CPDR-FFPE-ID-922.skyd

11 May 2020 16:28:42,172 INFO : Expanding CPDR-FFPE-ID-922.sky.view

11 May 2020 16:28:42,173 INFO : Expanding CPDR-FFPE-ID-922.sky

11 May 2020 16:28:42,182 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:28:42,185 INFO : 6% Done

11 May 2020 16:28:42,396 INFO : Inserting ANXA2

11 May 2020 16:28:42,405 INFO : 13% Done

11 May 2020 16:28:42,509 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:42,509 INFO : Inserting CAMKK2

11 May 2020 16:28:42,512 INFO : 20% Done

11 May 2020 16:28:42,614 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:42,614 INFO : Inserting CCND1

11 May 2020 16:28:42,617 INFO : 26% Done

11 May 2020 16:28:42,724 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:42,724 INFO : Inserting EGFR

11 May 2020 16:28:42,727 INFO : 32% Done

11 May 2020 16:28:42,822 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:42,822 INFO : Inserting ERG_pan

11 May 2020 16:28:42,825 INFO : 40% Done

11 May 2020 16:28:42,941 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:42,942 INFO : Inserting FOLH1

11 May 2020 16:28:42,944 INFO : 44% Done

11 May 2020 16:28:43,005 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:43,005 INFO : Inserting MMP9

11 May 2020 16:28:43,008 INFO : 50% Done

11 May 2020 16:28:43,118 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:43,118 INFO : 51% Done

11 May 2020 16:28:43,118 INFO : Inserting MUC1

11 May 2020 16:28:43,121 INFO : 56% Done

11 May 2020 16:28:43,192 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:43,192 INFO : Inserting NCOA2

11 May 2020 16:28:43,195 INFO : 62% Done

11 May 2020 16:28:43,300 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:43,300 INFO : 64% Done

11 May 2020 16:28:43,300 INFO : Inserting PSA

11 May 2020 16:28:43,302 INFO : 67% Done

11 May 2020 16:28:43,360 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:43,360 INFO : Inserting SMAD4

11 May 2020 16:28:43,363 INFO : 74% Done

11 May 2020 16:28:43,461 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:43,462 INFO : Inserting SPINK1

11 May 2020 16:28:43,464 INFO : 78% Done

11 May 2020 16:28:43,552 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:43,552 INFO : 79% Done

11 May 2020 16:28:43,552 INFO : Inserting SPRC

11 May 2020 16:28:43,554 INFO : 84% Done

11 May 2020 16:28:43,630 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:43,630 INFO : Inserting TFF3

11 May 2020 16:28:43,632 INFO : 88% Done

11 May 2020 16:28:43,693 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:43,693 INFO : Inserting TGFB1

11 May 2020 16:28:43,694 INFO : 89% Done

11 May 2020 16:28:43,718 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:43,719 INFO : Inserting VEGFA

11 May 2020 16:28:43,722 INFO : 98% Done

11 May 2020 16:28:43,850 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:43,850 INFO : Done parsing Skyline document.

11 May 2020 16:28:43,852 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:28:43,881 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:28:43,958 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:28:43,987 INFO : Cleaning up temp tables

11 May 2020 16:28:44,001 INFO : Completed import of Skyline document from CPDR-FFPE-ID-922_2020-01-29_12-15-14.sky.zip

11 May 2020 16:28:44,002 INFO : 100% Done

11 May 2020 16:28:44,016 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80353/CPDR-FFPE-ID-922_2020-01-29_12-15-14.sky.zip into the system

11 May 2020 16:28:44,016 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80363/CPDR-FFPE-ID-1260_2020-01-29_12-17-36/CPDR-FFPE-ID-1260.skyd into the system

11 May 2020 16:28:44,017 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80363/CPDR-FFPE-ID-1260_2020-01-29_12-17-36/CPDR-FFPE-ID-1260.skyd into the system

11 May 2020 16:28:44,018 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80363/CPDR-FFPE-ID-1260_2020-01-29_12-17-36.sky.zip into the system

11 May 2020 16:28:44,022 INFO : Starting import from CPDR-FFPE-ID-1260_2020-01-29_12-17-36.sky.zip

11 May 2020 16:28:44,031 INFO : Starting to import Skyline document from CPDR-FFPE-ID-1260_2020-01-29_12-17-36.sky.zip

11 May 2020 16:28:44,039 INFO : Expanding CPDR-FFPE-ID-1260.skyd

11 May 2020 16:28:44,236 INFO : Expanding CPDR-FFPE-ID-1260.sky.view

11 May 2020 16:28:44,236 INFO : Expanding CPDR-FFPE-ID-1260.sky

11 May 2020 16:28:44,246 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:28:44,249 INFO : 6% Done

11 May 2020 16:28:44,446 INFO : Inserting ANXA2

11 May 2020 16:28:44,454 INFO : 13% Done

11 May 2020 16:28:44,558 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:44,558 INFO : 14% Done

11 May 2020 16:28:44,558 INFO : Inserting CAMKK2

11 May 2020 16:28:44,561 INFO : 21% Done

11 May 2020 16:28:44,642 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:44,642 INFO : Inserting CCND1

11 May 2020 16:28:44,644 INFO : 25% Done

11 May 2020 16:28:44,701 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:44,701 INFO : 26% Done

11 May 2020 16:28:44,701 INFO : Inserting EGFR

11 May 2020 16:28:44,704 INFO : 33% Done

11 May 2020 16:28:44,776 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:44,776 INFO : Inserting ERG_pan

11 May 2020 16:28:44,778 INFO : 42% Done

11 May 2020 16:28:44,870 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:44,870 INFO : Inserting FOLH1

11 May 2020 16:28:44,872 INFO : 46% Done

11 May 2020 16:28:44,915 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:44,915 INFO : Inserting MMP9

11 May 2020 16:28:44,918 INFO : 54% Done

11 May 2020 16:28:45,001 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:45,001 INFO : Inserting MUC1

11 May 2020 16:28:45,002 INFO : 58% Done

11 May 2020 16:28:45,052 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:45,052 INFO : Inserting NCOA2

11 May 2020 16:28:45,054 INFO : 65% Done

11 May 2020 16:28:45,131 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:45,131 INFO : Inserting PSA

11 May 2020 16:28:45,133 INFO : 69% Done

11 May 2020 16:28:45,188 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:45,188 INFO : Inserting SMAD4

11 May 2020 16:28:45,191 INFO : 75% Done

11 May 2020 16:28:45,257 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:45,257 INFO : Inserting SPINK1

11 May 2020 16:28:45,259 INFO : 80% Done

11 May 2020 16:28:45,317 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:45,317 INFO : Inserting SPRC

11 May 2020 16:28:45,319 INFO : 84% Done

11 May 2020 16:28:45,373 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:45,374 INFO : Inserting TFF3

11 May 2020 16:28:45,376 INFO : 89% Done

11 May 2020 16:28:45,434 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:45,435 INFO : Inserting TGFB1

11 May 2020 16:28:45,436 INFO : 92% Done

11 May 2020 16:28:45,461 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:45,461 INFO : Inserting VEGFA

11 May 2020 16:28:45,463 INFO : 98% Done

11 May 2020 16:28:45,554 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:45,555 INFO : Done parsing Skyline document.

11 May 2020 16:28:45,557 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:28:45,585 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:28:45,648 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:28:45,671 INFO : Cleaning up temp tables

11 May 2020 16:28:45,683 INFO : Completed import of Skyline document from CPDR-FFPE-ID-1260_2020-01-29_12-17-36.sky.zip

11 May 2020 16:28:45,684 INFO : 100% Done

11 May 2020 16:28:45,696 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80363/CPDR-FFPE-ID-1260_2020-01-29_12-17-36.sky.zip into the system

11 May 2020 16:28:45,697 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80381/CPDR-FFPE-ID-985_2020-01-29_12-21-41/CPDR-FFPE-ID-985.skyd into the system

11 May 2020 16:28:45,698 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80381/CPDR-FFPE-ID-985_2020-01-29_12-21-41/CPDR-FFPE-ID-985.skyd into the system

11 May 2020 16:28:45,698 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80381/CPDR-FFPE-ID-985_2020-01-29_12-21-41.sky.zip into the system

11 May 2020 16:28:45,702 INFO : Starting import from CPDR-FFPE-ID-985_2020-01-29_12-21-41.sky.zip

11 May 2020 16:28:45,709 INFO : Starting to import Skyline document from CPDR-FFPE-ID-985_2020-01-29_12-21-41.sky.zip

11 May 2020 16:28:45,720 INFO : Expanding CPDR-FFPE-ID-985.skyd

11 May 2020 16:28:45,994 INFO : Expanding CPDR-FFPE-ID-985.sky.view

11 May 2020 16:28:45,994 INFO : Expanding CPDR-FFPE-ID-985.sky

11 May 2020 16:28:46,004 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:28:46,007 INFO : 5% Done

11 May 2020 16:28:46,592 INFO : Inserting ANXA2

11 May 2020 16:28:46,600 INFO : 13% Done

11 May 2020 16:28:46,699 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:46,699 INFO : Inserting CAMKK2

11 May 2020 16:28:46,702 INFO : 19% Done

11 May 2020 16:28:46,811 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:46,811 INFO : Inserting CCND1

11 May 2020 16:28:46,814 INFO : 25% Done

11 May 2020 16:28:46,940 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:46,941 INFO : Inserting EGFR

11 May 2020 16:28:46,944 INFO : 31% Done

11 May 2020 16:28:47,030 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:47,030 INFO : Inserting ERG_pan

11 May 2020 16:28:47,033 INFO : 36% Done

11 May 2020 16:28:47,122 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:47,122 INFO : 37% Done

11 May 2020 16:28:47,122 INFO : Inserting FOLH1

11 May 2020 16:28:47,124 INFO : 40% Done

11 May 2020 16:28:47,181 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:47,181 INFO : Inserting MMP9

11 May 2020 16:28:47,184 INFO : 48% Done

11 May 2020 16:28:47,298 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:47,298 INFO : Inserting MUC1

11 May 2020 16:28:47,301 INFO : 53% Done

11 May 2020 16:28:47,377 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:47,377 INFO : Inserting NCOA2

11 May 2020 16:28:47,380 INFO : 60% Done

11 May 2020 16:28:47,504 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:47,504 INFO : Inserting PSA

11 May 2020 16:28:47,506 INFO : 65% Done

11 May 2020 16:28:47,574 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:47,574 INFO : 66% Done

11 May 2020 16:28:47,574 INFO : Inserting SMAD4

11 May 2020 16:28:47,577 INFO : 71% Done

11 May 2020 16:28:47,672 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:47,672 INFO : Inserting SPINK1

11 May 2020 16:28:47,675 INFO : 76% Done

11 May 2020 16:28:47,772 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:47,772 INFO : Inserting SPRC

11 May 2020 16:28:47,775 INFO : 83% Done

11 May 2020 16:28:47,863 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:47,863 INFO : Inserting TFF3

11 May 2020 16:28:47,865 INFO : 88% Done

11 May 2020 16:28:47,947 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:47,947 INFO : Inserting TGFB1

11 May 2020 16:28:47,949 INFO : 90% Done

11 May 2020 16:28:47,989 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:47,989 INFO : Inserting VEGFA

11 May 2020 16:28:47,992 INFO : 98% Done

11 May 2020 16:28:48,131 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:48,132 INFO : Done parsing Skyline document.

11 May 2020 16:28:48,134 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:28:48,164 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:28:48,247 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:28:48,278 INFO : Cleaning up temp tables

11 May 2020 16:28:48,294 INFO : Completed import of Skyline document from CPDR-FFPE-ID-985_2020-01-29_12-21-41.sky.zip

11 May 2020 16:28:48,295 INFO : 100% Done

11 May 2020 16:28:48,306 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80381/CPDR-FFPE-ID-985_2020-01-29_12-21-41.sky.zip into the system

11 May 2020 16:28:48,307 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80393/CPDR-FFPE-ID-710_2020-01-29_12-24-40/CPDR-FFPE-ID-710.skyd into the system

11 May 2020 16:28:48,308 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80393/CPDR-FFPE-ID-710_2020-01-29_12-24-40/CPDR-FFPE-ID-710.skyd into the system

11 May 2020 16:28:48,308 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80393/CPDR-FFPE-ID-710_2020-01-29_12-24-40.sky.zip into the system

11 May 2020 16:28:48,312 INFO : Starting import from CPDR-FFPE-ID-710_2020-01-29_12-24-40.sky.zip

11 May 2020 16:28:48,318 INFO : Starting to import Skyline document from CPDR-FFPE-ID-710_2020-01-29_12-24-40.sky.zip

11 May 2020 16:28:48,327 INFO : Expanding CPDR-FFPE-ID-710.skyd

11 May 2020 16:28:48,544 INFO : Expanding CPDR-FFPE-ID-710.sky.view

11 May 2020 16:28:48,544 INFO : Expanding CPDR-FFPE-ID-710.sky

11 May 2020 16:28:48,553 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:28:48,557 INFO : 5% Done

11 May 2020 16:28:48,765 INFO : Inserting ANXA2

11 May 2020 16:28:48,773 INFO : 14% Done

11 May 2020 16:28:48,887 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:48,887 INFO : Inserting CAMKK2

11 May 2020 16:28:48,890 INFO : 23% Done

11 May 2020 16:28:49,006 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:49,006 INFO : Inserting CCND1

11 May 2020 16:28:49,009 INFO : 28% Done

11 May 2020 16:28:49,104 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:49,104 INFO : Inserting EGFR

11 May 2020 16:28:49,106 INFO : 34% Done

11 May 2020 16:28:49,188 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:49,188 INFO : Inserting ERG_pan

11 May 2020 16:28:49,191 INFO : 42% Done

11 May 2020 16:28:49,307 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:49,308 INFO : Inserting FOLH1

11 May 2020 16:28:49,310 INFO : 47% Done

11 May 2020 16:28:49,366 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:49,366 INFO : Inserting MMP9

11 May 2020 16:28:49,369 INFO : 54% Done

11 May 2020 16:28:49,478 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:49,479 INFO : Inserting MUC1

11 May 2020 16:28:49,481 INFO : 60% Done

11 May 2020 16:28:49,563 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:49,564 INFO : Inserting NCOA2

11 May 2020 16:28:49,566 INFO : 68% Done

11 May 2020 16:28:49,656 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:49,656 INFO : Inserting PSA

11 May 2020 16:28:49,659 INFO : 71% Done

11 May 2020 16:28:49,720 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:49,720 INFO : Inserting SMAD4

11 May 2020 16:28:49,722 INFO : 75% Done

11 May 2020 16:28:49,784 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:49,784 INFO : Inserting SPINK1

11 May 2020 16:28:49,787 INFO : 80% Done

11 May 2020 16:28:49,862 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:49,862 INFO : Inserting SPRC

11 May 2020 16:28:49,864 INFO : 86% Done

11 May 2020 16:28:49,938 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:49,938 INFO : Inserting TFF3

11 May 2020 16:28:49,940 INFO : 89% Done

11 May 2020 16:28:49,993 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:49,993 INFO : Inserting TGFB1

11 May 2020 16:28:49,994 INFO : 91% Done

11 May 2020 16:28:50,018 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:50,019 INFO : Inserting VEGFA

11 May 2020 16:28:50,021 INFO : 98% Done

11 May 2020 16:28:50,123 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:50,123 INFO : Done parsing Skyline document.

11 May 2020 16:28:50,125 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:28:50,154 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:28:50,220 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:28:50,245 INFO : Cleaning up temp tables

11 May 2020 16:28:50,257 INFO : Completed import of Skyline document from CPDR-FFPE-ID-710_2020-01-29_12-24-40.sky.zip

11 May 2020 16:28:50,259 INFO : 100% Done

11 May 2020 16:28:50,270 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80393/CPDR-FFPE-ID-710_2020-01-29_12-24-40.sky.zip into the system

11 May 2020 16:28:50,271 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80394/CPDR-FFPE-ID-695_2020-01-29_12-25-00/CPDR-FFPE-ID-695.skyd into the system

11 May 2020 16:28:50,272 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80394/CPDR-FFPE-ID-695_2020-01-29_12-25-00/CPDR-FFPE-ID-695.skyd into the system

11 May 2020 16:28:50,272 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80394/CPDR-FFPE-ID-695_2020-01-29_12-25-00.sky.zip into the system

11 May 2020 16:28:50,276 INFO : Starting import from CPDR-FFPE-ID-695_2020-01-29_12-25-00.sky.zip

11 May 2020 16:28:50,283 INFO : Starting to import Skyline document from CPDR-FFPE-ID-695_2020-01-29_12-25-00.sky.zip

11 May 2020 16:28:50,292 INFO : Expanding CPDR-FFPE-ID-695.skyd

11 May 2020 16:28:50,528 INFO : Expanding CPDR-FFPE-ID-695.sky.view

11 May 2020 16:28:50,528 INFO : Expanding CPDR-FFPE-ID-695.sky

11 May 2020 16:28:50,533 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:28:50,535 INFO : 5% Done

11 May 2020 16:28:50,706 INFO : Inserting ANXA2

11 May 2020 16:28:50,712 INFO : 14% Done

11 May 2020 16:28:50,837 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:50,837 INFO : Inserting CAMKK2

11 May 2020 16:28:50,840 INFO : 23% Done

11 May 2020 16:28:50,957 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:50,957 INFO : Inserting CCND1

11 May 2020 16:28:50,959 INFO : 28% Done

11 May 2020 16:28:51,046 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:51,046 INFO : 29% Done

11 May 2020 16:28:51,046 INFO : Inserting EGFR

11 May 2020 16:28:51,048 INFO : 34% Done

11 May 2020 16:28:51,120 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:51,120 INFO : Inserting ERG_pan

11 May 2020 16:28:51,122 INFO : 41% Done

11 May 2020 16:28:51,216 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:51,216 INFO : Inserting FOLH1

11 May 2020 16:28:51,218 INFO : 45% Done

11 May 2020 16:28:51,263 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:51,263 INFO : Inserting MMP9

11 May 2020 16:28:51,265 INFO : 53% Done

11 May 2020 16:28:51,360 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:51,360 INFO : Inserting MUC1

11 May 2020 16:28:51,362 INFO : 58% Done

11 May 2020 16:28:51,418 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:51,418 INFO : Inserting NCOA2

11 May 2020 16:28:51,420 INFO : 65% Done

11 May 2020 16:28:51,512 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:51,512 INFO : Inserting PSA

11 May 2020 16:28:51,513 INFO : 69% Done

11 May 2020 16:28:51,543 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:51,543 INFO : Inserting SMAD4

11 May 2020 16:28:51,544 INFO : 74% Done

11 May 2020 16:28:51,587 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:51,587 INFO : Inserting SPINK1

11 May 2020 16:28:51,588 INFO : 80% Done

11 May 2020 16:28:51,622 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:51,622 INFO : Inserting SPRC

11 May 2020 16:28:51,623 INFO : 85% Done

11 May 2020 16:28:51,658 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:51,659 INFO : Inserting TFF3

11 May 2020 16:28:51,660 INFO : 89% Done

11 May 2020 16:28:51,688 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:51,688 INFO : Inserting TGFB1

11 May 2020 16:28:51,689 INFO : 90% Done

11 May 2020 16:28:51,697 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:51,697 INFO : Inserting VEGFA

11 May 2020 16:28:51,698 INFO : 98% Done

11 May 2020 16:28:51,757 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:51,757 INFO : Done parsing Skyline document.

11 May 2020 16:28:51,758 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:28:51,771 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:28:51,803 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:28:51,816 INFO : Cleaning up temp tables

11 May 2020 16:28:52,140 INFO : Completed import of Skyline document from CPDR-FFPE-ID-695_2020-01-29_12-25-00.sky.zip

11 May 2020 16:28:52,142 INFO : 100% Done

11 May 2020 16:28:52,149 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80394/CPDR-FFPE-ID-695_2020-01-29_12-25-00.sky.zip into the system

11 May 2020 16:28:52,150 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80397/CPDR-FFPE-ID-718_2020-01-29_12-26-03/CPDR-FFPE-ID-718.skyd into the system

11 May 2020 16:28:52,151 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80397/CPDR-FFPE-ID-718_2020-01-29_12-26-03/CPDR-FFPE-ID-718.skyd into the system

11 May 2020 16:28:52,151 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80397/CPDR-FFPE-ID-718_2020-01-29_12-26-03.sky.zip into the system

11 May 2020 16:28:52,154 INFO : Starting import from CPDR-FFPE-ID-718_2020-01-29_12-26-03.sky.zip

11 May 2020 16:28:52,158 INFO : Starting to import Skyline document from CPDR-FFPE-ID-718_2020-01-29_12-26-03.sky.zip

11 May 2020 16:28:52,167 INFO : Expanding CPDR-FFPE-ID-718.skyd

11 May 2020 16:28:52,527 INFO : Expanding CPDR-FFPE-ID-718.sky.view

11 May 2020 16:28:52,528 INFO : Expanding CPDR-FFPE-ID-718.sky

11 May 2020 16:28:52,534 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:28:52,536 INFO : 5% Done

11 May 2020 16:28:52,743 INFO : Inserting ANXA2

11 May 2020 16:28:52,749 INFO : 14% Done

11 May 2020 16:28:52,869 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:52,869 INFO : Inserting CAMKK2

11 May 2020 16:28:52,871 INFO : 23% Done

11 May 2020 16:28:52,988 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:52,988 INFO : Inserting CCND1

11 May 2020 16:28:52,990 INFO : 29% Done

11 May 2020 16:28:53,089 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:53,089 INFO : Inserting EGFR

11 May 2020 16:28:53,092 INFO : 34% Done

11 May 2020 16:28:53,180 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:53,180 INFO : Inserting ERG_pan

11 May 2020 16:28:53,183 INFO : 41% Done

11 May 2020 16:28:53,290 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:53,290 INFO : 42% Done

11 May 2020 16:28:53,290 INFO : Inserting FOLH1

11 May 2020 16:28:53,292 INFO : 45% Done

11 May 2020 16:28:53,342 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:53,342 INFO : Inserting MMP9

11 May 2020 16:28:53,345 INFO : 52% Done

11 May 2020 16:28:53,454 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:53,454 INFO : Inserting MUC1

11 May 2020 16:28:53,456 INFO : 56% Done

11 May 2020 16:28:53,518 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:53,519 INFO : Inserting NCOA2

11 May 2020 16:28:53,521 INFO : 64% Done

11 May 2020 16:28:53,581 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:53,582 INFO : Inserting PSA

11 May 2020 16:28:53,583 INFO : 68% Done

11 May 2020 16:28:53,622 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:53,622 INFO : Inserting SMAD4

11 May 2020 16:28:53,625 INFO : 74% Done

11 May 2020 16:28:53,678 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:53,678 INFO : Inserting SPINK1

11 May 2020 16:28:53,680 INFO : 79% Done

11 May 2020 16:28:53,728 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:53,728 INFO : Inserting SPRC

11 May 2020 16:28:53,730 INFO : 84% Done

11 May 2020 16:28:53,822 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:53,822 INFO : Inserting TFF3

11 May 2020 16:28:53,824 INFO : 88% Done

11 May 2020 16:28:53,860 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:53,860 INFO : Inserting TGFB1

11 May 2020 16:28:53,861 INFO : 89% Done

11 May 2020 16:28:53,873 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:53,873 INFO : Inserting VEGFA

11 May 2020 16:28:53,876 INFO : 98% Done

11 May 2020 16:28:53,954 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:53,954 INFO : Done parsing Skyline document.

11 May 2020 16:28:53,956 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:28:53,969 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:28:54,002 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:28:54,015 INFO : Cleaning up temp tables

11 May 2020 16:28:54,388 INFO : Completed import of Skyline document from CPDR-FFPE-ID-718_2020-01-29_12-26-03.sky.zip

11 May 2020 16:28:54,390 INFO : 100% Done

11 May 2020 16:28:54,397 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80397/CPDR-FFPE-ID-718_2020-01-29_12-26-03.sky.zip into the system

11 May 2020 16:28:54,397 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80401/CPDR-FFPE-ID-1293_2020-01-29_12-27-17/CPDR-FFPE-ID-1293.skyd into the system

11 May 2020 16:28:54,398 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80401/CPDR-FFPE-ID-1293_2020-01-29_12-27-17/CPDR-FFPE-ID-1293.skyd into the system

11 May 2020 16:28:54,399 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80401/CPDR-FFPE-ID-1293_2020-01-29_12-27-17.sky.zip into the system

11 May 2020 16:28:54,401 INFO : Starting import from CPDR-FFPE-ID-1293_2020-01-29_12-27-17.sky.zip

11 May 2020 16:28:54,405 INFO : Starting to import Skyline document from CPDR-FFPE-ID-1293_2020-01-29_12-27-17.sky.zip

11 May 2020 16:28:54,412 INFO : Expanding CPDR-FFPE-ID-1293.skyd

11 May 2020 16:28:54,656 INFO : Expanding CPDR-FFPE-ID-1293.sky.view

11 May 2020 16:28:54,657 INFO : Expanding CPDR-FFPE-ID-1293.sky

11 May 2020 16:28:54,664 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:28:54,666 INFO : 5% Done

11 May 2020 16:28:54,783 INFO : Inserting ANXA2

11 May 2020 16:28:54,789 INFO : 15% Done

11 May 2020 16:28:54,865 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:54,865 INFO : Inserting CAMKK2

11 May 2020 16:28:54,868 INFO : 22% Done

11 May 2020 16:28:54,925 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:54,926 INFO : Inserting CCND1

11 May 2020 16:28:54,928 INFO : 27% Done

11 May 2020 16:28:54,983 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:54,983 INFO : 28% Done

11 May 2020 16:28:54,983 INFO : Inserting EGFR

11 May 2020 16:28:54,986 INFO : 33% Done

11 May 2020 16:28:55,034 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:55,034 INFO : Inserting ERG_pan

11 May 2020 16:28:55,036 INFO : 41% Done

11 May 2020 16:28:55,092 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:55,092 INFO : Inserting FOLH1

11 May 2020 16:28:55,093 INFO : 44% Done

11 May 2020 16:28:55,122 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:55,122 INFO : Inserting MMP9

11 May 2020 16:28:55,124 INFO : 52% Done

11 May 2020 16:28:55,182 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:55,182 INFO : Inserting MUC1

11 May 2020 16:28:55,184 INFO : 56% Done

11 May 2020 16:28:55,220 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:55,220 INFO : Inserting NCOA2

11 May 2020 16:28:55,222 INFO : 64% Done

11 May 2020 16:28:55,277 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:55,277 INFO : Inserting PSA

11 May 2020 16:28:55,279 INFO : 68% Done

11 May 2020 16:28:55,311 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:55,311 INFO : Inserting SMAD4

11 May 2020 16:28:55,313 INFO : 74% Done

11 May 2020 16:28:55,362 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:55,362 INFO : Inserting SPINK1

11 May 2020 16:28:55,364 INFO : 79% Done

11 May 2020 16:28:55,403 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:55,404 INFO : Inserting SPRC

11 May 2020 16:28:55,406 INFO : 84% Done

11 May 2020 16:28:55,449 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:55,449 INFO : Inserting TFF3

11 May 2020 16:28:55,450 INFO : 88% Done

11 May 2020 16:28:55,483 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:55,484 INFO : Inserting TGFB1

11 May 2020 16:28:55,485 INFO : 89% Done

11 May 2020 16:28:55,500 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:55,500 INFO : Inserting VEGFA

11 May 2020 16:28:55,503 INFO : 98% Done

11 May 2020 16:28:55,575 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:55,575 INFO : Done parsing Skyline document.

11 May 2020 16:28:55,576 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:28:55,590 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:28:55,621 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:28:55,632 INFO : Cleaning up temp tables

11 May 2020 16:28:55,971 INFO : Completed import of Skyline document from CPDR-FFPE-ID-1293_2020-01-29_12-27-17.sky.zip

11 May 2020 16:28:55,972 INFO : 100% Done

11 May 2020 16:28:55,980 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80401/CPDR-FFPE-ID-1293_2020-01-29_12-27-17.sky.zip into the system

11 May 2020 16:28:55,981 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80403/CPDR-FFPE-ID-821_2020-01-29_12-30-53/CPDR-FFPE-ID-821.skyd into the system

11 May 2020 16:28:55,982 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80403/CPDR-FFPE-ID-821_2020-01-29_12-30-53/CPDR-FFPE-ID-821.skyd into the system

11 May 2020 16:28:55,982 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80403/CPDR-FFPE-ID-821_2020-01-29_12-30-53.sky.zip into the system

11 May 2020 16:28:55,984 INFO : Starting import from CPDR-FFPE-ID-821_2020-01-29_12-30-53.sky.zip

11 May 2020 16:28:55,989 INFO : Starting to import Skyline document from CPDR-FFPE-ID-821_2020-01-29_12-30-53.sky.zip

11 May 2020 16:28:56,000 INFO : Expanding CPDR-FFPE-ID-821.skyd

11 May 2020 16:28:56,345 INFO : Expanding CPDR-FFPE-ID-821.sky.view

11 May 2020 16:28:56,346 INFO : Expanding CPDR-FFPE-ID-821.sky

11 May 2020 16:28:56,355 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:28:56,358 INFO : 6% Done

11 May 2020 16:28:56,520 INFO : Inserting ANXA2

11 May 2020 16:28:56,526 INFO : 14% Done

11 May 2020 16:28:56,619 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:56,619 INFO : Inserting CAMKK2

11 May 2020 16:28:56,622 INFO : 21% Done

11 May 2020 16:28:56,696 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:56,697 INFO : Inserting CCND1

11 May 2020 16:28:56,700 INFO : 27% Done

11 May 2020 16:28:56,780 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:56,780 INFO : Inserting EGFR

11 May 2020 16:28:56,783 INFO : 32% Done

11 May 2020 16:28:56,850 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:56,850 INFO : Inserting ERG_pan

11 May 2020 16:28:56,853 INFO : 40% Done

11 May 2020 16:28:56,939 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:56,940 INFO : Inserting FOLH1

11 May 2020 16:28:56,942 INFO : 43% Done

11 May 2020 16:28:56,984 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:56,984 INFO : Inserting MMP9

11 May 2020 16:28:56,987 INFO : 50% Done

11 May 2020 16:28:57,063 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:57,063 INFO : Inserting MUC1

11 May 2020 16:28:57,065 INFO : 55% Done

11 May 2020 16:28:57,114 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:57,114 INFO : Inserting NCOA2

11 May 2020 16:28:57,117 INFO : 62% Done

11 May 2020 16:28:57,191 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:57,192 INFO : Inserting PSA

11 May 2020 16:28:57,194 INFO : 68% Done

11 May 2020 16:28:57,259 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:57,259 INFO : Inserting SMAD4

11 May 2020 16:28:57,262 INFO : 74% Done

11 May 2020 16:28:57,325 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:57,325 INFO : Inserting SPINK1

11 May 2020 16:28:57,328 INFO : 78% Done

11 May 2020 16:28:57,392 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:57,392 INFO : Inserting SPRC

11 May 2020 16:28:57,395 INFO : 83% Done

11 May 2020 16:28:58,208 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:58,829 INFO : Inserting TFF3

11 May 2020 16:28:58,833 INFO : 87% Done

11 May 2020 16:28:58,890 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:58,890 INFO : Inserting TGFB1

11 May 2020 16:28:58,892 INFO : 91% Done

11 May 2020 16:28:58,928 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:58,928 INFO : Inserting VEGFA

11 May 2020 16:28:58,931 INFO : 98% Done

11 May 2020 16:28:59,036 DEBUG: Total peptides inserted: 1

11 May 2020 16:28:59,036 INFO : Done parsing Skyline document.

11 May 2020 16:28:59,038 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:28:59,072 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:28:59,180 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:28:59,221 INFO : Cleaning up temp tables

11 May 2020 16:28:59,694 INFO : Completed import of Skyline document from CPDR-FFPE-ID-821_2020-01-29_12-30-53.sky.zip

11 May 2020 16:28:59,696 INFO : 100% Done

11 May 2020 16:28:59,708 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80403/CPDR-FFPE-ID-821_2020-01-29_12-30-53.sky.zip into the system

11 May 2020 16:28:59,708 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80428/CPDR-FFPE-ID-799_2020-01-29_12-37-51/CPDR-FFPE-ID-799.skyd into the system

11 May 2020 16:28:59,709 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80428/CPDR-FFPE-ID-799_2020-01-29_12-37-51/CPDR-FFPE-ID-799.skyd into the system

11 May 2020 16:28:59,710 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80428/CPDR-FFPE-ID-799_2020-01-29_12-37-51.sky.zip into the system

11 May 2020 16:28:59,713 INFO : Starting import from CPDR-FFPE-ID-799_2020-01-29_12-37-51.sky.zip

11 May 2020 16:28:59,720 INFO : Starting to import Skyline document from CPDR-FFPE-ID-799_2020-01-29_12-37-51.sky.zip

11 May 2020 16:28:59,728 INFO : Expanding CPDR-FFPE-ID-799.skyd

11 May 2020 16:28:59,929 INFO : Expanding CPDR-FFPE-ID-799.sky.view

11 May 2020 16:28:59,930 INFO : Expanding CPDR-FFPE-ID-799.sky

11 May 2020 16:28:59,939 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:28:59,942 INFO : 5% Done

11 May 2020 16:29:00,099 INFO : Inserting ANXA2

11 May 2020 16:29:00,105 INFO : 13% Done

11 May 2020 16:29:00,167 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:00,167 INFO : Inserting CAMKK2

11 May 2020 16:29:00,170 INFO : 22% Done

11 May 2020 16:29:00,235 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:00,235 INFO : Inserting CCND1

11 May 2020 16:29:00,237 INFO : 28% Done

11 May 2020 16:29:00,288 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:00,288 INFO : Inserting EGFR

11 May 2020 16:29:00,290 INFO : 33% Done

11 May 2020 16:29:00,332 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:00,332 INFO : Inserting ERG_pan

11 May 2020 16:29:00,334 INFO : 41% Done

11 May 2020 16:29:00,395 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:00,395 INFO : Inserting FOLH1

11 May 2020 16:29:00,397 INFO : 46% Done

11 May 2020 16:29:00,428 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:00,428 INFO : Inserting MMP9

11 May 2020 16:29:00,448 INFO : 53% Done

11 May 2020 16:29:00,507 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:00,507 INFO : Inserting MUC1

11 May 2020 16:29:00,509 INFO : 58% Done

11 May 2020 16:29:00,546 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:00,546 INFO : Inserting NCOA2

11 May 2020 16:29:00,548 INFO : 64% Done

11 May 2020 16:29:00,593 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:00,594 INFO : Inserting PSA

11 May 2020 16:29:00,595 INFO : 69% Done

11 May 2020 16:29:00,631 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:00,631 INFO : Inserting SMAD4

11 May 2020 16:29:00,634 INFO : 74% Done

11 May 2020 16:29:00,678 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:00,678 INFO : Inserting SPINK1

11 May 2020 16:29:00,680 INFO : 80% Done

11 May 2020 16:29:00,722 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:00,722 INFO : Inserting SPRC

11 May 2020 16:29:00,724 INFO : 84% Done

11 May 2020 16:29:00,763 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:00,763 INFO : Inserting TFF3

11 May 2020 16:29:00,765 INFO : 89% Done

11 May 2020 16:29:00,797 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:00,797 INFO : Inserting TGFB1

11 May 2020 16:29:00,799 INFO : 92% Done

11 May 2020 16:29:00,817 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:00,817 INFO : Inserting VEGFA

11 May 2020 16:29:00,820 INFO : 98% Done

11 May 2020 16:29:00,876 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:00,876 INFO : Done parsing Skyline document.

11 May 2020 16:29:00,878 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:29:00,891 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:29:00,917 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:29:00,927 INFO : Cleaning up temp tables

11 May 2020 16:29:01,280 INFO : Completed import of Skyline document from CPDR-FFPE-ID-799_2020-01-29_12-37-51.sky.zip

11 May 2020 16:29:01,281 INFO : 100% Done

11 May 2020 16:29:01,290 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80428/CPDR-FFPE-ID-799_2020-01-29_12-37-51.sky.zip into the system

11 May 2020 16:29:01,290 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80451/CPDR-FFPE-ID-1397_2020-01-29_12-46-03/CPDR-FFPE-ID-1397.skyd into the system

11 May 2020 16:29:01,292 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80451/CPDR-FFPE-ID-1397_2020-01-29_12-46-03/CPDR-FFPE-ID-1397.skyd into the system

11 May 2020 16:29:01,292 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80451/CPDR-FFPE-ID-1397_2020-01-29_12-46-03.sky.zip into the system

11 May 2020 16:29:01,295 INFO : Starting import from CPDR-FFPE-ID-1397_2020-01-29_12-46-03.sky.zip

11 May 2020 16:29:01,300 INFO : Starting to import Skyline document from CPDR-FFPE-ID-1397_2020-01-29_12-46-03.sky.zip

11 May 2020 16:29:01,309 INFO : Expanding CPDR-FFPE-ID-1397.skyd

11 May 2020 16:29:01,575 INFO : Expanding CPDR-FFPE-ID-1397.sky.view

11 May 2020 16:29:01,576 INFO : Expanding CPDR-FFPE-ID-1397.sky

11 May 2020 16:29:01,584 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:29:01,587 INFO : 5% Done

11 May 2020 16:29:01,758 INFO : Inserting ANXA2

11 May 2020 16:29:01,763 INFO : 14% Done

11 May 2020 16:29:01,840 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:01,840 INFO : Inserting CAMKK2

11 May 2020 16:29:01,843 INFO : 21% Done

11 May 2020 16:29:01,912 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:01,912 INFO : Inserting CCND1

11 May 2020 16:29:01,915 INFO : 26% Done

11 May 2020 16:29:01,969 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:01,969 INFO : Inserting EGFR

11 May 2020 16:29:01,971 INFO : 31% Done

11 May 2020 16:29:02,017 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:02,017 INFO : Inserting ERG_pan

11 May 2020 16:29:02,020 INFO : 40% Done

11 May 2020 16:29:02,086 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:02,086 INFO : Inserting FOLH1

11 May 2020 16:29:02,089 INFO : 44% Done

11 May 2020 16:29:02,125 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:02,125 INFO : Inserting MMP9

11 May 2020 16:29:02,128 INFO : 52% Done

11 May 2020 16:29:02,197 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:02,197 INFO : Inserting MUC1

11 May 2020 16:29:02,199 INFO : 58% Done

11 May 2020 16:29:02,247 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:02,247 INFO : Inserting NCOA2

11 May 2020 16:29:02,249 INFO : 64% Done

11 May 2020 16:29:02,302 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:02,302 INFO : Inserting PSA

11 May 2020 16:29:02,304 INFO : 68% Done

11 May 2020 16:29:02,342 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:02,342 INFO : Inserting SMAD4

11 May 2020 16:29:02,345 INFO : 74% Done

11 May 2020 16:29:02,393 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:02,393 INFO : Inserting SPINK1

11 May 2020 16:29:02,396 INFO : 79% Done

11 May 2020 16:29:02,442 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:02,442 INFO : Inserting SPRC

11 May 2020 16:29:02,444 INFO : 84% Done

11 May 2020 16:29:02,491 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:02,492 INFO : Inserting TFF3

11 May 2020 16:29:02,494 INFO : 89% Done

11 May 2020 16:29:02,531 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:02,531 INFO : Inserting TGFB1

11 May 2020 16:29:02,532 INFO : 90% Done

11 May 2020 16:29:02,546 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:02,546 INFO : Inserting VEGFA

11 May 2020 16:29:02,547 INFO : 98% Done

11 May 2020 16:29:02,605 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:02,605 INFO : Done parsing Skyline document.

11 May 2020 16:29:02,606 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:29:02,619 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:29:02,651 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:29:02,663 INFO : Cleaning up temp tables

11 May 2020 16:29:02,911 INFO : Completed import of Skyline document from CPDR-FFPE-ID-1397_2020-01-29_12-46-03.sky.zip

11 May 2020 16:29:02,912 INFO : 100% Done

11 May 2020 16:29:02,918 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80451/CPDR-FFPE-ID-1397_2020-01-29_12-46-03.sky.zip into the system

11 May 2020 16:29:02,918 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80452/CPDR-FFPE-ID-1451_2020-01-29_12-46-17/CPDR-FFPE-ID-1451.skyd into the system

11 May 2020 16:29:02,919 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80452/CPDR-FFPE-ID-1451_2020-01-29_12-46-17/CPDR-FFPE-ID-1451.skyd into the system

11 May 2020 16:29:02,919 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80452/CPDR-FFPE-ID-1451_2020-01-29_12-46-17.sky.zip into the system

11 May 2020 16:29:02,921 INFO : Starting import from CPDR-FFPE-ID-1451_2020-01-29_12-46-17.sky.zip

11 May 2020 16:29:02,924 INFO : Starting to import Skyline document from CPDR-FFPE-ID-1451_2020-01-29_12-46-17.sky.zip

11 May 2020 16:29:02,930 INFO : Expanding CPDR-FFPE-ID-1451.skyd

11 May 2020 16:29:03,112 INFO : Expanding CPDR-FFPE-ID-1451.sky.view

11 May 2020 16:29:03,113 INFO : Expanding CPDR-FFPE-ID-1451.sky

11 May 2020 16:29:03,121 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:29:03,124 INFO : 5% Done

11 May 2020 16:29:03,287 INFO : Inserting ANXA2

11 May 2020 16:29:03,292 INFO : 14% Done

11 May 2020 16:29:03,355 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:03,356 INFO : Inserting CAMKK2

11 May 2020 16:29:03,358 INFO : 21% Done

11 May 2020 16:29:03,426 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:03,426 INFO : Inserting CCND1

11 May 2020 16:29:03,428 INFO : 26% Done

11 May 2020 16:29:03,485 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:03,485 INFO : Inserting EGFR

11 May 2020 16:29:03,488 INFO : 33% Done

11 May 2020 16:29:03,541 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:03,541 INFO : 34% Done

11 May 2020 16:29:03,541 INFO : Inserting ERG_pan

11 May 2020 16:29:03,544 INFO : 40% Done

11 May 2020 16:29:03,604 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:03,604 INFO : Inserting FOLH1

11 May 2020 16:29:03,606 INFO : 44% Done

11 May 2020 16:29:03,649 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:03,649 INFO : Inserting MMP9

11 May 2020 16:29:03,652 INFO : 54% Done

11 May 2020 16:29:03,728 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:03,728 INFO : Inserting MUC1

11 May 2020 16:29:03,731 INFO : 59% Done

11 May 2020 16:29:03,782 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:03,782 INFO : Inserting NCOA2

11 May 2020 16:29:03,784 INFO : 66% Done

11 May 2020 16:29:03,834 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:03,834 INFO : Inserting PSA

11 May 2020 16:29:03,836 INFO : 70% Done

11 May 2020 16:29:03,871 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:03,871 INFO : Inserting SMAD4

11 May 2020 16:29:03,873 INFO : 74% Done

11 May 2020 16:29:03,924 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:03,924 INFO : Inserting SPINK1

11 May 2020 16:29:03,926 INFO : 79% Done

11 May 2020 16:29:03,969 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:03,970 INFO : Inserting SPRC

11 May 2020 16:29:03,972 INFO : 85% Done

11 May 2020 16:29:04,016 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:04,016 INFO : Inserting TFF3

11 May 2020 16:29:04,018 INFO : 89% Done

11 May 2020 16:29:04,057 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:04,058 INFO : Inserting TGFB1

11 May 2020 16:29:04,059 INFO : 91% Done

11 May 2020 16:29:04,077 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:04,077 INFO : Inserting VEGFA

11 May 2020 16:29:04,080 INFO : 98% Done

11 May 2020 16:29:04,141 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:04,141 INFO : Done parsing Skyline document.

11 May 2020 16:29:04,143 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:29:04,156 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:29:04,190 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:29:04,202 INFO : Cleaning up temp tables

11 May 2020 16:29:04,620 INFO : Completed import of Skyline document from CPDR-FFPE-ID-1451_2020-01-29_12-46-17.sky.zip

11 May 2020 16:29:04,621 INFO : 100% Done

11 May 2020 16:29:04,629 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80452/CPDR-FFPE-ID-1451_2020-01-29_12-46-17.sky.zip into the system

11 May 2020 16:29:04,629 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80453/CPDR-FFPE-ID-824_2020-01-29_12-46-27/CPDR-FFPE-ID-824.skyd into the system

11 May 2020 16:29:04,630 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80453/CPDR-FFPE-ID-824_2020-01-29_12-46-27/CPDR-FFPE-ID-824.skyd into the system

11 May 2020 16:29:04,631 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80453/CPDR-FFPE-ID-824_2020-01-29_12-46-27.sky.zip into the system

11 May 2020 16:29:04,633 INFO : Starting import from CPDR-FFPE-ID-824_2020-01-29_12-46-27.sky.zip

11 May 2020 16:29:04,638 INFO : Starting to import Skyline document from CPDR-FFPE-ID-824_2020-01-29_12-46-27.sky.zip

11 May 2020 16:29:04,648 INFO : Expanding CPDR-FFPE-ID-824.skyd

11 May 2020 16:29:04,886 INFO : Expanding CPDR-FFPE-ID-824.sky.view

11 May 2020 16:29:04,886 INFO : Expanding CPDR-FFPE-ID-824.sky

11 May 2020 16:29:04,894 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:29:04,896 INFO : 6% Done

11 May 2020 16:29:05,010 INFO : Inserting ANXA2

11 May 2020 16:29:05,015 INFO : 11% Done

11 May 2020 16:29:05,059 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:05,059 INFO : Inserting CAMKK2

11 May 2020 16:29:05,062 INFO : 19% Done

11 May 2020 16:29:05,120 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:05,120 INFO : Inserting CCND1

11 May 2020 16:29:05,123 INFO : 25% Done

11 May 2020 16:29:05,171 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:05,171 INFO : Inserting EGFR

11 May 2020 16:29:05,173 INFO : 31% Done

11 May 2020 16:29:05,227 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:05,227 INFO : Inserting ERG_pan

11 May 2020 16:29:05,230 INFO : 40% Done

11 May 2020 16:29:05,296 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:05,296 INFO : Inserting FOLH1

11 May 2020 16:29:05,298 INFO : 44% Done

11 May 2020 16:29:05,334 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:05,334 INFO : Inserting MMP9

11 May 2020 16:29:05,337 INFO : 52% Done

11 May 2020 16:29:05,399 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:05,399 INFO : Inserting MUC1

11 May 2020 16:29:05,402 INFO : 58% Done

11 May 2020 16:29:05,452 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:05,452 INFO : Inserting NCOA2

11 May 2020 16:29:05,455 INFO : 65% Done

11 May 2020 16:29:05,506 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:05,506 INFO : Inserting PSA

11 May 2020 16:29:05,508 INFO : 69% Done

11 May 2020 16:29:05,542 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:05,542 INFO : Inserting SMAD4

11 May 2020 16:29:05,544 INFO : 74% Done

11 May 2020 16:29:05,589 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:05,589 INFO : Inserting SPINK1

11 May 2020 16:29:05,592 INFO : 80% Done

11 May 2020 16:29:05,633 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:05,634 INFO : Inserting SPRC

11 May 2020 16:29:05,636 INFO : 84% Done

11 May 2020 16:29:05,681 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:05,681 INFO : Inserting TFF3

11 May 2020 16:29:05,683 INFO : 89% Done

11 May 2020 16:29:05,720 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:05,720 INFO : Inserting TGFB1

11 May 2020 16:29:05,722 INFO : 91% Done

11 May 2020 16:29:05,741 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:05,741 INFO : Inserting VEGFA

11 May 2020 16:29:05,744 INFO : 98% Done

11 May 2020 16:29:05,805 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:05,806 INFO : Done parsing Skyline document.

11 May 2020 16:29:05,807 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:29:05,821 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:29:05,850 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:29:05,861 INFO : Cleaning up temp tables

11 May 2020 16:29:06,203 INFO : Completed import of Skyline document from CPDR-FFPE-ID-824_2020-01-29_12-46-27.sky.zip

11 May 2020 16:29:06,204 INFO : 100% Done

11 May 2020 16:29:06,212 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80453/CPDR-FFPE-ID-824_2020-01-29_12-46-27.sky.zip into the system

11 May 2020 16:29:06,212 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80358/CPDR-FFPE-ID-830_2020-01-29_12-16-25/CPDR-FFPE-ID-830.skyd into the system

11 May 2020 16:29:06,213 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80358/CPDR-FFPE-ID-830_2020-01-29_12-16-25/CPDR-FFPE-ID-830.skyd into the system

11 May 2020 16:29:06,213 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80358/CPDR-FFPE-ID-830_2020-01-29_12-16-25.sky.zip into the system

11 May 2020 16:29:06,217 INFO : Starting import from CPDR-FFPE-ID-830_2020-01-29_12-16-25.sky.zip

11 May 2020 16:29:06,222 INFO : Starting to import Skyline document from CPDR-FFPE-ID-830_2020-01-29_12-16-25.sky.zip

11 May 2020 16:29:06,241 INFO : Expanding CPDR-FFPE-ID-830.skyd

11 May 2020 16:29:06,572 INFO : Expanding CPDR-FFPE-ID-830.sky.view

11 May 2020 16:29:06,573 INFO : Expanding CPDR-FFPE-ID-830.sky

11 May 2020 16:29:06,581 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:29:06,584 INFO : 6% Done

11 May 2020 16:29:06,725 INFO : Inserting ANXA2

11 May 2020 16:29:06,731 INFO : 14% Done

11 May 2020 16:29:06,801 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:06,802 INFO : Inserting CAMKK2

11 May 2020 16:29:06,804 INFO : 22% Done

11 May 2020 16:29:06,899 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:06,899 INFO : Inserting CCND1

11 May 2020 16:29:06,902 INFO : 27% Done

11 May 2020 16:29:06,962 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:06,962 INFO : Inserting EGFR

11 May 2020 16:29:06,965 INFO : 34% Done

11 May 2020 16:29:07,029 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:07,029 INFO : Inserting ERG_pan

11 May 2020 16:29:07,032 INFO : 41% Done

11 May 2020 16:29:07,094 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:07,094 INFO : Inserting FOLH1

11 May 2020 16:29:07,096 INFO : 45% Done

11 May 2020 16:29:07,139 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:07,139 INFO : Inserting MMP9

11 May 2020 16:29:07,142 INFO : 54% Done

11 May 2020 16:29:07,231 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:07,231 INFO : Inserting MUC1

11 May 2020 16:29:07,234 INFO : 60% Done

11 May 2020 16:29:07,295 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:07,295 INFO : Inserting NCOA2

11 May 2020 16:29:07,297 INFO : 66% Done

11 May 2020 16:29:07,354 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:07,355 INFO : Inserting PSA

11 May 2020 16:29:07,356 INFO : 70% Done

11 May 2020 16:29:07,390 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:07,390 INFO : Inserting SMAD4

11 May 2020 16:29:07,392 INFO : 75% Done

11 May 2020 16:29:07,449 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:07,449 INFO : Inserting SPINK1

11 May 2020 16:29:07,451 INFO : 80% Done

11 May 2020 16:29:07,502 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:07,502 INFO : Inserting SPRC

11 May 2020 16:29:07,504 INFO : 85% Done

11 May 2020 16:29:07,549 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:07,549 INFO : Inserting TFF3

11 May 2020 16:29:07,551 INFO : 89% Done

11 May 2020 16:29:07,593 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:07,593 INFO : Inserting TGFB1

11 May 2020 16:29:07,594 INFO : 91% Done

11 May 2020 16:29:07,611 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:07,611 INFO : Inserting VEGFA

11 May 2020 16:29:07,614 INFO : 98% Done

11 May 2020 16:29:07,696 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:07,696 INFO : Done parsing Skyline document.

11 May 2020 16:29:07,697 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:29:07,712 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:29:07,749 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:29:07,763 INFO : Cleaning up temp tables

11 May 2020 16:29:08,112 INFO : Completed import of Skyline document from CPDR-FFPE-ID-830_2020-01-29_12-16-25.sky.zip

11 May 2020 16:29:08,114 INFO : 100% Done

11 May 2020 16:29:08,126 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80358/CPDR-FFPE-ID-830_2020-01-29_12-16-25.sky.zip into the system

11 May 2020 16:29:08,126 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80359/CPDR-FFPE-ID-689_2020-01-29_12-16-38/CPDR-FFPE-ID-689.skyd into the system

11 May 2020 16:29:08,128 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80359/CPDR-FFPE-ID-689_2020-01-29_12-16-38/CPDR-FFPE-ID-689.skyd into the system

11 May 2020 16:29:08,128 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80359/CPDR-FFPE-ID-689_2020-01-29_12-16-38.sky.zip into the system

11 May 2020 16:29:08,132 INFO : Starting import from CPDR-FFPE-ID-689_2020-01-29_12-16-38.sky.zip

11 May 2020 16:29:08,139 INFO : Starting to import Skyline document from CPDR-FFPE-ID-689_2020-01-29_12-16-38.sky.zip

11 May 2020 16:29:08,146 INFO : Expanding CPDR-FFPE-ID-689.skyd

11 May 2020 16:29:08,336 INFO : Expanding CPDR-FFPE-ID-689.sky.view

11 May 2020 16:29:08,337 INFO : Expanding CPDR-FFPE-ID-689.sky

11 May 2020 16:29:08,347 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:29:08,350 INFO : 5% Done

11 May 2020 16:29:08,528 INFO : Inserting ANXA2

11 May 2020 16:29:08,534 INFO : 14% Done

11 May 2020 16:29:08,585 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:08,586 INFO : Inserting CAMKK2

11 May 2020 16:29:08,588 INFO : 22% Done

11 May 2020 16:29:08,643 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:08,643 INFO : Inserting CCND1

11 May 2020 16:29:08,645 INFO : 27% Done

11 May 2020 16:29:08,684 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:08,684 INFO : Inserting EGFR

11 May 2020 16:29:08,686 INFO : 32% Done

11 May 2020 16:29:08,727 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:08,727 INFO : Inserting ERG_pan

11 May 2020 16:29:08,729 INFO : 41% Done

11 May 2020 16:29:08,792 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:08,792 INFO : Inserting FOLH1

11 May 2020 16:29:08,794 INFO : 45% Done

11 May 2020 16:29:08,826 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:08,826 INFO : 47% Done

11 May 2020 16:29:08,826 INFO : Inserting MMP9

11 May 2020 16:29:08,828 INFO : 54% Done

11 May 2020 16:29:08,882 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:08,882 INFO : Inserting MUC1

11 May 2020 16:29:08,884 INFO : 59% Done

11 May 2020 16:29:08,924 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:08,924 INFO : Inserting NCOA2

11 May 2020 16:29:08,926 INFO : 66% Done

11 May 2020 16:29:08,968 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:08,968 INFO : Inserting PSA

11 May 2020 16:29:08,970 INFO : 70% Done

11 May 2020 16:29:09,005 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:09,005 INFO : 71% Done

11 May 2020 16:29:09,005 INFO : Inserting SMAD4

11 May 2020 16:29:09,007 INFO : 75% Done

11 May 2020 16:29:09,052 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:09,052 INFO : Inserting SPINK1

11 May 2020 16:29:09,054 INFO : 80% Done

11 May 2020 16:29:09,095 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:09,095 INFO : Inserting SPRC

11 May 2020 16:29:09,097 INFO : 84% Done

11 May 2020 16:29:09,132 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:09,132 INFO : Inserting TFF3

11 May 2020 16:29:09,134 INFO : 89% Done

11 May 2020 16:29:09,171 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:09,171 INFO : Inserting TGFB1

11 May 2020 16:29:09,173 INFO : 92% Done

11 May 2020 16:29:09,187 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:09,187 INFO : Inserting VEGFA

11 May 2020 16:29:09,189 INFO : 98% Done

11 May 2020 16:29:09,236 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:09,236 INFO : Done parsing Skyline document.

11 May 2020 16:29:09,238 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:29:09,251 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:29:09,276 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:29:09,285 INFO : Cleaning up temp tables

11 May 2020 16:29:09,632 INFO : Completed import of Skyline document from CPDR-FFPE-ID-689_2020-01-29_12-16-38.sky.zip

11 May 2020 16:29:09,633 INFO : 100% Done

11 May 2020 16:29:09,641 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80359/CPDR-FFPE-ID-689_2020-01-29_12-16-38.sky.zip into the system

11 May 2020 16:29:09,641 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80368/CPDR-FFPE-ID-644_2020-01-29_12-18-45/CPDR-FFPE-ID-644.skyd into the system

11 May 2020 16:29:09,643 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80368/CPDR-FFPE-ID-644_2020-01-29_12-18-45/CPDR-FFPE-ID-644.skyd into the system

11 May 2020 16:29:09,643 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80368/CPDR-FFPE-ID-644_2020-01-29_12-18-45.sky.zip into the system

11 May 2020 16:29:09,646 INFO : Starting import from CPDR-FFPE-ID-644_2020-01-29_12-18-45.sky.zip

11 May 2020 16:29:09,650 INFO : Starting to import Skyline document from CPDR-FFPE-ID-644_2020-01-29_12-18-45.sky.zip

11 May 2020 16:29:09,657 INFO : Expanding CPDR-FFPE-ID-644.skyd

11 May 2020 16:29:09,866 INFO : Expanding CPDR-FFPE-ID-644.sky.view

11 May 2020 16:29:09,866 INFO : Expanding CPDR-FFPE-ID-644.sky

11 May 2020 16:29:09,873 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:29:09,875 INFO : 5% Done

11 May 2020 16:29:09,974 INFO : Inserting ANXA2

11 May 2020 16:29:09,980 INFO : 14% Done

11 May 2020 16:29:10,031 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:10,031 INFO : Inserting CAMKK2

11 May 2020 16:29:10,034 INFO : 20% Done

11 May 2020 16:29:10,084 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:10,085 INFO : 21% Done

11 May 2020 16:29:10,085 INFO : Inserting CCND1

11 May 2020 16:29:10,087 INFO : 25% Done

11 May 2020 16:29:10,127 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:10,127 INFO : Inserting EGFR

11 May 2020 16:29:10,130 INFO : 32% Done

11 May 2020 16:29:10,173 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:10,173 INFO : Inserting ERG_pan

11 May 2020 16:29:10,175 INFO : 40% Done

11 May 2020 16:29:10,236 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:10,236 INFO : Inserting FOLH1

11 May 2020 16:29:10,238 INFO : 44% Done

11 May 2020 16:29:10,268 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:10,268 INFO : Inserting MMP9

11 May 2020 16:29:10,271 INFO : 54% Done

11 May 2020 16:29:10,332 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:10,332 INFO : Inserting MUC1

11 May 2020 16:29:10,334 INFO : 59% Done

11 May 2020 16:29:10,375 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:10,375 INFO : Inserting NCOA2

11 May 2020 16:29:10,377 INFO : 65% Done

11 May 2020 16:29:10,423 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:10,424 INFO : Inserting PSA

11 May 2020 16:29:10,425 INFO : 70% Done

11 May 2020 16:29:10,460 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:10,460 INFO : Inserting SMAD4

11 May 2020 16:29:10,462 INFO : 74% Done

11 May 2020 16:29:10,521 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:10,521 INFO : 76% Done

11 May 2020 16:29:10,521 INFO : Inserting SPINK1

11 May 2020 16:29:10,523 INFO : 79% Done

11 May 2020 16:29:10,557 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:10,557 INFO : Inserting SPRC

11 May 2020 16:29:10,559 INFO : 83% Done

11 May 2020 16:29:10,592 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:10,592 INFO : 84% Done

11 May 2020 16:29:10,592 INFO : Inserting TFF3

11 May 2020 16:29:10,594 INFO : 89% Done

11 May 2020 16:29:10,631 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:10,631 INFO : Inserting TGFB1

11 May 2020 16:29:10,632 INFO : 91% Done

11 May 2020 16:29:10,646 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:10,646 INFO : Inserting VEGFA

11 May 2020 16:29:10,648 INFO : 98% Done

11 May 2020 16:29:10,701 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:10,701 INFO : Done parsing Skyline document.

11 May 2020 16:29:10,702 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:29:10,715 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:29:10,740 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:29:10,750 INFO : Cleaning up temp tables

11 May 2020 16:29:11,094 INFO : Completed import of Skyline document from CPDR-FFPE-ID-644_2020-01-29_12-18-45.sky.zip

11 May 2020 16:29:11,095 INFO : 100% Done

11 May 2020 16:29:11,103 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80368/CPDR-FFPE-ID-644_2020-01-29_12-18-45.sky.zip into the system

11 May 2020 16:29:11,103 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80369/CPDR-FFPE-ID-727_2020-01-29_12-18-58/CPDR-FFPE-ID-727.skyd into the system

11 May 2020 16:29:11,104 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80369/CPDR-FFPE-ID-727_2020-01-29_12-18-58/CPDR-FFPE-ID-727.skyd into the system

11 May 2020 16:29:11,104 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80369/CPDR-FFPE-ID-727_2020-01-29_12-18-58.sky.zip into the system

11 May 2020 16:29:11,107 INFO : Starting import from CPDR-FFPE-ID-727_2020-01-29_12-18-58.sky.zip

11 May 2020 16:29:11,112 INFO : Starting to import Skyline document from CPDR-FFPE-ID-727_2020-01-29_12-18-58.sky.zip

11 May 2020 16:29:11,117 INFO : Expanding CPDR-FFPE-ID-727.skyd

11 May 2020 16:29:11,255 INFO : Expanding CPDR-FFPE-ID-727.sky.view

11 May 2020 16:29:11,256 INFO : Expanding CPDR-FFPE-ID-727.sky

11 May 2020 16:29:11,262 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:29:11,264 INFO : 6% Done

11 May 2020 16:29:11,336 INFO : Inserting ANXA2

11 May 2020 16:29:11,341 INFO : 14% Done

11 May 2020 16:29:11,385 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:11,385 INFO : Inserting CAMKK2

11 May 2020 16:29:11,387 INFO : 21% Done

11 May 2020 16:29:11,425 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:11,425 INFO : Inserting CCND1

11 May 2020 16:29:11,427 INFO : 27% Done

11 May 2020 16:29:11,461 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:11,461 INFO : Inserting EGFR

11 May 2020 16:29:11,463 INFO : 32% Done

11 May 2020 16:29:11,498 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:11,498 INFO : Inserting ERG_pan

11 May 2020 16:29:11,500 INFO : 40% Done

11 May 2020 16:29:11,542 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:11,542 INFO : 41% Done

11 May 2020 16:29:11,542 INFO : Inserting FOLH1

11 May 2020 16:29:11,544 INFO : 45% Done

11 May 2020 16:29:11,570 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:11,570 INFO : Inserting MMP9

11 May 2020 16:29:11,572 INFO : 52% Done

11 May 2020 16:29:11,614 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:11,614 INFO : Inserting MUC1

11 May 2020 16:29:11,616 INFO : 57% Done

11 May 2020 16:29:11,646 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:11,647 INFO : 59% Done

11 May 2020 16:29:11,647 INFO : Inserting NCOA2

11 May 2020 16:29:11,648 INFO : 64% Done

11 May 2020 16:29:11,680 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:11,680 INFO : Inserting PSA

11 May 2020 16:29:11,682 INFO : 69% Done

11 May 2020 16:29:11,709 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:11,709 INFO : Inserting SMAD4

11 May 2020 16:29:11,710 INFO : 74% Done

11 May 2020 16:29:11,742 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:11,742 INFO : Inserting SPINK1

11 May 2020 16:29:11,743 INFO : 79% Done

11 May 2020 16:29:11,773 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:11,773 INFO : Inserting SPRC

11 May 2020 16:29:11,775 INFO : 84% Done

11 May 2020 16:29:11,804 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:11,804 INFO : Inserting TFF3

11 May 2020 16:29:11,806 INFO : 88% Done

11 May 2020 16:29:11,834 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:11,835 INFO : Inserting TGFB1

11 May 2020 16:29:11,836 INFO : 91% Done

11 May 2020 16:29:11,854 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:11,854 INFO : Inserting VEGFA

11 May 2020 16:29:11,856 INFO : 98% Done

11 May 2020 16:29:11,902 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:11,902 INFO : Done parsing Skyline document.

11 May 2020 16:29:11,904 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:29:11,916 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:29:11,939 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:29:11,948 INFO : Cleaning up temp tables

11 May 2020 16:29:12,301 INFO : Completed import of Skyline document from CPDR-FFPE-ID-727_2020-01-29_12-18-58.sky.zip

11 May 2020 16:29:12,303 INFO : 100% Done

11 May 2020 16:29:12,312 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80369/CPDR-FFPE-ID-727_2020-01-29_12-18-58.sky.zip into the system

11 May 2020 16:29:12,312 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80370/CPDR-FFPE-ID-884_2020-01-29_12-19-09/CPDR-FFPE-ID-884.skyd into the system

11 May 2020 16:29:12,313 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80370/CPDR-FFPE-ID-884_2020-01-29_12-19-09/CPDR-FFPE-ID-884.skyd into the system

11 May 2020 16:29:12,314 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80370/CPDR-FFPE-ID-884_2020-01-29_12-19-09.sky.zip into the system

11 May 2020 16:29:12,317 INFO : Starting import from CPDR-FFPE-ID-884_2020-01-29_12-19-09.sky.zip

11 May 2020 16:29:12,322 INFO : Starting to import Skyline document from CPDR-FFPE-ID-884_2020-01-29_12-19-09.sky.zip

11 May 2020 16:29:12,332 INFO : Expanding CPDR-FFPE-ID-884.skyd

11 May 2020 16:29:12,612 INFO : Expanding CPDR-FFPE-ID-884.sky.view

11 May 2020 16:29:12,612 INFO : Expanding CPDR-FFPE-ID-884.sky

11 May 2020 16:29:12,620 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:29:12,623 INFO : 5% Done

11 May 2020 16:29:12,789 INFO : Inserting ANXA2

11 May 2020 16:29:12,795 INFO : 13% Done

11 May 2020 16:29:12,861 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:12,861 INFO : Inserting CAMKK2

11 May 2020 16:29:12,864 INFO : 21% Done

11 May 2020 16:29:12,933 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:12,934 INFO : Inserting CCND1

11 May 2020 16:29:12,936 INFO : 26% Done

11 May 2020 16:29:12,988 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:12,988 INFO : Inserting EGFR

11 May 2020 16:29:12,991 INFO : 32% Done

11 May 2020 16:29:13,049 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:13,049 INFO : 33% Done

11 May 2020 16:29:13,050 INFO : Inserting ERG_pan

11 May 2020 16:29:13,052 INFO : 41% Done

11 May 2020 16:29:13,134 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:13,135 INFO : Inserting FOLH1

11 May 2020 16:29:13,137 INFO : 47% Done

11 May 2020 16:29:13,201 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:13,201 INFO : Inserting MMP9

11 May 2020 16:29:13,204 INFO : 57% Done

11 May 2020 16:29:13,291 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:13,291 INFO : Inserting MUC1

11 May 2020 16:29:13,294 INFO : 64% Done

11 May 2020 16:29:13,356 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:13,357 INFO : 65% Done

11 May 2020 16:29:13,357 INFO : Inserting NCOA2

11 May 2020 16:29:13,359 INFO : 70% Done

11 May 2020 16:29:13,406 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:13,406 INFO : Inserting PSA

11 May 2020 16:29:13,407 INFO : 73% Done

11 May 2020 16:29:13,436 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:13,437 INFO : Inserting SMAD4

11 May 2020 16:29:13,439 INFO : 77% Done

11 May 2020 16:29:13,488 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:13,488 INFO : Inserting SPINK1

11 May 2020 16:29:13,490 INFO : 81% Done

11 May 2020 16:29:13,528 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:13,528 INFO : 82% Done

11 May 2020 16:29:13,528 INFO : Inserting SPRC

11 May 2020 16:29:13,530 INFO : 87% Done

11 May 2020 16:29:13,565 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:13,565 INFO : Inserting TFF3

11 May 2020 16:29:13,567 INFO : 90% Done

11 May 2020 16:29:13,603 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:13,603 INFO : Inserting TGFB1

11 May 2020 16:29:13,604 INFO : 92% Done

11 May 2020 16:29:13,618 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:13,618 INFO : Inserting VEGFA

11 May 2020 16:29:13,620 INFO : 98% Done

11 May 2020 16:29:13,684 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:13,684 INFO : Done parsing Skyline document.

11 May 2020 16:29:13,686 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:29:13,700 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:29:13,733 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:29:13,746 INFO : Cleaning up temp tables

11 May 2020 16:29:14,097 INFO : Completed import of Skyline document from CPDR-FFPE-ID-884_2020-01-29_12-19-09.sky.zip

11 May 2020 16:29:14,098 INFO : 100% Done

11 May 2020 16:29:14,106 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80370/CPDR-FFPE-ID-884_2020-01-29_12-19-09.sky.zip into the system

11 May 2020 16:29:14,107 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80371/CPDR-FFPE-ID-652_2020-01-29_12-19-24/CPDR-FFPE-ID-652.skyd into the system

11 May 2020 16:29:14,108 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80371/CPDR-FFPE-ID-652_2020-01-29_12-19-24/CPDR-FFPE-ID-652.skyd into the system

11 May 2020 16:29:14,108 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80371/CPDR-FFPE-ID-652_2020-01-29_12-19-24.sky.zip into the system

11 May 2020 16:29:14,111 INFO : Starting import from CPDR-FFPE-ID-652_2020-01-29_12-19-24.sky.zip

11 May 2020 16:29:14,115 INFO : Starting to import Skyline document from CPDR-FFPE-ID-652_2020-01-29_12-19-24.sky.zip

11 May 2020 16:29:14,124 INFO : Expanding CPDR-FFPE-ID-652.skyd

11 May 2020 16:29:14,371 INFO : Expanding CPDR-FFPE-ID-652.sky.view

11 May 2020 16:29:14,372 INFO : Expanding CPDR-FFPE-ID-652.sky

11 May 2020 16:29:14,380 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:29:14,382 INFO : 5% Done

11 May 2020 16:29:14,505 INFO : Inserting ANXA2

11 May 2020 16:29:14,511 INFO : 15% Done

11 May 2020 16:29:14,594 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:14,594 INFO : Inserting CAMKK2

11 May 2020 16:29:14,597 INFO : 21% Done

11 May 2020 16:29:14,654 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:14,655 INFO : 22% Done

11 May 2020 16:29:14,655 INFO : Inserting CCND1

11 May 2020 16:29:14,657 INFO : 26% Done

11 May 2020 16:29:14,709 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:14,709 INFO : Inserting EGFR

11 May 2020 16:29:14,711 INFO : 33% Done

11 May 2020 16:29:14,760 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:14,760 INFO : Inserting ERG_pan

11 May 2020 16:29:14,762 INFO : 40% Done

11 May 2020 16:29:14,827 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:14,827 INFO : Inserting FOLH1

11 May 2020 16:29:14,828 INFO : 43% Done

11 May 2020 16:29:14,859 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:14,859 INFO : Inserting MMP9

11 May 2020 16:29:14,862 INFO : 51% Done

11 May 2020 16:29:14,925 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:14,925 INFO : Inserting MUC1

11 May 2020 16:29:14,927 INFO : 56% Done

11 May 2020 16:29:14,966 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:14,967 INFO : Inserting NCOA2

11 May 2020 16:29:14,969 INFO : 63% Done

11 May 2020 16:29:15,031 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:15,031 INFO : Inserting PSA

11 May 2020 16:29:15,033 INFO : 68% Done

11 May 2020 16:29:15,067 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:15,067 INFO : Inserting SMAD4

11 May 2020 16:29:15,070 INFO : 74% Done

11 May 2020 16:29:15,125 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:15,125 INFO : Inserting SPINK1

11 May 2020 16:29:15,127 INFO : 78% Done

11 May 2020 16:29:15,180 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:15,180 INFO : Inserting SPRC

11 May 2020 16:29:15,183 INFO : 83% Done

11 May 2020 16:29:15,232 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:15,232 INFO : Inserting TFF3

11 May 2020 16:29:15,235 INFO : 88% Done

11 May 2020 16:29:15,289 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:15,290 INFO : Inserting TGFB1

11 May 2020 16:29:15,291 INFO : 90% Done

11 May 2020 16:29:15,314 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:15,314 INFO : Inserting VEGFA

11 May 2020 16:29:15,317 INFO : 98% Done

11 May 2020 16:29:15,403 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:15,403 INFO : Done parsing Skyline document.

11 May 2020 16:29:15,405 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:29:15,419 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:29:15,450 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:29:15,462 INFO : Cleaning up temp tables

11 May 2020 16:29:15,811 INFO : Completed import of Skyline document from CPDR-FFPE-ID-652_2020-01-29_12-19-24.sky.zip

11 May 2020 16:29:15,812 INFO : 100% Done

11 May 2020 16:29:15,820 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80371/CPDR-FFPE-ID-652_2020-01-29_12-19-24.sky.zip into the system

11 May 2020 16:29:15,820 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80463/CPDR-FFPE-ID-742_2020-01-29_14-43-25/CPDR-FFPE-ID-742.skyd into the system

11 May 2020 16:29:15,821 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80463/CPDR-FFPE-ID-742_2020-01-29_14-43-25/CPDR-FFPE-ID-742.skyd into the system

11 May 2020 16:29:15,821 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80463/CPDR-FFPE-ID-742_2020-01-29_14-43-25.sky.zip into the system

11 May 2020 16:29:15,824 INFO : Starting import from CPDR-FFPE-ID-742_2020-01-29_14-43-25.sky.zip

11 May 2020 16:29:15,829 INFO : Starting to import Skyline document from CPDR-FFPE-ID-742_2020-01-29_14-43-25.sky.zip

11 May 2020 16:29:15,839 INFO : Expanding CPDR-FFPE-ID-742.skyd

11 May 2020 16:29:16,084 INFO : Expanding CPDR-FFPE-ID-742.sky.view

11 May 2020 16:29:16,085 INFO : Expanding CPDR-FFPE-ID-742.sky

11 May 2020 16:29:16,092 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 16:29:16,095 INFO : 5% Done

11 May 2020 16:29:16,213 INFO : Inserting ANXA2

11 May 2020 16:29:16,219 INFO : 15% Done

11 May 2020 16:29:16,331 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:16,332 INFO : Inserting CAMKK2

11 May 2020 16:29:16,334 INFO : 21% Done

11 May 2020 16:29:16,390 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:16,390 INFO : Inserting CCND1

11 May 2020 16:29:16,392 INFO : 27% Done

11 May 2020 16:29:16,446 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:16,446 INFO : Inserting EGFR

11 May 2020 16:29:16,448 INFO : 33% Done

11 May 2020 16:29:16,505 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:16,505 INFO : Inserting ERG_pan

11 May 2020 16:29:16,508 INFO : 41% Done

11 May 2020 16:29:16,571 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:16,571 INFO : Inserting FOLH1

11 May 2020 16:29:16,573 INFO : 44% Done

11 May 2020 16:29:16,603 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:16,603 INFO : Inserting MMP9

11 May 2020 16:29:16,605 INFO : 52% Done

11 May 2020 16:29:16,670 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:16,670 INFO : Inserting MUC1

11 May 2020 16:29:16,672 INFO : 58% Done

11 May 2020 16:29:16,713 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:16,713 INFO : Inserting NCOA2

11 May 2020 16:29:16,715 INFO : 64% Done

11 May 2020 16:29:16,773 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:16,773 INFO : Inserting PSA

11 May 2020 16:29:16,775 INFO : 69% Done

11 May 2020 16:29:16,826 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:16,826 INFO : Inserting SMAD4

11 May 2020 16:29:16,829 INFO : 75% Done

11 May 2020 16:29:16,881 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:16,882 INFO : Inserting SPINK1

11 May 2020 16:29:16,884 INFO : 79% Done

11 May 2020 16:29:16,924 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:16,925 INFO : Inserting SPRC

11 May 2020 16:29:16,927 INFO : 85% Done

11 May 2020 16:29:16,972 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:16,972 INFO : Inserting TFF3

11 May 2020 16:29:16,974 INFO : 88% Done

11 May 2020 16:29:17,010 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:17,010 INFO : 89% Done

11 May 2020 16:29:17,010 INFO : Inserting TGFB1

11 May 2020 16:29:17,022 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:17,022 INFO : Inserting VEGFA

11 May 2020 16:29:17,025 INFO : 98% Done

11 May 2020 16:29:17,094 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:17,094 INFO : Done parsing Skyline document.

11 May 2020 16:29:17,096 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:29:17,109 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:29:17,139 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:29:17,150 INFO : Cleaning up temp tables

11 May 2020 16:29:17,502 INFO : Completed import of Skyline document from CPDR-FFPE-ID-742_2020-01-29_14-43-25.sky.zip

11 May 2020 16:29:17,503 INFO : 100% Done

11 May 2020 16:29:17,511 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80463/CPDR-FFPE-ID-742_2020-01-29_14-43-25.sky.zip into the system

11 May 2020 16:29:17,511 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80464/CPDR-FFPE-ID-750_2020-01-29_14-44-35/CPDR-FFPE-ID-750.skyd into the system

11 May 2020 16:29:17,513 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80464/CPDR-FFPE-ID-750_2020-01-29_14-44-35/CPDR-FFPE-ID-750.skyd into the system

11 May 2020 16:29:17,513 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80464/CPDR-FFPE-ID-750_2020-01-29_14-44-35.sky.zip into the system

11 May 2020 16:29:17,517 INFO : Starting import from CPDR-FFPE-ID-750_2020-01-29_14-44-35.sky.zip

11 May 2020 16:29:17,521 INFO : Starting to import Skyline document from CPDR-FFPE-ID-750_2020-01-29_14-44-35.sky.zip

11 May 2020 16:29:17,531 INFO : Expanding CPDR-FFPE-ID-750.skyd

11 May 2020 16:29:17,803 INFO : Expanding CPDR-FFPE-ID-750.sky.view

11 May 2020 16:29:17,804 INFO : Expanding CPDR-FFPE-ID-750.sky

11 May 2020 16:29:17,812 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 16:29:17,815 INFO : 5% Done

11 May 2020 16:29:17,943 INFO : Inserting ANXA2

11 May 2020 16:29:17,949 INFO : 14% Done

11 May 2020 16:29:18,033 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:18,033 INFO : Inserting CAMKK2

11 May 2020 16:29:18,035 INFO : 21% Done

11 May 2020 16:29:18,100 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:18,100 INFO : Inserting CCND1

11 May 2020 16:29:18,102 INFO : 27% Done

11 May 2020 16:29:18,163 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:18,163 INFO : Inserting EGFR

11 May 2020 16:29:18,166 INFO : 32% Done

11 May 2020 16:29:18,229 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:18,229 INFO : Inserting ERG_pan

11 May 2020 16:29:18,231 INFO : 40% Done

11 May 2020 16:29:18,303 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:18,303 INFO : Inserting FOLH1

11 May 2020 16:29:18,305 INFO : 43% Done

11 May 2020 16:29:18,341 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:18,341 INFO : Inserting MMP9

11 May 2020 16:29:18,343 INFO : 51% Done

11 May 2020 16:29:18,409 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:18,409 INFO : Inserting MUC1

11 May 2020 16:29:18,411 INFO : 55% Done

11 May 2020 16:29:18,457 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:18,457 INFO : 56% Done

11 May 2020 16:29:18,457 INFO : Inserting NCOA2

11 May 2020 16:29:18,460 INFO : 62% Done

11 May 2020 16:29:18,519 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:18,519 INFO : 63% Done

11 May 2020 16:29:18,519 INFO : Inserting PSA

11 May 2020 16:29:18,521 INFO : 67% Done

11 May 2020 16:29:18,560 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:18,560 INFO : Inserting SMAD4

11 May 2020 16:29:18,562 INFO : 73% Done

11 May 2020 16:29:18,621 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:18,621 INFO : Inserting SPINK1

11 May 2020 16:29:18,623 INFO : 78% Done

11 May 2020 16:29:18,676 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:18,677 INFO : Inserting SPRC

11 May 2020 16:29:18,679 INFO : 84% Done

11 May 2020 16:29:18,728 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:18,728 INFO : Inserting TFF3

11 May 2020 16:29:18,730 INFO : 88% Done

11 May 2020 16:29:18,771 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:18,771 INFO : Inserting TGFB1

11 May 2020 16:29:18,772 INFO : 90% Done

11 May 2020 16:29:18,787 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:18,787 INFO : Inserting VEGFA

11 May 2020 16:29:18,790 INFO : 98% Done

11 May 2020 16:29:18,864 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:18,864 INFO : Done parsing Skyline document.

11 May 2020 16:29:18,866 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:29:18,879 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:29:18,914 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:29:18,927 INFO : Cleaning up temp tables

11 May 2020 16:29:19,278 INFO : Completed import of Skyline document from CPDR-FFPE-ID-750_2020-01-29_14-44-35.sky.zip

11 May 2020 16:29:19,280 INFO : 100% Done

11 May 2020 16:29:19,288 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80464/CPDR-FFPE-ID-750_2020-01-29_14-44-35.sky.zip into the system

11 May 2020 16:29:19,288 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80472/CPDR-FFPE-ID-887_2020-01-29_14-46-45/CPDR-FFPE-ID-887.skyd into the system

11 May 2020 16:29:19,289 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80472/CPDR-FFPE-ID-887_2020-01-29_14-46-45/CPDR-FFPE-ID-887.skyd into the system

11 May 2020 16:29:19,289 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80472/CPDR-FFPE-ID-887_2020-01-29_14-46-45.sky.zip into the system

11 May 2020 16:29:19,292 INFO : Starting import from CPDR-FFPE-ID-887_2020-01-29_14-46-45.sky.zip

11 May 2020 16:29:19,296 INFO : Starting to import Skyline document from CPDR-FFPE-ID-887_2020-01-29_14-46-45.sky.zip

11 May 2020 16:29:19,307 INFO : Expanding CPDR-FFPE-ID-887.skyd

11 May 2020 16:29:19,570 INFO : Expanding CPDR-FFPE-ID-887.sky.view

11 May 2020 16:29:19,570 INFO : Expanding CPDR-FFPE-ID-887.sky

11 May 2020 16:29:19,577 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 16:29:19,580 INFO : 6% Done

11 May 2020 16:29:19,757 INFO : Inserting ANXA2

11 May 2020 16:29:19,762 INFO : 14% Done

11 May 2020 16:29:19,827 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:19,827 INFO : Inserting CAMKK2

11 May 2020 16:29:19,830 INFO : 22% Done

11 May 2020 16:29:19,933 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:19,933 INFO : Inserting CCND1

11 May 2020 16:29:19,935 INFO : 27% Done

11 May 2020 16:29:19,982 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:19,983 INFO : Inserting EGFR

11 May 2020 16:29:19,985 INFO : 34% Done

11 May 2020 16:29:20,054 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:20,054 INFO : Inserting ERG_pan

11 May 2020 16:29:20,057 INFO : 39% Done

11 May 2020 16:29:20,153 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:20,153 INFO : Inserting FOLH1

11 May 2020 16:29:20,155 INFO : 44% Done

11 May 2020 16:29:20,278 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:20,278 INFO : Inserting MMP9

11 May 2020 16:29:20,281 INFO : 53% Done

11 May 2020 16:29:20,416 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:20,417 INFO : Inserting MUC1

11 May 2020 16:29:20,419 INFO : 59% Done

11 May 2020 16:29:20,512 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:20,513 INFO : Inserting NCOA2

11 May 2020 16:29:20,516 INFO : 66% Done

11 May 2020 16:29:20,614 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:20,614 INFO : Inserting PSA

11 May 2020 16:29:20,616 INFO : 70% Done

11 May 2020 16:29:20,683 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:20,684 INFO : Inserting SMAD4

11 May 2020 16:29:20,686 INFO : 74% Done

11 May 2020 16:29:20,772 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:20,772 INFO : 75% Done

11 May 2020 16:29:20,772 INFO : Inserting SPINK1

11 May 2020 16:29:20,775 INFO : 80% Done

11 May 2020 16:29:20,860 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:20,860 INFO : Inserting SPRC

11 May 2020 16:29:20,862 INFO : 84% Done

11 May 2020 16:29:20,949 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:20,950 INFO : Inserting TFF3

11 May 2020 16:29:20,952 INFO : 89% Done

11 May 2020 16:29:21,022 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:21,023 INFO : Inserting TGFB1

11 May 2020 16:29:21,024 INFO : 91% Done

11 May 2020 16:29:21,056 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:21,057 INFO : Inserting VEGFA

11 May 2020 16:29:21,059 INFO : 98% Done

11 May 2020 16:29:21,185 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:21,185 INFO : Done parsing Skyline document.

11 May 2020 16:29:21,187 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:29:21,217 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:29:21,290 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:29:21,318 INFO : Cleaning up temp tables

11 May 2020 16:29:21,663 INFO : Completed import of Skyline document from CPDR-FFPE-ID-887_2020-01-29_14-46-45.sky.zip

11 May 2020 16:29:21,665 INFO : 100% Done

11 May 2020 16:29:21,678 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80472/CPDR-FFPE-ID-887_2020-01-29_14-46-45.sky.zip into the system

11 May 2020 16:29:21,679 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80473/CPDR-FFPE-ID-890_2020-01-29_14-47-51/CPDR-FFPE-ID-890.skyd into the system

11 May 2020 16:29:21,680 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80473/CPDR-FFPE-ID-890_2020-01-29_14-47-51/CPDR-FFPE-ID-890.skyd into the system

11 May 2020 16:29:21,680 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80473/CPDR-FFPE-ID-890_2020-01-29_14-47-51.sky.zip into the system

11 May 2020 16:29:21,684 INFO : Starting import from CPDR-FFPE-ID-890_2020-01-29_14-47-51.sky.zip

11 May 2020 16:29:21,692 INFO : Starting to import Skyline document from CPDR-FFPE-ID-890_2020-01-29_14-47-51.sky.zip

11 May 2020 16:29:21,700 INFO : Expanding CPDR-FFPE-ID-890.skyd

11 May 2020 16:29:21,915 INFO : Expanding CPDR-FFPE-ID-890.sky.view

11 May 2020 16:29:21,916 INFO : Expanding CPDR-FFPE-ID-890.sky

11 May 2020 16:29:21,924 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 16:29:21,927 INFO : 5% Done

11 May 2020 16:29:22,114 INFO : Inserting ANXA2

11 May 2020 16:29:22,122 INFO : 13% Done

11 May 2020 16:29:22,216 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:22,216 INFO : Inserting CAMKK2

11 May 2020 16:29:22,219 INFO : 22% Done

11 May 2020 16:29:22,321 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:22,321 INFO : Inserting CCND1

11 May 2020 16:29:22,323 INFO : 27% Done

11 May 2020 16:29:22,412 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:22,412 INFO : Inserting EGFR

11 May 2020 16:29:22,415 INFO : 33% Done

11 May 2020 16:29:22,498 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:22,498 INFO : Inserting ERG_pan

11 May 2020 16:29:22,501 INFO : 39% Done

11 May 2020 16:29:22,581 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:22,581 INFO : Inserting FOLH1

11 May 2020 16:29:22,583 INFO : 43% Done

11 May 2020 16:29:22,636 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:22,636 INFO : Inserting MMP9

11 May 2020 16:29:22,638 INFO : 50% Done

11 May 2020 16:29:22,738 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:22,738 INFO : Inserting MUC1

11 May 2020 16:29:22,740 INFO : 55% Done

11 May 2020 16:29:22,800 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:22,800 INFO : Inserting NCOA2

11 May 2020 16:29:22,803 INFO : 62% Done

11 May 2020 16:29:22,896 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:22,896 INFO : Inserting PSA

11 May 2020 16:29:22,898 INFO : 67% Done

11 May 2020 16:29:22,954 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:22,954 INFO : Inserting SMAD4

11 May 2020 16:29:22,956 INFO : 73% Done

11 May 2020 16:29:23,043 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:23,043 INFO : Inserting SPINK1

11 May 2020 16:29:23,045 INFO : 78% Done

11 May 2020 16:29:23,132 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:23,132 INFO : Inserting SPRC

11 May 2020 16:29:23,134 INFO : 83% Done

11 May 2020 16:29:23,224 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:23,224 INFO : Inserting TFF3

11 May 2020 16:29:23,227 INFO : 88% Done

11 May 2020 16:29:23,296 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:23,296 INFO : Inserting TGFB1

11 May 2020 16:29:23,298 INFO : 90% Done

11 May 2020 16:29:23,330 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:23,330 INFO : Inserting VEGFA

11 May 2020 16:29:23,333 INFO : 98% Done

11 May 2020 16:29:23,447 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:23,447 INFO : Done parsing Skyline document.

11 May 2020 16:29:23,449 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:29:23,477 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:29:23,542 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:29:23,567 INFO : Cleaning up temp tables

11 May 2020 16:29:23,581 INFO : Completed import of Skyline document from CPDR-FFPE-ID-890_2020-01-29_14-47-51.sky.zip

11 May 2020 16:29:23,582 INFO : 100% Done

11 May 2020 16:29:23,593 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80473/CPDR-FFPE-ID-890_2020-01-29_14-47-51.sky.zip into the system

11 May 2020 16:29:23,594 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80383/CPDR-FFPE-ID-881_2020-01-29_12-22-13/CPDR-FFPE-ID-881.skyd into the system

11 May 2020 16:29:23,595 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80383/CPDR-FFPE-ID-881_2020-01-29_12-22-13/CPDR-FFPE-ID-881.skyd into the system

11 May 2020 16:29:23,595 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80383/CPDR-FFPE-ID-881_2020-01-29_12-22-13.sky.zip into the system

11 May 2020 16:29:23,599 INFO : Starting import from CPDR-FFPE-ID-881_2020-01-29_12-22-13.sky.zip

11 May 2020 16:29:23,606 INFO : Starting to import Skyline document from CPDR-FFPE-ID-881_2020-01-29_12-22-13.sky.zip

11 May 2020 16:29:23,614 INFO : Expanding CPDR-FFPE-ID-881.skyd

11 May 2020 16:29:23,834 INFO : Expanding CPDR-FFPE-ID-881.sky.view

11 May 2020 16:29:23,834 INFO : Expanding CPDR-FFPE-ID-881.sky

11 May 2020 16:29:23,843 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:29:23,846 INFO : 5% Done

11 May 2020 16:29:24,034 INFO : Inserting ANXA2

11 May 2020 16:29:24,042 INFO : 13% Done

11 May 2020 16:29:24,126 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:24,127 INFO : Inserting CAMKK2

11 May 2020 16:29:24,129 INFO : 20% Done

11 May 2020 16:29:24,225 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:24,226 INFO : Inserting CCND1

11 May 2020 16:29:24,228 INFO : 26% Done

11 May 2020 16:29:24,303 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:24,303 INFO : Inserting EGFR

11 May 2020 16:29:24,305 INFO : 32% Done

11 May 2020 16:29:24,385 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:24,386 INFO : Inserting ERG_pan

11 May 2020 16:29:24,388 INFO : 40% Done

11 May 2020 16:29:24,485 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:24,485 INFO : 41% Done

11 May 2020 16:29:24,486 INFO : Inserting FOLH1

11 May 2020 16:29:24,488 INFO : 45% Done

11 May 2020 16:29:24,537 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:24,538 INFO : Inserting MMP9

11 May 2020 16:29:24,540 INFO : 53% Done

11 May 2020 16:29:24,644 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:24,644 INFO : Inserting MUC1

11 May 2020 16:29:24,646 INFO : 58% Done

11 May 2020 16:29:24,714 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:24,714 INFO : Inserting NCOA2

11 May 2020 16:29:24,717 INFO : 65% Done

11 May 2020 16:29:24,799 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:24,799 INFO : Inserting PSA

11 May 2020 16:29:24,801 INFO : 69% Done

11 May 2020 16:29:24,859 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:24,859 INFO : Inserting SMAD4

11 May 2020 16:29:24,862 INFO : 75% Done

11 May 2020 16:29:24,939 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:24,939 INFO : Inserting SPINK1

11 May 2020 16:29:24,941 INFO : 80% Done

11 May 2020 16:29:25,067 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:25,067 INFO : Inserting SPRC

11 May 2020 16:29:25,070 INFO : 83% Done

11 May 2020 16:29:25,129 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:25,130 INFO : 85% Done

11 May 2020 16:29:25,130 INFO : Inserting TFF3

11 May 2020 16:29:25,132 INFO : 90% Done

11 May 2020 16:29:25,195 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:25,195 INFO : Inserting TGFB1

11 May 2020 16:29:25,197 INFO : 91% Done

11 May 2020 16:29:25,223 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:25,223 INFO : Inserting VEGFA

11 May 2020 16:29:25,225 INFO : 98% Done

11 May 2020 16:29:25,318 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:25,318 INFO : Done parsing Skyline document.

11 May 2020 16:29:25,320 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:29:25,348 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:29:25,409 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:29:25,433 INFO : Cleaning up temp tables

11 May 2020 16:29:25,787 INFO : Completed import of Skyline document from CPDR-FFPE-ID-881_2020-01-29_12-22-13.sky.zip

11 May 2020 16:29:25,789 INFO : 100% Done

11 May 2020 16:29:25,801 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80383/CPDR-FFPE-ID-881_2020-01-29_12-22-13.sky.zip into the system

11 May 2020 16:29:25,801 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80396/CPDR-FFPE-ID-855_2020-01-29_12-25-41/CPDR-FFPE-ID-855.skyd into the system

11 May 2020 16:29:25,803 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80396/CPDR-FFPE-ID-855_2020-01-29_12-25-41/CPDR-FFPE-ID-855.skyd into the system

11 May 2020 16:29:25,803 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80396/CPDR-FFPE-ID-855_2020-01-29_12-25-41.sky.zip into the system

11 May 2020 16:29:25,807 INFO : Starting import from CPDR-FFPE-ID-855_2020-01-29_12-25-41.sky.zip

11 May 2020 16:29:25,813 INFO : Starting to import Skyline document from CPDR-FFPE-ID-855_2020-01-29_12-25-41.sky.zip

11 May 2020 16:29:25,824 INFO : Expanding CPDR-FFPE-ID-855.skyd

11 May 2020 16:29:26,113 INFO : Expanding CPDR-FFPE-ID-855.sky.view

11 May 2020 16:29:26,114 INFO : Expanding CPDR-FFPE-ID-855.sky

11 May 2020 16:29:26,123 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:29:26,127 INFO : 6% Done

11 May 2020 16:29:26,511 INFO : Inserting ANXA2

11 May 2020 16:29:26,519 INFO : 14% Done

11 May 2020 16:29:26,666 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:26,666 INFO : Inserting CAMKK2

11 May 2020 16:29:26,669 INFO : 20% Done

11 May 2020 16:29:26,785 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:26,785 INFO : Inserting CCND1

11 May 2020 16:29:26,788 INFO : 26% Done

11 May 2020 16:29:26,915 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:26,915 INFO : Inserting EGFR

11 May 2020 16:29:26,918 INFO : 31% Done

11 May 2020 16:29:27,020 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:27,020 INFO : 32% Done

11 May 2020 16:29:27,020 INFO : Inserting ERG_pan

11 May 2020 16:29:27,023 INFO : 39% Done

11 May 2020 16:29:27,154 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:27,155 INFO : Inserting FOLH1

11 May 2020 16:29:27,157 INFO : 42% Done

11 May 2020 16:29:27,271 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:27,272 INFO : Inserting MMP9

11 May 2020 16:29:27,275 INFO : 49% Done

11 May 2020 16:29:27,412 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:27,412 INFO : Inserting MUC1

11 May 2020 16:29:27,414 INFO : 54% Done

11 May 2020 16:29:27,505 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:27,505 INFO : Inserting NCOA2

11 May 2020 16:29:27,509 INFO : 61% Done

11 May 2020 16:29:27,663 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:27,663 INFO : Inserting PSA

11 May 2020 16:29:27,666 INFO : 66% Done

11 May 2020 16:29:27,769 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:27,769 INFO : Inserting SMAD4

11 May 2020 16:29:27,772 INFO : 72% Done

11 May 2020 16:29:27,884 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:27,884 INFO : 73% Done

11 May 2020 16:29:27,884 INFO : Inserting SPINK1

11 May 2020 16:29:27,887 INFO : 77% Done

11 May 2020 16:29:28,008 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:28,008 INFO : Inserting SPRC

11 May 2020 16:29:28,011 INFO : 83% Done

11 May 2020 16:29:28,134 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:28,134 INFO : Inserting TFF3

11 May 2020 16:29:28,137 INFO : 89% Done

11 May 2020 16:29:28,243 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:28,243 INFO : Inserting TGFB1

11 May 2020 16:29:28,245 INFO : 91% Done

11 May 2020 16:29:28,287 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:28,287 INFO : Inserting VEGFA

11 May 2020 16:29:28,290 INFO : 98% Done

11 May 2020 16:29:28,440 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:28,440 INFO : Done parsing Skyline document.

11 May 2020 16:29:28,442 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:29:28,475 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:29:28,570 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:29:28,606 INFO : Cleaning up temp tables

11 May 2020 16:29:28,964 INFO : Completed import of Skyline document from CPDR-FFPE-ID-855_2020-01-29_12-25-41.sky.zip

11 May 2020 16:29:28,966 INFO : 100% Done

11 May 2020 16:29:28,975 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80396/CPDR-FFPE-ID-855_2020-01-29_12-25-41.sky.zip into the system

11 May 2020 16:29:28,976 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80398/CPDR-FFPE-ID-1222_2020-01-29_12-26-22/CPDR-FFPE-ID-1222.skyd into the system

11 May 2020 16:29:28,976 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80398/CPDR-FFPE-ID-1222_2020-01-29_12-26-22/CPDR-FFPE-ID-1222.skyd into the system

11 May 2020 16:29:28,976 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80398/CPDR-FFPE-ID-1222_2020-01-29_12-26-22.sky.zip into the system

11 May 2020 16:29:28,979 INFO : Starting import from CPDR-FFPE-ID-1222_2020-01-29_12-26-22.sky.zip

11 May 2020 16:29:28,984 INFO : Starting to import Skyline document from CPDR-FFPE-ID-1222_2020-01-29_12-26-22.sky.zip

11 May 2020 16:29:28,989 INFO : Expanding CPDR-FFPE-ID-1222.skyd

11 May 2020 16:29:29,091 INFO : Expanding CPDR-FFPE-ID-1222.sky.view

11 May 2020 16:29:29,092 INFO : Expanding CPDR-FFPE-ID-1222.sky

11 May 2020 16:29:29,097 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:29:29,099 INFO : 6% Done

11 May 2020 16:29:29,280 INFO : Inserting ANXA2

11 May 2020 16:29:29,286 INFO : 14% Done

11 May 2020 16:29:29,417 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:29,417 INFO : Inserting CAMKK2

11 May 2020 16:29:29,419 INFO : 21% Done

11 May 2020 16:29:29,501 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:29,501 INFO : Inserting CCND1

11 May 2020 16:29:29,502 INFO : 26% Done

11 May 2020 16:29:29,571 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:29,571 INFO : Inserting EGFR

11 May 2020 16:29:29,572 INFO : 32% Done

11 May 2020 16:29:29,636 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:29,636 INFO : Inserting ERG_pan

11 May 2020 16:29:29,637 INFO : 39% Done

11 May 2020 16:29:29,714 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:29,714 INFO : 40% Done

11 May 2020 16:29:29,714 INFO : Inserting FOLH1

11 May 2020 16:29:29,715 INFO : 43% Done

11 May 2020 16:29:29,751 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:29,751 INFO : Inserting MMP9

11 May 2020 16:29:29,753 INFO : 51% Done

11 May 2020 16:29:29,847 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:29,847 INFO : Inserting MUC1

11 May 2020 16:29:29,849 INFO : 55% Done

11 May 2020 16:29:29,897 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:29,897 INFO : Inserting NCOA2

11 May 2020 16:29:29,898 INFO : 63% Done

11 May 2020 16:29:29,975 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:29,975 INFO : Inserting PSA

11 May 2020 16:29:29,977 INFO : 66% Done

11 May 2020 16:29:30,017 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:30,017 INFO : Inserting SMAD4

11 May 2020 16:29:30,019 INFO : 73% Done

11 May 2020 16:29:30,130 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:30,130 INFO : Inserting SPINK1

11 May 2020 16:29:30,131 INFO : 78% Done

11 May 2020 16:29:30,192 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:30,192 INFO : Inserting SPRC

11 May 2020 16:29:30,193 INFO : 84% Done

11 May 2020 16:29:30,250 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:30,250 INFO : Inserting TFF3

11 May 2020 16:29:30,251 INFO : 88% Done

11 May 2020 16:29:30,294 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:30,294 INFO : Inserting TGFB1

11 May 2020 16:29:30,295 INFO : 89% Done

11 May 2020 16:29:30,310 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:30,310 INFO : Inserting VEGFA

11 May 2020 16:29:30,312 INFO : 98% Done

11 May 2020 16:29:30,404 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:30,404 INFO : Done parsing Skyline document.

11 May 2020 16:29:30,405 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:29:30,428 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:29:30,485 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:29:30,507 INFO : Cleaning up temp tables

11 May 2020 16:29:30,510 INFO : Completed import of Skyline document from CPDR-FFPE-ID-1222_2020-01-29_12-26-22.sky.zip

11 May 2020 16:29:30,520 INFO : 100% Done

11 May 2020 16:29:30,528 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80398/CPDR-FFPE-ID-1222_2020-01-29_12-26-22.sky.zip into the system

11 May 2020 16:29:30,528 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80400/CPDR-FFPE-ID-1053_2020-01-29_12-27-02/CPDR-FFPE-ID-1053.skyd into the system

11 May 2020 16:29:30,528 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80400/CPDR-FFPE-ID-1053_2020-01-29_12-27-02/CPDR-FFPE-ID-1053.skyd into the system

11 May 2020 16:29:30,528 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80400/CPDR-FFPE-ID-1053_2020-01-29_12-27-02.sky.zip into the system

11 May 2020 16:29:30,531 INFO : Starting import from CPDR-FFPE-ID-1053_2020-01-29_12-27-02.sky.zip

11 May 2020 16:29:30,535 INFO : Starting to import Skyline document from CPDR-FFPE-ID-1053_2020-01-29_12-27-02.sky.zip

11 May 2020 16:29:30,541 INFO : Expanding CPDR-FFPE-ID-1053.skyd

11 May 2020 16:29:30,645 INFO : Expanding CPDR-FFPE-ID-1053.sky.view

11 May 2020 16:29:30,646 INFO : Expanding CPDR-FFPE-ID-1053.sky

11 May 2020 16:29:30,651 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:29:30,653 INFO : 5% Done

11 May 2020 16:29:30,819 INFO : Inserting ANXA2

11 May 2020 16:29:30,825 INFO : 13% Done

11 May 2020 16:29:30,914 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:30,914 INFO : Inserting CAMKK2

11 May 2020 16:29:30,916 INFO : 22% Done

11 May 2020 16:29:31,101 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:31,101 INFO : Inserting CCND1

11 May 2020 16:29:31,104 INFO : 28% Done

11 May 2020 16:29:31,199 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:31,199 INFO : Inserting EGFR

11 May 2020 16:29:31,202 INFO : 34% Done

11 May 2020 16:29:31,290 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:31,290 INFO : Inserting ERG_pan

11 May 2020 16:29:31,293 INFO : 41% Done

11 May 2020 16:29:31,402 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:31,402 INFO : Inserting FOLH1

11 May 2020 16:29:31,405 INFO : 44% Done

11 May 2020 16:29:31,459 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:31,459 INFO : Inserting MMP9

11 May 2020 16:29:31,462 INFO : 51% Done

11 May 2020 16:29:31,595 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:31,595 INFO : Inserting MUC1

11 May 2020 16:29:31,598 INFO : 56% Done

11 May 2020 16:29:31,677 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:31,677 INFO : Inserting NCOA2

11 May 2020 16:29:31,680 INFO : 63% Done

11 May 2020 16:29:31,789 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:31,789 INFO : Inserting PSA

11 May 2020 16:29:31,791 INFO : 66% Done

11 May 2020 16:29:31,853 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:31,853 INFO : 67% Done

11 May 2020 16:29:31,853 INFO : Inserting SMAD4

11 May 2020 16:29:31,856 INFO : 74% Done

11 May 2020 16:29:31,970 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:31,971 INFO : Inserting SPINK1

11 May 2020 16:29:31,973 INFO : 79% Done

11 May 2020 16:29:32,068 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:32,068 INFO : Inserting SPRC

11 May 2020 16:29:32,070 INFO : 84% Done

11 May 2020 16:29:32,164 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:32,164 INFO : Inserting TFF3

11 May 2020 16:29:32,166 INFO : 88% Done

11 May 2020 16:29:32,233 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:32,234 INFO : Inserting TGFB1

11 May 2020 16:29:32,236 INFO : 90% Done

11 May 2020 16:29:32,259 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:32,260 INFO : Inserting VEGFA

11 May 2020 16:29:32,263 INFO : 98% Done

11 May 2020 16:29:32,403 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:32,403 INFO : Done parsing Skyline document.

11 May 2020 16:29:32,405 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:29:32,434 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:29:32,512 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:29:32,541 INFO : Cleaning up temp tables

11 May 2020 16:29:32,895 INFO : Completed import of Skyline document from CPDR-FFPE-ID-1053_2020-01-29_12-27-02.sky.zip

11 May 2020 16:29:32,897 INFO : 100% Done

11 May 2020 16:29:32,908 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80400/CPDR-FFPE-ID-1053_2020-01-29_12-27-02.sky.zip into the system

11 May 2020 16:29:32,908 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80404/CPDR-FFPE-ID-1484_2020-01-29_12-31-13/CPDR-FFPE-ID-1484.skyd into the system

11 May 2020 16:29:32,910 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80404/CPDR-FFPE-ID-1484_2020-01-29_12-31-13/CPDR-FFPE-ID-1484.skyd into the system

11 May 2020 16:29:32,910 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80404/CPDR-FFPE-ID-1484_2020-01-29_12-31-13.sky.zip into the system

11 May 2020 16:29:32,914 INFO : Starting import from CPDR-FFPE-ID-1484_2020-01-29_12-31-13.sky.zip

11 May 2020 16:29:32,920 INFO : Starting to import Skyline document from CPDR-FFPE-ID-1484_2020-01-29_12-31-13.sky.zip

11 May 2020 16:29:32,934 INFO : Expanding CPDR-FFPE-ID-1484.skyd

11 May 2020 16:29:33,305 INFO : Expanding CPDR-FFPE-ID-1484.sky.view

11 May 2020 16:29:33,306 INFO : Expanding CPDR-FFPE-ID-1484.sky

11 May 2020 16:29:33,316 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:29:33,319 INFO : 6% Done

11 May 2020 16:29:33,663 INFO : Inserting ANXA2

11 May 2020 16:29:33,670 INFO : 14% Done

11 May 2020 16:29:33,801 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:33,802 INFO : Inserting CAMKK2

11 May 2020 16:29:33,805 INFO : 21% Done

11 May 2020 16:29:33,946 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:33,946 INFO : Inserting CCND1

11 May 2020 16:29:33,949 INFO : 27% Done

11 May 2020 16:29:34,066 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:34,066 INFO : Inserting EGFR

11 May 2020 16:29:34,070 INFO : 34% Done

11 May 2020 16:29:34,193 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:34,193 INFO : Inserting ERG_pan

11 May 2020 16:29:34,197 INFO : 42% Done

11 May 2020 16:29:34,376 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:34,376 INFO : Inserting FOLH1

11 May 2020 16:29:34,378 INFO : 47% Done

11 May 2020 16:29:34,477 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:34,477 INFO : Inserting MMP9

11 May 2020 16:29:34,480 INFO : 54% Done

11 May 2020 16:29:34,634 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:34,634 INFO : Inserting MUC1

11 May 2020 16:29:34,637 INFO : 60% Done

11 May 2020 16:29:34,753 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:34,754 INFO : 61% Done

11 May 2020 16:29:34,754 INFO : Inserting NCOA2

11 May 2020 16:29:34,757 INFO : 68% Done

11 May 2020 16:29:34,897 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:34,897 INFO : Inserting PSA

11 May 2020 16:29:34,900 INFO : 71% Done

11 May 2020 16:29:34,987 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:34,987 INFO : Inserting SMAD4

11 May 2020 16:29:34,990 INFO : 77% Done

11 May 2020 16:29:35,115 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:35,115 INFO : Inserting SPINK1

11 May 2020 16:29:35,118 INFO : 81% Done

11 May 2020 16:29:35,219 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:35,219 INFO : Inserting SPRC

11 May 2020 16:29:35,221 INFO : 86% Done

11 May 2020 16:29:35,318 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:35,318 INFO : Inserting TFF3

11 May 2020 16:29:35,321 INFO : 90% Done

11 May 2020 16:29:35,410 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:35,410 INFO : Inserting TGFB1

11 May 2020 16:29:35,412 INFO : 93% Done

11 May 2020 16:29:35,462 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:35,462 INFO : Inserting VEGFA

11 May 2020 16:29:35,465 INFO : 98% Done

11 May 2020 16:29:35,586 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:35,586 INFO : Done parsing Skyline document.

11 May 2020 16:29:35,588 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:29:35,621 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:29:35,746 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:29:35,785 INFO : Cleaning up temp tables

11 May 2020 16:29:36,190 INFO : Completed import of Skyline document from CPDR-FFPE-ID-1484_2020-01-29_12-31-13.sky.zip

11 May 2020 16:29:36,192 INFO : 100% Done

11 May 2020 16:29:36,204 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80404/CPDR-FFPE-ID-1484_2020-01-29_12-31-13.sky.zip into the system

11 May 2020 16:29:36,204 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80408/CPDR-FFPE-ID-902_2020-01-29_12-32-38/CPDR-FFPE-ID-902.skyd into the system

11 May 2020 16:29:36,206 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80408/CPDR-FFPE-ID-902_2020-01-29_12-32-38/CPDR-FFPE-ID-902.skyd into the system

11 May 2020 16:29:36,206 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80408/CPDR-FFPE-ID-902_2020-01-29_12-32-38.sky.zip into the system

11 May 2020 16:29:36,209 INFO : Starting import from CPDR-FFPE-ID-902_2020-01-29_12-32-38.sky.zip

11 May 2020 16:29:36,217 INFO : Starting to import Skyline document from CPDR-FFPE-ID-902_2020-01-29_12-32-38.sky.zip

11 May 2020 16:29:36,226 INFO : Expanding CPDR-FFPE-ID-902.skyd

11 May 2020 16:29:36,505 INFO : Expanding CPDR-FFPE-ID-902.sky.view

11 May 2020 16:29:36,506 INFO : Expanding CPDR-FFPE-ID-902.sky

11 May 2020 16:29:36,515 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:29:36,518 INFO : 5% Done

11 May 2020 16:29:36,748 INFO : Inserting ANXA2

11 May 2020 16:29:36,756 INFO : 12% Done

11 May 2020 16:29:36,854 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:36,854 INFO : Inserting CAMKK2

11 May 2020 16:29:36,857 INFO : 20% Done

11 May 2020 16:29:37,134 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:37,134 INFO : Inserting CCND1

11 May 2020 16:29:37,137 INFO : 26% Done

11 May 2020 16:29:37,231 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:37,231 INFO : Inserting EGFR

11 May 2020 16:29:37,234 INFO : 32% Done

11 May 2020 16:29:37,339 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:37,339 INFO : Inserting ERG_pan

11 May 2020 16:29:37,342 INFO : 39% Done

11 May 2020 16:29:37,479 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:37,479 INFO : Inserting FOLH1

11 May 2020 16:29:37,481 INFO : 43% Done

11 May 2020 16:29:37,529 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:37,529 INFO : Inserting MMP9

11 May 2020 16:29:37,532 INFO : 50% Done

11 May 2020 16:29:37,656 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:37,656 INFO : Inserting MUC1

11 May 2020 16:29:37,660 INFO : 54% Done

11 May 2020 16:29:37,752 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:37,752 INFO : Inserting NCOA2

11 May 2020 16:29:37,755 INFO : 62% Done

11 May 2020 16:29:37,865 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:37,865 INFO : Inserting PSA

11 May 2020 16:29:37,867 INFO : 66% Done

11 May 2020 16:29:37,941 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:37,941 INFO : Inserting SMAD4

11 May 2020 16:29:37,944 INFO : 73% Done

11 May 2020 16:29:38,031 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:38,031 INFO : Inserting SPINK1

11 May 2020 16:29:38,034 INFO : 77% Done

11 May 2020 16:29:38,116 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:38,117 INFO : Inserting SPRC

11 May 2020 16:29:38,119 INFO : 82% Done

11 May 2020 16:29:38,199 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:38,200 INFO : Inserting TFF3

11 May 2020 16:29:38,202 INFO : 87% Done

11 May 2020 16:29:38,296 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:38,296 INFO : Inserting TGFB1

11 May 2020 16:29:38,298 INFO : 90% Done

11 May 2020 16:29:38,343 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:38,343 INFO : 91% Done

11 May 2020 16:29:38,343 INFO : Inserting VEGFA

11 May 2020 16:29:38,346 INFO : 98% Done

11 May 2020 16:29:38,483 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:38,483 INFO : Done parsing Skyline document.

11 May 2020 16:29:38,485 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:29:38,516 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:29:38,595 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:29:38,625 INFO : Cleaning up temp tables

11 May 2020 16:29:38,958 INFO : Completed import of Skyline document from CPDR-FFPE-ID-902_2020-01-29_12-32-38.sky.zip

11 May 2020 16:29:38,960 INFO : 100% Done

11 May 2020 16:29:38,972 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80408/CPDR-FFPE-ID-902_2020-01-29_12-32-38.sky.zip into the system

11 May 2020 16:29:38,972 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80414/CPDR-FFPE-ID-1187_2020-01-29_12-34-08/CPDR-FFPE-ID-1187.skyd into the system

11 May 2020 16:29:38,974 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80414/CPDR-FFPE-ID-1187_2020-01-29_12-34-08/CPDR-FFPE-ID-1187.skyd into the system

11 May 2020 16:29:38,974 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80414/CPDR-FFPE-ID-1187_2020-01-29_12-34-08.sky.zip into the system

11 May 2020 16:29:38,977 INFO : Starting import from CPDR-FFPE-ID-1187_2020-01-29_12-34-08.sky.zip

11 May 2020 16:29:38,984 INFO : Starting to import Skyline document from CPDR-FFPE-ID-1187_2020-01-29_12-34-08.sky.zip

11 May 2020 16:29:38,994 INFO : Expanding CPDR-FFPE-ID-1187.skyd

11 May 2020 16:29:39,256 INFO : Expanding CPDR-FFPE-ID-1187.sky.view

11 May 2020 16:29:39,257 INFO : Expanding CPDR-FFPE-ID-1187.sky

11 May 2020 16:29:39,266 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:29:39,269 INFO : 5% Done

11 May 2020 16:29:39,551 INFO : Inserting ANXA2

11 May 2020 16:29:39,559 INFO : 13% Done

11 May 2020 16:29:39,663 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:39,663 INFO : Inserting CAMKK2

11 May 2020 16:29:39,666 INFO : 20% Done

11 May 2020 16:29:39,782 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:39,782 INFO : 21% Done

11 May 2020 16:29:39,782 INFO : Inserting CCND1

11 May 2020 16:29:39,785 INFO : 27% Done

11 May 2020 16:29:39,901 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:39,901 INFO : Inserting EGFR

11 May 2020 16:29:39,903 INFO : 33% Done

11 May 2020 16:29:40,000 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:40,000 INFO : Inserting ERG_pan

11 May 2020 16:29:40,003 INFO : 41% Done

11 May 2020 16:29:40,120 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:40,120 INFO : Inserting FOLH1

11 May 2020 16:29:40,122 INFO : 45% Done

11 May 2020 16:29:40,190 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:40,190 INFO : Inserting MMP9

11 May 2020 16:29:40,193 INFO : 54% Done

11 May 2020 16:29:40,319 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:40,320 INFO : Inserting MUC1

11 May 2020 16:29:40,322 INFO : 59% Done

11 May 2020 16:29:40,417 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:40,418 INFO : Inserting NCOA2

11 May 2020 16:29:40,420 INFO : 65% Done

11 May 2020 16:29:40,510 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:40,510 INFO : Inserting PSA

11 May 2020 16:29:40,512 INFO : 70% Done

11 May 2020 16:29:40,575 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:40,575 INFO : Inserting SMAD4

11 May 2020 16:29:40,577 INFO : 74% Done

11 May 2020 16:29:40,672 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:40,672 INFO : Inserting SPINK1

11 May 2020 16:29:40,674 INFO : 79% Done

11 May 2020 16:29:40,754 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:40,754 INFO : Inserting SPRC

11 May 2020 16:29:40,757 INFO : 85% Done

11 May 2020 16:29:40,844 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:40,844 INFO : Inserting TFF3

11 May 2020 16:29:40,846 INFO : 89% Done

11 May 2020 16:29:40,910 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:40,910 INFO : Inserting TGFB1

11 May 2020 16:29:40,912 INFO : 91% Done

11 May 2020 16:29:40,959 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:40,960 INFO : Inserting VEGFA

11 May 2020 16:29:40,963 INFO : 98% Done

11 May 2020 16:29:41,082 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:41,082 INFO : Done parsing Skyline document.

11 May 2020 16:29:41,084 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:29:41,114 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:29:41,190 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:29:41,218 INFO : Cleaning up temp tables

11 May 2020 16:29:41,573 INFO : Completed import of Skyline document from CPDR-FFPE-ID-1187_2020-01-29_12-34-08.sky.zip

11 May 2020 16:29:41,574 INFO : 100% Done

11 May 2020 16:29:41,585 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80414/CPDR-FFPE-ID-1187_2020-01-29_12-34-08.sky.zip into the system

11 May 2020 16:29:41,586 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80423/CPDR-FFPE-ID-1326_2020-01-29_12-36-23/CPDR-FFPE-ID-1326.skyd into the system

11 May 2020 16:29:41,587 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80423/CPDR-FFPE-ID-1326_2020-01-29_12-36-23/CPDR-FFPE-ID-1326.skyd into the system

11 May 2020 16:29:41,587 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80423/CPDR-FFPE-ID-1326_2020-01-29_12-36-23.sky.zip into the system

11 May 2020 16:29:41,591 INFO : Starting import from CPDR-FFPE-ID-1326_2020-01-29_12-36-23.sky.zip

11 May 2020 16:29:41,597 INFO : Starting to import Skyline document from CPDR-FFPE-ID-1326_2020-01-29_12-36-23.sky.zip

11 May 2020 16:29:41,607 INFO : Expanding CPDR-FFPE-ID-1326.skyd

11 May 2020 16:29:41,863 INFO : Expanding CPDR-FFPE-ID-1326.sky.view

11 May 2020 16:29:41,863 INFO : Expanding CPDR-FFPE-ID-1326.sky

11 May 2020 16:29:41,872 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:29:41,876 INFO : 5% Done

11 May 2020 16:29:42,048 INFO : Inserting ANXA2

11 May 2020 16:29:42,051 INFO : 14% Done

11 May 2020 16:29:42,104 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:42,104 INFO : Inserting CAMKK2

11 May 2020 16:29:42,105 INFO : 22% Done

11 May 2020 16:29:42,175 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:42,175 INFO : Inserting CCND1

11 May 2020 16:29:42,176 INFO : 26% Done

11 May 2020 16:29:42,218 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:42,218 INFO : Inserting EGFR

11 May 2020 16:29:42,220 INFO : 33% Done

11 May 2020 16:29:42,264 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:42,264 INFO : 34% Done

11 May 2020 16:29:42,264 INFO : Inserting ERG_pan

11 May 2020 16:29:42,265 INFO : 41% Done

11 May 2020 16:29:42,322 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:42,322 INFO : Inserting FOLH1

11 May 2020 16:29:42,323 INFO : 45% Done

11 May 2020 16:29:42,351 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:42,351 INFO : Inserting MMP9

11 May 2020 16:29:42,352 INFO : 54% Done

11 May 2020 16:29:42,413 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:42,413 INFO : Inserting MUC1

11 May 2020 16:29:42,414 INFO : 59% Done

11 May 2020 16:29:42,454 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:42,454 INFO : Inserting NCOA2

11 May 2020 16:29:42,456 INFO : 66% Done

11 May 2020 16:29:42,508 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:42,508 INFO : Inserting PSA

11 May 2020 16:29:42,509 INFO : 69% Done

11 May 2020 16:29:42,540 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:42,540 INFO : Inserting SMAD4

11 May 2020 16:29:42,541 INFO : 75% Done

11 May 2020 16:29:42,589 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:42,589 INFO : Inserting SPINK1

11 May 2020 16:29:42,590 INFO : 79% Done

11 May 2020 16:29:42,629 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:42,629 INFO : Inserting SPRC

11 May 2020 16:29:42,631 INFO : 84% Done

11 May 2020 16:29:42,669 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:42,669 INFO : Inserting TFF3

11 May 2020 16:29:42,670 INFO : 88% Done

11 May 2020 16:29:42,705 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:42,705 INFO : Inserting TGFB1

11 May 2020 16:29:42,706 INFO : 90% Done

11 May 2020 16:29:42,723 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:42,723 INFO : Inserting VEGFA

11 May 2020 16:29:42,725 INFO : 98% Done

11 May 2020 16:29:42,793 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:42,793 INFO : Done parsing Skyline document.

11 May 2020 16:29:42,794 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:29:42,809 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:29:42,844 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:29:42,857 INFO : Cleaning up temp tables

11 May 2020 16:29:43,117 INFO : Completed import of Skyline document from CPDR-FFPE-ID-1326_2020-01-29_12-36-23.sky.zip

11 May 2020 16:29:43,118 INFO : 100% Done

11 May 2020 16:29:43,126 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80423/CPDR-FFPE-ID-1326_2020-01-29_12-36-23.sky.zip into the system

11 May 2020 16:29:43,126 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80426/CPDR-FFPE-ID-1641_2020-01-29_12-37-12/CPDR-FFPE-ID-1641.skyd into the system

11 May 2020 16:29:43,127 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80426/CPDR-FFPE-ID-1641_2020-01-29_12-37-12/CPDR-FFPE-ID-1641.skyd into the system

11 May 2020 16:29:43,127 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80426/CPDR-FFPE-ID-1641_2020-01-29_12-37-12.sky.zip into the system

11 May 2020 16:29:43,129 INFO : Starting import from CPDR-FFPE-ID-1641_2020-01-29_12-37-12.sky.zip

11 May 2020 16:29:43,133 INFO : Starting to import Skyline document from CPDR-FFPE-ID-1641_2020-01-29_12-37-12.sky.zip

11 May 2020 16:29:43,138 INFO : Expanding CPDR-FFPE-ID-1641.skyd

11 May 2020 16:29:43,232 INFO : Expanding CPDR-FFPE-ID-1641.sky.view

11 May 2020 16:29:43,232 INFO : Expanding CPDR-FFPE-ID-1641.sky

11 May 2020 16:29:43,237 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:29:43,238 INFO : 5% Done

11 May 2020 16:29:43,364 INFO : Inserting ANXA2

11 May 2020 16:29:43,367 INFO : 13% Done

11 May 2020 16:29:43,410 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:43,410 INFO : Inserting CAMKK2

11 May 2020 16:29:43,412 INFO : 20% Done

11 May 2020 16:29:43,453 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:43,453 INFO : Inserting CCND1

11 May 2020 16:29:43,454 INFO : 26% Done

11 May 2020 16:29:43,495 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:43,495 INFO : Inserting EGFR

11 May 2020 16:29:43,496 INFO : 31% Done

11 May 2020 16:29:43,530 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:43,530 INFO : Inserting ERG_pan

11 May 2020 16:29:43,532 INFO : 39% Done

11 May 2020 16:29:43,574 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:43,575 INFO : Inserting FOLH1

11 May 2020 16:29:43,576 INFO : 43% Done

11 May 2020 16:29:43,597 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:43,597 INFO : Inserting MMP9

11 May 2020 16:29:43,598 INFO : 49% Done

11 May 2020 16:29:43,641 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:43,641 INFO : Inserting MUC1

11 May 2020 16:29:43,642 INFO : 54% Done

11 May 2020 16:29:43,669 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:43,669 INFO : Inserting NCOA2

11 May 2020 16:29:43,670 INFO : 62% Done

11 May 2020 16:29:43,713 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:43,713 INFO : Inserting PSA

11 May 2020 16:29:43,715 INFO : 66% Done

11 May 2020 16:29:43,788 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:43,789 INFO : Inserting SMAD4

11 May 2020 16:29:43,790 INFO : 72% Done

11 May 2020 16:29:43,823 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:43,824 INFO : Inserting SPINK1

11 May 2020 16:29:43,825 INFO : 76% Done

11 May 2020 16:29:43,860 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:43,860 INFO : 78% Done

11 May 2020 16:29:43,860 INFO : Inserting SPRC

11 May 2020 16:29:43,861 INFO : 83% Done

11 May 2020 16:29:43,897 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:43,897 INFO : Inserting TFF3

11 May 2020 16:29:43,898 INFO : 88% Done

11 May 2020 16:29:43,932 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:43,933 INFO : 89% Done

11 May 2020 16:29:43,933 INFO : Inserting TGFB1

11 May 2020 16:29:43,934 INFO : 91% Done

11 May 2020 16:29:43,952 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:43,953 INFO : Inserting VEGFA

11 May 2020 16:29:43,954 INFO : 98% Done

11 May 2020 16:29:43,998 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:43,998 INFO : Done parsing Skyline document.

11 May 2020 16:29:43,999 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:29:44,012 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:29:44,041 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:29:44,052 INFO : Cleaning up temp tables

11 May 2020 16:29:44,055 INFO : Completed import of Skyline document from CPDR-FFPE-ID-1641_2020-01-29_12-37-12.sky.zip

11 May 2020 16:29:44,066 INFO : 100% Done

11 May 2020 16:29:44,072 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80426/CPDR-FFPE-ID-1641_2020-01-29_12-37-12.sky.zip into the system

11 May 2020 16:29:44,072 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80446/CPDR-FFPE-ID-1274_2020-01-29_12-44-50/CPDR-FFPE-ID-1274.skyd into the system

11 May 2020 16:29:44,073 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80446/CPDR-FFPE-ID-1274_2020-01-29_12-44-50/CPDR-FFPE-ID-1274.skyd into the system

11 May 2020 16:29:44,073 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80446/CPDR-FFPE-ID-1274_2020-01-29_12-44-50.sky.zip into the system

11 May 2020 16:29:44,075 INFO : Starting import from CPDR-FFPE-ID-1274_2020-01-29_12-44-50.sky.zip

11 May 2020 16:29:44,082 INFO : Starting to import Skyline document from CPDR-FFPE-ID-1274_2020-01-29_12-44-50.sky.zip

11 May 2020 16:29:44,087 INFO : Expanding CPDR-FFPE-ID-1274.skyd

11 May 2020 16:29:44,192 INFO : Expanding CPDR-FFPE-ID-1274.sky.view

11 May 2020 16:29:44,193 INFO : Expanding CPDR-FFPE-ID-1274.sky

11 May 2020 16:29:44,198 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:29:44,201 INFO : 5% Done

11 May 2020 16:29:44,379 INFO : Inserting ANXA2

11 May 2020 16:29:44,384 INFO : 13% Done

11 May 2020 16:29:44,498 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:44,499 INFO : Inserting CAMKK2

11 May 2020 16:29:44,500 INFO : 21% Done

11 May 2020 16:29:44,599 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:44,599 INFO : Inserting CCND1

11 May 2020 16:29:44,601 INFO : 26% Done

11 May 2020 16:29:44,674 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:44,674 INFO : Inserting EGFR

11 May 2020 16:29:44,675 INFO : 32% Done

11 May 2020 16:29:44,741 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:44,741 INFO : Inserting ERG_pan

11 May 2020 16:29:44,743 INFO : 41% Done

11 May 2020 16:29:44,831 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:44,831 INFO : Inserting FOLH1

11 May 2020 16:29:44,833 INFO : 44% Done

11 May 2020 16:29:44,877 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:44,877 INFO : Inserting MMP9

11 May 2020 16:29:44,878 INFO : 51% Done

11 May 2020 16:29:44,956 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:44,956 INFO : Inserting MUC1

11 May 2020 16:29:44,958 INFO : 56% Done

11 May 2020 16:29:45,018 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:45,018 INFO : Inserting NCOA2

11 May 2020 16:29:45,020 INFO : 63% Done

11 May 2020 16:29:45,100 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:45,101 INFO : Inserting PSA

11 May 2020 16:29:45,102 INFO : 68% Done

11 May 2020 16:29:45,154 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:45,154 INFO : Inserting SMAD4

11 May 2020 16:29:45,156 INFO : 74% Done

11 May 2020 16:29:45,225 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:45,225 INFO : Inserting SPINK1

11 May 2020 16:29:45,227 INFO : 78% Done

11 May 2020 16:29:45,285 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:45,285 INFO : Inserting SPRC

11 May 2020 16:29:45,286 INFO : 84% Done

11 May 2020 16:29:45,347 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:45,348 INFO : Inserting TFF3

11 May 2020 16:29:45,349 INFO : 89% Done

11 May 2020 16:29:45,397 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:45,397 INFO : Inserting TGFB1

11 May 2020 16:29:45,398 INFO : 91% Done

11 May 2020 16:29:45,422 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:45,422 INFO : Inserting VEGFA

11 May 2020 16:29:45,423 INFO : 98% Done

11 May 2020 16:29:45,525 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:45,525 INFO : Done parsing Skyline document.

11 May 2020 16:29:45,527 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:29:45,555 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:29:45,622 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:29:45,646 INFO : Cleaning up temp tables

11 May 2020 16:29:45,649 INFO : Completed import of Skyline document from CPDR-FFPE-ID-1274_2020-01-29_12-44-50.sky.zip

11 May 2020 16:29:45,656 INFO : 100% Done

11 May 2020 16:29:45,666 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80446/CPDR-FFPE-ID-1274_2020-01-29_12-44-50.sky.zip into the system

11 May 2020 16:29:45,666 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80447/CPDR-FFPE-ID-832_2020-01-29_12-45-03/CPDR-FFPE-ID-832.skyd into the system

11 May 2020 16:29:45,667 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80447/CPDR-FFPE-ID-832_2020-01-29_12-45-03/CPDR-FFPE-ID-832.skyd into the system

11 May 2020 16:29:45,667 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80447/CPDR-FFPE-ID-832_2020-01-29_12-45-03.sky.zip into the system

11 May 2020 16:29:45,669 INFO : Starting import from CPDR-FFPE-ID-832_2020-01-29_12-45-03.sky.zip

11 May 2020 16:29:45,675 INFO : Starting to import Skyline document from CPDR-FFPE-ID-832_2020-01-29_12-45-03.sky.zip

11 May 2020 16:29:45,678 INFO : Expanding CPDR-FFPE-ID-832.skyd

11 May 2020 16:29:45,793 INFO : Expanding CPDR-FFPE-ID-832.sky.view

11 May 2020 16:29:45,794 INFO : Expanding CPDR-FFPE-ID-832.sky

11 May 2020 16:29:45,799 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:29:45,801 INFO : 5% Done

11 May 2020 16:29:45,994 INFO : Inserting ANXA2

11 May 2020 16:29:45,999 INFO : 14% Done

11 May 2020 16:29:46,124 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:46,124 INFO : Inserting CAMKK2

11 May 2020 16:29:46,126 INFO : 20% Done

11 May 2020 16:29:46,239 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:46,239 INFO : 21% Done

11 May 2020 16:29:46,239 INFO : Inserting CCND1

11 May 2020 16:29:46,241 INFO : 27% Done

11 May 2020 16:29:46,332 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:46,332 INFO : Inserting EGFR

11 May 2020 16:29:46,333 INFO : 32% Done

11 May 2020 16:29:46,414 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:46,414 INFO : 33% Done

11 May 2020 16:29:46,414 INFO : Inserting ERG_pan

11 May 2020 16:29:46,415 INFO : 41% Done

11 May 2020 16:29:46,527 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:46,527 INFO : Inserting FOLH1

11 May 2020 16:29:46,528 INFO : 45% Done

11 May 2020 16:29:46,589 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:46,589 INFO : Inserting MMP9

11 May 2020 16:29:46,590 INFO : 54% Done

11 May 2020 16:29:46,696 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:46,697 INFO : Inserting MUC1

11 May 2020 16:29:46,698 INFO : 59% Done

11 May 2020 16:29:46,771 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:46,771 INFO : Inserting NCOA2

11 May 2020 16:29:46,773 INFO : 65% Done

11 May 2020 16:29:46,863 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:46,863 INFO : Inserting PSA

11 May 2020 16:29:46,864 INFO : 70% Done

11 May 2020 16:29:46,921 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:46,921 INFO : Inserting SMAD4

11 May 2020 16:29:46,923 INFO : 74% Done

11 May 2020 16:29:46,995 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:46,995 INFO : Inserting SPINK1

11 May 2020 16:29:46,996 INFO : 79% Done

11 May 2020 16:29:47,058 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:47,058 INFO : Inserting SPRC

11 May 2020 16:29:47,060 INFO : 85% Done

11 May 2020 16:29:47,122 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:47,123 INFO : Inserting TFF3

11 May 2020 16:29:47,124 INFO : 90% Done

11 May 2020 16:29:47,177 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:47,177 INFO : Inserting TGFB1

11 May 2020 16:29:47,178 INFO : 92% Done

11 May 2020 16:29:47,201 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:47,201 INFO : Inserting VEGFA

11 May 2020 16:29:47,202 INFO : 98% Done

11 May 2020 16:29:47,284 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:47,284 INFO : Done parsing Skyline document.

11 May 2020 16:29:47,285 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:29:47,310 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:29:47,376 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:29:47,401 INFO : Cleaning up temp tables

11 May 2020 16:29:47,715 INFO : Completed import of Skyline document from CPDR-FFPE-ID-832_2020-01-29_12-45-03.sky.zip

11 May 2020 16:29:47,716 INFO : 100% Done

11 May 2020 16:29:47,724 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80447/CPDR-FFPE-ID-832_2020-01-29_12-45-03.sky.zip into the system

11 May 2020 16:29:47,724 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80450/CPDR-FFPE-ID-1544_2020-01-29_12-45-45/CPDR-FFPE-ID-1544.skyd into the system

11 May 2020 16:29:47,725 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80450/CPDR-FFPE-ID-1544_2020-01-29_12-45-45/CPDR-FFPE-ID-1544.skyd into the system

11 May 2020 16:29:47,725 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80450/CPDR-FFPE-ID-1544_2020-01-29_12-45-45.sky.zip into the system

11 May 2020 16:29:47,727 INFO : Starting import from CPDR-FFPE-ID-1544_2020-01-29_12-45-45.sky.zip

11 May 2020 16:29:47,732 INFO : Starting to import Skyline document from CPDR-FFPE-ID-1544_2020-01-29_12-45-45.sky.zip

11 May 2020 16:29:47,735 INFO : Expanding CPDR-FFPE-ID-1544.skyd

11 May 2020 16:29:47,837 INFO : Expanding CPDR-FFPE-ID-1544.sky.view

11 May 2020 16:29:47,837 INFO : Expanding CPDR-FFPE-ID-1544.sky

11 May 2020 16:29:47,842 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:29:47,844 INFO : 5% Done

11 May 2020 16:29:47,987 INFO : Inserting ANXA2

11 May 2020 16:29:47,992 INFO : 14% Done

11 May 2020 16:29:48,080 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:48,080 INFO : Inserting CAMKK2

11 May 2020 16:29:48,081 INFO : 21% Done

11 May 2020 16:29:48,173 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:48,173 INFO : Inserting CCND1

11 May 2020 16:29:48,175 INFO : 27% Done

11 May 2020 16:29:48,262 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:48,262 INFO : Inserting EGFR

11 May 2020 16:29:48,264 INFO : 33% Done

11 May 2020 16:29:48,340 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:48,340 INFO : Inserting ERG_pan

11 May 2020 16:29:48,342 INFO : 41% Done

11 May 2020 16:29:48,438 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:48,438 INFO : Inserting FOLH1

11 May 2020 16:29:48,439 INFO : 45% Done

11 May 2020 16:29:48,489 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:48,489 INFO : Inserting MMP9

11 May 2020 16:29:48,490 INFO : 54% Done

11 May 2020 16:29:48,587 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:48,587 INFO : Inserting MUC1

11 May 2020 16:29:48,588 INFO : 59% Done

11 May 2020 16:29:48,657 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:48,657 INFO : Inserting NCOA2

11 May 2020 16:29:48,658 INFO : 66% Done

11 May 2020 16:29:48,730 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:48,730 INFO : Inserting PSA

11 May 2020 16:29:48,731 INFO : 71% Done

11 May 2020 16:29:48,779 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:48,779 INFO : Inserting SMAD4

11 May 2020 16:29:48,780 INFO : 75% Done

11 May 2020 16:29:48,835 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:48,835 INFO : Inserting SPINK1

11 May 2020 16:29:48,836 INFO : 80% Done

11 May 2020 16:29:48,910 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:48,911 INFO : Inserting SPRC

11 May 2020 16:29:48,912 INFO : 84% Done

11 May 2020 16:29:48,961 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:48,962 INFO : 85% Done

11 May 2020 16:29:48,962 INFO : Inserting TFF3

11 May 2020 16:29:48,963 INFO : 90% Done

11 May 2020 16:29:49,011 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:49,011 INFO : Inserting TGFB1

11 May 2020 16:29:49,012 INFO : 91% Done

11 May 2020 16:29:49,037 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:49,037 INFO : Inserting VEGFA

11 May 2020 16:29:49,038 INFO : 98% Done

11 May 2020 16:29:49,130 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:49,130 INFO : Done parsing Skyline document.

11 May 2020 16:29:49,131 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:29:49,159 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:29:49,228 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:29:49,253 INFO : Cleaning up temp tables

11 May 2020 16:29:49,667 INFO : Completed import of Skyline document from CPDR-FFPE-ID-1544_2020-01-29_12-45-45.sky.zip

11 May 2020 16:29:49,668 INFO : 100% Done

11 May 2020 16:29:49,678 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80450/CPDR-FFPE-ID-1544_2020-01-29_12-45-45.sky.zip into the system

11 May 2020 16:29:49,679 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80384/CPDR-FFPE-ID-736_2020-01-29_12-22-25/CPDR-FFPE-ID-736.skyd into the system

11 May 2020 16:29:49,679 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80384/CPDR-FFPE-ID-736_2020-01-29_12-22-25/CPDR-FFPE-ID-736.skyd into the system

11 May 2020 16:29:49,679 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80384/CPDR-FFPE-ID-736_2020-01-29_12-22-25.sky.zip into the system

11 May 2020 16:29:49,682 INFO : Starting import from CPDR-FFPE-ID-736_2020-01-29_12-22-25.sky.zip

11 May 2020 16:29:49,687 INFO : Starting to import Skyline document from CPDR-FFPE-ID-736_2020-01-29_12-22-25.sky.zip

11 May 2020 16:29:49,691 INFO : Expanding CPDR-FFPE-ID-736.skyd

11 May 2020 16:29:49,815 INFO : Expanding CPDR-FFPE-ID-736.sky.view

11 May 2020 16:29:49,816 INFO : Expanding CPDR-FFPE-ID-736.sky

11 May 2020 16:29:49,822 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:29:49,824 INFO : 5% Done

11 May 2020 16:29:50,037 INFO : Inserting ANXA2

11 May 2020 16:29:50,042 INFO : 14% Done

11 May 2020 16:29:50,160 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:50,160 INFO : Inserting CAMKK2

11 May 2020 16:29:50,162 INFO : 21% Done

11 May 2020 16:29:50,276 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:50,276 INFO : Inserting CCND1

11 May 2020 16:29:50,278 INFO : 28% Done

11 May 2020 16:29:50,403 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:50,403 INFO : 29% Done

11 May 2020 16:29:50,403 INFO : Inserting EGFR

11 May 2020 16:29:50,404 INFO : 32% Done

11 May 2020 16:29:50,474 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:50,474 INFO : Inserting ERG_pan

11 May 2020 16:29:50,476 INFO : 39% Done

11 May 2020 16:29:50,571 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:50,571 INFO : Inserting FOLH1

11 May 2020 16:29:50,573 INFO : 41% Done

11 May 2020 16:29:50,620 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:50,620 INFO : Inserting MMP9

11 May 2020 16:29:50,622 INFO : 47% Done

11 May 2020 16:29:50,719 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:50,719 INFO : Inserting MUC1

11 May 2020 16:29:50,720 INFO : 52% Done

11 May 2020 16:29:50,787 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:50,787 INFO : Inserting NCOA2

11 May 2020 16:29:50,789 INFO : 59% Done

11 May 2020 16:29:50,901 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:50,901 INFO : Inserting PSA

11 May 2020 16:29:50,903 INFO : 65% Done

11 May 2020 16:29:50,991 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:50,991 INFO : Inserting SMAD4

11 May 2020 16:29:50,993 INFO : 71% Done

11 May 2020 16:29:51,086 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:51,087 INFO : Inserting SPINK1

11 May 2020 16:29:51,088 INFO : 76% Done

11 May 2020 16:29:51,194 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:51,194 INFO : Inserting SPRC

11 May 2020 16:29:51,196 INFO : 83% Done

11 May 2020 16:29:51,303 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:51,303 INFO : Inserting TFF3

11 May 2020 16:29:51,305 INFO : 89% Done

11 May 2020 16:29:51,399 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:51,399 INFO : Inserting TGFB1

11 May 2020 16:29:51,400 INFO : 90% Done

11 May 2020 16:29:51,432 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:51,433 INFO : Inserting VEGFA

11 May 2020 16:29:51,434 INFO : 98% Done

11 May 2020 16:29:51,535 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:51,535 INFO : Done parsing Skyline document.

11 May 2020 16:29:51,536 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:29:51,551 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:29:51,591 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:29:51,606 INFO : Cleaning up temp tables

11 May 2020 16:29:51,888 INFO : Completed import of Skyline document from CPDR-FFPE-ID-736_2020-01-29_12-22-25.sky.zip

11 May 2020 16:29:51,889 INFO : 100% Done

11 May 2020 16:29:51,894 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80384/CPDR-FFPE-ID-736_2020-01-29_12-22-25.sky.zip into the system

11 May 2020 16:29:51,894 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80385/CPDR-FFPE-ID-1145_2020-01-29_12-22-42/CPDR-FFPE-ID-1145.skyd into the system

11 May 2020 16:29:51,895 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80385/CPDR-FFPE-ID-1145_2020-01-29_12-22-42/CPDR-FFPE-ID-1145.skyd into the system

11 May 2020 16:29:51,895 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80385/CPDR-FFPE-ID-1145_2020-01-29_12-22-42.sky.zip into the system

11 May 2020 16:29:51,897 INFO : Starting import from CPDR-FFPE-ID-1145_2020-01-29_12-22-42.sky.zip

11 May 2020 16:29:51,900 INFO : Starting to import Skyline document from CPDR-FFPE-ID-1145_2020-01-29_12-22-42.sky.zip

11 May 2020 16:29:51,904 INFO : Expanding CPDR-FFPE-ID-1145.skyd

11 May 2020 16:29:51,998 INFO : Expanding CPDR-FFPE-ID-1145.sky.view

11 May 2020 16:29:51,998 INFO : Expanding CPDR-FFPE-ID-1145.sky

11 May 2020 16:29:52,002 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:29:52,003 INFO : 5% Done

11 May 2020 16:29:52,080 INFO : Inserting ANXA2

11 May 2020 16:29:52,083 INFO : 13% Done

11 May 2020 16:29:52,124 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:52,124 INFO : 14% Done

11 May 2020 16:29:52,124 INFO : Inserting CAMKK2

11 May 2020 16:29:52,125 INFO : 20% Done

11 May 2020 16:29:52,165 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:52,165 INFO : Inserting CCND1

11 May 2020 16:29:52,166 INFO : 25% Done

11 May 2020 16:29:52,199 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:52,199 INFO : Inserting EGFR

11 May 2020 16:29:52,200 INFO : 32% Done

11 May 2020 16:29:52,237 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:52,238 INFO : Inserting ERG_pan

11 May 2020 16:29:52,239 INFO : 40% Done

11 May 2020 16:29:52,283 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:52,283 INFO : Inserting FOLH1

11 May 2020 16:29:52,284 INFO : 44% Done

11 May 2020 16:29:52,308 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:52,308 INFO : Inserting MMP9

11 May 2020 16:29:52,309 INFO : 53% Done

11 May 2020 16:29:52,354 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:52,354 INFO : Inserting MUC1

11 May 2020 16:29:52,355 INFO : 58% Done

11 May 2020 16:29:52,398 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:52,398 INFO : Inserting NCOA2

11 May 2020 16:29:52,400 INFO : 64% Done

11 May 2020 16:29:52,442 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:52,443 INFO : Inserting PSA

11 May 2020 16:29:52,443 INFO : 69% Done

11 May 2020 16:29:52,470 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:52,470 INFO : Inserting SMAD4

11 May 2020 16:29:52,471 INFO : 74% Done

11 May 2020 16:29:52,503 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:52,503 INFO : Inserting SPINK1

11 May 2020 16:29:52,504 INFO : 78% Done

11 May 2020 16:29:52,552 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:52,552 INFO : Inserting SPRC

11 May 2020 16:29:52,553 INFO : 83% Done

11 May 2020 16:29:52,609 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:52,609 INFO : Inserting TFF3

11 May 2020 16:29:52,611 INFO : 89% Done

11 May 2020 16:29:52,665 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:52,666 INFO : Inserting TGFB1

11 May 2020 16:29:52,667 INFO : 91% Done

11 May 2020 16:29:52,686 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:52,686 INFO : Inserting VEGFA

11 May 2020 16:29:52,687 INFO : 98% Done

11 May 2020 16:29:52,781 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:52,781 INFO : Done parsing Skyline document.

11 May 2020 16:29:52,782 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:29:52,809 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:29:52,870 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:29:52,893 INFO : Cleaning up temp tables

11 May 2020 16:29:53,241 INFO : Completed import of Skyline document from CPDR-FFPE-ID-1145_2020-01-29_12-22-42.sky.zip

11 May 2020 16:29:53,243 INFO : 100% Done

11 May 2020 16:29:53,252 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80385/CPDR-FFPE-ID-1145_2020-01-29_12-22-42.sky.zip into the system

11 May 2020 16:29:53,253 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80386/CPDR-FFPE-ID-651_2020-01-29_12-22-55/CPDR-FFPE-ID-651.skyd into the system

11 May 2020 16:29:53,253 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80386/CPDR-FFPE-ID-651_2020-01-29_12-22-55/CPDR-FFPE-ID-651.skyd into the system

11 May 2020 16:29:53,253 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80386/CPDR-FFPE-ID-651_2020-01-29_12-22-55.sky.zip into the system

11 May 2020 16:29:53,257 INFO : Starting import from CPDR-FFPE-ID-651_2020-01-29_12-22-55.sky.zip

11 May 2020 16:29:53,263 INFO : Starting to import Skyline document from CPDR-FFPE-ID-651_2020-01-29_12-22-55.sky.zip

11 May 2020 16:29:53,268 INFO : Expanding CPDR-FFPE-ID-651.skyd

11 May 2020 16:29:53,353 INFO : Expanding CPDR-FFPE-ID-651.sky.view

11 May 2020 16:29:53,353 INFO : Expanding CPDR-FFPE-ID-651.sky

11 May 2020 16:29:53,358 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:29:53,360 INFO : 5% Done

11 May 2020 16:29:53,552 INFO : Inserting ANXA2

11 May 2020 16:29:53,557 INFO : 14% Done

11 May 2020 16:29:53,650 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:53,650 INFO : Inserting CAMKK2

11 May 2020 16:29:53,651 INFO : 21% Done

11 May 2020 16:29:53,737 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:53,737 INFO : Inserting CCND1

11 May 2020 16:29:53,739 INFO : 25% Done

11 May 2020 16:29:53,805 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:53,805 INFO : Inserting EGFR

11 May 2020 16:29:53,807 INFO : 32% Done

11 May 2020 16:29:53,873 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:53,873 INFO : Inserting ERG_pan

11 May 2020 16:29:53,875 INFO : 41% Done

11 May 2020 16:29:53,973 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:53,973 INFO : Inserting FOLH1

11 May 2020 16:29:53,974 INFO : 46% Done

11 May 2020 16:29:54,021 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:54,021 INFO : Inserting MMP9

11 May 2020 16:29:54,022 INFO : 53% Done

11 May 2020 16:29:54,111 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:54,112 INFO : Inserting MUC1

11 May 2020 16:29:54,113 INFO : 59% Done

11 May 2020 16:29:54,174 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:54,174 INFO : Inserting NCOA2

11 May 2020 16:29:54,175 INFO : 66% Done

11 May 2020 16:29:54,245 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:54,245 INFO : Inserting PSA

11 May 2020 16:29:54,246 INFO : 71% Done

11 May 2020 16:29:54,299 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:54,299 INFO : Inserting SMAD4

11 May 2020 16:29:54,300 INFO : 75% Done

11 May 2020 16:29:54,368 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:54,369 INFO : Inserting SPINK1

11 May 2020 16:29:54,370 INFO : 80% Done

11 May 2020 16:29:54,422 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:54,422 INFO : Inserting SPRC

11 May 2020 16:29:54,423 INFO : 84% Done

11 May 2020 16:29:54,469 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:54,469 INFO : Inserting TFF3

11 May 2020 16:29:54,470 INFO : 90% Done

11 May 2020 16:29:54,523 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:54,523 INFO : Inserting TGFB1

11 May 2020 16:29:54,524 INFO : 91% Done

11 May 2020 16:29:54,544 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:54,544 INFO : Inserting VEGFA

11 May 2020 16:29:54,545 INFO : 98% Done

11 May 2020 16:29:54,632 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:54,632 INFO : Done parsing Skyline document.

11 May 2020 16:29:54,633 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:29:54,661 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:29:54,723 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:29:54,765 INFO : Cleaning up temp tables

11 May 2020 16:29:55,120 INFO : Completed import of Skyline document from CPDR-FFPE-ID-651_2020-01-29_12-22-55.sky.zip

11 May 2020 16:29:55,122 INFO : 100% Done

11 May 2020 16:29:55,132 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80386/CPDR-FFPE-ID-651_2020-01-29_12-22-55.sky.zip into the system

11 May 2020 16:29:55,132 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80402/CPDR-FFPE-ID-656_2020-01-29_12-30-34/CPDR-FFPE-ID-656.skyd into the system

11 May 2020 16:29:55,134 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80402/CPDR-FFPE-ID-656_2020-01-29_12-30-34/CPDR-FFPE-ID-656.skyd into the system

11 May 2020 16:29:55,134 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80402/CPDR-FFPE-ID-656_2020-01-29_12-30-34.sky.zip into the system

11 May 2020 16:29:55,138 INFO : Starting import from CPDR-FFPE-ID-656_2020-01-29_12-30-34.sky.zip

11 May 2020 16:29:55,145 INFO : Starting to import Skyline document from CPDR-FFPE-ID-656_2020-01-29_12-30-34.sky.zip

11 May 2020 16:29:55,155 INFO : Expanding CPDR-FFPE-ID-656.skyd

11 May 2020 16:29:55,416 INFO : Expanding CPDR-FFPE-ID-656.sky.view

11 May 2020 16:29:55,416 INFO : Expanding CPDR-FFPE-ID-656.sky

11 May 2020 16:29:55,425 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:29:55,428 INFO : 5% Done

11 May 2020 16:29:55,674 INFO : Inserting ANXA2

11 May 2020 16:29:55,683 INFO : 14% Done

11 May 2020 16:29:55,823 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:55,823 INFO : Inserting CAMKK2

11 May 2020 16:29:55,826 INFO : 21% Done

11 May 2020 16:29:55,937 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:55,938 INFO : Inserting CCND1

11 May 2020 16:29:55,941 INFO : 27% Done

11 May 2020 16:29:56,060 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:56,060 INFO : Inserting EGFR

11 May 2020 16:29:56,063 INFO : 32% Done

11 May 2020 16:29:56,162 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:56,162 INFO : Inserting ERG_pan

11 May 2020 16:29:56,164 INFO : 39% Done

11 May 2020 16:29:56,268 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:56,268 INFO : Inserting FOLH1

11 May 2020 16:29:56,271 INFO : 43% Done

11 May 2020 16:29:56,325 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:56,325 INFO : Inserting MMP9

11 May 2020 16:29:56,328 INFO : 49% Done

11 May 2020 16:29:56,431 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:56,431 INFO : Inserting MUC1

11 May 2020 16:29:56,433 INFO : 54% Done

11 May 2020 16:29:56,494 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:56,494 INFO : Inserting NCOA2

11 May 2020 16:29:56,497 INFO : 62% Done

11 May 2020 16:29:56,620 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:56,620 INFO : Inserting PSA

11 May 2020 16:29:56,622 INFO : 67% Done

11 May 2020 16:29:56,709 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:56,709 INFO : Inserting SMAD4

11 May 2020 16:29:56,711 INFO : 73% Done

11 May 2020 16:29:56,797 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:56,797 INFO : Inserting SPINK1

11 May 2020 16:29:56,800 INFO : 78% Done

11 May 2020 16:29:56,886 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:56,886 INFO : Inserting SPRC

11 May 2020 16:29:56,888 INFO : 83% Done

11 May 2020 16:29:56,965 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:56,965 INFO : Inserting TFF3

11 May 2020 16:29:56,968 INFO : 88% Done

11 May 2020 16:29:57,061 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:57,061 INFO : Inserting TGFB1

11 May 2020 16:29:57,063 INFO : 90% Done

11 May 2020 16:29:57,099 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:57,099 INFO : Inserting VEGFA

11 May 2020 16:29:57,102 INFO : 98% Done

11 May 2020 16:29:57,218 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:57,218 INFO : Done parsing Skyline document.

11 May 2020 16:29:57,220 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:29:57,250 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:29:57,330 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:29:57,360 INFO : Cleaning up temp tables

11 May 2020 16:29:58,079 INFO : Completed import of Skyline document from CPDR-FFPE-ID-656_2020-01-29_12-30-34.sky.zip

11 May 2020 16:29:58,081 INFO : 100% Done

11 May 2020 16:29:58,133 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80402/CPDR-FFPE-ID-656_2020-01-29_12-30-34.sky.zip into the system

11 May 2020 16:29:58,134 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80407/CPDR-FFPE-ID-1103_2020-01-29_12-32-17/CPDR-FFPE-ID-1103.skyd into the system

11 May 2020 16:29:58,135 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80407/CPDR-FFPE-ID-1103_2020-01-29_12-32-17/CPDR-FFPE-ID-1103.skyd into the system

11 May 2020 16:29:58,135 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80407/CPDR-FFPE-ID-1103_2020-01-29_12-32-17.sky.zip into the system

11 May 2020 16:29:58,139 INFO : Starting import from CPDR-FFPE-ID-1103_2020-01-29_12-32-17.sky.zip

11 May 2020 16:29:58,145 INFO : Starting to import Skyline document from CPDR-FFPE-ID-1103_2020-01-29_12-32-17.sky.zip

11 May 2020 16:29:58,158 INFO : Expanding CPDR-FFPE-ID-1103.skyd

11 May 2020 16:29:58,436 INFO : Expanding CPDR-FFPE-ID-1103.sky.view

11 May 2020 16:29:58,437 INFO : Expanding CPDR-FFPE-ID-1103.sky

11 May 2020 16:29:58,446 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:29:58,449 INFO : 5% Done

11 May 2020 16:29:58,703 INFO : Inserting ANXA2

11 May 2020 16:29:58,711 INFO : 14% Done

11 May 2020 16:29:58,828 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:58,829 INFO : Inserting CAMKK2

11 May 2020 16:29:58,831 INFO : 21% Done

11 May 2020 16:29:58,946 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:58,946 INFO : 22% Done

11 May 2020 16:29:58,947 INFO : Inserting CCND1

11 May 2020 16:29:58,949 INFO : 28% Done

11 May 2020 16:29:59,083 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:59,083 INFO : Inserting EGFR

11 May 2020 16:29:59,086 INFO : 33% Done

11 May 2020 16:29:59,201 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:59,201 INFO : Inserting ERG_pan

11 May 2020 16:29:59,204 INFO : 38% Done

11 May 2020 16:29:59,340 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:59,340 INFO : Inserting FOLH1

11 May 2020 16:29:59,343 INFO : 41% Done

11 May 2020 16:29:59,406 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:59,407 INFO : Inserting MMP9

11 May 2020 16:29:59,410 INFO : 48% Done

11 May 2020 16:29:59,550 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:59,550 INFO : 49% Done

11 May 2020 16:29:59,550 INFO : Inserting MUC1

11 May 2020 16:29:59,553 INFO : 52% Done

11 May 2020 16:29:59,633 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:59,633 INFO : Inserting NCOA2

11 May 2020 16:29:59,638 INFO : 60% Done

11 May 2020 16:29:59,774 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:59,775 INFO : Inserting PSA

11 May 2020 16:29:59,777 INFO : 66% Done

11 May 2020 16:29:59,885 DEBUG: Total peptides inserted: 1

11 May 2020 16:29:59,885 INFO : Inserting SMAD4

11 May 2020 16:29:59,888 INFO : 71% Done

11 May 2020 16:30:00,003 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:00,003 INFO : Inserting SPINK1

11 May 2020 16:30:00,006 INFO : 76% Done

11 May 2020 16:30:00,132 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:00,132 INFO : 77% Done

11 May 2020 16:30:00,133 INFO : Inserting SPRC

11 May 2020 16:30:00,136 INFO : 82% Done

11 May 2020 16:30:00,257 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:00,257 INFO : Inserting TFF3

11 May 2020 16:30:00,260 INFO : 88% Done

11 May 2020 16:30:00,374 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:00,374 INFO : Inserting TGFB1

11 May 2020 16:30:00,377 INFO : 91% Done

11 May 2020 16:30:00,454 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:00,455 INFO : Inserting VEGFA

11 May 2020 16:30:00,459 INFO : 98% Done

11 May 2020 16:30:00,628 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:00,628 INFO : Done parsing Skyline document.

11 May 2020 16:30:00,631 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:30:00,666 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:30:00,774 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:30:00,815 INFO : Cleaning up temp tables

11 May 2020 16:30:01,121 INFO : Completed import of Skyline document from CPDR-FFPE-ID-1103_2020-01-29_12-32-17.sky.zip

11 May 2020 16:30:01,122 INFO : 100% Done

11 May 2020 16:30:01,128 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80407/CPDR-FFPE-ID-1103_2020-01-29_12-32-17.sky.zip into the system

11 May 2020 16:30:01,128 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80422/CPDR-FFPE-ID-1147_2020-01-29_12-35-59/CPDR-FFPE-ID-1147.skyd into the system

11 May 2020 16:30:01,129 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80422/CPDR-FFPE-ID-1147_2020-01-29_12-35-59/CPDR-FFPE-ID-1147.skyd into the system

11 May 2020 16:30:01,129 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80422/CPDR-FFPE-ID-1147_2020-01-29_12-35-59.sky.zip into the system

11 May 2020 16:30:01,130 INFO : Starting import from CPDR-FFPE-ID-1147_2020-01-29_12-35-59.sky.zip

11 May 2020 16:30:01,133 INFO : Starting to import Skyline document from CPDR-FFPE-ID-1147_2020-01-29_12-35-59.sky.zip

11 May 2020 16:30:01,144 INFO : Expanding CPDR-FFPE-ID-1147.skyd

11 May 2020 16:30:01,402 INFO : Expanding CPDR-FFPE-ID-1147.sky.view

11 May 2020 16:30:01,403 INFO : Expanding CPDR-FFPE-ID-1147.sky

11 May 2020 16:30:01,409 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:30:01,411 INFO : 5% Done

11 May 2020 16:30:01,810 INFO : Inserting ANXA2

11 May 2020 16:30:01,819 INFO : 13% Done

11 May 2020 16:30:02,066 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:02,066 INFO : Inserting CAMKK2

11 May 2020 16:30:02,071 INFO : 21% Done

11 May 2020 16:30:02,345 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:02,345 INFO : Inserting CCND1

11 May 2020 16:30:02,349 INFO : 26% Done

11 May 2020 16:30:02,552 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:02,552 INFO : Inserting EGFR

11 May 2020 16:30:02,557 INFO : 33% Done

11 May 2020 16:30:02,772 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:02,772 INFO : Inserting ERG_pan

11 May 2020 16:30:02,777 INFO : 41% Done

11 May 2020 16:30:03,051 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:03,051 INFO : Inserting FOLH1

11 May 2020 16:30:03,054 INFO : 44% Done

11 May 2020 16:30:03,165 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:03,165 INFO : Inserting MMP9

11 May 2020 16:30:03,170 INFO : 52% Done

11 May 2020 16:30:03,445 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:03,446 INFO : Inserting MUC1

11 May 2020 16:30:03,449 INFO : 57% Done

11 May 2020 16:30:03,643 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:03,643 INFO : Inserting NCOA2

11 May 2020 16:30:03,648 INFO : 65% Done

11 May 2020 16:30:03,942 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:03,942 INFO : Inserting PSA

11 May 2020 16:30:03,945 INFO : 69% Done

11 May 2020 16:30:04,080 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:04,080 INFO : Inserting SMAD4

11 May 2020 16:30:04,084 INFO : 74% Done

11 May 2020 16:30:04,267 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:04,267 INFO : Inserting SPINK1

11 May 2020 16:30:04,270 INFO : 79% Done

11 May 2020 16:30:04,422 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:04,422 INFO : Inserting SPRC

11 May 2020 16:30:04,425 INFO : 84% Done

11 May 2020 16:30:04,652 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:04,652 INFO : Inserting TFF3

11 May 2020 16:30:04,657 INFO : 88% Done

11 May 2020 16:30:04,828 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:04,828 INFO : Inserting TGFB1

11 May 2020 16:30:04,831 INFO : 90% Done

11 May 2020 16:30:04,906 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:04,906 INFO : Inserting VEGFA

11 May 2020 16:30:04,911 INFO : 98% Done

11 May 2020 16:30:05,131 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:05,132 INFO : Done parsing Skyline document.

11 May 2020 16:30:05,134 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:30:05,168 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:30:05,364 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:30:05,474 INFO : Cleaning up temp tables

11 May 2020 16:30:05,738 INFO : Completed import of Skyline document from CPDR-FFPE-ID-1147_2020-01-29_12-35-59.sky.zip

11 May 2020 16:30:05,739 INFO : 100% Done

11 May 2020 16:30:05,745 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80422/CPDR-FFPE-ID-1147_2020-01-29_12-35-59.sky.zip into the system

11 May 2020 16:30:05,745 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80424/CPDR-FFPE-ID-1137_2020-01-29_12-36-39/CPDR-FFPE-ID-1137.skyd into the system

11 May 2020 16:30:05,746 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80424/CPDR-FFPE-ID-1137_2020-01-29_12-36-39/CPDR-FFPE-ID-1137.skyd into the system

11 May 2020 16:30:05,746 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80424/CPDR-FFPE-ID-1137_2020-01-29_12-36-39.sky.zip into the system

11 May 2020 16:30:05,748 INFO : Starting import from CPDR-FFPE-ID-1137_2020-01-29_12-36-39.sky.zip

11 May 2020 16:30:05,751 INFO : Starting to import Skyline document from CPDR-FFPE-ID-1137_2020-01-29_12-36-39.sky.zip

11 May 2020 16:30:05,755 INFO : Expanding CPDR-FFPE-ID-1137.skyd

11 May 2020 16:30:05,865 INFO : Expanding CPDR-FFPE-ID-1137.sky.view

11 May 2020 16:30:05,866 INFO : Expanding CPDR-FFPE-ID-1137.sky

11 May 2020 16:30:05,870 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:30:05,872 INFO : 6% Done

11 May 2020 16:30:05,999 INFO : Inserting ANXA2

11 May 2020 16:30:06,002 INFO : 14% Done

11 May 2020 16:30:06,112 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:06,112 INFO : Inserting CAMKK2

11 May 2020 16:30:06,116 INFO : 21% Done

11 May 2020 16:30:06,233 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:06,233 INFO : Inserting CCND1

11 May 2020 16:30:06,236 INFO : 26% Done

11 May 2020 16:30:06,328 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:06,328 INFO : Inserting EGFR

11 May 2020 16:30:06,332 INFO : 33% Done

11 May 2020 16:30:06,436 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:06,437 INFO : Inserting ERG_pan

11 May 2020 16:30:06,440 INFO : 40% Done

11 May 2020 16:30:06,550 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:06,550 INFO : Inserting FOLH1

11 May 2020 16:30:06,553 INFO : 43% Done

11 May 2020 16:30:06,610 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:06,610 INFO : Inserting MMP9

11 May 2020 16:30:06,614 INFO : 52% Done

11 May 2020 16:30:06,754 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:06,755 INFO : Inserting MUC1

11 May 2020 16:30:06,758 INFO : 59% Done

11 May 2020 16:30:06,856 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:06,856 INFO : Inserting NCOA2

11 May 2020 16:30:06,859 INFO : 66% Done

11 May 2020 16:30:06,962 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:06,962 INFO : Inserting PSA

11 May 2020 16:30:06,965 INFO : 69% Done

11 May 2020 16:30:07,023 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:07,023 INFO : Inserting SMAD4

11 May 2020 16:30:07,027 INFO : 74% Done

11 May 2020 16:30:07,111 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:07,112 INFO : Inserting SPINK1

11 May 2020 16:30:07,114 INFO : 79% Done

11 May 2020 16:30:07,241 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:07,241 INFO : Inserting SPRC

11 May 2020 16:30:07,243 INFO : 84% Done

11 May 2020 16:30:07,327 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:07,327 INFO : Inserting TFF3

11 May 2020 16:30:07,330 INFO : 88% Done

11 May 2020 16:30:07,396 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:07,396 INFO : Inserting TGFB1

11 May 2020 16:30:07,398 INFO : 91% Done

11 May 2020 16:30:07,434 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:07,434 INFO : Inserting VEGFA

11 May 2020 16:30:07,438 INFO : 98% Done

11 May 2020 16:30:07,555 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:07,556 INFO : Done parsing Skyline document.

11 May 2020 16:30:07,558 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:30:07,588 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:30:07,661 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:30:07,689 INFO : Cleaning up temp tables

11 May 2020 16:30:08,040 INFO : Completed import of Skyline document from CPDR-FFPE-ID-1137_2020-01-29_12-36-39.sky.zip

11 May 2020 16:30:08,042 INFO : 100% Done

11 May 2020 16:30:08,054 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80424/CPDR-FFPE-ID-1137_2020-01-29_12-36-39.sky.zip into the system

11 May 2020 16:30:08,054 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80425/CPDR-FFPE-ID-1552_2020-01-29_12-36-56/CPDR-FFPE-ID-1552.skyd into the system

11 May 2020 16:30:08,055 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80425/CPDR-FFPE-ID-1552_2020-01-29_12-36-56/CPDR-FFPE-ID-1552.skyd into the system

11 May 2020 16:30:08,055 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80425/CPDR-FFPE-ID-1552_2020-01-29_12-36-56.sky.zip into the system

11 May 2020 16:30:08,059 INFO : Starting import from CPDR-FFPE-ID-1552_2020-01-29_12-36-56.sky.zip

11 May 2020 16:30:08,066 INFO : Starting to import Skyline document from CPDR-FFPE-ID-1552_2020-01-29_12-36-56.sky.zip

11 May 2020 16:30:08,074 INFO : Expanding CPDR-FFPE-ID-1552.skyd

11 May 2020 16:30:08,365 INFO : Expanding CPDR-FFPE-ID-1552.sky.view

11 May 2020 16:30:08,366 INFO : Expanding CPDR-FFPE-ID-1552.sky

11 May 2020 16:30:08,378 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:30:08,382 INFO : 5% Done

11 May 2020 16:30:08,787 INFO : Inserting ANXA2

11 May 2020 16:30:08,800 INFO : 14% Done

11 May 2020 16:30:08,924 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:08,924 INFO : Inserting CAMKK2

11 May 2020 16:30:08,927 INFO : 22% Done

11 May 2020 16:30:09,050 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:09,050 INFO : Inserting CCND1

11 May 2020 16:30:09,053 INFO : 27% Done

11 May 2020 16:30:09,153 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:09,153 INFO : Inserting EGFR

11 May 2020 16:30:09,155 INFO : 33% Done

11 May 2020 16:30:09,243 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:09,243 INFO : Inserting ERG_pan

11 May 2020 16:30:09,246 INFO : 41% Done

11 May 2020 16:30:09,360 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:09,361 INFO : Inserting FOLH1

11 May 2020 16:30:09,363 INFO : 45% Done

11 May 2020 16:30:09,421 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:09,421 INFO : Inserting MMP9

11 May 2020 16:30:09,424 INFO : 53% Done

11 May 2020 16:30:09,550 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:09,550 INFO : Inserting MUC1

11 May 2020 16:30:09,552 INFO : 56% Done

11 May 2020 16:30:09,615 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:09,615 INFO : Inserting NCOA2

11 May 2020 16:30:09,617 INFO : 63% Done

11 May 2020 16:30:09,718 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:09,718 INFO : Inserting PSA

11 May 2020 16:30:09,721 INFO : 68% Done

11 May 2020 16:30:09,790 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:09,791 INFO : Inserting SMAD4

11 May 2020 16:30:09,793 INFO : 74% Done

11 May 2020 16:30:09,893 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:09,893 INFO : Inserting SPINK1

11 May 2020 16:30:09,897 INFO : 79% Done

11 May 2020 16:30:09,983 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:09,984 INFO : Inserting SPRC

11 May 2020 16:30:09,987 INFO : 83% Done

11 May 2020 16:30:10,071 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:10,072 INFO : Inserting TFF3

11 May 2020 16:30:10,074 INFO : 89% Done

11 May 2020 16:30:10,138 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:10,138 INFO : Inserting TGFB1

11 May 2020 16:30:10,140 INFO : 90% Done

11 May 2020 16:30:10,172 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:10,172 INFO : 91% Done

11 May 2020 16:30:10,172 INFO : Inserting VEGFA

11 May 2020 16:30:10,175 INFO : 98% Done

11 May 2020 16:30:10,307 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:10,308 INFO : Done parsing Skyline document.

11 May 2020 16:30:10,310 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:30:10,339 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:30:10,449 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:30:10,475 INFO : Cleaning up temp tables

11 May 2020 16:30:10,898 INFO : Completed import of Skyline document from CPDR-FFPE-ID-1552_2020-01-29_12-36-56.sky.zip

11 May 2020 16:30:10,900 INFO : 100% Done

11 May 2020 16:30:10,913 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80425/CPDR-FFPE-ID-1552_2020-01-29_12-36-56.sky.zip into the system

11 May 2020 16:30:10,913 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80429/CPDR-FFPE-ID-1423_2020-01-29_12-38-07/CPDR-FFPE-ID-1423.skyd into the system

11 May 2020 16:30:10,915 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80429/CPDR-FFPE-ID-1423_2020-01-29_12-38-07/CPDR-FFPE-ID-1423.skyd into the system

11 May 2020 16:30:10,915 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80429/CPDR-FFPE-ID-1423_2020-01-29_12-38-07.sky.zip into the system

11 May 2020 16:30:10,919 INFO : Starting import from CPDR-FFPE-ID-1423_2020-01-29_12-38-07.sky.zip

11 May 2020 16:30:10,926 INFO : Starting to import Skyline document from CPDR-FFPE-ID-1423_2020-01-29_12-38-07.sky.zip

11 May 2020 16:30:10,935 INFO : Expanding CPDR-FFPE-ID-1423.skyd

11 May 2020 16:30:11,176 INFO : Expanding CPDR-FFPE-ID-1423.sky.view

11 May 2020 16:30:11,177 INFO : Expanding CPDR-FFPE-ID-1423.sky

11 May 2020 16:30:11,185 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:30:11,189 INFO : 5% Done

11 May 2020 16:30:11,398 INFO : Inserting ANXA2

11 May 2020 16:30:11,407 INFO : 14% Done

11 May 2020 16:30:11,524 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:11,524 INFO : Inserting CAMKK2

11 May 2020 16:30:11,527 INFO : 22% Done

11 May 2020 16:30:11,657 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:11,657 INFO : 23% Done

11 May 2020 16:30:11,657 INFO : Inserting CCND1

11 May 2020 16:30:11,660 INFO : 28% Done

11 May 2020 16:30:11,752 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:11,752 INFO : Inserting EGFR

11 May 2020 16:30:11,755 INFO : 34% Done

11 May 2020 16:30:11,841 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:11,842 INFO : 35% Done

11 May 2020 16:30:11,842 INFO : Inserting ERG_pan

11 May 2020 16:30:11,844 INFO : 40% Done

11 May 2020 16:30:11,927 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:11,927 INFO : 41% Done

11 May 2020 16:30:11,927 INFO : Inserting FOLH1

11 May 2020 16:30:11,929 INFO : 45% Done

11 May 2020 16:30:11,993 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:11,993 INFO : Inserting MMP9

11 May 2020 16:30:11,996 INFO : 53% Done

11 May 2020 16:30:12,103 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:12,103 INFO : Inserting MUC1

11 May 2020 16:30:12,106 INFO : 58% Done

11 May 2020 16:30:12,186 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:12,186 INFO : 59% Done

11 May 2020 16:30:12,186 INFO : Inserting NCOA2

11 May 2020 16:30:12,188 INFO : 65% Done

11 May 2020 16:30:12,280 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:12,280 INFO : Inserting PSA

11 May 2020 16:30:12,282 INFO : 70% Done

11 May 2020 16:30:12,342 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:12,342 INFO : Inserting SMAD4

11 May 2020 16:30:12,345 INFO : 75% Done

11 May 2020 16:30:12,428 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:12,428 INFO : Inserting SPINK1

11 May 2020 16:30:12,430 INFO : 80% Done

11 May 2020 16:30:12,506 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:12,506 INFO : Inserting SPRC

11 May 2020 16:30:12,508 INFO : 86% Done

11 May 2020 16:30:12,576 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:12,576 INFO : Inserting TFF3

11 May 2020 16:30:12,579 INFO : 89% Done

11 May 2020 16:30:12,640 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:12,641 INFO : Inserting TGFB1

11 May 2020 16:30:12,642 INFO : 90% Done

11 May 2020 16:30:12,667 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:12,667 INFO : 92% Done

11 May 2020 16:30:12,667 INFO : Inserting VEGFA

11 May 2020 16:30:12,671 INFO : 98% Done

11 May 2020 16:30:12,800 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:12,800 INFO : Done parsing Skyline document.

11 May 2020 16:30:12,802 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:30:12,831 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:30:12,899 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:30:12,925 INFO : Cleaning up temp tables

11 May 2020 16:30:13,268 INFO : Completed import of Skyline document from CPDR-FFPE-ID-1423_2020-01-29_12-38-07.sky.zip

11 May 2020 16:30:13,269 INFO : 100% Done

11 May 2020 16:30:13,282 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80429/CPDR-FFPE-ID-1423_2020-01-29_12-38-07.sky.zip into the system

11 May 2020 16:30:13,282 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80430/CPDR-FFPE-ID-995_2020-01-29_12-38-23/CPDR-FFPE-ID-995.skyd into the system

11 May 2020 16:30:13,283 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80430/CPDR-FFPE-ID-995_2020-01-29_12-38-23/CPDR-FFPE-ID-995.skyd into the system

11 May 2020 16:30:13,283 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80430/CPDR-FFPE-ID-995_2020-01-29_12-38-23.sky.zip into the system

11 May 2020 16:30:13,287 INFO : Starting import from CPDR-FFPE-ID-995_2020-01-29_12-38-23.sky.zip

11 May 2020 16:30:13,293 INFO : Starting to import Skyline document from CPDR-FFPE-ID-995_2020-01-29_12-38-23.sky.zip

11 May 2020 16:30:13,303 INFO : Expanding CPDR-FFPE-ID-995.skyd

11 May 2020 16:30:13,526 INFO : Expanding CPDR-FFPE-ID-995.sky.view

11 May 2020 16:30:13,526 INFO : Expanding CPDR-FFPE-ID-995.sky

11 May 2020 16:30:13,535 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:30:13,538 INFO : 5% Done

11 May 2020 16:30:13,751 INFO : Inserting ANXA2

11 May 2020 16:30:13,759 INFO : 13% Done

11 May 2020 16:30:13,864 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:13,864 INFO : Inserting CAMKK2

11 May 2020 16:30:13,867 INFO : 20% Done

11 May 2020 16:30:13,963 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:13,963 INFO : 21% Done

11 May 2020 16:30:13,963 INFO : Inserting CCND1

11 May 2020 16:30:13,966 INFO : 26% Done

11 May 2020 16:30:14,059 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:14,060 INFO : Inserting EGFR

11 May 2020 16:30:14,062 INFO : 32% Done

11 May 2020 16:30:14,140 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:14,140 INFO : Inserting ERG_pan

11 May 2020 16:30:14,143 INFO : 41% Done

11 May 2020 16:30:14,253 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:14,253 INFO : Inserting FOLH1

11 May 2020 16:30:14,255 INFO : 44% Done

11 May 2020 16:30:14,311 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:14,312 INFO : Inserting MMP9

11 May 2020 16:30:14,314 INFO : 51% Done

11 May 2020 16:30:14,414 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:14,414 INFO : Inserting MUC1

11 May 2020 16:30:14,416 INFO : 56% Done

11 May 2020 16:30:14,481 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:14,482 INFO : 57% Done

11 May 2020 16:30:14,482 INFO : Inserting NCOA2

11 May 2020 16:30:14,484 INFO : 63% Done

11 May 2020 16:30:14,568 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:14,568 INFO : Inserting PSA

11 May 2020 16:30:14,570 INFO : 68% Done

11 May 2020 16:30:14,632 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:14,632 INFO : Inserting SMAD4

11 May 2020 16:30:14,634 INFO : 74% Done

11 May 2020 16:30:14,714 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:14,714 INFO : Inserting SPINK1

11 May 2020 16:30:14,717 INFO : 78% Done

11 May 2020 16:30:14,786 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:14,786 INFO : Inserting SPRC

11 May 2020 16:30:14,789 INFO : 84% Done

11 May 2020 16:30:14,868 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:14,868 INFO : Inserting TFF3

11 May 2020 16:30:14,871 INFO : 88% Done

11 May 2020 16:30:14,934 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:14,934 INFO : Inserting TGFB1

11 May 2020 16:30:14,936 INFO : 91% Done

11 May 2020 16:30:14,968 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:14,968 INFO : Inserting VEGFA

11 May 2020 16:30:14,972 INFO : 98% Done

11 May 2020 16:30:15,088 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:15,088 INFO : Done parsing Skyline document.

11 May 2020 16:30:15,090 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:30:15,119 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:30:15,185 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:30:15,210 INFO : Cleaning up temp tables

11 May 2020 16:30:15,578 INFO : Completed import of Skyline document from CPDR-FFPE-ID-995_2020-01-29_12-38-23.sky.zip

11 May 2020 16:30:15,579 INFO : 100% Done

11 May 2020 16:30:15,589 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80430/CPDR-FFPE-ID-995_2020-01-29_12-38-23.sky.zip into the system

11 May 2020 16:30:15,589 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80433/CPDR-FFPE-ID-804_2020-01-29_12-39-10/CPDR-FFPE-ID-804.skyd into the system

11 May 2020 16:30:15,590 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80433/CPDR-FFPE-ID-804_2020-01-29_12-39-10/CPDR-FFPE-ID-804.skyd into the system

11 May 2020 16:30:15,590 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80433/CPDR-FFPE-ID-804_2020-01-29_12-39-10.sky.zip into the system

11 May 2020 16:30:15,594 INFO : Starting import from CPDR-FFPE-ID-804_2020-01-29_12-39-10.sky.zip

11 May 2020 16:30:15,599 INFO : Starting to import Skyline document from CPDR-FFPE-ID-804_2020-01-29_12-39-10.sky.zip

11 May 2020 16:30:15,606 INFO : Expanding CPDR-FFPE-ID-804.skyd

11 May 2020 16:30:15,795 INFO : Expanding CPDR-FFPE-ID-804.sky.view

11 May 2020 16:30:15,796 INFO : Expanding CPDR-FFPE-ID-804.sky

11 May 2020 16:30:15,803 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:30:15,805 INFO : 5% Done

11 May 2020 16:30:15,990 INFO : Inserting ANXA2

11 May 2020 16:30:15,996 INFO : 13% Done

11 May 2020 16:30:16,085 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:16,085 INFO : Inserting CAMKK2

11 May 2020 16:30:16,086 INFO : 22% Done

11 May 2020 16:30:16,135 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:16,135 INFO : Inserting CCND1

11 May 2020 16:30:16,136 INFO : 27% Done

11 May 2020 16:30:16,168 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:16,168 INFO : Inserting EGFR

11 May 2020 16:30:16,169 INFO : 33% Done

11 May 2020 16:30:16,203 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:16,203 INFO : Inserting ERG_pan

11 May 2020 16:30:16,204 INFO : 41% Done

11 May 2020 16:30:16,245 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:16,245 INFO : Inserting FOLH1

11 May 2020 16:30:16,245 INFO : 45% Done

11 May 2020 16:30:16,267 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:16,267 INFO : Inserting MMP9

11 May 2020 16:30:16,268 INFO : 52% Done

11 May 2020 16:30:16,308 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:16,308 INFO : Inserting MUC1

11 May 2020 16:30:16,309 INFO : 58% Done

11 May 2020 16:30:16,340 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:16,340 INFO : Inserting NCOA2

11 May 2020 16:30:16,341 INFO : 65% Done

11 May 2020 16:30:16,379 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:16,379 INFO : Inserting PSA

11 May 2020 16:30:16,380 INFO : 69% Done

11 May 2020 16:30:16,405 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:16,405 INFO : Inserting SMAD4

11 May 2020 16:30:16,406 INFO : 74% Done

11 May 2020 16:30:16,438 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:16,438 INFO : Inserting SPINK1

11 May 2020 16:30:16,439 INFO : 80% Done

11 May 2020 16:30:16,470 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:16,470 INFO : Inserting SPRC

11 May 2020 16:30:16,471 INFO : 85% Done

11 May 2020 16:30:16,500 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:16,500 INFO : Inserting TFF3

11 May 2020 16:30:16,501 INFO : 90% Done

11 May 2020 16:30:16,552 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:16,552 INFO : Inserting TGFB1

11 May 2020 16:30:16,554 INFO : 91% Done

11 May 2020 16:30:16,581 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:16,581 INFO : Inserting VEGFA

11 May 2020 16:30:16,584 INFO : 98% Done

11 May 2020 16:30:16,689 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:16,689 INFO : Done parsing Skyline document.

11 May 2020 16:30:16,691 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:30:16,720 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:30:16,787 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:30:16,813 INFO : Cleaning up temp tables

11 May 2020 16:30:17,217 INFO : Completed import of Skyline document from CPDR-FFPE-ID-804_2020-01-29_12-39-10.sky.zip

11 May 2020 16:30:17,219 INFO : 100% Done

11 May 2020 16:30:17,231 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80433/CPDR-FFPE-ID-804_2020-01-29_12-39-10.sky.zip into the system

11 May 2020 16:30:17,231 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80435/CPDR-FFPE-ID-1660_2020-01-29_12-39-36/CPDR-FFPE-ID-1660.skyd into the system

11 May 2020 16:30:17,232 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80435/CPDR-FFPE-ID-1660_2020-01-29_12-39-36/CPDR-FFPE-ID-1660.skyd into the system

11 May 2020 16:30:17,232 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80435/CPDR-FFPE-ID-1660_2020-01-29_12-39-36.sky.zip into the system

11 May 2020 16:30:17,236 INFO : Starting import from CPDR-FFPE-ID-1660_2020-01-29_12-39-36.sky.zip

11 May 2020 16:30:17,242 INFO : Starting to import Skyline document from CPDR-FFPE-ID-1660_2020-01-29_12-39-36.sky.zip

11 May 2020 16:30:17,255 INFO : Expanding CPDR-FFPE-ID-1660.skyd

11 May 2020 16:30:17,561 INFO : Expanding CPDR-FFPE-ID-1660.sky.view

11 May 2020 16:30:17,561 INFO : Expanding CPDR-FFPE-ID-1660.sky

11 May 2020 16:30:17,567 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:30:17,568 INFO : 5% Done

11 May 2020 16:30:17,728 INFO : Inserting ANXA2

11 May 2020 16:30:17,732 INFO : 13% Done

11 May 2020 16:30:17,798 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:17,798 INFO : Inserting CAMKK2

11 May 2020 16:30:17,800 INFO : 21% Done

11 May 2020 16:30:17,865 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:17,865 INFO : Inserting CCND1

11 May 2020 16:30:17,867 INFO : 27% Done

11 May 2020 16:30:17,921 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:17,921 INFO : Inserting EGFR

11 May 2020 16:30:17,922 INFO : 32% Done

11 May 2020 16:30:17,969 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:17,969 INFO : 33% Done

11 May 2020 16:30:17,969 INFO : Inserting ERG_pan

11 May 2020 16:30:17,970 INFO : 39% Done

11 May 2020 16:30:18,028 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:18,028 INFO : Inserting FOLH1

11 May 2020 16:30:18,029 INFO : 42% Done

11 May 2020 16:30:18,057 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:18,057 INFO : Inserting MMP9

11 May 2020 16:30:18,058 INFO : 50% Done

11 May 2020 16:30:18,142 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:18,142 INFO : Inserting MUC1

11 May 2020 16:30:18,143 INFO : 54% Done

11 May 2020 16:30:18,182 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:18,182 INFO : Inserting NCOA2

11 May 2020 16:30:18,184 INFO : 62% Done

11 May 2020 16:30:18,250 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:18,250 INFO : Inserting PSA

11 May 2020 16:30:18,251 INFO : 66% Done

11 May 2020 16:30:18,294 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:18,294 INFO : Inserting SMAD4

11 May 2020 16:30:18,295 INFO : 73% Done

11 May 2020 16:30:18,343 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:18,343 INFO : Inserting SPINK1

11 May 2020 16:30:18,345 INFO : 77% Done

11 May 2020 16:30:18,394 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:18,394 INFO : Inserting SPRC

11 May 2020 16:30:18,395 INFO : 83% Done

11 May 2020 16:30:18,440 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:18,440 INFO : Inserting TFF3

11 May 2020 16:30:18,441 INFO : 88% Done

11 May 2020 16:30:18,515 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:18,515 INFO : Inserting TGFB1

11 May 2020 16:30:18,516 INFO : 91% Done

11 May 2020 16:30:18,558 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:18,558 INFO : Inserting VEGFA

11 May 2020 16:30:18,560 INFO : 98% Done

11 May 2020 16:30:18,625 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:18,625 INFO : Done parsing Skyline document.

11 May 2020 16:30:18,626 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:30:18,641 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:30:18,684 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:30:18,701 INFO : Cleaning up temp tables

11 May 2020 16:30:19,004 INFO : Completed import of Skyline document from CPDR-FFPE-ID-1660_2020-01-29_12-39-36.sky.zip

11 May 2020 16:30:19,005 INFO : 100% Done

11 May 2020 16:30:19,011 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80435/CPDR-FFPE-ID-1660_2020-01-29_12-39-36.sky.zip into the system

11 May 2020 16:30:19,011 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80438/CPDR-FFPE-ID-1350_2020-01-29_12-40-21/CPDR-FFPE-ID-1350.skyd into the system

11 May 2020 16:30:19,012 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80438/CPDR-FFPE-ID-1350_2020-01-29_12-40-21/CPDR-FFPE-ID-1350.skyd into the system

11 May 2020 16:30:19,012 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80438/CPDR-FFPE-ID-1350_2020-01-29_12-40-21.sky.zip into the system

11 May 2020 16:30:19,015 INFO : Starting import from CPDR-FFPE-ID-1350_2020-01-29_12-40-21.sky.zip

11 May 2020 16:30:19,018 INFO : Starting to import Skyline document from CPDR-FFPE-ID-1350_2020-01-29_12-40-21.sky.zip

11 May 2020 16:30:19,023 INFO : Expanding CPDR-FFPE-ID-1350.skyd

11 May 2020 16:30:19,130 INFO : Expanding CPDR-FFPE-ID-1350.sky.view

11 May 2020 16:30:19,131 INFO : Expanding CPDR-FFPE-ID-1350.sky

11 May 2020 16:30:19,135 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:30:19,136 INFO : 6% Done

11 May 2020 16:30:19,224 INFO : Inserting ANXA2

11 May 2020 16:30:19,227 INFO : 13% Done

11 May 2020 16:30:19,268 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:19,268 INFO : Inserting CAMKK2

11 May 2020 16:30:19,269 INFO : 20% Done

11 May 2020 16:30:19,310 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:19,310 INFO : 22% Done

11 May 2020 16:30:19,310 INFO : Inserting CCND1

11 May 2020 16:30:19,311 INFO : 27% Done

11 May 2020 16:30:19,344 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:19,344 INFO : Inserting EGFR

11 May 2020 16:30:19,345 INFO : 33% Done

11 May 2020 16:30:19,381 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:19,381 INFO : Inserting ERG_pan

11 May 2020 16:30:19,382 INFO : 41% Done

11 May 2020 16:30:19,438 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:19,438 INFO : Inserting FOLH1

11 May 2020 16:30:19,439 INFO : 46% Done

11 May 2020 16:30:19,468 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:19,468 INFO : Inserting MMP9

11 May 2020 16:30:19,469 INFO : 52% Done

11 May 2020 16:30:19,509 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:19,509 INFO : Inserting MUC1

11 May 2020 16:30:19,510 INFO : 58% Done

11 May 2020 16:30:19,544 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:19,544 INFO : Inserting NCOA2

11 May 2020 16:30:19,545 INFO : 65% Done

11 May 2020 16:30:19,600 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:19,600 INFO : Inserting PSA

11 May 2020 16:30:19,601 INFO : 70% Done

11 May 2020 16:30:19,634 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:19,634 INFO : Inserting SMAD4

11 May 2020 16:30:19,635 INFO : 75% Done

11 May 2020 16:30:19,669 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:19,669 INFO : Inserting SPINK1

11 May 2020 16:30:19,670 INFO : 80% Done

11 May 2020 16:30:19,701 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:19,702 INFO : Inserting SPRC

11 May 2020 16:30:19,703 INFO : 86% Done

11 May 2020 16:30:19,736 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:19,736 INFO : Inserting TFF3

11 May 2020 16:30:19,737 INFO : 89% Done

11 May 2020 16:30:19,763 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:19,763 INFO : Inserting TGFB1

11 May 2020 16:30:19,764 INFO : 92% Done

11 May 2020 16:30:19,777 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:19,777 INFO : Inserting VEGFA

11 May 2020 16:30:19,779 INFO : 98% Done

11 May 2020 16:30:19,820 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:19,820 INFO : Done parsing Skyline document.

11 May 2020 16:30:19,821 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:30:19,834 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:30:19,863 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:30:19,874 INFO : Cleaning up temp tables

11 May 2020 16:30:20,140 INFO : Completed import of Skyline document from CPDR-FFPE-ID-1350_2020-01-29_12-40-21.sky.zip

11 May 2020 16:30:20,141 INFO : 100% Done

11 May 2020 16:30:20,146 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80438/CPDR-FFPE-ID-1350_2020-01-29_12-40-21.sky.zip into the system

11 May 2020 16:30:20,147 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80444/CPDR-FFPE-ID-776_2020-01-29_12-44-15/CPDR-FFPE-ID-776.skyd into the system

11 May 2020 16:30:20,147 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80444/CPDR-FFPE-ID-776_2020-01-29_12-44-15/CPDR-FFPE-ID-776.skyd into the system

11 May 2020 16:30:20,147 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80444/CPDR-FFPE-ID-776_2020-01-29_12-44-15.sky.zip into the system

11 May 2020 16:30:20,149 INFO : Starting import from CPDR-FFPE-ID-776_2020-01-29_12-44-15.sky.zip

11 May 2020 16:30:20,152 INFO : Starting to import Skyline document from CPDR-FFPE-ID-776_2020-01-29_12-44-15.sky.zip

11 May 2020 16:30:20,156 INFO : Expanding CPDR-FFPE-ID-776.skyd

11 May 2020 16:30:20,259 INFO : Expanding CPDR-FFPE-ID-776.sky.view

11 May 2020 16:30:20,260 INFO : Expanding CPDR-FFPE-ID-776.sky

11 May 2020 16:30:20,264 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:30:20,265 INFO : 5% Done

11 May 2020 16:30:20,353 INFO : Inserting ANXA2

11 May 2020 16:30:20,356 INFO : 14% Done

11 May 2020 16:30:20,398 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:20,398 INFO : Inserting CAMKK2

11 May 2020 16:30:20,399 INFO : 20% Done

11 May 2020 16:30:20,446 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:20,446 INFO : Inserting CCND1

11 May 2020 16:30:20,447 INFO : 25% Done

11 May 2020 16:30:20,485 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:20,485 INFO : Inserting EGFR

11 May 2020 16:30:20,486 INFO : 31% Done

11 May 2020 16:30:20,526 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:20,526 INFO : Inserting ERG_pan

11 May 2020 16:30:20,527 INFO : 38% Done

11 May 2020 16:30:20,570 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:20,570 INFO : Inserting FOLH1

11 May 2020 16:30:20,571 INFO : 42% Done

11 May 2020 16:30:20,603 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:20,603 INFO : 43% Done

11 May 2020 16:30:20,603 INFO : Inserting MMP9

11 May 2020 16:30:20,605 INFO : 52% Done

11 May 2020 16:30:20,656 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:20,657 INFO : Inserting MUC1

11 May 2020 16:30:20,658 INFO : 57% Done

11 May 2020 16:30:20,694 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:20,694 INFO : Inserting NCOA2

11 May 2020 16:30:20,695 INFO : 63% Done

11 May 2020 16:30:20,730 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:20,730 INFO : Inserting PSA

11 May 2020 16:30:20,731 INFO : 68% Done

11 May 2020 16:30:20,756 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:20,756 INFO : Inserting SMAD4

11 May 2020 16:30:20,757 INFO : 74% Done

11 May 2020 16:30:20,792 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:20,792 INFO : Inserting SPINK1

11 May 2020 16:30:20,793 INFO : 79% Done

11 May 2020 16:30:20,823 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:20,823 INFO : Inserting SPRC

11 May 2020 16:30:20,824 INFO : 84% Done

11 May 2020 16:30:20,854 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:20,855 INFO : Inserting TFF3

11 May 2020 16:30:20,856 INFO : 88% Done

11 May 2020 16:30:20,883 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:20,883 INFO : Inserting TGFB1

11 May 2020 16:30:20,884 INFO : 90% Done

11 May 2020 16:30:20,899 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:20,899 INFO : Inserting VEGFA

11 May 2020 16:30:20,901 INFO : 98% Done

11 May 2020 16:30:20,948 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:20,948 INFO : Done parsing Skyline document.

11 May 2020 16:30:20,949 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:30:20,963 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:30:21,041 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:30:21,052 INFO : Cleaning up temp tables

11 May 2020 16:30:21,374 INFO : Completed import of Skyline document from CPDR-FFPE-ID-776_2020-01-29_12-44-15.sky.zip

11 May 2020 16:30:21,375 INFO : 100% Done

11 May 2020 16:30:21,381 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80444/CPDR-FFPE-ID-776_2020-01-29_12-44-15.sky.zip into the system

11 May 2020 16:30:21,381 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80388/CPDR-FFPE-ID-769_2020-01-29_12-23-21/CPDR-FFPE-ID-769.skyd into the system

11 May 2020 16:30:21,381 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80388/CPDR-FFPE-ID-769_2020-01-29_12-23-21/CPDR-FFPE-ID-769.skyd into the system

11 May 2020 16:30:21,381 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80388/CPDR-FFPE-ID-769_2020-01-29_12-23-21.sky.zip into the system

11 May 2020 16:30:21,383 INFO : Starting import from CPDR-FFPE-ID-769_2020-01-29_12-23-21.sky.zip

11 May 2020 16:30:21,386 INFO : Starting to import Skyline document from CPDR-FFPE-ID-769_2020-01-29_12-23-21.sky.zip

11 May 2020 16:30:21,390 INFO : Expanding CPDR-FFPE-ID-769.skyd

11 May 2020 16:30:21,497 INFO : Expanding CPDR-FFPE-ID-769.sky.view

11 May 2020 16:30:21,497 INFO : Expanding CPDR-FFPE-ID-769.sky

11 May 2020 16:30:21,501 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:30:21,502 INFO : 5% Done

11 May 2020 16:30:21,674 INFO : Inserting ANXA2

11 May 2020 16:30:21,681 INFO : 13% Done

11 May 2020 16:30:21,785 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:21,785 INFO : Inserting CAMKK2

11 May 2020 16:30:21,788 INFO : 23% Done

11 May 2020 16:30:21,905 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:21,906 INFO : Inserting CCND1

11 May 2020 16:30:21,908 INFO : 27% Done

11 May 2020 16:30:21,989 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:21,989 INFO : Inserting EGFR

11 May 2020 16:30:21,992 INFO : 35% Done

11 May 2020 16:30:22,058 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:22,058 INFO : Inserting ERG_pan

11 May 2020 16:30:22,059 INFO : 42% Done

11 May 2020 16:30:22,119 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:22,119 INFO : Inserting FOLH1

11 May 2020 16:30:22,120 INFO : 46% Done

11 May 2020 16:30:22,153 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:22,153 INFO : Inserting MMP9

11 May 2020 16:30:22,154 INFO : 55% Done

11 May 2020 16:30:22,207 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:22,207 INFO : Inserting MUC1

11 May 2020 16:30:22,208 INFO : 59% Done

11 May 2020 16:30:22,238 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:22,239 INFO : 60% Done

11 May 2020 16:30:22,239 INFO : Inserting NCOA2

11 May 2020 16:30:22,240 INFO : 66% Done

11 May 2020 16:30:22,303 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:22,303 INFO : Inserting PSA

11 May 2020 16:30:22,304 INFO : 71% Done

11 May 2020 16:30:22,343 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:22,344 INFO : Inserting SMAD4

11 May 2020 16:30:22,345 INFO : 76% Done

11 May 2020 16:30:22,387 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:22,387 INFO : Inserting SPINK1

11 May 2020 16:30:22,389 INFO : 79% Done

11 May 2020 16:30:22,415 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:22,415 INFO : 81% Done

11 May 2020 16:30:22,415 INFO : Inserting SPRC

11 May 2020 16:30:22,417 INFO : 84% Done

11 May 2020 16:30:22,445 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:22,445 INFO : Inserting TFF3

11 May 2020 16:30:22,446 INFO : 89% Done

11 May 2020 16:30:22,478 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:22,479 INFO : 90% Done

11 May 2020 16:30:22,479 INFO : Inserting TGFB1

11 May 2020 16:30:22,480 INFO : 92% Done

11 May 2020 16:30:22,489 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:22,489 INFO : Inserting VEGFA

11 May 2020 16:30:22,490 INFO : 98% Done

11 May 2020 16:30:22,538 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:22,538 INFO : Done parsing Skyline document.

11 May 2020 16:30:22,540 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:30:22,553 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:30:22,598 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:30:22,608 INFO : Cleaning up temp tables

11 May 2020 16:30:22,928 INFO : Completed import of Skyline document from CPDR-FFPE-ID-769_2020-01-29_12-23-21.sky.zip

11 May 2020 16:30:22,929 INFO : 100% Done

11 May 2020 16:30:22,935 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80388/CPDR-FFPE-ID-769_2020-01-29_12-23-21.sky.zip into the system

11 May 2020 16:30:22,935 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80399/CPDR-FFPE-ID-698_2020-01-29_12-26-45/CPDR-FFPE-ID-698.skyd into the system

11 May 2020 16:30:22,935 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80399/CPDR-FFPE-ID-698_2020-01-29_12-26-45/CPDR-FFPE-ID-698.skyd into the system

11 May 2020 16:30:22,935 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80399/CPDR-FFPE-ID-698_2020-01-29_12-26-45.sky.zip into the system

11 May 2020 16:30:22,937 INFO : Starting import from CPDR-FFPE-ID-698_2020-01-29_12-26-45.sky.zip

11 May 2020 16:30:22,940 INFO : Starting to import Skyline document from CPDR-FFPE-ID-698_2020-01-29_12-26-45.sky.zip

11 May 2020 16:30:22,945 INFO : Expanding CPDR-FFPE-ID-698.skyd

11 May 2020 16:30:23,055 INFO : Expanding CPDR-FFPE-ID-698.sky.view

11 May 2020 16:30:23,055 INFO : Expanding CPDR-FFPE-ID-698.sky

11 May 2020 16:30:23,060 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:30:23,061 INFO : 5% Done

11 May 2020 16:30:23,203 INFO : Inserting ANXA2

11 May 2020 16:30:23,206 INFO : 14% Done

11 May 2020 16:30:23,264 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:23,264 INFO : Inserting CAMKK2

11 May 2020 16:30:23,266 INFO : 21% Done

11 May 2020 16:30:23,314 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:23,314 INFO : Inserting CCND1

11 May 2020 16:30:23,315 INFO : 27% Done

11 May 2020 16:30:23,369 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:23,369 INFO : Inserting EGFR

11 May 2020 16:30:23,370 INFO : 32% Done

11 May 2020 16:30:23,412 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:23,412 INFO : Inserting ERG_pan

11 May 2020 16:30:23,414 INFO : 39% Done

11 May 2020 16:30:23,464 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:23,464 INFO : Inserting FOLH1

11 May 2020 16:30:23,465 INFO : 42% Done

11 May 2020 16:30:23,490 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:23,490 INFO : 43% Done

11 May 2020 16:30:23,490 INFO : Inserting MMP9

11 May 2020 16:30:23,491 INFO : 48% Done

11 May 2020 16:30:23,542 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:23,542 INFO : 49% Done

11 May 2020 16:30:23,542 INFO : Inserting MUC1

11 May 2020 16:30:23,543 INFO : 53% Done

11 May 2020 16:30:23,573 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:23,573 INFO : Inserting NCOA2

11 May 2020 16:30:23,575 INFO : 60% Done

11 May 2020 16:30:23,629 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:23,629 INFO : Inserting PSA

11 May 2020 16:30:23,630 INFO : 65% Done

11 May 2020 16:30:23,667 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:23,667 INFO : Inserting SMAD4

11 May 2020 16:30:23,668 INFO : 72% Done

11 May 2020 16:30:23,718 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:23,718 INFO : Inserting SPINK1

11 May 2020 16:30:23,720 INFO : 77% Done

11 May 2020 16:30:23,766 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:23,766 INFO : Inserting SPRC

11 May 2020 16:30:23,767 INFO : 83% Done

11 May 2020 16:30:23,814 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:23,814 INFO : Inserting TFF3

11 May 2020 16:30:23,815 INFO : 88% Done

11 May 2020 16:30:23,854 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:23,854 INFO : Inserting TGFB1

11 May 2020 16:30:23,855 INFO : 90% Done

11 May 2020 16:30:23,873 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:23,873 INFO : Inserting VEGFA

11 May 2020 16:30:23,875 INFO : 98% Done

11 May 2020 16:30:23,942 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:23,942 INFO : Done parsing Skyline document.

11 May 2020 16:30:23,943 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:30:23,957 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:30:23,992 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:30:24,005 INFO : Cleaning up temp tables

11 May 2020 16:30:24,255 INFO : Completed import of Skyline document from CPDR-FFPE-ID-698_2020-01-29_12-26-45.sky.zip

11 May 2020 16:30:24,256 INFO : 100% Done

11 May 2020 16:30:24,261 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80399/CPDR-FFPE-ID-698_2020-01-29_12-26-45.sky.zip into the system

11 May 2020 16:30:24,261 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80405/CPDR-FFPE-ID-912_2020-01-29_12-31-33/CPDR-FFPE-ID-912.skyd into the system

11 May 2020 16:30:24,262 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80405/CPDR-FFPE-ID-912_2020-01-29_12-31-33/CPDR-FFPE-ID-912.skyd into the system

11 May 2020 16:30:24,262 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80405/CPDR-FFPE-ID-912_2020-01-29_12-31-33.sky.zip into the system

11 May 2020 16:30:24,265 INFO : Starting import from CPDR-FFPE-ID-912_2020-01-29_12-31-33.sky.zip

11 May 2020 16:30:24,268 INFO : Starting to import Skyline document from CPDR-FFPE-ID-912_2020-01-29_12-31-33.sky.zip

11 May 2020 16:30:24,273 INFO : Expanding CPDR-FFPE-ID-912.skyd

11 May 2020 16:30:24,405 INFO : Expanding CPDR-FFPE-ID-912.sky.view

11 May 2020 16:30:24,406 INFO : Expanding CPDR-FFPE-ID-912.sky

11 May 2020 16:30:24,410 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:30:24,412 INFO : 6% Done

11 May 2020 16:30:24,563 INFO : Inserting ANXA2

11 May 2020 16:30:24,567 INFO : 15% Done

11 May 2020 16:30:24,618 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:24,618 INFO : Inserting CAMKK2

11 May 2020 16:30:24,620 INFO : 21% Done

11 May 2020 16:30:24,676 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:24,676 INFO : Inserting CCND1

11 May 2020 16:30:24,677 INFO : 26% Done

11 May 2020 16:30:24,720 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:24,720 INFO : Inserting EGFR

11 May 2020 16:30:24,722 INFO : 33% Done

11 May 2020 16:30:24,767 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:24,767 INFO : Inserting ERG_pan

11 May 2020 16:30:24,769 INFO : 43% Done

11 May 2020 16:30:24,835 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:24,836 INFO : Inserting FOLH1

11 May 2020 16:30:24,837 INFO : 47% Done

11 May 2020 16:30:24,900 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:24,900 INFO : Inserting MMP9

11 May 2020 16:30:24,902 INFO : 54% Done

11 May 2020 16:30:25,003 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:25,003 INFO : Inserting MUC1

11 May 2020 16:30:25,004 INFO : 60% Done

11 May 2020 16:30:25,090 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:25,090 INFO : Inserting NCOA2

11 May 2020 16:30:25,092 INFO : 67% Done

11 May 2020 16:30:25,192 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:25,193 INFO : Inserting PSA

11 May 2020 16:30:25,194 INFO : 71% Done

11 May 2020 16:30:25,249 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:25,249 INFO : Inserting SMAD4

11 May 2020 16:30:25,251 INFO : 75% Done

11 May 2020 16:30:25,331 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:25,331 INFO : Inserting SPINK1

11 May 2020 16:30:25,333 INFO : 80% Done

11 May 2020 16:30:25,400 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:25,400 INFO : Inserting SPRC

11 May 2020 16:30:25,401 INFO : 84% Done

11 May 2020 16:30:25,465 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:25,465 INFO : Inserting TFF3

11 May 2020 16:30:25,466 INFO : 88% Done

11 May 2020 16:30:25,519 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:25,520 INFO : Inserting TGFB1

11 May 2020 16:30:25,521 INFO : 91% Done

11 May 2020 16:30:25,547 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:25,547 INFO : Inserting VEGFA

11 May 2020 16:30:25,549 INFO : 98% Done

11 May 2020 16:30:25,650 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:25,650 INFO : Done parsing Skyline document.

11 May 2020 16:30:25,651 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:30:25,678 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:30:25,756 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:30:25,785 INFO : Cleaning up temp tables

11 May 2020 16:30:26,070 INFO : Completed import of Skyline document from CPDR-FFPE-ID-912_2020-01-29_12-31-33.sky.zip

11 May 2020 16:30:26,071 INFO : 100% Done

11 May 2020 16:30:26,080 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80405/CPDR-FFPE-ID-912_2020-01-29_12-31-33.sky.zip into the system

11 May 2020 16:30:26,080 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80411/CPDR-FFPE-ID-224_2020-01-29_12-33-29/CPDR-FFPE-ID-224.skyd into the system

11 May 2020 16:30:26,080 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80411/CPDR-FFPE-ID-224_2020-01-29_12-33-29/CPDR-FFPE-ID-224.skyd into the system

11 May 2020 16:30:26,081 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80411/CPDR-FFPE-ID-224_2020-01-29_12-33-29.sky.zip into the system

11 May 2020 16:30:26,083 INFO : Starting import from CPDR-FFPE-ID-224_2020-01-29_12-33-29.sky.zip

11 May 2020 16:30:26,087 INFO : Starting to import Skyline document from CPDR-FFPE-ID-224_2020-01-29_12-33-29.sky.zip

11 May 2020 16:30:26,091 INFO : Expanding CPDR-FFPE-ID-224.skyd

11 May 2020 16:30:26,199 INFO : Expanding CPDR-FFPE-ID-224.sky.view

11 May 2020 16:30:26,200 INFO : Expanding CPDR-FFPE-ID-224.sky

11 May 2020 16:30:26,204 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:30:26,206 INFO : 6% Done

11 May 2020 16:30:26,357 INFO : Inserting ANXA2

11 May 2020 16:30:26,361 INFO : 13% Done

11 May 2020 16:30:26,434 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:26,434 INFO : Inserting CAMKK2

11 May 2020 16:30:26,435 INFO : 22% Done

11 May 2020 16:30:26,513 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:26,513 INFO : Inserting CCND1

11 May 2020 16:30:26,514 INFO : 27% Done

11 May 2020 16:30:26,593 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:26,593 INFO : Inserting EGFR

11 May 2020 16:30:26,594 INFO : 34% Done

11 May 2020 16:30:26,670 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:26,670 INFO : Inserting ERG_pan

11 May 2020 16:30:26,671 INFO : 40% Done

11 May 2020 16:30:26,750 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:26,750 INFO : Inserting FOLH1

11 May 2020 16:30:26,751 INFO : 45% Done

11 May 2020 16:30:26,811 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:26,811 INFO : Inserting MMP9

11 May 2020 16:30:26,813 INFO : 53% Done

11 May 2020 16:30:26,921 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:26,921 INFO : Inserting MUC1

11 May 2020 16:30:26,922 INFO : 59% Done

11 May 2020 16:30:26,995 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:26,995 INFO : Inserting NCOA2

11 May 2020 16:30:26,997 INFO : 66% Done

11 May 2020 16:30:27,061 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:27,061 INFO : Inserting PSA

11 May 2020 16:30:27,062 INFO : 70% Done

11 May 2020 16:30:27,109 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:27,109 INFO : 71% Done

11 May 2020 16:30:27,109 INFO : Inserting SMAD4

11 May 2020 16:30:27,110 INFO : 75% Done

11 May 2020 16:30:27,163 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:27,163 INFO : Inserting SPINK1

11 May 2020 16:30:27,164 INFO : 80% Done

11 May 2020 16:30:27,221 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:27,221 INFO : Inserting SPRC

11 May 2020 16:30:27,222 INFO : 84% Done

11 May 2020 16:30:27,273 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:27,273 INFO : Inserting TFF3

11 May 2020 16:30:27,274 INFO : 89% Done

11 May 2020 16:30:27,318 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:27,318 INFO : Inserting TGFB1

11 May 2020 16:30:27,319 INFO : 92% Done

11 May 2020 16:30:27,340 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:27,340 INFO : Inserting VEGFA

11 May 2020 16:30:27,341 INFO : 98% Done

11 May 2020 16:30:27,420 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:27,420 INFO : Done parsing Skyline document.

11 May 2020 16:30:27,421 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:30:27,445 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:30:27,505 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:30:27,525 INFO : Cleaning up temp tables

11 May 2020 16:30:27,797 INFO : Completed import of Skyline document from CPDR-FFPE-ID-224_2020-01-29_12-33-29.sky.zip

11 May 2020 16:30:27,798 INFO : 100% Done

11 May 2020 16:30:27,805 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80411/CPDR-FFPE-ID-224_2020-01-29_12-33-29.sky.zip into the system

11 May 2020 16:30:27,805 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80413/CPDR-FFPE-ID-1502_2020-01-29_12-33-53/CPDR-FFPE-ID-1502.skyd into the system

11 May 2020 16:30:27,806 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80413/CPDR-FFPE-ID-1502_2020-01-29_12-33-53/CPDR-FFPE-ID-1502.skyd into the system

11 May 2020 16:30:27,806 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80413/CPDR-FFPE-ID-1502_2020-01-29_12-33-53.sky.zip into the system

11 May 2020 16:30:27,808 INFO : Starting import from CPDR-FFPE-ID-1502_2020-01-29_12-33-53.sky.zip

11 May 2020 16:30:27,812 INFO : Starting to import Skyline document from CPDR-FFPE-ID-1502_2020-01-29_12-33-53.sky.zip

11 May 2020 16:30:27,818 INFO : Expanding CPDR-FFPE-ID-1502.skyd

11 May 2020 16:30:27,940 INFO : Expanding CPDR-FFPE-ID-1502.sky.view

11 May 2020 16:30:27,940 INFO : Expanding CPDR-FFPE-ID-1502.sky

11 May 2020 16:30:27,945 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:30:27,947 INFO : 6% Done

11 May 2020 16:30:28,224 INFO : Inserting ANXA2

11 May 2020 16:30:28,230 INFO : 12% Done

11 May 2020 16:30:28,314 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:28,314 INFO : Inserting CAMKK2

11 May 2020 16:30:28,315 INFO : 20% Done

11 May 2020 16:30:28,425 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:28,425 INFO : Inserting CCND1

11 May 2020 16:30:28,426 INFO : 25% Done

11 May 2020 16:30:28,516 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:28,517 INFO : 26% Done

11 May 2020 16:30:28,517 INFO : Inserting EGFR

11 May 2020 16:30:28,518 INFO : 32% Done

11 May 2020 16:30:28,611 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:28,611 INFO : Inserting ERG_pan

11 May 2020 16:30:28,613 INFO : 39% Done

11 May 2020 16:30:28,709 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:28,709 INFO : Inserting FOLH1

11 May 2020 16:30:28,710 INFO : 42% Done

11 May 2020 16:30:28,757 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:28,757 INFO : Inserting MMP9

11 May 2020 16:30:28,758 INFO : 50% Done

11 May 2020 16:30:28,882 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:28,883 INFO : Inserting MUC1

11 May 2020 16:30:28,884 INFO : 56% Done

11 May 2020 16:30:28,959 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:28,959 INFO : Inserting NCOA2

11 May 2020 16:30:28,961 INFO : 63% Done

11 May 2020 16:30:29,059 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:29,059 INFO : Inserting PSA

11 May 2020 16:30:29,061 INFO : 68% Done

11 May 2020 16:30:29,127 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:29,128 INFO : 69% Done

11 May 2020 16:30:29,128 INFO : Inserting SMAD4

11 May 2020 16:30:29,129 INFO : 74% Done

11 May 2020 16:30:29,203 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:29,204 INFO : Inserting SPINK1

11 May 2020 16:30:29,205 INFO : 77% Done

11 May 2020 16:30:29,256 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:29,256 INFO : Inserting SPRC

11 May 2020 16:30:29,258 INFO : 82% Done

11 May 2020 16:30:29,324 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:29,324 INFO : Inserting TFF3

11 May 2020 16:30:29,325 INFO : 88% Done

11 May 2020 16:30:29,391 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:29,391 INFO : Inserting TGFB1

11 May 2020 16:30:29,392 INFO : 91% Done

11 May 2020 16:30:29,430 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:29,430 INFO : Inserting VEGFA

11 May 2020 16:30:29,431 INFO : 98% Done

11 May 2020 16:30:29,529 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:29,529 INFO : Done parsing Skyline document.

11 May 2020 16:30:29,530 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:30:29,553 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:30:29,638 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:30:29,662 INFO : Cleaning up temp tables

11 May 2020 16:30:29,965 INFO : Completed import of Skyline document from CPDR-FFPE-ID-1502_2020-01-29_12-33-53.sky.zip

11 May 2020 16:30:29,967 INFO : 100% Done

11 May 2020 16:30:29,975 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80413/CPDR-FFPE-ID-1502_2020-01-29_12-33-53.sky.zip into the system

11 May 2020 16:30:29,975 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80415/CPDR-FFPE-ID-958_2020-01-29_12-34-21/CPDR-FFPE-ID-958.skyd into the system

11 May 2020 16:30:29,976 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80415/CPDR-FFPE-ID-958_2020-01-29_12-34-21/CPDR-FFPE-ID-958.skyd into the system

11 May 2020 16:30:29,976 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80415/CPDR-FFPE-ID-958_2020-01-29_12-34-21.sky.zip into the system

11 May 2020 16:30:29,978 INFO : Starting import from CPDR-FFPE-ID-958_2020-01-29_12-34-21.sky.zip

11 May 2020 16:30:29,983 INFO : Starting to import Skyline document from CPDR-FFPE-ID-958_2020-01-29_12-34-21.sky.zip

11 May 2020 16:30:29,988 INFO : Expanding CPDR-FFPE-ID-958.skyd

11 May 2020 16:30:30,108 INFO : Expanding CPDR-FFPE-ID-958.sky.view

11 May 2020 16:30:30,108 INFO : Expanding CPDR-FFPE-ID-958.sky

11 May 2020 16:30:30,113 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:30:30,116 INFO : 5% Done

11 May 2020 16:30:30,327 INFO : Inserting ANXA2

11 May 2020 16:30:30,333 INFO : 14% Done

11 May 2020 16:30:30,434 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:30,434 INFO : Inserting CAMKK2

11 May 2020 16:30:30,436 INFO : 21% Done

11 May 2020 16:30:30,535 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:30,535 INFO : Inserting CCND1

11 May 2020 16:30:30,537 INFO : 27% Done

11 May 2020 16:30:30,629 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:30,629 INFO : Inserting EGFR

11 May 2020 16:30:30,630 INFO : 33% Done

11 May 2020 16:30:30,704 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:30,704 INFO : Inserting ERG_pan

11 May 2020 16:30:30,705 INFO : 39% Done

11 May 2020 16:30:30,790 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:30,790 INFO : Inserting FOLH1

11 May 2020 16:30:30,791 INFO : 43% Done

11 May 2020 16:30:30,848 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:30,848 INFO : Inserting MMP9

11 May 2020 16:30:30,850 INFO : 52% Done

11 May 2020 16:30:30,958 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:30,958 INFO : Inserting MUC1

11 May 2020 16:30:30,959 INFO : 58% Done

11 May 2020 16:30:31,034 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:31,034 INFO : Inserting NCOA2

11 May 2020 16:30:31,035 INFO : 64% Done

11 May 2020 16:30:31,109 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:31,109 INFO : Inserting PSA

11 May 2020 16:30:31,111 INFO : 69% Done

11 May 2020 16:30:31,164 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:31,164 INFO : Inserting SMAD4

11 May 2020 16:30:31,165 INFO : 74% Done

11 May 2020 16:30:31,227 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:31,227 INFO : Inserting SPINK1

11 May 2020 16:30:31,229 INFO : 80% Done

11 May 2020 16:30:31,289 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:31,289 INFO : Inserting SPRC

11 May 2020 16:30:31,290 INFO : 84% Done

11 May 2020 16:30:31,352 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:31,352 INFO : Inserting TFF3

11 May 2020 16:30:31,353 INFO : 89% Done

11 May 2020 16:30:31,407 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:31,407 INFO : Inserting TGFB1

11 May 2020 16:30:31,408 INFO : 91% Done

11 May 2020 16:30:31,430 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:31,430 INFO : Inserting VEGFA

11 May 2020 16:30:31,431 INFO : 98% Done

11 May 2020 16:30:31,511 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:31,511 INFO : Done parsing Skyline document.

11 May 2020 16:30:31,512 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:30:31,535 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:30:31,595 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:30:31,617 INFO : Cleaning up temp tables

11 May 2020 16:30:31,619 INFO : Completed import of Skyline document from CPDR-FFPE-ID-958_2020-01-29_12-34-21.sky.zip

11 May 2020 16:30:31,624 INFO : 100% Done

11 May 2020 16:30:31,632 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80415/CPDR-FFPE-ID-958_2020-01-29_12-34-21.sky.zip into the system

11 May 2020 16:30:31,633 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80416/CPDR-FFPE-ID-1177_2020-01-29_12-34-34/CPDR-FFPE-ID-1177.skyd into the system

11 May 2020 16:30:31,633 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80416/CPDR-FFPE-ID-1177_2020-01-29_12-34-34/CPDR-FFPE-ID-1177.skyd into the system

11 May 2020 16:30:31,633 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80416/CPDR-FFPE-ID-1177_2020-01-29_12-34-34.sky.zip into the system

11 May 2020 16:30:31,636 INFO : Starting import from CPDR-FFPE-ID-1177_2020-01-29_12-34-34.sky.zip

11 May 2020 16:30:31,640 INFO : Starting to import Skyline document from CPDR-FFPE-ID-1177_2020-01-29_12-34-34.sky.zip

11 May 2020 16:30:31,645 INFO : Expanding CPDR-FFPE-ID-1177.skyd

11 May 2020 16:30:31,783 INFO : Expanding CPDR-FFPE-ID-1177.sky.view

11 May 2020 16:30:31,784 INFO : Expanding CPDR-FFPE-ID-1177.sky

11 May 2020 16:30:31,789 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:30:31,791 INFO : 6% Done

11 May 2020 16:30:32,171 INFO : Inserting ANXA2

11 May 2020 16:30:32,177 INFO : 14% Done

11 May 2020 16:30:32,430 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:32,430 INFO : Inserting CAMKK2

11 May 2020 16:30:32,432 INFO : 22% Done

11 May 2020 16:30:32,548 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:32,548 INFO : Inserting CCND1

11 May 2020 16:30:32,549 INFO : 27% Done

11 May 2020 16:30:32,635 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:32,635 INFO : Inserting EGFR

11 May 2020 16:30:32,636 INFO : 33% Done

11 May 2020 16:30:32,739 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:32,739 INFO : Inserting ERG_pan

11 May 2020 16:30:32,741 INFO : 42% Done

11 May 2020 16:30:32,879 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:32,879 INFO : 43% Done

11 May 2020 16:30:32,879 INFO : Inserting FOLH1

11 May 2020 16:30:32,881 INFO : 47% Done

11 May 2020 16:30:32,950 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:32,950 INFO : Inserting MMP9

11 May 2020 16:30:32,952 INFO : 56% Done

11 May 2020 16:30:33,088 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:33,088 INFO : Inserting MUC1

11 May 2020 16:30:33,089 INFO : 62% Done

11 May 2020 16:30:33,160 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:33,160 INFO : Inserting NCOA2

11 May 2020 16:30:33,161 INFO : 68% Done

11 May 2020 16:30:33,245 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:33,245 INFO : Inserting PSA

11 May 2020 16:30:33,246 INFO : 70% Done

11 May 2020 16:30:33,286 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:33,286 INFO : 71% Done

11 May 2020 16:30:33,286 INFO : Inserting SMAD4

11 May 2020 16:30:33,287 INFO : 76% Done

11 May 2020 16:30:33,373 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:33,373 INFO : Inserting SPINK1

11 May 2020 16:30:33,374 INFO : 81% Done

11 May 2020 16:30:33,436 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:33,437 INFO : Inserting SPRC

11 May 2020 16:30:33,438 INFO : 85% Done

11 May 2020 16:30:33,496 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:33,496 INFO : Inserting TFF3

11 May 2020 16:30:33,497 INFO : 89% Done

11 May 2020 16:30:33,553 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:33,553 INFO : Inserting TGFB1

11 May 2020 16:30:33,554 INFO : 91% Done

11 May 2020 16:30:33,585 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:33,585 INFO : Inserting VEGFA

11 May 2020 16:30:33,586 INFO : 98% Done

11 May 2020 16:30:33,691 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:33,691 INFO : Done parsing Skyline document.

11 May 2020 16:30:33,692 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:30:33,718 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:30:33,791 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:30:33,820 INFO : Cleaning up temp tables

11 May 2020 16:30:34,095 INFO : Completed import of Skyline document from CPDR-FFPE-ID-1177_2020-01-29_12-34-34.sky.zip

11 May 2020 16:30:34,097 INFO : 100% Done

11 May 2020 16:30:34,108 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80416/CPDR-FFPE-ID-1177_2020-01-29_12-34-34.sky.zip into the system

11 May 2020 16:30:34,109 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80417/CPDR-FFPE-ID-846_2020-01-29_12-34-49/CPDR-FFPE-ID-846.skyd into the system

11 May 2020 16:30:34,110 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80417/CPDR-FFPE-ID-846_2020-01-29_12-34-49/CPDR-FFPE-ID-846.skyd into the system

11 May 2020 16:30:34,110 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80417/CPDR-FFPE-ID-846_2020-01-29_12-34-49.sky.zip into the system

11 May 2020 16:30:34,114 INFO : Starting import from CPDR-FFPE-ID-846_2020-01-29_12-34-49.sky.zip

11 May 2020 16:30:34,121 INFO : Starting to import Skyline document from CPDR-FFPE-ID-846_2020-01-29_12-34-49.sky.zip

11 May 2020 16:30:34,129 INFO : Expanding CPDR-FFPE-ID-846.skyd

11 May 2020 16:30:34,393 INFO : Expanding CPDR-FFPE-ID-846.sky.view

11 May 2020 16:30:34,393 INFO : Expanding CPDR-FFPE-ID-846.sky

11 May 2020 16:30:34,402 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:30:34,405 INFO : 5% Done

11 May 2020 16:30:34,632 INFO : Inserting ANXA2

11 May 2020 16:30:34,640 INFO : 14% Done

11 May 2020 16:30:34,778 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:34,779 INFO : Inserting CAMKK2

11 May 2020 16:30:34,782 INFO : 23% Done

11 May 2020 16:30:34,964 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:34,964 INFO : Inserting CCND1

11 May 2020 16:30:34,967 INFO : 27% Done

11 May 2020 16:30:35,054 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:35,054 INFO : Inserting EGFR

11 May 2020 16:30:35,056 INFO : 34% Done

11 May 2020 16:30:35,155 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:35,155 INFO : Inserting ERG_pan

11 May 2020 16:30:35,158 INFO : 42% Done

11 May 2020 16:30:35,268 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:35,268 INFO : Inserting FOLH1

11 May 2020 16:30:35,270 INFO : 45% Done

11 May 2020 16:30:35,331 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:35,331 INFO : Inserting MMP9

11 May 2020 16:30:35,334 INFO : 53% Done

11 May 2020 16:30:35,457 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:35,458 INFO : Inserting MUC1

11 May 2020 16:30:35,460 INFO : 58% Done

11 May 2020 16:30:35,531 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:35,531 INFO : Inserting NCOA2

11 May 2020 16:30:35,534 INFO : 66% Done

11 May 2020 16:30:35,645 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:35,645 INFO : Inserting PSA

11 May 2020 16:30:35,647 INFO : 69% Done

11 May 2020 16:30:35,709 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:35,709 INFO : Inserting SMAD4

11 May 2020 16:30:35,712 INFO : 75% Done

11 May 2020 16:30:35,814 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:35,814 INFO : Inserting SPINK1

11 May 2020 16:30:35,816 INFO : 78% Done

11 May 2020 16:30:35,877 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:35,877 INFO : 80% Done

11 May 2020 16:30:35,877 INFO : Inserting SPRC

11 May 2020 16:30:35,880 INFO : 84% Done

11 May 2020 16:30:35,953 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:35,953 INFO : Inserting TFF3

11 May 2020 16:30:35,955 INFO : 88% Done

11 May 2020 16:30:36,018 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:36,018 INFO : Inserting TGFB1

11 May 2020 16:30:36,019 INFO : 90% Done

11 May 2020 16:30:36,050 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:36,050 INFO : Inserting VEGFA

11 May 2020 16:30:36,053 INFO : 98% Done

11 May 2020 16:30:36,174 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:36,174 INFO : Done parsing Skyline document.

11 May 2020 16:30:36,176 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:30:36,205 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:30:36,281 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:30:36,310 INFO : Cleaning up temp tables

11 May 2020 16:30:36,593 INFO : Completed import of Skyline document from CPDR-FFPE-ID-846_2020-01-29_12-34-49.sky.zip

11 May 2020 16:30:36,595 INFO : 100% Done

11 May 2020 16:30:36,607 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80417/CPDR-FFPE-ID-846_2020-01-29_12-34-49.sky.zip into the system

11 May 2020 16:30:36,607 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80412/CPDR-FFPE-ID-831_2020-01-29_12-33-40/CPDR-FFPE-ID-831.skyd into the system

11 May 2020 16:30:36,608 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80412/CPDR-FFPE-ID-831_2020-01-29_12-33-40/CPDR-FFPE-ID-831.skyd into the system

11 May 2020 16:30:36,609 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80412/CPDR-FFPE-ID-831_2020-01-29_12-33-40.sky.zip into the system

11 May 2020 16:30:36,613 INFO : Starting import from CPDR-FFPE-ID-831_2020-01-29_12-33-40.sky.zip

11 May 2020 16:30:36,620 INFO : Starting to import Skyline document from CPDR-FFPE-ID-831_2020-01-29_12-33-40.sky.zip

11 May 2020 16:30:36,633 INFO : Expanding CPDR-FFPE-ID-831.skyd

11 May 2020 16:30:37,031 INFO : Expanding CPDR-FFPE-ID-831.sky.view

11 May 2020 16:30:37,031 INFO : Expanding CPDR-FFPE-ID-831.sky

11 May 2020 16:30:37,041 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:30:37,044 INFO : 6% Done

11 May 2020 16:30:37,405 INFO : Inserting ANXA2

11 May 2020 16:30:37,412 INFO : 13% Done

11 May 2020 16:30:37,524 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:37,524 INFO : Inserting CAMKK2

11 May 2020 16:30:37,528 INFO : 20% Done

11 May 2020 16:30:37,656 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:37,656 INFO : Inserting CCND1

11 May 2020 16:30:37,659 INFO : 25% Done

11 May 2020 16:30:37,753 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:37,753 INFO : Inserting EGFR

11 May 2020 16:30:37,757 INFO : 32% Done

11 May 2020 16:30:37,904 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:37,904 INFO : Inserting ERG_pan

11 May 2020 16:30:37,909 INFO : 42% Done

11 May 2020 16:30:38,108 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:38,108 INFO : Inserting FOLH1

11 May 2020 16:30:38,111 INFO : 48% Done

11 May 2020 16:30:38,225 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:38,225 INFO : Inserting MMP9

11 May 2020 16:30:38,229 INFO : 56% Done

11 May 2020 16:30:38,377 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:38,377 INFO : Inserting MUC1

11 May 2020 16:30:38,380 INFO : 62% Done

11 May 2020 16:30:38,502 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:38,503 INFO : Inserting NCOA2

11 May 2020 16:30:38,506 INFO : 68% Done

11 May 2020 16:30:38,619 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:38,619 INFO : Inserting PSA

11 May 2020 16:30:38,622 INFO : 73% Done

11 May 2020 16:30:38,704 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:38,705 INFO : Inserting SMAD4

11 May 2020 16:30:38,707 INFO : 77% Done

11 May 2020 16:30:38,808 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:38,808 INFO : Inserting SPINK1

11 May 2020 16:30:38,811 INFO : 82% Done

11 May 2020 16:30:38,901 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:38,902 INFO : Inserting SPRC

11 May 2020 16:30:38,904 INFO : 86% Done

11 May 2020 16:30:38,988 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:38,988 INFO : Inserting TFF3

11 May 2020 16:30:38,990 INFO : 90% Done

11 May 2020 16:30:39,066 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:39,066 INFO : Inserting TGFB1

11 May 2020 16:30:39,068 INFO : 92% Done

11 May 2020 16:30:39,106 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:39,106 INFO : Inserting VEGFA

11 May 2020 16:30:39,109 INFO : 98% Done

11 May 2020 16:30:39,236 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:39,236 INFO : Done parsing Skyline document.

11 May 2020 16:30:39,238 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:30:39,271 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:30:39,374 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:30:39,463 INFO : Cleaning up temp tables

11 May 2020 16:30:39,748 INFO : Completed import of Skyline document from CPDR-FFPE-ID-831_2020-01-29_12-33-40.sky.zip

11 May 2020 16:30:39,750 INFO : 100% Done

11 May 2020 16:30:39,762 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80412/CPDR-FFPE-ID-831_2020-01-29_12-33-40.sky.zip into the system

11 May 2020 16:30:39,762 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80418/CPDR-FFPE-ID-816_2020-01-29_12-35-04/CPDR-FFPE-ID-816.skyd into the system

11 May 2020 16:30:39,763 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80418/CPDR-FFPE-ID-816_2020-01-29_12-35-04/CPDR-FFPE-ID-816.skyd into the system

11 May 2020 16:30:39,763 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80418/CPDR-FFPE-ID-816_2020-01-29_12-35-04.sky.zip into the system

11 May 2020 16:30:39,767 INFO : Starting import from CPDR-FFPE-ID-816_2020-01-29_12-35-04.sky.zip

11 May 2020 16:30:39,774 INFO : Starting to import Skyline document from CPDR-FFPE-ID-816_2020-01-29_12-35-04.sky.zip

11 May 2020 16:30:39,783 INFO : Expanding CPDR-FFPE-ID-816.skyd

11 May 2020 16:30:40,053 INFO : Expanding CPDR-FFPE-ID-816.sky.view

11 May 2020 16:30:40,054 INFO : Expanding CPDR-FFPE-ID-816.sky

11 May 2020 16:30:40,063 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:30:40,066 INFO : 5% Done

11 May 2020 16:30:40,317 INFO : Inserting ANXA2

11 May 2020 16:30:40,325 INFO : 14% Done

11 May 2020 16:30:40,454 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:40,454 INFO : Inserting CAMKK2

11 May 2020 16:30:40,457 INFO : 22% Done

11 May 2020 16:30:40,589 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:40,589 INFO : Inserting CCND1

11 May 2020 16:30:40,592 INFO : 28% Done

11 May 2020 16:30:40,700 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:40,700 INFO : Inserting EGFR

11 May 2020 16:30:40,703 INFO : 34% Done

11 May 2020 16:30:40,808 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:40,808 INFO : Inserting ERG_pan

11 May 2020 16:30:40,811 INFO : 42% Done

11 May 2020 16:30:40,940 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:40,940 INFO : Inserting FOLH1

11 May 2020 16:30:40,942 INFO : 45% Done

11 May 2020 16:30:41,001 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:41,001 INFO : Inserting MMP9

11 May 2020 16:30:41,004 INFO : 53% Done

11 May 2020 16:30:41,127 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:41,127 INFO : Inserting MUC1

11 May 2020 16:30:41,129 INFO : 56% Done

11 May 2020 16:30:41,184 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:41,184 INFO : Inserting NCOA2

11 May 2020 16:30:41,187 INFO : 63% Done

11 May 2020 16:30:41,301 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:41,301 INFO : 64% Done

11 May 2020 16:30:41,301 INFO : Inserting PSA

11 May 2020 16:30:41,303 INFO : 68% Done

11 May 2020 16:30:41,378 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:41,378 INFO : Inserting SMAD4

11 May 2020 16:30:41,380 INFO : 74% Done

11 May 2020 16:30:41,472 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:41,472 INFO : Inserting SPINK1

11 May 2020 16:30:41,475 INFO : 78% Done

11 May 2020 16:30:41,556 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:41,556 INFO : Inserting SPRC

11 May 2020 16:30:41,559 INFO : 84% Done

11 May 2020 16:30:41,648 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:41,648 INFO : Inserting TFF3

11 May 2020 16:30:41,651 INFO : 88% Done

11 May 2020 16:30:41,727 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:41,727 INFO : 89% Done

11 May 2020 16:30:41,727 INFO : Inserting TGFB1

11 May 2020 16:30:41,729 INFO : 91% Done

11 May 2020 16:30:41,770 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:41,771 INFO : Inserting VEGFA

11 May 2020 16:30:41,774 INFO : 98% Done

11 May 2020 16:30:41,900 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:41,900 INFO : Done parsing Skyline document.

11 May 2020 16:30:41,902 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:30:41,932 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:30:42,013 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:30:42,043 INFO : Cleaning up temp tables

11 May 2020 16:30:42,337 INFO : Completed import of Skyline document from CPDR-FFPE-ID-816_2020-01-29_12-35-04.sky.zip

11 May 2020 16:30:42,339 INFO : 100% Done

11 May 2020 16:30:42,351 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80418/CPDR-FFPE-ID-816_2020-01-29_12-35-04.sky.zip into the system

11 May 2020 16:30:42,351 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80420/CPDR-FFPE-ID-1090_2020-01-29_12-35-31/CPDR-FFPE-ID-1090.skyd into the system

11 May 2020 16:30:42,352 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80420/CPDR-FFPE-ID-1090_2020-01-29_12-35-31/CPDR-FFPE-ID-1090.skyd into the system

11 May 2020 16:30:42,352 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80420/CPDR-FFPE-ID-1090_2020-01-29_12-35-31.sky.zip into the system

11 May 2020 16:30:42,356 INFO : Starting import from CPDR-FFPE-ID-1090_2020-01-29_12-35-31.sky.zip

11 May 2020 16:30:42,363 INFO : Starting to import Skyline document from CPDR-FFPE-ID-1090_2020-01-29_12-35-31.sky.zip

11 May 2020 16:30:42,373 INFO : Expanding CPDR-FFPE-ID-1090.skyd

11 May 2020 16:30:42,651 INFO : Expanding CPDR-FFPE-ID-1090.sky.view

11 May 2020 16:30:42,652 INFO : Expanding CPDR-FFPE-ID-1090.sky

11 May 2020 16:30:42,661 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:30:42,664 INFO : 6% Done

11 May 2020 16:30:42,904 INFO : Inserting ANXA2

11 May 2020 16:30:42,909 INFO : 14% Done

11 May 2020 16:30:42,961 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:42,961 INFO : Inserting CAMKK2

11 May 2020 16:30:42,963 INFO : 20% Done

11 May 2020 16:30:43,025 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:43,025 INFO : Inserting CCND1

11 May 2020 16:30:43,028 INFO : 25% Done

11 May 2020 16:30:43,116 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:43,116 INFO : Inserting EGFR

11 May 2020 16:30:43,119 INFO : 32% Done

11 May 2020 16:30:43,224 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:43,224 INFO : Inserting ERG_pan

11 May 2020 16:30:43,228 INFO : 41% Done

11 May 2020 16:30:43,359 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:43,359 INFO : Inserting FOLH1

11 May 2020 16:30:43,362 INFO : 45% Done

11 May 2020 16:30:43,440 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:43,440 INFO : Inserting MMP9

11 May 2020 16:30:43,443 INFO : 54% Done

11 May 2020 16:30:43,571 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:43,571 INFO : Inserting MUC1

11 May 2020 16:30:43,574 INFO : 61% Done

11 May 2020 16:30:43,675 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:43,676 INFO : Inserting NCOA2

11 May 2020 16:30:43,678 INFO : 68% Done

11 May 2020 16:30:43,762 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:43,762 INFO : Inserting PSA

11 May 2020 16:30:43,764 INFO : 71% Done

11 May 2020 16:30:43,835 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:43,835 INFO : 72% Done

11 May 2020 16:30:43,836 INFO : Inserting SMAD4

11 May 2020 16:30:43,838 INFO : 76% Done

11 May 2020 16:30:43,908 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:43,908 INFO : Inserting SPINK1

11 May 2020 16:30:43,911 INFO : 80% Done

11 May 2020 16:30:43,982 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:43,982 INFO : Inserting SPRC

11 May 2020 16:30:43,985 INFO : 85% Done

11 May 2020 16:30:44,036 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:44,036 INFO : 86% Done

11 May 2020 16:30:44,036 INFO : Inserting TFF3

11 May 2020 16:30:44,038 INFO : 89% Done

11 May 2020 16:30:44,075 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:44,075 INFO : Inserting TGFB1

11 May 2020 16:30:44,077 INFO : 91% Done

11 May 2020 16:30:44,094 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:44,095 INFO : Inserting VEGFA

11 May 2020 16:30:44,097 INFO : 98% Done

11 May 2020 16:30:44,154 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:44,154 INFO : Done parsing Skyline document.

11 May 2020 16:30:44,155 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:30:44,170 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:30:44,200 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:30:44,212 INFO : Cleaning up temp tables

11 May 2020 16:30:44,609 INFO : Completed import of Skyline document from CPDR-FFPE-ID-1090_2020-01-29_12-35-31.sky.zip

11 May 2020 16:30:44,611 INFO : 100% Done

11 May 2020 16:30:44,623 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80420/CPDR-FFPE-ID-1090_2020-01-29_12-35-31.sky.zip into the system

11 May 2020 16:30:44,623 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80421/CPDR-FFPE-ID-796_2020-01-29_12-35-45/CPDR-FFPE-ID-796.skyd into the system

11 May 2020 16:30:44,624 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80421/CPDR-FFPE-ID-796_2020-01-29_12-35-45/CPDR-FFPE-ID-796.skyd into the system

11 May 2020 16:30:44,625 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80421/CPDR-FFPE-ID-796_2020-01-29_12-35-45.sky.zip into the system

11 May 2020 16:30:44,628 INFO : Starting import from CPDR-FFPE-ID-796_2020-01-29_12-35-45.sky.zip

11 May 2020 16:30:44,635 INFO : Starting to import Skyline document from CPDR-FFPE-ID-796_2020-01-29_12-35-45.sky.zip

11 May 2020 16:30:44,646 INFO : Expanding CPDR-FFPE-ID-796.skyd

11 May 2020 16:30:44,915 INFO : Expanding CPDR-FFPE-ID-796.sky.view

11 May 2020 16:30:44,915 INFO : Expanding CPDR-FFPE-ID-796.sky

11 May 2020 16:30:44,924 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:30:44,927 INFO : 5% Done

11 May 2020 16:30:45,175 INFO : Inserting ANXA2

11 May 2020 16:30:45,182 INFO : 14% Done

11 May 2020 16:30:45,294 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:45,294 INFO : Inserting CAMKK2

11 May 2020 16:30:45,297 INFO : 21% Done

11 May 2020 16:30:45,420 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:45,420 INFO : Inserting CCND1

11 May 2020 16:30:45,422 INFO : 26% Done

11 May 2020 16:30:45,506 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:45,506 INFO : Inserting EGFR

11 May 2020 16:30:45,509 INFO : 33% Done

11 May 2020 16:30:45,606 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:45,606 INFO : Inserting ERG_pan

11 May 2020 16:30:45,609 INFO : 42% Done

11 May 2020 16:30:45,758 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:45,759 INFO : Inserting FOLH1

11 May 2020 16:30:45,761 INFO : 46% Done

11 May 2020 16:30:45,828 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:45,829 INFO : 47% Done

11 May 2020 16:30:45,829 INFO : Inserting MMP9

11 May 2020 16:30:45,832 INFO : 56% Done

11 May 2020 16:30:45,993 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:45,994 INFO : Inserting MUC1

11 May 2020 16:30:45,996 INFO : 62% Done

11 May 2020 16:30:46,095 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:46,095 INFO : Inserting NCOA2

11 May 2020 16:30:46,098 INFO : 68% Done

11 May 2020 16:30:46,196 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:46,196 INFO : Inserting PSA

11 May 2020 16:30:46,198 INFO : 72% Done

11 May 2020 16:30:46,260 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:46,261 INFO : Inserting SMAD4

11 May 2020 16:30:46,263 INFO : 76% Done

11 May 2020 16:30:46,360 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:46,360 INFO : 77% Done

11 May 2020 16:30:46,360 INFO : Inserting SPINK1

11 May 2020 16:30:46,362 INFO : 81% Done

11 May 2020 16:30:46,434 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:46,434 INFO : Inserting SPRC

11 May 2020 16:30:46,437 INFO : 84% Done

11 May 2020 16:30:46,503 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:46,503 INFO : Inserting TFF3

11 May 2020 16:30:46,506 INFO : 88% Done

11 May 2020 16:30:46,573 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:46,573 INFO : Inserting TGFB1

11 May 2020 16:30:46,575 INFO : 91% Done

11 May 2020 16:30:46,607 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:46,608 INFO : Inserting VEGFA

11 May 2020 16:30:46,610 INFO : 98% Done

11 May 2020 16:30:46,737 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:46,737 INFO : Done parsing Skyline document.

11 May 2020 16:30:46,740 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:30:46,771 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:30:46,854 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:30:46,885 INFO : Cleaning up temp tables

11 May 2020 16:30:46,896 INFO : Completed import of Skyline document from CPDR-FFPE-ID-796_2020-01-29_12-35-45.sky.zip

11 May 2020 16:30:46,897 INFO : 100% Done

11 May 2020 16:30:46,908 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80421/CPDR-FFPE-ID-796_2020-01-29_12-35-45.sky.zip into the system

11 May 2020 16:30:46,908 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80431/CPDR-FFPE-ID-1530_2020-01-29_12-38-39/CPDR-FFPE-ID-1530.skyd into the system

11 May 2020 16:30:46,909 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80431/CPDR-FFPE-ID-1530_2020-01-29_12-38-39/CPDR-FFPE-ID-1530.skyd into the system

11 May 2020 16:30:46,910 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80431/CPDR-FFPE-ID-1530_2020-01-29_12-38-39.sky.zip into the system

11 May 2020 16:30:46,913 INFO : Starting import from CPDR-FFPE-ID-1530_2020-01-29_12-38-39.sky.zip

11 May 2020 16:30:46,920 INFO : Starting to import Skyline document from CPDR-FFPE-ID-1530_2020-01-29_12-38-39.sky.zip

11 May 2020 16:30:46,930 INFO : Expanding CPDR-FFPE-ID-1530.skyd

11 May 2020 16:30:47,178 INFO : Expanding CPDR-FFPE-ID-1530.sky.view

11 May 2020 16:30:47,179 INFO : Expanding CPDR-FFPE-ID-1530.sky

11 May 2020 16:30:47,188 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:30:47,191 INFO : 6% Done

11 May 2020 16:30:47,426 INFO : Inserting ANXA2

11 May 2020 16:30:47,434 INFO : 13% Done

11 May 2020 16:30:47,551 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:47,552 INFO : Inserting CAMKK2

11 May 2020 16:30:47,554 INFO : 21% Done

11 May 2020 16:30:47,666 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:47,666 INFO : Inserting CCND1

11 May 2020 16:30:47,669 INFO : 26% Done

11 May 2020 16:30:47,768 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:47,768 INFO : Inserting EGFR

11 May 2020 16:30:47,771 INFO : 33% Done

11 May 2020 16:30:47,875 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:47,876 INFO : Inserting ERG_pan

11 May 2020 16:30:47,878 INFO : 39% Done

11 May 2020 16:30:47,985 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:47,985 INFO : Inserting FOLH1

11 May 2020 16:30:47,987 INFO : 44% Done

11 May 2020 16:30:48,051 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:48,052 INFO : Inserting MMP9

11 May 2020 16:30:48,055 INFO : 51% Done

11 May 2020 16:30:48,177 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:48,177 INFO : Inserting MUC1

11 May 2020 16:30:48,180 INFO : 57% Done

11 May 2020 16:30:48,260 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:48,261 INFO : Inserting NCOA2

11 May 2020 16:30:48,263 INFO : 63% Done

11 May 2020 16:30:48,365 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:48,366 INFO : Inserting PSA

11 May 2020 16:30:48,368 INFO : 68% Done

11 May 2020 16:30:48,431 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:48,431 INFO : Inserting SMAD4

11 May 2020 16:30:48,434 INFO : 74% Done

11 May 2020 16:30:48,527 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:48,527 INFO : Inserting SPINK1

11 May 2020 16:30:48,529 INFO : 77% Done

11 May 2020 16:30:48,607 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:48,607 INFO : 78% Done

11 May 2020 16:30:48,607 INFO : Inserting SPRC

11 May 2020 16:30:48,609 INFO : 83% Done

11 May 2020 16:30:48,691 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:48,691 INFO : 84% Done

11 May 2020 16:30:48,691 INFO : Inserting TFF3

11 May 2020 16:30:48,693 INFO : 88% Done

11 May 2020 16:30:48,766 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:48,766 INFO : Inserting TGFB1

11 May 2020 16:30:48,768 INFO : 90% Done

11 May 2020 16:30:48,811 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:48,812 INFO : Inserting VEGFA

11 May 2020 16:30:48,815 INFO : 98% Done

11 May 2020 16:30:48,937 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:48,937 INFO : Done parsing Skyline document.

11 May 2020 16:30:48,939 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:30:48,969 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:30:49,043 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:30:49,071 INFO : Cleaning up temp tables

11 May 2020 16:30:49,543 INFO : Completed import of Skyline document from CPDR-FFPE-ID-1530_2020-01-29_12-38-39.sky.zip

11 May 2020 16:30:49,546 INFO : 100% Done

11 May 2020 16:30:49,558 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80431/CPDR-FFPE-ID-1530_2020-01-29_12-38-39.sky.zip into the system

11 May 2020 16:30:49,558 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80436/CPDR-FFPE-ID-939_2020-01-29_12-39-50/CPDR-FFPE-ID-939.skyd into the system

11 May 2020 16:30:49,559 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80436/CPDR-FFPE-ID-939_2020-01-29_12-39-50/CPDR-FFPE-ID-939.skyd into the system

11 May 2020 16:30:49,559 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80436/CPDR-FFPE-ID-939_2020-01-29_12-39-50.sky.zip into the system

11 May 2020 16:30:49,563 INFO : Starting import from CPDR-FFPE-ID-939_2020-01-29_12-39-50.sky.zip

11 May 2020 16:30:49,570 INFO : Starting to import Skyline document from CPDR-FFPE-ID-939_2020-01-29_12-39-50.sky.zip

11 May 2020 16:30:49,583 INFO : Expanding CPDR-FFPE-ID-939.skyd

11 May 2020 16:30:49,961 INFO : Expanding CPDR-FFPE-ID-939.sky.view

11 May 2020 16:30:49,962 INFO : Expanding CPDR-FFPE-ID-939.sky

11 May 2020 16:30:49,972 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:30:49,976 INFO : 5% Done

11 May 2020 16:30:50,353 INFO : Inserting ANXA2

11 May 2020 16:30:50,363 INFO : 14% Done

11 May 2020 16:30:50,517 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:50,518 INFO : Inserting CAMKK2

11 May 2020 16:30:50,523 INFO : 21% Done

11 May 2020 16:30:50,674 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:50,674 INFO : Inserting CCND1

11 May 2020 16:30:50,678 INFO : 27% Done

11 May 2020 16:30:50,824 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:50,824 INFO : Inserting EGFR

11 May 2020 16:30:50,828 INFO : 33% Done

11 May 2020 16:30:50,933 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:50,933 INFO : Inserting ERG_pan

11 May 2020 16:30:50,937 INFO : 40% Done

11 May 2020 16:30:51,100 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:51,101 INFO : Inserting FOLH1

11 May 2020 16:30:51,103 INFO : 43% Done

11 May 2020 16:30:51,175 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:51,175 INFO : Inserting MMP9

11 May 2020 16:30:51,179 INFO : 50% Done

11 May 2020 16:30:51,328 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:51,328 INFO : Inserting MUC1

11 May 2020 16:30:51,330 INFO : 55% Done

11 May 2020 16:30:51,424 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:51,424 INFO : Inserting NCOA2

11 May 2020 16:30:51,427 INFO : 62% Done

11 May 2020 16:30:51,542 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:51,542 INFO : Inserting PSA

11 May 2020 16:30:51,545 INFO : 67% Done

11 May 2020 16:30:51,604 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:51,604 INFO : Inserting SMAD4

11 May 2020 16:30:51,607 INFO : 72% Done

11 May 2020 16:30:51,676 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:51,676 INFO : 73% Done

11 May 2020 16:30:51,677 INFO : Inserting SPINK1

11 May 2020 16:30:51,679 INFO : 77% Done

11 May 2020 16:30:51,743 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:51,743 INFO : 78% Done

11 May 2020 16:30:51,743 INFO : Inserting SPRC

11 May 2020 16:30:51,746 INFO : 83% Done

11 May 2020 16:30:51,819 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:51,819 INFO : Inserting TFF3

11 May 2020 16:30:51,822 INFO : 88% Done

11 May 2020 16:30:51,895 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:51,895 INFO : Inserting TGFB1

11 May 2020 16:30:51,897 INFO : 91% Done

11 May 2020 16:30:51,931 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:51,932 INFO : Inserting VEGFA

11 May 2020 16:30:51,935 INFO : 98% Done

11 May 2020 16:30:52,019 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:52,019 INFO : Done parsing Skyline document.

11 May 2020 16:30:52,021 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:30:52,036 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:30:52,082 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:30:52,099 INFO : Cleaning up temp tables

11 May 2020 16:30:52,109 INFO : Completed import of Skyline document from CPDR-FFPE-ID-939_2020-01-29_12-39-50.sky.zip

11 May 2020 16:30:52,110 INFO : 100% Done

11 May 2020 16:30:52,119 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80436/CPDR-FFPE-ID-939_2020-01-29_12-39-50.sky.zip into the system

11 May 2020 16:30:52,120 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80437/CPDR-FFPE-ID-928_2020-01-29_12-40-07/CPDR-FFPE-ID-928.skyd into the system

11 May 2020 16:30:52,121 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80437/CPDR-FFPE-ID-928_2020-01-29_12-40-07/CPDR-FFPE-ID-928.skyd into the system

11 May 2020 16:30:52,121 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80437/CPDR-FFPE-ID-928_2020-01-29_12-40-07.sky.zip into the system

11 May 2020 16:30:52,124 INFO : Starting import from CPDR-FFPE-ID-928_2020-01-29_12-40-07.sky.zip

11 May 2020 16:30:52,128 INFO : Starting to import Skyline document from CPDR-FFPE-ID-928_2020-01-29_12-40-07.sky.zip

11 May 2020 16:30:52,137 INFO : Expanding CPDR-FFPE-ID-928.skyd

11 May 2020 16:30:52,397 INFO : Expanding CPDR-FFPE-ID-928.sky.view

11 May 2020 16:30:52,398 INFO : Expanding CPDR-FFPE-ID-928.sky

11 May 2020 16:30:52,406 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:30:52,408 INFO : 6% Done

11 May 2020 16:30:52,589 INFO : Inserting ANXA2

11 May 2020 16:30:52,596 INFO : 14% Done

11 May 2020 16:30:52,700 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:52,700 INFO : Inserting CAMKK2

11 May 2020 16:30:52,703 INFO : 21% Done

11 May 2020 16:30:52,810 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:52,810 INFO : Inserting CCND1

11 May 2020 16:30:52,813 INFO : 27% Done

11 May 2020 16:30:52,912 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:52,912 INFO : Inserting EGFR

11 May 2020 16:30:52,915 INFO : 34% Done

11 May 2020 16:30:52,997 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:52,998 INFO : Inserting ERG_pan

11 May 2020 16:30:53,000 INFO : 40% Done

11 May 2020 16:30:53,088 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:53,088 INFO : Inserting FOLH1

11 May 2020 16:30:53,090 INFO : 44% Done

11 May 2020 16:30:53,161 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:53,161 INFO : Inserting MMP9

11 May 2020 16:30:53,164 INFO : 53% Done

11 May 2020 16:30:53,288 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:53,288 INFO : 54% Done

11 May 2020 16:30:53,288 INFO : Inserting MUC1

11 May 2020 16:30:53,291 INFO : 60% Done

11 May 2020 16:30:53,378 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:53,378 INFO : Inserting NCOA2

11 May 2020 16:30:53,381 INFO : 65% Done

11 May 2020 16:30:53,471 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:53,471 INFO : Inserting PSA

11 May 2020 16:30:53,473 INFO : 70% Done

11 May 2020 16:30:53,543 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:53,543 INFO : Inserting SMAD4

11 May 2020 16:30:53,546 INFO : 75% Done

11 May 2020 16:30:53,619 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:53,619 INFO : Inserting SPINK1

11 May 2020 16:30:53,622 INFO : 79% Done

11 May 2020 16:30:53,695 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:53,695 INFO : Inserting SPRC

11 May 2020 16:30:53,697 INFO : 85% Done

11 May 2020 16:30:53,795 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:53,795 INFO : Inserting TFF3

11 May 2020 16:30:53,797 INFO : 89% Done

11 May 2020 16:30:53,866 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:53,866 INFO : Inserting TGFB1

11 May 2020 16:30:53,868 INFO : 91% Done

11 May 2020 16:30:53,900 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:53,900 INFO : Inserting VEGFA

11 May 2020 16:30:53,903 INFO : 98% Done

11 May 2020 16:30:54,007 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:54,007 INFO : Done parsing Skyline document.

11 May 2020 16:30:54,009 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:30:54,039 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:30:54,109 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:30:54,134 INFO : Cleaning up temp tables

11 May 2020 16:30:54,605 INFO : Completed import of Skyline document from CPDR-FFPE-ID-928_2020-01-29_12-40-07.sky.zip

11 May 2020 16:30:54,607 INFO : 100% Done

11 May 2020 16:30:54,619 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80437/CPDR-FFPE-ID-928_2020-01-29_12-40-07.sky.zip into the system

11 May 2020 16:30:54,620 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80439/CPDR-FFPE-ID-1442_2020-01-29_12-40-36/CPDR-FFPE-ID-1442.skyd into the system

11 May 2020 16:30:54,621 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80439/CPDR-FFPE-ID-1442_2020-01-29_12-40-36/CPDR-FFPE-ID-1442.skyd into the system

11 May 2020 16:30:54,621 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80439/CPDR-FFPE-ID-1442_2020-01-29_12-40-36.sky.zip into the system

11 May 2020 16:30:54,626 INFO : Starting import from CPDR-FFPE-ID-1442_2020-01-29_12-40-36.sky.zip

11 May 2020 16:30:54,634 INFO : Starting to import Skyline document from CPDR-FFPE-ID-1442_2020-01-29_12-40-36.sky.zip

11 May 2020 16:30:54,642 INFO : Expanding CPDR-FFPE-ID-1442.skyd

11 May 2020 16:30:54,849 INFO : Expanding CPDR-FFPE-ID-1442.sky.view

11 May 2020 16:30:54,850 INFO : Expanding CPDR-FFPE-ID-1442.sky

11 May 2020 16:30:54,858 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:30:54,861 INFO : 5% Done

11 May 2020 16:30:55,124 INFO : Inserting ANXA2

11 May 2020 16:30:55,132 INFO : 13% Done

11 May 2020 16:30:55,234 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:55,234 INFO : Inserting CAMKK2

11 May 2020 16:30:55,237 INFO : 20% Done

11 May 2020 16:30:55,362 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:55,363 INFO : 21% Done

11 May 2020 16:30:55,363 INFO : Inserting CCND1

11 May 2020 16:30:55,365 INFO : 26% Done

11 May 2020 16:30:55,460 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:55,461 INFO : Inserting EGFR

11 May 2020 16:30:55,463 INFO : 32% Done

11 May 2020 16:30:55,538 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:55,538 INFO : Inserting ERG_pan

11 May 2020 16:30:55,541 INFO : 40% Done

11 May 2020 16:30:55,598 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:55,598 INFO : Inserting FOLH1

11 May 2020 16:30:55,600 INFO : 43% Done

11 May 2020 16:30:55,634 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:55,634 INFO : Inserting MMP9

11 May 2020 16:30:55,637 INFO : 51% Done

11 May 2020 16:30:55,697 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:55,697 INFO : Inserting MUC1

11 May 2020 16:30:55,699 INFO : 56% Done

11 May 2020 16:30:55,738 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:55,738 INFO : Inserting NCOA2

11 May 2020 16:30:55,741 INFO : 63% Done

11 May 2020 16:30:55,811 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:55,811 INFO : 65% Done

11 May 2020 16:30:55,811 INFO : Inserting PSA

11 May 2020 16:30:55,813 INFO : 68% Done

11 May 2020 16:30:55,903 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:55,903 INFO : Inserting SMAD4

11 May 2020 16:30:55,905 INFO : 74% Done

11 May 2020 16:30:55,953 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:55,953 INFO : Inserting SPINK1

11 May 2020 16:30:55,955 INFO : 78% Done

11 May 2020 16:30:55,994 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:55,994 INFO : Inserting SPRC

11 May 2020 16:30:55,996 INFO : 84% Done

11 May 2020 16:30:56,054 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:56,054 INFO : Inserting TFF3

11 May 2020 16:30:56,056 INFO : 89% Done

11 May 2020 16:30:56,110 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:56,110 INFO : Inserting TGFB1

11 May 2020 16:30:56,111 INFO : 90% Done

11 May 2020 16:30:56,137 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:56,137 INFO : Inserting VEGFA

11 May 2020 16:30:56,139 INFO : 98% Done

11 May 2020 16:30:56,239 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:56,239 INFO : Done parsing Skyline document.

11 May 2020 16:30:56,240 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:30:56,268 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:30:56,333 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:30:56,357 INFO : Cleaning up temp tables

11 May 2020 16:30:56,364 INFO : Completed import of Skyline document from CPDR-FFPE-ID-1442_2020-01-29_12-40-36.sky.zip

11 May 2020 16:30:56,365 INFO : 100% Done

11 May 2020 16:30:56,375 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80439/CPDR-FFPE-ID-1442_2020-01-29_12-40-36.sky.zip into the system

11 May 2020 16:30:56,375 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80441/CPDR-FFPE-ID-808_2020-01-29_12-41-02/CPDR-FFPE-ID-808.skyd into the system

11 May 2020 16:30:56,376 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80441/CPDR-FFPE-ID-808_2020-01-29_12-41-02/CPDR-FFPE-ID-808.skyd into the system

11 May 2020 16:30:56,376 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80441/CPDR-FFPE-ID-808_2020-01-29_12-41-02.sky.zip into the system

11 May 2020 16:30:56,379 INFO : Starting import from CPDR-FFPE-ID-808_2020-01-29_12-41-02.sky.zip

11 May 2020 16:30:56,383 INFO : Starting to import Skyline document from CPDR-FFPE-ID-808_2020-01-29_12-41-02.sky.zip

11 May 2020 16:30:56,390 INFO : Expanding CPDR-FFPE-ID-808.skyd

11 May 2020 16:30:56,569 INFO : Expanding CPDR-FFPE-ID-808.sky.view

11 May 2020 16:30:56,570 INFO : Expanding CPDR-FFPE-ID-808.sky

11 May 2020 16:30:56,579 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:30:56,583 INFO : 5% Done

11 May 2020 16:30:56,928 INFO : Inserting ANXA2

11 May 2020 16:30:56,936 INFO : 13% Done

11 May 2020 16:30:57,078 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:57,079 INFO : Inserting CAMKK2

11 May 2020 16:30:57,082 INFO : 21% Done

11 May 2020 16:30:57,225 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:57,226 INFO : Inserting CCND1

11 May 2020 16:30:57,229 INFO : 27% Done

11 May 2020 16:30:57,378 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:57,378 INFO : Inserting EGFR

11 May 2020 16:30:57,381 INFO : 33% Done

11 May 2020 16:30:57,488 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:57,489 INFO : Inserting ERG_pan

11 May 2020 16:30:57,492 INFO : 40% Done

11 May 2020 16:30:57,619 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:57,620 INFO : Inserting FOLH1

11 May 2020 16:30:57,622 INFO : 42% Done

11 May 2020 16:30:57,684 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:57,685 INFO : Inserting MMP9

11 May 2020 16:30:57,688 INFO : 49% Done

11 May 2020 16:30:57,818 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:57,818 INFO : Inserting MUC1

11 May 2020 16:30:57,821 INFO : 53% Done

11 May 2020 16:30:57,903 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:57,903 INFO : Inserting NCOA2

11 May 2020 16:30:57,906 INFO : 60% Done

11 May 2020 16:30:58,052 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:58,053 INFO : Inserting PSA

11 May 2020 16:30:58,056 INFO : 66% Done

11 May 2020 16:30:58,171 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:58,172 INFO : Inserting SMAD4

11 May 2020 16:30:58,175 INFO : 72% Done

11 May 2020 16:30:58,296 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:58,297 INFO : Inserting SPINK1

11 May 2020 16:30:58,300 INFO : 77% Done

11 May 2020 16:30:58,424 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:58,424 INFO : Inserting SPRC

11 May 2020 16:30:58,427 INFO : 83% Done

11 May 2020 16:30:58,546 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:58,546 INFO : Inserting TFF3

11 May 2020 16:30:58,550 INFO : 88% Done

11 May 2020 16:30:58,685 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:58,686 INFO : Inserting TGFB1

11 May 2020 16:30:58,688 INFO : 90% Done

11 May 2020 16:30:58,731 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:58,731 INFO : Inserting VEGFA

11 May 2020 16:30:58,735 INFO : 98% Done

11 May 2020 16:30:58,891 DEBUG: Total peptides inserted: 1

11 May 2020 16:30:58,891 INFO : Done parsing Skyline document.

11 May 2020 16:30:58,893 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:30:58,927 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:30:59,028 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:30:59,067 INFO : Cleaning up temp tables

11 May 2020 16:30:59,554 INFO : Completed import of Skyline document from CPDR-FFPE-ID-808_2020-01-29_12-41-02.sky.zip

11 May 2020 16:30:59,556 INFO : 100% Done

11 May 2020 16:30:59,569 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80441/CPDR-FFPE-ID-808_2020-01-29_12-41-02.sky.zip into the system

11 May 2020 16:30:59,569 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80459/CPDR-FFPE-ID-659.skyd into the system

11 May 2020 16:30:59,571 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80459/CPDR-FFPE-ID-659.skyd into the system

11 May 2020 16:30:59,571 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80459/CPDR-FFPE-ID-659_2020-01-29_13-41-39.sky.zip into the system

11 May 2020 16:30:59,574 INFO : Starting import from CPDR-FFPE-ID-659_2020-01-29_13-41-39.sky.zip

11 May 2020 16:30:59,582 INFO : Starting to import Skyline document from CPDR-FFPE-ID-659_2020-01-29_13-41-39.sky.zip

11 May 2020 16:30:59,582 INFO : Expanding CPDR-FFPE-ID-659.skyd

11 May 2020 16:30:59,890 INFO : Expanding CPDR-FFPE-ID-659.sky.view

11 May 2020 16:30:59,891 INFO : Expanding CPDR-FFPE-ID-659.sky

11 May 2020 16:30:59,904 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 16:30:59,907 INFO : 5% Done

11 May 2020 16:31:00,185 INFO : Inserting ANXA2

11 May 2020 16:31:00,194 INFO : 15% Done

11 May 2020 16:31:00,319 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:00,319 INFO : Inserting CAMKK2

11 May 2020 16:31:00,322 INFO : 21% Done

11 May 2020 16:31:00,406 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:00,406 INFO : Inserting CCND1

11 May 2020 16:31:00,409 INFO : 26% Done

11 May 2020 16:31:00,488 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:00,488 INFO : Inserting EGFR

11 May 2020 16:31:00,490 INFO : 32% Done

11 May 2020 16:31:00,571 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:00,571 INFO : Inserting ERG_pan

11 May 2020 16:31:00,574 INFO : 40% Done

11 May 2020 16:31:00,690 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:00,690 INFO : Inserting FOLH1

11 May 2020 16:31:00,692 INFO : 43% Done

11 May 2020 16:31:00,746 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:00,746 INFO : 45% Done

11 May 2020 16:31:00,746 INFO : Inserting MMP9

11 May 2020 16:31:00,749 INFO : 52% Done

11 May 2020 16:31:00,857 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:00,857 INFO : Inserting MUC1

11 May 2020 16:31:00,859 INFO : 56% Done

11 May 2020 16:31:00,934 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:00,934 INFO : 57% Done

11 May 2020 16:31:00,934 INFO : Inserting NCOA2

11 May 2020 16:31:00,936 INFO : 63% Done

11 May 2020 16:31:01,021 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:01,022 INFO : Inserting PSA

11 May 2020 16:31:01,024 INFO : 68% Done

11 May 2020 16:31:01,084 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:01,084 INFO : Inserting SMAD4

11 May 2020 16:31:01,087 INFO : 74% Done

11 May 2020 16:31:01,171 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:01,172 INFO : Inserting SPINK1

11 May 2020 16:31:01,174 INFO : 79% Done

11 May 2020 16:31:01,251 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:01,251 INFO : Inserting SPRC

11 May 2020 16:31:01,253 INFO : 83% Done

11 May 2020 16:31:01,327 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:01,327 INFO : Inserting TFF3

11 May 2020 16:31:01,329 INFO : 88% Done

11 May 2020 16:31:01,391 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:01,392 INFO : Inserting TGFB1

11 May 2020 16:31:01,393 INFO : 90% Done

11 May 2020 16:31:01,419 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:01,419 INFO : Inserting VEGFA

11 May 2020 16:31:01,422 INFO : 98% Done

11 May 2020 16:31:01,540 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:01,540 INFO : Done parsing Skyline document.

11 May 2020 16:31:01,542 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:31:01,572 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:31:01,642 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:31:01,668 INFO : Cleaning up temp tables

11 May 2020 16:31:01,671 INFO : Completed import of Skyline document from CPDR-FFPE-ID-659_2020-01-29_13-41-39.sky.zip

11 May 2020 16:31:01,680 INFO : 100% Done

11 May 2020 16:31:01,691 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80459/CPDR-FFPE-ID-659_2020-01-29_13-41-39.sky.zip into the system

11 May 2020 16:31:01,692 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80460/CPDR-FFPE-ID-675_2020-01-29_14-30-10/CPDR-FFPE-ID-675.skyd into the system

11 May 2020 16:31:01,694 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80460/CPDR-FFPE-ID-675_2020-01-29_14-30-10/CPDR-FFPE-ID-675.skyd into the system

11 May 2020 16:31:01,694 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80460/CPDR-FFPE-ID-675_2020-01-29_14-30-10.sky.zip into the system

11 May 2020 16:31:01,698 INFO : Starting import from CPDR-FFPE-ID-675_2020-01-29_14-30-10.sky.zip

11 May 2020 16:31:01,705 INFO : Starting to import Skyline document from CPDR-FFPE-ID-675_2020-01-29_14-30-10.sky.zip

11 May 2020 16:31:01,714 INFO : Expanding CPDR-FFPE-ID-675.skyd

11 May 2020 16:31:01,976 INFO : Expanding CPDR-FFPE-ID-675.sky.view

11 May 2020 16:31:01,977 INFO : Expanding CPDR-FFPE-ID-675.sky

11 May 2020 16:31:01,986 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 16:31:01,990 INFO : 5% Done

11 May 2020 16:31:02,254 INFO : Inserting ANXA2

11 May 2020 16:31:02,264 INFO : 14% Done

11 May 2020 16:31:02,407 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:02,407 INFO : Inserting CAMKK2

11 May 2020 16:31:02,410 INFO : 23% Done

11 May 2020 16:31:02,556 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:02,557 INFO : Inserting CCND1

11 May 2020 16:31:02,560 INFO : 28% Done

11 May 2020 16:31:02,663 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:02,663 INFO : Inserting EGFR

11 May 2020 16:31:02,666 INFO : 34% Done

11 May 2020 16:31:02,772 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:02,772 INFO : Inserting ERG_pan

11 May 2020 16:31:02,775 INFO : 41% Done

11 May 2020 16:31:02,910 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:02,910 INFO : Inserting FOLH1

11 May 2020 16:31:02,912 INFO : 45% Done

11 May 2020 16:31:02,977 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:02,977 INFO : Inserting MMP9

11 May 2020 16:31:02,980 INFO : 53% Done

11 May 2020 16:31:03,110 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:03,110 INFO : Inserting MUC1

11 May 2020 16:31:03,112 INFO : 58% Done

11 May 2020 16:31:03,194 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:03,194 INFO : Inserting NCOA2

11 May 2020 16:31:03,198 INFO : 65% Done

11 May 2020 16:31:03,304 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:03,304 INFO : Inserting PSA

11 May 2020 16:31:03,306 INFO : 69% Done

11 May 2020 16:31:03,376 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:03,376 INFO : Inserting SMAD4

11 May 2020 16:31:03,379 INFO : 74% Done

11 May 2020 16:31:03,487 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:03,488 INFO : Inserting SPINK1

11 May 2020 16:31:03,490 INFO : 80% Done

11 May 2020 16:31:03,586 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:03,587 INFO : Inserting SPRC

11 May 2020 16:31:03,589 INFO : 85% Done

11 May 2020 16:31:03,723 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:03,723 INFO : Inserting TFF3

11 May 2020 16:31:03,725 INFO : 89% Done

11 May 2020 16:31:03,793 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:03,793 INFO : Inserting TGFB1

11 May 2020 16:31:03,795 INFO : 91% Done

11 May 2020 16:31:03,818 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:03,819 INFO : Inserting VEGFA

11 May 2020 16:31:03,822 INFO : 98% Done

11 May 2020 16:31:03,946 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:03,946 INFO : Done parsing Skyline document.

11 May 2020 16:31:03,948 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:31:03,979 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:31:04,083 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:31:04,115 INFO : Cleaning up temp tables

11 May 2020 16:31:04,639 INFO : Completed import of Skyline document from CPDR-FFPE-ID-675_2020-01-29_14-30-10.sky.zip

11 May 2020 16:31:04,641 INFO : 100% Done

11 May 2020 16:31:04,653 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80460/CPDR-FFPE-ID-675_2020-01-29_14-30-10.sky.zip into the system

11 May 2020 16:31:04,653 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80465/CPDR-FFPE-ID-835_2020-01-29_14-45-16/CPDR-FFPE-ID-835.skyd into the system

11 May 2020 16:31:04,654 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80465/CPDR-FFPE-ID-835_2020-01-29_14-45-16/CPDR-FFPE-ID-835.skyd into the system

11 May 2020 16:31:04,654 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80465/CPDR-FFPE-ID-835_2020-01-29_14-45-16.sky.zip into the system

11 May 2020 16:31:04,658 INFO : Starting import from CPDR-FFPE-ID-835_2020-01-29_14-45-16.sky.zip

11 May 2020 16:31:04,665 INFO : Starting to import Skyline document from CPDR-FFPE-ID-835_2020-01-29_14-45-16.sky.zip

11 May 2020 16:31:04,675 INFO : Expanding CPDR-FFPE-ID-835.skyd

11 May 2020 16:31:04,970 INFO : Expanding CPDR-FFPE-ID-835.sky.view

11 May 2020 16:31:04,970 INFO : Expanding CPDR-FFPE-ID-835.sky

11 May 2020 16:31:04,979 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 16:31:04,982 INFO : 5% Done

11 May 2020 16:31:05,410 INFO : Inserting ANXA2

11 May 2020 16:31:05,419 INFO : 14% Done

11 May 2020 16:31:05,562 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:05,562 INFO : Inserting CAMKK2

11 May 2020 16:31:05,566 INFO : 22% Done

11 May 2020 16:31:05,708 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:05,708 INFO : Inserting CCND1

11 May 2020 16:31:05,711 INFO : 28% Done

11 May 2020 16:31:05,824 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:05,825 INFO : Inserting EGFR

11 May 2020 16:31:05,827 INFO : 34% Done

11 May 2020 16:31:05,934 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:05,934 INFO : Inserting ERG_pan

11 May 2020 16:31:05,937 INFO : 41% Done

11 May 2020 16:31:06,045 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:06,045 INFO : Inserting FOLH1

11 May 2020 16:31:06,046 INFO : 43% Done

11 May 2020 16:31:06,097 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:06,097 INFO : Inserting MMP9

11 May 2020 16:31:06,099 INFO : 50% Done

11 May 2020 16:31:06,199 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:06,199 INFO : Inserting MUC1

11 May 2020 16:31:06,201 INFO : 55% Done

11 May 2020 16:31:06,266 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:06,267 INFO : 56% Done

11 May 2020 16:31:06,267 INFO : Inserting NCOA2

11 May 2020 16:31:06,269 INFO : 63% Done

11 May 2020 16:31:06,423 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:06,423 INFO : Inserting PSA

11 May 2020 16:31:06,425 INFO : 68% Done

11 May 2020 16:31:06,487 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:06,487 INFO : Inserting SMAD4

11 May 2020 16:31:06,489 INFO : 73% Done

11 May 2020 16:31:06,587 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:06,587 INFO : Inserting SPINK1

11 May 2020 16:31:06,591 INFO : 78% Done

11 May 2020 16:31:06,691 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:06,691 INFO : Inserting SPRC

11 May 2020 16:31:06,694 INFO : 84% Done

11 May 2020 16:31:06,804 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:06,805 INFO : Inserting TFF3

11 May 2020 16:31:06,807 INFO : 89% Done

11 May 2020 16:31:06,888 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:06,888 INFO : Inserting TGFB1

11 May 2020 16:31:06,890 INFO : 91% Done

11 May 2020 16:31:06,924 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:06,924 INFO : Inserting VEGFA

11 May 2020 16:31:06,927 INFO : 98% Done

11 May 2020 16:31:07,080 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:07,081 INFO : Done parsing Skyline document.

11 May 2020 16:31:07,083 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:31:07,114 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:31:07,220 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:31:07,250 INFO : Cleaning up temp tables

11 May 2020 16:31:07,254 INFO : Completed import of Skyline document from CPDR-FFPE-ID-835_2020-01-29_14-45-16.sky.zip

11 May 2020 16:31:07,262 INFO : 100% Done

11 May 2020 16:31:07,273 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80465/CPDR-FFPE-ID-835_2020-01-29_14-45-16.sky.zip into the system

11 May 2020 16:31:07,273 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80466/CPDR-FFPE-ID-837_2020-01-29_14-45-59/CPDR-FFPE-ID-837.skyd into the system

11 May 2020 16:31:07,274 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80466/CPDR-FFPE-ID-837_2020-01-29_14-45-59/CPDR-FFPE-ID-837.skyd into the system

11 May 2020 16:31:07,274 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80466/CPDR-FFPE-ID-837_2020-01-29_14-45-59.sky.zip into the system

11 May 2020 16:31:07,278 INFO : Starting import from CPDR-FFPE-ID-837_2020-01-29_14-45-59.sky.zip

11 May 2020 16:31:07,284 INFO : Starting to import Skyline document from CPDR-FFPE-ID-837_2020-01-29_14-45-59.sky.zip

11 May 2020 16:31:07,292 INFO : Expanding CPDR-FFPE-ID-837.skyd

11 May 2020 16:31:07,510 INFO : Expanding CPDR-FFPE-ID-837.sky.view

11 May 2020 16:31:07,510 INFO : Expanding CPDR-FFPE-ID-837.sky

11 May 2020 16:31:07,519 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 16:31:07,522 INFO : 5% Done

11 May 2020 16:31:07,729 INFO : Inserting ANXA2

11 May 2020 16:31:07,737 INFO : 13% Done

11 May 2020 16:31:07,859 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:07,860 INFO : 14% Done

11 May 2020 16:31:07,860 INFO : Inserting CAMKK2

11 May 2020 16:31:07,863 INFO : 21% Done

11 May 2020 16:31:07,976 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:07,976 INFO : Inserting CCND1

11 May 2020 16:31:07,978 INFO : 26% Done

11 May 2020 16:31:08,067 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:08,068 INFO : Inserting EGFR

11 May 2020 16:31:08,070 INFO : 32% Done

11 May 2020 16:31:08,157 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:08,157 INFO : Inserting ERG_pan

11 May 2020 16:31:08,160 INFO : 41% Done

11 May 2020 16:31:08,284 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:08,284 INFO : Inserting FOLH1

11 May 2020 16:31:08,286 INFO : 44% Done

11 May 2020 16:31:08,346 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:08,346 INFO : 46% Done

11 May 2020 16:31:08,346 INFO : Inserting MMP9

11 May 2020 16:31:08,348 INFO : 52% Done

11 May 2020 16:31:08,453 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:08,454 INFO : 53% Done

11 May 2020 16:31:08,454 INFO : Inserting MUC1

11 May 2020 16:31:08,456 INFO : 58% Done

11 May 2020 16:31:08,532 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:08,532 INFO : Inserting NCOA2

11 May 2020 16:31:08,535 INFO : 63% Done

11 May 2020 16:31:08,633 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:08,634 INFO : 65% Done

11 May 2020 16:31:08,634 INFO : Inserting PSA

11 May 2020 16:31:08,636 INFO : 68% Done

11 May 2020 16:31:08,715 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:08,715 INFO : Inserting SMAD4

11 May 2020 16:31:08,718 INFO : 74% Done

11 May 2020 16:31:08,830 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:08,830 INFO : Inserting SPINK1

11 May 2020 16:31:08,833 INFO : 78% Done

11 May 2020 16:31:08,929 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:08,929 INFO : 79% Done

11 May 2020 16:31:08,929 INFO : Inserting SPRC

11 May 2020 16:31:08,932 INFO : 84% Done

11 May 2020 16:31:09,029 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:09,029 INFO : Inserting TFF3

11 May 2020 16:31:09,031 INFO : 89% Done

11 May 2020 16:31:09,099 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:09,099 INFO : Inserting TGFB1

11 May 2020 16:31:09,100 INFO : 91% Done

11 May 2020 16:31:09,132 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:09,132 INFO : Inserting VEGFA

11 May 2020 16:31:09,135 INFO : 98% Done

11 May 2020 16:31:09,243 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:09,243 INFO : Done parsing Skyline document.

11 May 2020 16:31:09,245 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:31:09,274 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:31:09,386 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:31:09,411 INFO : Cleaning up temp tables

11 May 2020 16:31:09,905 INFO : Completed import of Skyline document from CPDR-FFPE-ID-837_2020-01-29_14-45-59.sky.zip

11 May 2020 16:31:09,907 INFO : 100% Done

11 May 2020 16:31:09,919 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80466/CPDR-FFPE-ID-837_2020-01-29_14-45-59.sky.zip into the system

11 May 2020 16:31:09,919 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80475/CPDR-FFPE-ID-1059_2020-01-29_14-51-26/CPDR-FFPE-ID-1059.skyd into the system

11 May 2020 16:31:09,920 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80475/CPDR-FFPE-ID-1059_2020-01-29_14-51-26/CPDR-FFPE-ID-1059.skyd into the system

11 May 2020 16:31:09,920 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80475/CPDR-FFPE-ID-1059_2020-01-29_14-51-26.sky.zip into the system

11 May 2020 16:31:09,925 INFO : Starting import from CPDR-FFPE-ID-1059_2020-01-29_14-51-26.sky.zip

11 May 2020 16:31:09,932 INFO : Starting to import Skyline document from CPDR-FFPE-ID-1059_2020-01-29_14-51-26.sky.zip

11 May 2020 16:31:09,943 INFO : Expanding CPDR-FFPE-ID-1059.skyd

11 May 2020 16:31:10,184 INFO : Expanding CPDR-FFPE-ID-1059.sky.view

11 May 2020 16:31:10,185 INFO : Expanding CPDR-FFPE-ID-1059.sky

11 May 2020 16:31:10,193 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 16:31:10,197 INFO : 6% Done

11 May 2020 16:31:10,476 INFO : Inserting ANXA2

11 May 2020 16:31:10,484 INFO : 13% Done

11 May 2020 16:31:10,607 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:10,607 INFO : Inserting CAMKK2

11 May 2020 16:31:10,610 INFO : 21% Done

11 May 2020 16:31:10,729 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:10,729 INFO : Inserting CCND1

11 May 2020 16:31:10,731 INFO : 27% Done

11 May 2020 16:31:10,834 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:10,834 INFO : Inserting EGFR

11 May 2020 16:31:10,837 INFO : 34% Done

11 May 2020 16:31:10,931 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:10,931 INFO : Inserting ERG_pan

11 May 2020 16:31:10,934 INFO : 42% Done

11 May 2020 16:31:11,059 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:11,059 INFO : Inserting FOLH1

11 May 2020 16:31:11,061 INFO : 45% Done

11 May 2020 16:31:11,122 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:11,122 INFO : Inserting MMP9

11 May 2020 16:31:11,125 INFO : 53% Done

11 May 2020 16:31:11,223 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:11,223 INFO : Inserting MUC1

11 May 2020 16:31:11,226 INFO : 57% Done

11 May 2020 16:31:11,299 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:11,299 INFO : Inserting NCOA2

11 May 2020 16:31:11,302 INFO : 65% Done

11 May 2020 16:31:11,413 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:11,414 INFO : Inserting PSA

11 May 2020 16:31:11,416 INFO : 69% Done

11 May 2020 16:31:11,474 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:11,474 INFO : Inserting SMAD4

11 May 2020 16:31:11,477 INFO : 74% Done

11 May 2020 16:31:11,567 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:11,568 INFO : Inserting SPINK1

11 May 2020 16:31:11,570 INFO : 80% Done

11 May 2020 16:31:11,653 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:11,653 INFO : Inserting SPRC

11 May 2020 16:31:11,655 INFO : 84% Done

11 May 2020 16:31:11,733 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:11,733 INFO : Inserting TFF3

11 May 2020 16:31:11,735 INFO : 89% Done

11 May 2020 16:31:11,792 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:11,792 INFO : Inserting TGFB1

11 May 2020 16:31:11,794 INFO : 91% Done

11 May 2020 16:31:11,822 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:11,822 INFO : Inserting VEGFA

11 May 2020 16:31:11,825 INFO : 98% Done

11 May 2020 16:31:11,954 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:11,954 INFO : Done parsing Skyline document.

11 May 2020 16:31:11,957 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:31:11,986 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:31:12,123 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:31:12,150 INFO : Cleaning up temp tables

11 May 2020 16:31:12,159 INFO : Completed import of Skyline document from CPDR-FFPE-ID-1059_2020-01-29_14-51-26.sky.zip

11 May 2020 16:31:12,161 INFO : 100% Done

11 May 2020 16:31:12,172 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80475/CPDR-FFPE-ID-1059_2020-01-29_14-51-26.sky.zip into the system

11 May 2020 16:31:12,172 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80476/CPDR-FFPE-ID-1217_2020-01-29_14-53-36/CPDR-FFPE-ID-1217.skyd into the system

11 May 2020 16:31:12,173 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80476/CPDR-FFPE-ID-1217_2020-01-29_14-53-36/CPDR-FFPE-ID-1217.skyd into the system

11 May 2020 16:31:12,174 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80476/CPDR-FFPE-ID-1217_2020-01-29_14-53-36.sky.zip into the system

11 May 2020 16:31:12,177 INFO : Starting import from CPDR-FFPE-ID-1217_2020-01-29_14-53-36.sky.zip

11 May 2020 16:31:12,184 INFO : Starting to import Skyline document from CPDR-FFPE-ID-1217_2020-01-29_14-53-36.sky.zip

11 May 2020 16:31:12,193 INFO : Expanding CPDR-FFPE-ID-1217.skyd

11 May 2020 16:31:12,418 INFO : Expanding CPDR-FFPE-ID-1217.sky.view

11 May 2020 16:31:12,419 INFO : Expanding CPDR-FFPE-ID-1217.sky

11 May 2020 16:31:12,428 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 16:31:12,431 INFO : 5% Done

11 May 2020 16:31:12,665 INFO : Inserting ANXA2

11 May 2020 16:31:12,673 INFO : 14% Done

11 May 2020 16:31:12,796 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:12,797 INFO : Inserting CAMKK2

11 May 2020 16:31:12,799 INFO : 20% Done

11 May 2020 16:31:12,881 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:12,881 INFO : Inserting CCND1

11 May 2020 16:31:12,884 INFO : 27% Done

11 May 2020 16:31:12,992 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:12,992 INFO : Inserting EGFR

11 May 2020 16:31:12,994 INFO : 32% Done

11 May 2020 16:31:13,083 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:13,083 INFO : Inserting ERG_pan

11 May 2020 16:31:13,085 INFO : 39% Done

11 May 2020 16:31:13,187 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:13,188 INFO : Inserting FOLH1

11 May 2020 16:31:13,190 INFO : 43% Done

11 May 2020 16:31:13,245 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:13,245 INFO : Inserting MMP9

11 May 2020 16:31:13,248 INFO : 50% Done

11 May 2020 16:31:13,343 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:13,344 INFO : Inserting MUC1

11 May 2020 16:31:13,346 INFO : 54% Done

11 May 2020 16:31:13,415 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:13,415 INFO : Inserting NCOA2

11 May 2020 16:31:13,418 INFO : 62% Done

11 May 2020 16:31:13,535 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:13,535 INFO : Inserting PSA

11 May 2020 16:31:13,538 INFO : 66% Done

11 May 2020 16:31:13,606 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:13,606 INFO : Inserting SMAD4

11 May 2020 16:31:13,609 INFO : 73% Done

11 May 2020 16:31:13,701 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:13,702 INFO : Inserting SPINK1

11 May 2020 16:31:13,704 INFO : 78% Done

11 May 2020 16:31:13,794 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:13,794 INFO : Inserting SPRC

11 May 2020 16:31:13,797 INFO : 83% Done

11 May 2020 16:31:13,883 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:13,883 INFO : Inserting TFF3

11 May 2020 16:31:13,886 INFO : 88% Done

11 May 2020 16:31:13,959 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:13,959 INFO : 89% Done

11 May 2020 16:31:13,960 INFO : Inserting TGFB1

11 May 2020 16:31:13,961 INFO : 90% Done

11 May 2020 16:31:13,995 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:13,995 INFO : Inserting VEGFA

11 May 2020 16:31:13,998 INFO : 98% Done

11 May 2020 16:31:14,124 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:14,124 INFO : Done parsing Skyline document.

11 May 2020 16:31:14,127 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:31:14,156 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:31:14,227 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:31:14,254 INFO : Cleaning up temp tables

11 May 2020 16:31:14,742 INFO : Completed import of Skyline document from CPDR-FFPE-ID-1217_2020-01-29_14-53-36.sky.zip

11 May 2020 16:31:14,743 INFO : 100% Done

11 May 2020 16:31:14,755 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80476/CPDR-FFPE-ID-1217_2020-01-29_14-53-36.sky.zip into the system

11 May 2020 16:31:14,756 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80462/CPDR-FFPE-ID-726_2020-01-29_14-42-29/CPDR-FFPE-ID-726.skyd into the system

11 May 2020 16:31:14,757 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80462/CPDR-FFPE-ID-726_2020-01-29_14-42-29/CPDR-FFPE-ID-726.skyd into the system

11 May 2020 16:31:14,757 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80462/CPDR-FFPE-ID-726_2020-01-29_14-42-29.sky.zip into the system

11 May 2020 16:31:14,761 INFO : Starting import from CPDR-FFPE-ID-726_2020-01-29_14-42-29.sky.zip

11 May 2020 16:31:14,768 INFO : Starting to import Skyline document from CPDR-FFPE-ID-726_2020-01-29_14-42-29.sky.zip

11 May 2020 16:31:14,780 INFO : Expanding CPDR-FFPE-ID-726.skyd

11 May 2020 16:31:15,081 INFO : Expanding CPDR-FFPE-ID-726.sky.view

11 May 2020 16:31:15,082 INFO : Expanding CPDR-FFPE-ID-726.sky

11 May 2020 16:31:15,091 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 16:31:15,095 INFO : 5% Done

11 May 2020 16:31:15,363 INFO : Inserting ANXA2

11 May 2020 16:31:15,372 INFO : 14% Done

11 May 2020 16:31:15,508 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:15,508 INFO : Inserting CAMKK2

11 May 2020 16:31:15,512 INFO : 23% Done

11 May 2020 16:31:15,656 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:15,656 INFO : Inserting CCND1

11 May 2020 16:31:15,659 INFO : 29% Done

11 May 2020 16:31:15,781 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:15,781 INFO : Inserting EGFR

11 May 2020 16:31:15,784 INFO : 34% Done

11 May 2020 16:31:15,891 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:15,891 INFO : Inserting ERG_pan

11 May 2020 16:31:15,894 INFO : 40% Done

11 May 2020 16:31:16,000 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:16,001 INFO : Inserting FOLH1

11 May 2020 16:31:16,003 INFO : 44% Done

11 May 2020 16:31:16,071 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:16,071 INFO : Inserting MMP9

11 May 2020 16:31:16,074 INFO : 52% Done

11 May 2020 16:31:16,224 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:16,224 INFO : Inserting MUC1

11 May 2020 16:31:16,227 INFO : 57% Done

11 May 2020 16:31:16,331 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:16,331 INFO : Inserting NCOA2

11 May 2020 16:31:16,334 INFO : 64% Done

11 May 2020 16:31:16,451 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:16,451 INFO : Inserting PSA

11 May 2020 16:31:16,453 INFO : 68% Done

11 May 2020 16:31:16,521 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:16,521 INFO : Inserting SMAD4

11 May 2020 16:31:16,524 INFO : 74% Done

11 May 2020 16:31:16,639 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:16,639 INFO : Inserting SPINK1

11 May 2020 16:31:16,643 INFO : 80% Done

11 May 2020 16:31:16,737 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:16,737 INFO : Inserting SPRC

11 May 2020 16:31:16,739 INFO : 85% Done

11 May 2020 16:31:16,825 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:16,825 INFO : Inserting TFF3

11 May 2020 16:31:16,827 INFO : 89% Done

11 May 2020 16:31:16,891 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:16,891 INFO : Inserting TGFB1

11 May 2020 16:31:16,893 INFO : 90% Done

11 May 2020 16:31:16,919 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:16,920 INFO : Inserting VEGFA

11 May 2020 16:31:16,923 INFO : 98% Done

11 May 2020 16:31:17,071 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:17,071 INFO : Done parsing Skyline document.

11 May 2020 16:31:17,073 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:31:17,105 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:31:17,189 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:31:17,220 INFO : Cleaning up temp tables

11 May 2020 16:31:17,702 INFO : Completed import of Skyline document from CPDR-FFPE-ID-726_2020-01-29_14-42-29.sky.zip

11 May 2020 16:31:17,704 INFO : 100% Done

11 May 2020 16:31:17,715 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80462/CPDR-FFPE-ID-726_2020-01-29_14-42-29.sky.zip into the system

11 May 2020 16:31:17,715 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80474/CPDR-FFPE-ID-1030_2020-01-29_14-49-38/CPDR-FFPE-ID-1030.skyd into the system

11 May 2020 16:31:17,716 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80474/CPDR-FFPE-ID-1030_2020-01-29_14-49-38/CPDR-FFPE-ID-1030.skyd into the system

11 May 2020 16:31:17,716 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80474/CPDR-FFPE-ID-1030_2020-01-29_14-49-38.sky.zip into the system

11 May 2020 16:31:17,720 INFO : Starting import from CPDR-FFPE-ID-1030_2020-01-29_14-49-38.sky.zip

11 May 2020 16:31:17,727 INFO : Starting to import Skyline document from CPDR-FFPE-ID-1030_2020-01-29_14-49-38.sky.zip

11 May 2020 16:31:17,737 INFO : Expanding CPDR-FFPE-ID-1030.skyd

11 May 2020 16:31:17,998 INFO : Expanding CPDR-FFPE-ID-1030.sky.view

11 May 2020 16:31:17,999 INFO : Expanding CPDR-FFPE-ID-1030.sky

11 May 2020 16:31:18,009 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 16:31:18,012 INFO : 5% Done

11 May 2020 16:31:18,515 INFO : Inserting ANXA2

11 May 2020 16:31:18,523 INFO : 15% Done

11 May 2020 16:31:18,777 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:18,777 INFO : Inserting CAMKK2

11 May 2020 16:31:18,781 INFO : 24% Done

11 May 2020 16:31:18,939 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:18,940 INFO : Inserting CCND1

11 May 2020 16:31:18,943 INFO : 30% Done

11 May 2020 16:31:19,063 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:19,063 INFO : Inserting EGFR

11 May 2020 16:31:19,066 INFO : 35% Done

11 May 2020 16:31:19,172 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:19,172 INFO : Inserting ERG_pan

11 May 2020 16:31:19,174 INFO : 41% Done

11 May 2020 16:31:19,280 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:19,280 INFO : Inserting FOLH1

11 May 2020 16:31:19,282 INFO : 45% Done

11 May 2020 16:31:19,347 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:19,347 INFO : Inserting MMP9

11 May 2020 16:31:19,350 INFO : 52% Done

11 May 2020 16:31:19,488 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:19,488 INFO : Inserting MUC1

11 May 2020 16:31:19,491 INFO : 56% Done

11 May 2020 16:31:19,562 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:19,562 INFO : Inserting NCOA2

11 May 2020 16:31:19,565 INFO : 63% Done

11 May 2020 16:31:19,694 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:19,694 INFO : Inserting PSA

11 May 2020 16:31:19,697 INFO : 68% Done

11 May 2020 16:31:19,778 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:19,778 INFO : Inserting SMAD4

11 May 2020 16:31:19,781 INFO : 74% Done

11 May 2020 16:31:19,893 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:19,893 INFO : Inserting SPINK1

11 May 2020 16:31:19,896 INFO : 79% Done

11 May 2020 16:31:20,004 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:20,005 INFO : Inserting SPRC

11 May 2020 16:31:20,007 INFO : 85% Done

11 May 2020 16:31:20,107 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:20,107 INFO : Inserting TFF3

11 May 2020 16:31:20,109 INFO : 89% Done

11 May 2020 16:31:20,186 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:20,186 INFO : Inserting TGFB1

11 May 2020 16:31:20,188 INFO : 90% Done

11 May 2020 16:31:20,215 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:20,215 INFO : Inserting VEGFA

11 May 2020 16:31:20,218 INFO : 98% Done

11 May 2020 16:31:20,377 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:20,377 INFO : Done parsing Skyline document.

11 May 2020 16:31:20,379 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:31:20,410 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:31:20,493 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:31:20,524 INFO : Cleaning up temp tables

11 May 2020 16:31:20,539 INFO : Completed import of Skyline document from CPDR-FFPE-ID-1030_2020-01-29_14-49-38.sky.zip

11 May 2020 16:31:20,541 INFO : 100% Done

11 May 2020 16:31:20,552 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80474/CPDR-FFPE-ID-1030_2020-01-29_14-49-38.sky.zip into the system

11 May 2020 16:31:20,552 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80478/CPDR-FFPE-ID-1380_2020-01-29_14-57-50/CPDR-FFPE-ID-1380.skyd into the system

11 May 2020 16:31:20,554 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80478/CPDR-FFPE-ID-1380_2020-01-29_14-57-50/CPDR-FFPE-ID-1380.skyd into the system

11 May 2020 16:31:20,554 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80478/CPDR-FFPE-ID-1380_2020-01-29_14-57-50.sky.zip into the system

11 May 2020 16:31:20,559 INFO : Starting import from CPDR-FFPE-ID-1380_2020-01-29_14-57-50.sky.zip

11 May 2020 16:31:20,566 INFO : Starting to import Skyline document from CPDR-FFPE-ID-1380_2020-01-29_14-57-50.sky.zip

11 May 2020 16:31:20,576 INFO : Expanding CPDR-FFPE-ID-1380.skyd

11 May 2020 16:31:20,849 INFO : Expanding CPDR-FFPE-ID-1380.sky.view

11 May 2020 16:31:20,850 INFO : Expanding CPDR-FFPE-ID-1380.sky

11 May 2020 16:31:20,859 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 16:31:20,862 INFO : 5% Done

11 May 2020 16:31:21,112 INFO : Inserting ANXA2

11 May 2020 16:31:21,118 INFO : 14% Done

11 May 2020 16:31:21,214 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:21,215 INFO : Inserting CAMKK2

11 May 2020 16:31:21,217 INFO : 21% Done

11 May 2020 16:31:21,322 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:21,322 INFO : 22% Done

11 May 2020 16:31:21,322 INFO : Inserting CCND1

11 May 2020 16:31:21,324 INFO : 28% Done

11 May 2020 16:31:21,419 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:21,419 INFO : Inserting EGFR

11 May 2020 16:31:21,421 INFO : 34% Done

11 May 2020 16:31:21,507 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:21,507 INFO : Inserting ERG_pan

11 May 2020 16:31:21,510 INFO : 41% Done

11 May 2020 16:31:21,588 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:21,588 INFO : Inserting FOLH1

11 May 2020 16:31:21,590 INFO : 45% Done

11 May 2020 16:31:21,650 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:21,650 INFO : Inserting MMP9

11 May 2020 16:31:21,653 INFO : 52% Done

11 May 2020 16:31:21,755 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:21,755 INFO : Inserting MUC1

11 May 2020 16:31:21,757 INFO : 59% Done

11 May 2020 16:31:21,836 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:21,836 INFO : Inserting NCOA2

11 May 2020 16:31:21,838 INFO : 65% Done

11 May 2020 16:31:21,926 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:21,926 INFO : Inserting PSA

11 May 2020 16:31:21,928 INFO : 68% Done

11 May 2020 16:31:21,976 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:21,976 INFO : Inserting SMAD4

11 May 2020 16:31:21,978 INFO : 74% Done

11 May 2020 16:31:22,068 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:22,068 INFO : Inserting SPINK1

11 May 2020 16:31:22,071 INFO : 79% Done

11 May 2020 16:31:22,156 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:22,157 INFO : Inserting SPRC

11 May 2020 16:31:22,159 INFO : 84% Done

11 May 2020 16:31:22,242 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:22,242 INFO : 85% Done

11 May 2020 16:31:22,242 INFO : Inserting TFF3

11 May 2020 16:31:22,244 INFO : 88% Done

11 May 2020 16:31:22,304 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:22,304 INFO : Inserting TGFB1

11 May 2020 16:31:22,306 INFO : 91% Done

11 May 2020 16:31:22,336 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:22,337 INFO : Inserting VEGFA

11 May 2020 16:31:22,339 INFO : 98% Done

11 May 2020 16:31:22,455 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:22,455 INFO : Done parsing Skyline document.

11 May 2020 16:31:22,457 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:31:22,487 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:31:22,563 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:31:22,591 INFO : Cleaning up temp tables

11 May 2020 16:31:22,602 INFO : Completed import of Skyline document from CPDR-FFPE-ID-1380_2020-01-29_14-57-50.sky.zip

11 May 2020 16:31:22,604 INFO : 100% Done

11 May 2020 16:31:22,615 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80478/CPDR-FFPE-ID-1380_2020-01-29_14-57-50.sky.zip into the system

11 May 2020 16:31:22,615 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80191/CPDR-FFPE-ID-428_2020-01-28_11-16-26/CPDR-FFPE-ID-428.skyd into the system

11 May 2020 16:31:22,616 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80191/CPDR-FFPE-ID-428_2020-01-28_11-16-26/CPDR-FFPE-ID-428.skyd into the system

11 May 2020 16:31:22,616 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80191/CPDR-FFPE-ID-428_2020-01-28_11-16-26.sky.zip into the system

11 May 2020 16:31:22,620 INFO : Starting import from CPDR-FFPE-ID-428_2020-01-28_11-16-26.sky.zip

11 May 2020 16:31:22,627 INFO : Starting to import Skyline document from CPDR-FFPE-ID-428_2020-01-28_11-16-26.sky.zip

11 May 2020 16:31:22,636 INFO : Expanding CPDR-FFPE-ID-428.skyd

11 May 2020 16:31:22,859 INFO : Expanding CPDR-FFPE-ID-428.sky.view

11 May 2020 16:31:22,860 INFO : Expanding CPDR-FFPE-ID-428.sky

11 May 2020 16:31:22,868 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1

11 May 2020 16:31:22,871 INFO : 6% Done

11 May 2020 16:31:23,098 INFO : Inserting ANXA2

11 May 2020 16:31:23,105 INFO : 14% Done

11 May 2020 16:31:23,174 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:23,174 INFO : Inserting CAMKK2

11 May 2020 16:31:23,177 INFO : 20% Done

11 May 2020 16:31:23,248 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:23,248 INFO : Inserting CCND1

11 May 2020 16:31:23,251 INFO : 25% Done

11 May 2020 16:31:23,319 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:23,319 INFO : Inserting EGFR

11 May 2020 16:31:23,322 INFO : 31% Done

11 May 2020 16:31:23,401 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:23,401 INFO : Inserting ERG_pan

11 May 2020 16:31:23,404 INFO : 42% Done

11 May 2020 16:31:23,533 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:23,534 INFO : Inserting FOLH1

11 May 2020 16:31:23,536 INFO : 48% Done

11 May 2020 16:31:23,609 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:23,609 INFO : Inserting MMP9

11 May 2020 16:31:23,612 INFO : 59% Done

11 May 2020 16:31:23,750 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:23,751 INFO : 61% Done

11 May 2020 16:31:23,751 INFO : Inserting MUC1

11 May 2020 16:31:23,753 INFO : 66% Done

11 May 2020 16:31:23,826 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:23,826 INFO : Inserting NCOA2

11 May 2020 16:31:23,828 INFO : 69% Done

11 May 2020 16:31:23,869 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:23,870 INFO : 71% Done

11 May 2020 16:31:23,870 INFO : Inserting PSA

11 May 2020 16:31:23,872 INFO : 74% Done

11 May 2020 16:31:23,935 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:23,935 INFO : Inserting SMAD4

11 May 2020 16:31:23,937 INFO : 78% Done

11 May 2020 16:31:23,993 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:23,993 INFO : Inserting SPINK1

11 May 2020 16:31:23,995 INFO : 82% Done

11 May 2020 16:31:24,049 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:24,049 INFO : Inserting SPRC

11 May 2020 16:31:24,051 INFO : 86% Done

11 May 2020 16:31:24,092 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:24,092 INFO : Inserting TFF3

11 May 2020 16:31:24,094 INFO : 92% Done

11 May 2020 16:31:24,155 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:24,155 INFO : Inserting TGFB1

11 May 2020 16:31:24,157 INFO : 93% Done

11 May 2020 16:31:24,183 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:24,183 INFO : Inserting VEGFA

11 May 2020 16:31:24,186 INFO : 98% Done

11 May 2020 16:31:24,250 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:24,250 INFO : Done parsing Skyline document.

11 May 2020 16:31:24,253 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:31:24,280 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:31:24,341 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:31:24,362 INFO : Cleaning up temp tables

11 May 2020 16:31:24,854 INFO : Completed import of Skyline document from CPDR-FFPE-ID-428_2020-01-28_11-16-26.sky.zip

11 May 2020 16:31:24,856 INFO : 100% Done

11 May 2020 16:31:24,867 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80191/CPDR-FFPE-ID-428_2020-01-28_11-16-26.sky.zip into the system

11 May 2020 16:31:24,867 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80192/CPDR-FFPE-ID-497_2020-01-28_11-16-43/CPDR-FFPE-ID-497.skyd into the system

11 May 2020 16:31:24,868 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80192/CPDR-FFPE-ID-497_2020-01-28_11-16-43/CPDR-FFPE-ID-497.skyd into the system

11 May 2020 16:31:24,869 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80192/CPDR-FFPE-ID-497_2020-01-28_11-16-43.sky.zip into the system

11 May 2020 16:31:24,873 INFO : Starting import from CPDR-FFPE-ID-497_2020-01-28_11-16-43.sky.zip

11 May 2020 16:31:24,880 INFO : Starting to import Skyline document from CPDR-FFPE-ID-497_2020-01-28_11-16-43.sky.zip

11 May 2020 16:31:24,890 INFO : Expanding CPDR-FFPE-ID-497.skyd

11 May 2020 16:31:25,172 INFO : Expanding CPDR-FFPE-ID-497.sky.view

11 May 2020 16:31:25,172 INFO : Expanding CPDR-FFPE-ID-497.sky

11 May 2020 16:31:25,181 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1

11 May 2020 16:31:25,184 INFO : 6% Done

11 May 2020 16:31:25,495 INFO : Inserting ANXA2

11 May 2020 16:31:25,504 INFO : 14% Done

11 May 2020 16:31:25,580 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:25,581 INFO : Inserting CAMKK2

11 May 2020 16:31:25,583 INFO : 20% Done

11 May 2020 16:31:25,654 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:25,654 INFO : Inserting CCND1

11 May 2020 16:31:25,657 INFO : 26% Done

11 May 2020 16:31:25,736 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:25,736 INFO : Inserting EGFR

11 May 2020 16:31:25,739 INFO : 32% Done

11 May 2020 16:31:25,805 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:25,805 INFO : Inserting ERG_pan

11 May 2020 16:31:25,808 INFO : 42% Done

11 May 2020 16:31:25,942 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:25,942 INFO : Inserting FOLH1

11 May 2020 16:31:25,944 INFO : 48% Done

11 May 2020 16:31:26,009 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:26,009 INFO : Inserting MMP9

11 May 2020 16:31:26,013 INFO : 60% Done

11 May 2020 16:31:26,161 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:26,161 INFO : Inserting MUC1

11 May 2020 16:31:26,163 INFO : 65% Done

11 May 2020 16:31:26,227 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:26,227 INFO : Inserting NCOA2

11 May 2020 16:31:26,229 INFO : 68% Done

11 May 2020 16:31:26,280 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:26,280 INFO : Inserting PSA

11 May 2020 16:31:26,282 INFO : 74% Done

11 May 2020 16:31:26,351 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:26,351 INFO : Inserting SMAD4

11 May 2020 16:31:26,353 INFO : 78% Done

11 May 2020 16:31:26,414 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:26,414 INFO : Inserting SPINK1

11 May 2020 16:31:26,416 INFO : 82% Done

11 May 2020 16:31:26,479 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:26,479 INFO : Inserting SPRC

11 May 2020 16:31:26,481 INFO : 86% Done

11 May 2020 16:31:26,526 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:26,526 INFO : Inserting TFF3

11 May 2020 16:31:26,528 INFO : 91% Done

11 May 2020 16:31:26,590 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:26,590 INFO : Inserting TGFB1

11 May 2020 16:31:26,592 INFO : 93% Done

11 May 2020 16:31:26,622 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:26,622 INFO : Inserting VEGFA

11 May 2020 16:31:26,624 INFO : 98% Done

11 May 2020 16:31:26,694 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:26,694 INFO : Done parsing Skyline document.

11 May 2020 16:31:26,696 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:31:26,722 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:31:26,783 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:31:26,806 INFO : Cleaning up temp tables

11 May 2020 16:31:27,279 INFO : Completed import of Skyline document from CPDR-FFPE-ID-497_2020-01-28_11-16-43.sky.zip

11 May 2020 16:31:27,281 INFO : 100% Done

11 May 2020 16:31:27,293 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80192/CPDR-FFPE-ID-497_2020-01-28_11-16-43.sky.zip into the system

11 May 2020 16:31:27,293 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80231/CPDR-FFPE-ID-440_2020-01-28_13-27-00/CPDR-FFPE-ID-440.skyd into the system

11 May 2020 16:31:27,294 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80231/CPDR-FFPE-ID-440_2020-01-28_13-27-00/CPDR-FFPE-ID-440.skyd into the system

11 May 2020 16:31:27,294 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80231/CPDR-FFPE-ID-440_2020-01-28_13-27-00.sky.zip into the system

11 May 2020 16:31:27,298 INFO : Starting import from CPDR-FFPE-ID-440_2020-01-28_13-27-00.sky.zip

11 May 2020 16:31:27,317 INFO : Starting to import Skyline document from CPDR-FFPE-ID-440_2020-01-28_13-27-00.sky.zip

11 May 2020 16:31:27,326 INFO : Expanding CPDR-FFPE-ID-440.skyd

11 May 2020 16:31:27,510 INFO : Expanding CPDR-FFPE-ID-440.sky.view

11 May 2020 16:31:27,511 INFO : Expanding CPDR-FFPE-ID-440.sky

11 May 2020 16:31:27,520 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:31:27,523 INFO : 6% Done

11 May 2020 16:31:27,822 INFO : Inserting ANXA2

11 May 2020 16:31:27,829 INFO : 13% Done

11 May 2020 16:31:27,892 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:27,892 INFO : Inserting CAMKK2

11 May 2020 16:31:27,894 INFO : 19% Done

11 May 2020 16:31:27,957 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:27,957 INFO : Inserting CCND1

11 May 2020 16:31:27,960 INFO : 27% Done

11 May 2020 16:31:28,056 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:28,056 INFO : Inserting EGFR

11 May 2020 16:31:28,058 INFO : 32% Done

11 May 2020 16:31:28,105 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:28,105 INFO : Inserting ERG_pan

11 May 2020 16:31:28,107 INFO : 35% Done

11 May 2020 16:31:28,154 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:28,155 INFO : 36% Done

11 May 2020 16:31:28,155 INFO : Inserting FOLH1

11 May 2020 16:31:28,157 INFO : 39% Done

11 May 2020 16:31:28,205 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:28,205 INFO : Inserting MMP9

11 May 2020 16:31:28,207 INFO : 46% Done

11 May 2020 16:31:28,287 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:28,287 INFO : Inserting MUC1

11 May 2020 16:31:28,289 INFO : 51% Done

11 May 2020 16:31:28,336 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:28,336 INFO : Inserting NCOA2

11 May 2020 16:31:28,338 INFO : 57% Done

11 May 2020 16:31:28,403 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:28,404 INFO : Inserting PSA

11 May 2020 16:31:28,406 INFO : 66% Done

11 May 2020 16:31:28,494 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:28,495 INFO : Inserting SMAD4

11 May 2020 16:31:28,496 INFO : 70% Done

11 May 2020 16:31:28,542 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:28,542 INFO : Inserting SPINK1

11 May 2020 16:31:28,545 INFO : 76% Done

11 May 2020 16:31:28,630 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:28,630 INFO : Inserting SPRC

11 May 2020 16:31:28,632 INFO : 82% Done

11 May 2020 16:31:28,725 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:28,725 INFO : Inserting TFF3

11 May 2020 16:31:28,728 INFO : 91% Done

11 May 2020 16:31:28,821 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:28,821 INFO : Inserting TGFB1

11 May 2020 16:31:28,823 INFO : 93% Done

11 May 2020 16:31:28,855 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:28,855 INFO : Inserting VEGFA

11 May 2020 16:31:28,857 INFO : 98% Done

11 May 2020 16:31:28,924 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:28,924 INFO : Done parsing Skyline document.

11 May 2020 16:31:28,926 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:31:28,953 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:31:29,028 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:31:29,047 INFO : Cleaning up temp tables

11 May 2020 16:31:29,529 INFO : Completed import of Skyline document from CPDR-FFPE-ID-440_2020-01-28_13-27-00.sky.zip

11 May 2020 16:31:29,531 INFO : 100% Done

11 May 2020 16:31:29,542 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80231/CPDR-FFPE-ID-440_2020-01-28_13-27-00.sky.zip into the system

11 May 2020 16:31:29,543 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80277/CPDR-FFPE-ID-573_2020-01-28_13-40-55/CPDR-FFPE-ID-573.skyd into the system

11 May 2020 16:31:29,544 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80277/CPDR-FFPE-ID-573_2020-01-28_13-40-55/CPDR-FFPE-ID-573.skyd into the system

11 May 2020 16:31:29,544 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80277/CPDR-FFPE-ID-573_2020-01-28_13-40-55.sky.zip into the system

11 May 2020 16:31:29,548 INFO : Starting import from CPDR-FFPE-ID-573_2020-01-28_13-40-55.sky.zip

11 May 2020 16:31:29,555 INFO : Starting to import Skyline document from CPDR-FFPE-ID-573_2020-01-28_13-40-55.sky.zip

11 May 2020 16:31:29,560 INFO : Expanding CPDR-FFPE-ID-573.skyd

11 May 2020 16:31:29,726 INFO : Expanding CPDR-FFPE-ID-573.sky.view

11 May 2020 16:31:29,726 INFO : Expanding CPDR-FFPE-ID-573.sky

11 May 2020 16:31:29,735 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:31:29,737 INFO : 5% Done

11 May 2020 16:31:29,885 INFO : Inserting ANXA2

11 May 2020 16:31:29,893 INFO : 14% Done

11 May 2020 16:31:29,975 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:29,975 INFO : Inserting CAMKK2

11 May 2020 16:31:29,979 INFO : 21% Done

11 May 2020 16:31:30,053 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:30,053 INFO : Inserting CCND1

11 May 2020 16:31:30,055 INFO : 27% Done

11 May 2020 16:31:30,143 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:30,143 INFO : Inserting EGFR

11 May 2020 16:31:30,146 INFO : 32% Done

11 May 2020 16:31:30,201 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:30,201 INFO : Inserting ERG_pan

11 May 2020 16:31:30,204 INFO : 39% Done

11 May 2020 16:31:30,266 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:30,267 INFO : Inserting FOLH1

11 May 2020 16:31:30,269 INFO : 42% Done

11 May 2020 16:31:30,308 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:30,308 INFO : Inserting MMP9

11 May 2020 16:31:30,310 INFO : 48% Done

11 May 2020 16:31:30,374 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:30,374 INFO : Inserting MUC1

11 May 2020 16:31:30,376 INFO : 53% Done

11 May 2020 16:31:30,423 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:30,423 INFO : Inserting NCOA2

11 May 2020 16:31:30,426 INFO : 59% Done

11 May 2020 16:31:30,490 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:30,491 INFO : Inserting PSA

11 May 2020 16:31:30,493 INFO : 65% Done

11 May 2020 16:31:30,557 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:30,557 INFO : Inserting SMAD4

11 May 2020 16:31:30,559 INFO : 70% Done

11 May 2020 16:31:30,613 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:30,613 INFO : Inserting SPINK1

11 May 2020 16:31:30,615 INFO : 75% Done

11 May 2020 16:31:30,677 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:30,678 INFO : Inserting SPRC

11 May 2020 16:31:30,680 INFO : 82% Done

11 May 2020 16:31:30,753 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:30,753 INFO : Inserting TFF3

11 May 2020 16:31:30,755 INFO : 88% Done

11 May 2020 16:31:30,823 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:30,823 INFO : Inserting TGFB1

11 May 2020 16:31:30,825 INFO : 91% Done

11 May 2020 16:31:30,864 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:30,865 INFO : 93% Done

11 May 2020 16:31:30,865 INFO : Inserting VEGFA

11 May 2020 16:31:30,868 INFO : 98% Done

11 May 2020 16:31:30,942 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:30,942 INFO : Done parsing Skyline document.

11 May 2020 16:31:30,945 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:31:30,971 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:31:31,029 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:31:31,051 INFO : Cleaning up temp tables

11 May 2020 16:31:31,523 INFO : Completed import of Skyline document from CPDR-FFPE-ID-573_2020-01-28_13-40-55.sky.zip

11 May 2020 16:31:31,525 INFO : 100% Done

11 May 2020 16:31:31,536 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80277/CPDR-FFPE-ID-573_2020-01-28_13-40-55.sky.zip into the system

11 May 2020 16:31:31,537 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80283/CPDR-FFPE-ID-607_2020-01-28_13-42-17/CPDR-FFPE-ID-607.skyd into the system

11 May 2020 16:31:31,538 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80283/CPDR-FFPE-ID-607_2020-01-28_13-42-17/CPDR-FFPE-ID-607.skyd into the system

11 May 2020 16:31:31,538 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80283/CPDR-FFPE-ID-607_2020-01-28_13-42-17.sky.zip into the system

11 May 2020 16:31:31,542 INFO : Starting import from CPDR-FFPE-ID-607_2020-01-28_13-42-17.sky.zip

11 May 2020 16:31:31,549 INFO : Starting to import Skyline document from CPDR-FFPE-ID-607_2020-01-28_13-42-17.sky.zip

11 May 2020 16:31:31,563 INFO : Expanding CPDR-FFPE-ID-607.skyd

11 May 2020 16:31:31,848 INFO : Expanding CPDR-FFPE-ID-607.sky.view

11 May 2020 16:31:31,849 INFO : Expanding CPDR-FFPE-ID-607.sky

11 May 2020 16:31:31,858 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:31:31,861 INFO : 6% Done

11 May 2020 16:31:32,133 INFO : Inserting ANXA2

11 May 2020 16:31:32,141 INFO : 14% Done

11 May 2020 16:31:32,257 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:32,257 INFO : Inserting CAMKK2

11 May 2020 16:31:32,260 INFO : 21% Done

11 May 2020 16:31:32,372 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:32,372 INFO : Inserting CCND1

11 May 2020 16:31:32,375 INFO : 25% Done

11 May 2020 16:31:32,450 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:32,451 INFO : Inserting EGFR

11 May 2020 16:31:32,454 INFO : 33% Done

11 May 2020 16:31:32,597 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:32,597 INFO : Inserting ERG_pan

11 May 2020 16:31:32,601 INFO : 45% Done

11 May 2020 16:31:32,783 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:32,783 INFO : Inserting FOLH1

11 May 2020 16:31:32,786 INFO : 50% Done

11 May 2020 16:31:32,885 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:32,885 INFO : Inserting MMP9

11 May 2020 16:31:32,888 INFO : 58% Done

11 May 2020 16:31:33,020 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:33,021 INFO : Inserting MUC1

11 May 2020 16:31:33,024 INFO : 66% Done

11 May 2020 16:31:33,171 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:33,171 INFO : Inserting NCOA2

11 May 2020 16:31:33,174 INFO : 72% Done

11 May 2020 16:31:33,258 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:33,258 INFO : Inserting PSA

11 May 2020 16:31:33,260 INFO : 74% Done

11 May 2020 16:31:33,313 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:33,314 INFO : Inserting SMAD4

11 May 2020 16:31:33,316 INFO : 79% Done

11 May 2020 16:31:33,406 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:33,406 INFO : Inserting SPINK1

11 May 2020 16:31:33,408 INFO : 83% Done

11 May 2020 16:31:33,472 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:33,472 INFO : Inserting SPRC

11 May 2020 16:31:33,475 INFO : 87% Done

11 May 2020 16:31:33,542 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:33,542 INFO : Inserting TFF3

11 May 2020 16:31:33,544 INFO : 90% Done

11 May 2020 16:31:33,598 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:33,599 INFO : Inserting TGFB1

11 May 2020 16:31:33,600 INFO : 92% Done

11 May 2020 16:31:33,627 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:33,627 INFO : Inserting VEGFA

11 May 2020 16:31:33,630 INFO : 98% Done

11 May 2020 16:31:33,750 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:33,750 INFO : Done parsing Skyline document.

11 May 2020 16:31:33,752 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:31:33,783 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:31:33,873 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:31:33,902 INFO : Cleaning up temp tables

11 May 2020 16:31:34,388 INFO : Completed import of Skyline document from CPDR-FFPE-ID-607_2020-01-28_13-42-17.sky.zip

11 May 2020 16:31:34,390 INFO : 100% Done

11 May 2020 16:31:34,401 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80283/CPDR-FFPE-ID-607_2020-01-28_13-42-17.sky.zip into the system

11 May 2020 16:31:34,401 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80285/CPDR-FFPE-ID-623_2020-01-28_13-43-21/CPDR-FFPE-ID-623.skyd into the system

11 May 2020 16:31:34,402 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80285/CPDR-FFPE-ID-623_2020-01-28_13-43-21/CPDR-FFPE-ID-623.skyd into the system

11 May 2020 16:31:34,402 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80285/CPDR-FFPE-ID-623_2020-01-28_13-43-21.sky.zip into the system

11 May 2020 16:31:34,406 INFO : Starting import from CPDR-FFPE-ID-623_2020-01-28_13-43-21.sky.zip

11 May 2020 16:31:34,413 INFO : Starting to import Skyline document from CPDR-FFPE-ID-623_2020-01-28_13-43-21.sky.zip

11 May 2020 16:31:34,429 INFO : Expanding CPDR-FFPE-ID-623.skyd

11 May 2020 16:31:34,840 INFO : Expanding CPDR-FFPE-ID-623.sky.view

11 May 2020 16:31:34,841 INFO : Expanding CPDR-FFPE-ID-623.sky

11 May 2020 16:31:34,851 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:31:34,855 INFO : 6% Done

11 May 2020 16:31:35,183 WARN : Duplicate entries found for file path C:\Users\gaoy643\Documents\___Data_part4\Tao\EDRN-CPDR Project\__Batch4_Top16\7. Batch4(Batch7)\rawfiles\EDRN_CPDR_Top16_B4_prepID_24_2018May21_Bilbo_24F53.raw, may not resolve sample file-scoped chromatograms correctly

11 May 2020 16:31:35,280 INFO : Inserting ANXA2

11 May 2020 16:31:35,288 INFO : 13% Done

11 May 2020 16:31:35,412 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:35,412 INFO : Inserting CAMKK2

11 May 2020 16:31:35,416 INFO : 20% Done

11 May 2020 16:31:35,546 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:35,546 INFO : Inserting CCND1

11 May 2020 16:31:35,549 INFO : 24% Done

11 May 2020 16:31:35,637 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:35,637 INFO : Inserting EGFR

11 May 2020 16:31:35,641 INFO : 33% Done

11 May 2020 16:31:35,851 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:35,852 INFO : Inserting ERG_pan

11 May 2020 16:31:35,856 INFO : 44% Done

11 May 2020 16:31:36,067 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:36,067 INFO : Inserting FOLH1

11 May 2020 16:31:36,070 INFO : 51% Done

11 May 2020 16:31:36,205 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:36,205 INFO : Inserting MMP9

11 May 2020 16:31:36,210 INFO : 62% Done

11 May 2020 16:31:36,436 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:36,436 INFO : Inserting MUC1

11 May 2020 16:31:36,440 INFO : 70% Done

11 May 2020 16:31:36,593 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:36,593 INFO : Inserting NCOA2

11 May 2020 16:31:36,597 INFO : 75% Done

11 May 2020 16:31:36,712 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:36,712 INFO : Inserting PSA

11 May 2020 16:31:36,715 INFO : 78% Done

11 May 2020 16:31:36,789 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:36,789 INFO : Inserting SMAD4

11 May 2020 16:31:36,792 INFO : 81% Done

11 May 2020 16:31:36,867 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:36,867 INFO : Inserting SPINK1

11 May 2020 16:31:36,869 INFO : 85% Done

11 May 2020 16:31:36,955 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:36,955 INFO : Inserting SPRC

11 May 2020 16:31:36,957 INFO : 89% Done

11 May 2020 16:31:37,036 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:37,037 INFO : Inserting TFF3

11 May 2020 16:31:37,039 INFO : 91% Done

11 May 2020 16:31:37,091 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:37,091 INFO : Inserting TGFB1

11 May 2020 16:31:37,093 INFO : 93% Done

11 May 2020 16:31:37,130 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:37,130 INFO : Inserting VEGFA

11 May 2020 16:31:37,133 INFO : 98% Done

11 May 2020 16:31:37,255 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:37,255 INFO : Done parsing Skyline document.

11 May 2020 16:31:37,257 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:31:37,291 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:31:37,403 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:31:37,446 INFO : Cleaning up temp tables

11 May 2020 16:31:37,906 INFO : Completed import of Skyline document from CPDR-FFPE-ID-623_2020-01-28_13-43-21.sky.zip

11 May 2020 16:31:37,908 INFO : 100% Done

11 May 2020 16:31:37,919 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80285/CPDR-FFPE-ID-623_2020-01-28_13-43-21.sky.zip into the system

11 May 2020 16:31:37,920 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80302/CPDR-FFPE-ID-613_2020-01-28_13-47-05/CPDR-FFPE-ID-613.skyd into the system

11 May 2020 16:31:37,921 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80302/CPDR-FFPE-ID-613_2020-01-28_13-47-05/CPDR-FFPE-ID-613.skyd into the system

11 May 2020 16:31:37,921 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80302/CPDR-FFPE-ID-613_2020-01-28_13-47-05.sky.zip into the system

11 May 2020 16:31:37,925 INFO : Starting import from CPDR-FFPE-ID-613_2020-01-28_13-47-05.sky.zip

11 May 2020 16:31:37,932 INFO : Starting to import Skyline document from CPDR-FFPE-ID-613_2020-01-28_13-47-05.sky.zip

11 May 2020 16:31:37,938 INFO : Expanding CPDR-FFPE-ID-613.skyd

11 May 2020 16:31:38,105 INFO : Expanding CPDR-FFPE-ID-613.sky.view

11 May 2020 16:31:38,106 INFO : Expanding CPDR-FFPE-ID-613.sky

11 May 2020 16:31:38,114 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:31:38,117 INFO : 6% Done

11 May 2020 16:31:38,317 INFO : Inserting ANXA2

11 May 2020 16:31:38,325 INFO : 16% Done

11 May 2020 16:31:38,418 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:38,418 INFO : Inserting CAMKK2

11 May 2020 16:31:38,420 INFO : 23% Done

11 May 2020 16:31:38,513 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:38,513 INFO : Inserting CCND1

11 May 2020 16:31:38,515 INFO : 28% Done

11 May 2020 16:31:38,578 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:38,578 INFO : Inserting EGFR

11 May 2020 16:31:38,581 INFO : 35% Done

11 May 2020 16:31:38,661 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:38,661 INFO : Inserting ERG_pan

11 May 2020 16:31:38,664 INFO : 44% Done

11 May 2020 16:31:38,768 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:38,768 INFO : Inserting FOLH1

11 May 2020 16:31:38,770 INFO : 48% Done

11 May 2020 16:31:38,818 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:38,818 INFO : Inserting MMP9

11 May 2020 16:31:38,821 INFO : 58% Done

11 May 2020 16:31:38,929 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:38,929 INFO : Inserting MUC1

11 May 2020 16:31:38,931 INFO : 62% Done

11 May 2020 16:31:38,988 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:38,988 INFO : Inserting NCOA2

11 May 2020 16:31:38,990 INFO : 70% Done

11 May 2020 16:31:39,067 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:39,067 INFO : Inserting PSA

11 May 2020 16:31:39,069 INFO : 72% Done

11 May 2020 16:31:39,112 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:39,112 INFO : Inserting SMAD4

11 May 2020 16:31:39,114 INFO : 76% Done

11 May 2020 16:31:39,164 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:39,164 INFO : Inserting SPINK1

11 May 2020 16:31:39,166 INFO : 80% Done

11 May 2020 16:31:39,215 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:39,216 INFO : Inserting SPRC

11 May 2020 16:31:39,218 INFO : 84% Done

11 May 2020 16:31:39,262 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:39,263 INFO : Inserting TFF3

11 May 2020 16:31:39,264 INFO : 89% Done

11 May 2020 16:31:39,310 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:39,311 INFO : Inserting TGFB1

11 May 2020 16:31:39,312 INFO : 90% Done

11 May 2020 16:31:39,337 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:39,337 INFO : Inserting VEGFA

11 May 2020 16:31:39,340 INFO : 98% Done

11 May 2020 16:31:39,428 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:39,428 INFO : Done parsing Skyline document.

11 May 2020 16:31:39,430 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:31:39,457 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:31:39,560 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:31:39,579 INFO : Cleaning up temp tables

11 May 2020 16:31:39,595 INFO : Completed import of Skyline document from CPDR-FFPE-ID-613_2020-01-28_13-47-05.sky.zip

11 May 2020 16:31:39,597 INFO : 100% Done

11 May 2020 16:31:39,607 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80302/CPDR-FFPE-ID-613_2020-01-28_13-47-05.sky.zip into the system

11 May 2020 16:31:39,608 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80391/CPDR-FFPE-ID-850_2020-01-29_12-24-07/CPDR-FFPE-ID-850.skyd into the system

11 May 2020 16:31:39,609 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80391/CPDR-FFPE-ID-850_2020-01-29_12-24-07/CPDR-FFPE-ID-850.skyd into the system

11 May 2020 16:31:39,609 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80391/CPDR-FFPE-ID-850_2020-01-29_12-24-07.sky.zip into the system

11 May 2020 16:31:39,613 INFO : Starting import from CPDR-FFPE-ID-850_2020-01-29_12-24-07.sky.zip

11 May 2020 16:31:39,620 INFO : Starting to import Skyline document from CPDR-FFPE-ID-850_2020-01-29_12-24-07.sky.zip

11 May 2020 16:31:39,629 INFO : Expanding CPDR-FFPE-ID-850.skyd

11 May 2020 16:31:39,866 INFO : Expanding CPDR-FFPE-ID-850.sky.view

11 May 2020 16:31:39,867 INFO : Expanding CPDR-FFPE-ID-850.sky

11 May 2020 16:31:39,875 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:31:39,878 INFO : 5% Done

11 May 2020 16:31:40,171 INFO : Inserting ANXA2

11 May 2020 16:31:40,179 INFO : 12% Done

11 May 2020 16:31:40,263 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:40,264 INFO : Inserting CAMKK2

11 May 2020 16:31:40,266 INFO : 22% Done

11 May 2020 16:31:40,383 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:40,383 INFO : Inserting CCND1

11 May 2020 16:31:40,385 INFO : 27% Done

11 May 2020 16:31:40,475 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:40,475 INFO : Inserting EGFR

11 May 2020 16:31:40,478 INFO : 33% Done

11 May 2020 16:31:40,557 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:40,557 INFO : Inserting ERG_pan

11 May 2020 16:31:40,560 INFO : 40% Done

11 May 2020 16:31:40,660 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:40,660 INFO : 41% Done

11 May 2020 16:31:40,660 INFO : Inserting FOLH1

11 May 2020 16:31:40,662 INFO : 43% Done

11 May 2020 16:31:40,713 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:40,713 INFO : 45% Done

11 May 2020 16:31:40,713 INFO : Inserting MMP9

11 May 2020 16:31:40,716 INFO : 52% Done

11 May 2020 16:31:40,816 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:40,816 INFO : Inserting MUC1

11 May 2020 16:31:40,819 INFO : 57% Done

11 May 2020 16:31:40,892 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:40,892 INFO : Inserting NCOA2

11 May 2020 16:31:40,895 INFO : 65% Done

11 May 2020 16:31:40,991 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:40,991 INFO : Inserting PSA

11 May 2020 16:31:40,993 INFO : 69% Done

11 May 2020 16:31:41,050 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:41,050 INFO : Inserting SMAD4

11 May 2020 16:31:41,052 INFO : 74% Done

11 May 2020 16:31:41,131 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:41,131 INFO : Inserting SPINK1

11 May 2020 16:31:41,134 INFO : 78% Done

11 May 2020 16:31:41,198 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:41,198 INFO : Inserting SPRC

11 May 2020 16:31:41,201 INFO : 84% Done

11 May 2020 16:31:41,276 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:41,276 INFO : Inserting TFF3

11 May 2020 16:31:41,278 INFO : 89% Done

11 May 2020 16:31:41,340 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:41,341 INFO : Inserting TGFB1

11 May 2020 16:31:41,342 INFO : 90% Done

11 May 2020 16:31:41,366 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:41,366 INFO : Inserting VEGFA

11 May 2020 16:31:41,369 INFO : 98% Done

11 May 2020 16:31:41,482 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:41,482 INFO : Done parsing Skyline document.

11 May 2020 16:31:41,484 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:31:41,513 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:31:41,580 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:31:41,606 INFO : Cleaning up temp tables

11 May 2020 16:31:41,609 INFO : Completed import of Skyline document from CPDR-FFPE-ID-850_2020-01-29_12-24-07.sky.zip

11 May 2020 16:31:41,618 INFO : 100% Done

11 May 2020 16:31:41,629 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80391/CPDR-FFPE-ID-850_2020-01-29_12-24-07.sky.zip into the system

11 May 2020 16:31:41,629 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80280/CPDR-FFPE-ID-779_2020-01-28_13-41-34/CPDR-FFPE-ID-779.skyd into the system

11 May 2020 16:31:41,630 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80280/CPDR-FFPE-ID-779_2020-01-28_13-41-34/CPDR-FFPE-ID-779.skyd into the system

11 May 2020 16:31:41,630 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80280/CPDR-FFPE-ID-779_2020-01-28_13-41-34.sky.zip into the system

11 May 2020 16:31:41,634 INFO : Starting import from CPDR-FFPE-ID-779_2020-01-28_13-41-34.sky.zip

11 May 2020 16:31:41,641 INFO : Starting to import Skyline document from CPDR-FFPE-ID-779_2020-01-28_13-41-34.sky.zip

11 May 2020 16:31:41,651 INFO : Expanding CPDR-FFPE-ID-779.skyd

11 May 2020 16:31:41,891 INFO : Expanding CPDR-FFPE-ID-779.sky.view

11 May 2020 16:31:41,892 INFO : Expanding CPDR-FFPE-ID-779.sky

11 May 2020 16:31:41,900 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:31:41,904 INFO : 6% Done

11 May 2020 16:31:42,140 INFO : Inserting ANXA2

11 May 2020 16:31:42,148 INFO : 15% Done

11 May 2020 16:31:42,266 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:42,266 INFO : Inserting CAMKK2

11 May 2020 16:31:42,269 INFO : 22% Done

11 May 2020 16:31:42,364 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:42,365 INFO : Inserting CCND1

11 May 2020 16:31:42,367 INFO : 26% Done

11 May 2020 16:31:42,434 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:42,434 INFO : Inserting EGFR

11 May 2020 16:31:42,437 INFO : 33% Done

11 May 2020 16:31:42,551 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:42,551 INFO : 35% Done

11 May 2020 16:31:42,551 INFO : Inserting ERG_pan

11 May 2020 16:31:42,554 INFO : 43% Done

11 May 2020 16:31:42,685 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:42,685 INFO : 44% Done

11 May 2020 16:31:42,685 INFO : Inserting FOLH1

11 May 2020 16:31:42,687 INFO : 49% Done

11 May 2020 16:31:42,757 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:42,758 INFO : Inserting MMP9

11 May 2020 16:31:42,761 INFO : 59% Done

11 May 2020 16:31:42,901 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:42,901 INFO : Inserting MUC1

11 May 2020 16:31:42,904 INFO : 66% Done

11 May 2020 16:31:42,996 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:42,996 INFO : Inserting NCOA2

11 May 2020 16:31:42,999 INFO : 73% Done

11 May 2020 16:31:43,073 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:43,073 INFO : Inserting PSA

11 May 2020 16:31:43,075 INFO : 75% Done

11 May 2020 16:31:43,125 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:43,125 INFO : Inserting SMAD4

11 May 2020 16:31:43,127 INFO : 79% Done

11 May 2020 16:31:43,183 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:43,183 INFO : Inserting SPINK1

11 May 2020 16:31:43,185 INFO : 83% Done

11 May 2020 16:31:43,239 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:43,239 INFO : Inserting SPRC

11 May 2020 16:31:43,241 INFO : 86% Done

11 May 2020 16:31:43,293 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:43,293 INFO : Inserting TFF3

11 May 2020 16:31:43,295 INFO : 90% Done

11 May 2020 16:31:43,343 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:43,343 INFO : Inserting TGFB1

11 May 2020 16:31:43,345 INFO : 92% Done

11 May 2020 16:31:43,370 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:43,370 INFO : Inserting VEGFA

11 May 2020 16:31:43,373 INFO : 98% Done

11 May 2020 16:31:43,457 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:43,457 INFO : Done parsing Skyline document.

11 May 2020 16:31:43,459 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:31:43,488 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:31:43,556 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:31:43,582 INFO : Cleaning up temp tables

11 May 2020 16:31:44,081 INFO : Completed import of Skyline document from CPDR-FFPE-ID-779_2020-01-28_13-41-34.sky.zip

11 May 2020 16:31:44,083 INFO : 100% Done

11 May 2020 16:31:44,096 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80280/CPDR-FFPE-ID-779_2020-01-28_13-41-34.sky.zip into the system

11 May 2020 16:31:44,096 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80287/CPDR-FFPE-ID-636_2020-01-28_13-43-56/CPDR-FFPE-ID-636.skyd into the system

11 May 2020 16:31:44,097 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80287/CPDR-FFPE-ID-636_2020-01-28_13-43-56/CPDR-FFPE-ID-636.skyd into the system

11 May 2020 16:31:44,097 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80287/CPDR-FFPE-ID-636_2020-01-28_13-43-56.sky.zip into the system

11 May 2020 16:31:44,101 INFO : Starting import from CPDR-FFPE-ID-636_2020-01-28_13-43-56.sky.zip

11 May 2020 16:31:44,109 INFO : Starting to import Skyline document from CPDR-FFPE-ID-636_2020-01-28_13-43-56.sky.zip

11 May 2020 16:31:44,124 INFO : Expanding CPDR-FFPE-ID-636.skyd

11 May 2020 16:31:44,451 INFO : Expanding CPDR-FFPE-ID-636.sky.view

11 May 2020 16:31:44,451 INFO : Expanding CPDR-FFPE-ID-636.sky

11 May 2020 16:31:44,461 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1

11 May 2020 16:31:44,464 INFO : 6% Done

11 May 2020 16:31:44,828 INFO : Inserting ANXA2

11 May 2020 16:31:44,836 INFO : 13% Done

11 May 2020 16:31:44,940 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:44,941 INFO : Inserting CAMKK2

11 May 2020 16:31:44,943 INFO : 17% Done

11 May 2020 16:31:45,046 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:45,046 INFO : Inserting CCND1

11 May 2020 16:31:45,049 INFO : 22% Done

11 May 2020 16:31:45,135 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:45,135 INFO : Inserting EGFR

11 May 2020 16:31:45,139 INFO : 32% Done

11 May 2020 16:31:45,339 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:45,340 INFO : Inserting ERG_pan

11 May 2020 16:31:45,343 INFO : 41% Done

11 May 2020 16:31:45,513 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:45,514 INFO : Inserting FOLH1

11 May 2020 16:31:45,517 INFO : 47% Done

11 May 2020 16:31:45,654 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:45,655 INFO : Inserting MMP9

11 May 2020 16:31:45,659 INFO : 59% Done

11 May 2020 16:31:45,865 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:45,865 INFO : Inserting MUC1

11 May 2020 16:31:45,868 INFO : 66% Done

11 May 2020 16:31:45,996 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:45,997 INFO : Inserting NCOA2

11 May 2020 16:31:45,999 INFO : 72% Done

11 May 2020 16:31:46,090 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:46,090 INFO : Inserting PSA

11 May 2020 16:31:46,092 INFO : 75% Done

11 May 2020 16:31:46,176 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:46,177 INFO : Inserting SMAD4

11 May 2020 16:31:46,179 INFO : 79% Done

11 May 2020 16:31:46,259 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:46,259 INFO : Inserting SPINK1

11 May 2020 16:31:46,262 INFO : 83% Done

11 May 2020 16:31:46,334 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:46,334 INFO : Inserting SPRC

11 May 2020 16:31:46,336 INFO : 86% Done

11 May 2020 16:31:46,406 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:46,406 INFO : 87% Done

11 May 2020 16:31:46,406 INFO : Inserting TFF3

11 May 2020 16:31:46,408 INFO : 91% Done

11 May 2020 16:31:46,490 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:46,490 INFO : Inserting TGFB1

11 May 2020 16:31:46,492 INFO : 93% Done

11 May 2020 16:31:46,535 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:46,536 INFO : Inserting VEGFA

11 May 2020 16:31:46,538 INFO : 98% Done

11 May 2020 16:31:46,639 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:46,639 INFO : Done parsing Skyline document.

11 May 2020 16:31:46,641 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:31:46,672 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:31:46,755 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:31:46,787 INFO : Cleaning up temp tables

11 May 2020 16:31:47,145 INFO : Completed import of Skyline document from CPDR-FFPE-ID-636_2020-01-28_13-43-56.sky.zip

11 May 2020 16:31:47,146 INFO : 100% Done

11 May 2020 16:31:47,159 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80287/CPDR-FFPE-ID-636_2020-01-28_13-43-56.sky.zip into the system

11 May 2020 16:31:47,159 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80440/CPDR-FFPE-ID-1689_2020-01-29_12-40-48/CPDR-FFPE-ID-1689.skyd into the system

11 May 2020 16:31:47,160 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80440/CPDR-FFPE-ID-1689_2020-01-29_12-40-48/CPDR-FFPE-ID-1689.skyd into the system

11 May 2020 16:31:47,160 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80440/CPDR-FFPE-ID-1689_2020-01-29_12-40-48.sky.zip into the system

11 May 2020 16:31:47,165 INFO : Starting import from CPDR-FFPE-ID-1689_2020-01-29_12-40-48.sky.zip

11 May 2020 16:31:47,172 INFO : Starting to import Skyline document from CPDR-FFPE-ID-1689_2020-01-29_12-40-48.sky.zip

11 May 2020 16:31:47,181 INFO : Expanding CPDR-FFPE-ID-1689.skyd

11 May 2020 16:31:47,426 INFO : Expanding CPDR-FFPE-ID-1689.sky.view

11 May 2020 16:31:47,427 INFO : Expanding CPDR-FFPE-ID-1689.sky

11 May 2020 16:31:47,436 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:31:47,439 INFO : 6% Done

11 May 2020 16:31:47,671 INFO : Inserting ANXA2

11 May 2020 16:31:47,679 INFO : 13% Done

11 May 2020 16:31:47,783 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:47,783 INFO : Inserting CAMKK2

11 May 2020 16:31:47,786 INFO : 21% Done

11 May 2020 16:31:47,895 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:47,895 INFO : Inserting CCND1

11 May 2020 16:31:47,897 INFO : 27% Done

11 May 2020 16:31:47,989 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:47,989 INFO : Inserting EGFR

11 May 2020 16:31:47,992 INFO : 32% Done

11 May 2020 16:31:48,088 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:48,088 INFO : Inserting ERG_pan

11 May 2020 16:31:48,091 INFO : 41% Done

11 May 2020 16:31:48,217 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:48,217 INFO : 42% Done

11 May 2020 16:31:48,217 INFO : Inserting FOLH1

11 May 2020 16:31:48,219 INFO : 45% Done

11 May 2020 16:31:48,285 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:48,285 INFO : Inserting MMP9

11 May 2020 16:31:48,288 INFO : 54% Done

11 May 2020 16:31:48,405 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:48,405 INFO : Inserting MUC1

11 May 2020 16:31:48,408 INFO : 60% Done

11 May 2020 16:31:48,503 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:48,503 INFO : Inserting NCOA2

11 May 2020 16:31:48,506 INFO : 66% Done

11 May 2020 16:31:48,597 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:48,597 INFO : Inserting PSA

11 May 2020 16:31:48,599 INFO : 71% Done

11 May 2020 16:31:48,655 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:48,656 INFO : Inserting SMAD4

11 May 2020 16:31:48,658 INFO : 75% Done

11 May 2020 16:31:48,734 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:48,734 INFO : Inserting SPINK1

11 May 2020 16:31:48,736 INFO : 80% Done

11 May 2020 16:31:48,813 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:48,813 INFO : Inserting SPRC

11 May 2020 16:31:48,815 INFO : 85% Done

11 May 2020 16:31:48,891 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:48,891 INFO : Inserting TFF3

11 May 2020 16:31:48,893 INFO : 89% Done

11 May 2020 16:31:48,953 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:48,953 INFO : Inserting TGFB1

11 May 2020 16:31:48,954 INFO : 91% Done

11 May 2020 16:31:48,985 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:48,985 INFO : Inserting VEGFA

11 May 2020 16:31:48,988 INFO : 98% Done

11 May 2020 16:31:49,097 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:49,097 INFO : Done parsing Skyline document.

11 May 2020 16:31:49,099 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:31:49,128 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:31:49,199 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:31:49,225 INFO : Cleaning up temp tables

11 May 2020 16:31:49,635 INFO : Completed import of Skyline document from CPDR-FFPE-ID-1689_2020-01-29_12-40-48.sky.zip

11 May 2020 16:31:49,637 INFO : 100% Done

11 May 2020 16:31:49,649 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80440/CPDR-FFPE-ID-1689_2020-01-29_12-40-48.sky.zip into the system

11 May 2020 16:31:49,649 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80477/CPDR-FFPE-ID-1376_2020-01-29_14-56-40/CPDR-FFPE-ID-1376.skyd into the system

11 May 2020 16:31:49,651 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80477/CPDR-FFPE-ID-1376_2020-01-29_14-56-40/CPDR-FFPE-ID-1376.skyd into the system

11 May 2020 16:31:49,651 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80477/CPDR-FFPE-ID-1376_2020-01-29_14-56-40.sky.zip into the system

11 May 2020 16:31:49,655 INFO : Starting import from CPDR-FFPE-ID-1376_2020-01-29_14-56-40.sky.zip

11 May 2020 16:31:49,662 INFO : Starting to import Skyline document from CPDR-FFPE-ID-1376_2020-01-29_14-56-40.sky.zip

11 May 2020 16:31:49,672 INFO : Expanding CPDR-FFPE-ID-1376.skyd

11 May 2020 16:31:49,940 INFO : Expanding CPDR-FFPE-ID-1376.sky.view

11 May 2020 16:31:49,941 INFO : Expanding CPDR-FFPE-ID-1376.sky

11 May 2020 16:31:49,950 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 16:31:49,953 INFO : 6% Done

11 May 2020 16:31:50,252 INFO : Inserting ANXA2

11 May 2020 16:31:50,260 INFO : 13% Done

11 May 2020 16:31:50,368 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:50,368 INFO : Inserting CAMKK2

11 May 2020 16:31:50,371 INFO : 21% Done

11 May 2020 16:31:50,526 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:50,526 INFO : Inserting CCND1

11 May 2020 16:31:50,529 INFO : 27% Done

11 May 2020 16:31:50,627 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:50,627 INFO : Inserting EGFR

11 May 2020 16:31:50,630 INFO : 33% Done

11 May 2020 16:31:50,725 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:50,726 INFO : Inserting ERG_pan

11 May 2020 16:31:50,728 INFO : 39% Done

11 May 2020 16:31:50,825 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:50,826 INFO : Inserting FOLH1

11 May 2020 16:31:50,828 INFO : 43% Done

11 May 2020 16:31:50,890 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:50,890 INFO : Inserting MMP9

11 May 2020 16:31:50,893 INFO : 52% Done

11 May 2020 16:31:51,036 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:51,036 INFO : Inserting MUC1

11 May 2020 16:31:51,039 INFO : 58% Done

11 May 2020 16:31:51,136 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:51,136 INFO : Inserting NCOA2

11 May 2020 16:31:51,139 INFO : 64% Done

11 May 2020 16:31:51,237 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:51,237 INFO : Inserting PSA

11 May 2020 16:31:51,239 INFO : 69% Done

11 May 2020 16:31:51,320 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:51,320 INFO : 70% Done

11 May 2020 16:31:51,320 INFO : Inserting SMAD4

11 May 2020 16:31:51,323 INFO : 74% Done

11 May 2020 16:31:51,407 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:51,407 INFO : Inserting SPINK1

11 May 2020 16:31:51,410 INFO : 79% Done

11 May 2020 16:31:51,498 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:51,499 INFO : Inserting SPRC

11 May 2020 16:31:51,501 INFO : 84% Done

11 May 2020 16:31:51,588 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:51,588 INFO : Inserting TFF3

11 May 2020 16:31:51,591 INFO : 90% Done

11 May 2020 16:31:51,674 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:51,674 INFO : Inserting TGFB1

11 May 2020 16:31:51,676 INFO : 91% Done

11 May 2020 16:31:51,705 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:51,705 INFO : Inserting VEGFA

11 May 2020 16:31:51,708 INFO : 98% Done

11 May 2020 16:31:51,833 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:51,833 INFO : Done parsing Skyline document.

11 May 2020 16:31:51,835 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:31:51,865 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:31:51,941 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:31:51,970 INFO : Cleaning up temp tables

11 May 2020 16:31:52,250 INFO : Completed import of Skyline document from CPDR-FFPE-ID-1376_2020-01-29_14-56-40.sky.zip

11 May 2020 16:31:52,252 INFO : 100% Done

11 May 2020 16:31:52,262 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80477/CPDR-FFPE-ID-1376_2020-01-29_14-56-40.sky.zip into the system

11 May 2020 16:31:52,262 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80442/CPDR-FFPE-ID-1250_2020-01-29_12-41-18/CPDR-FFPE-ID-1250.skyd into the system

11 May 2020 16:31:52,262 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80442/CPDR-FFPE-ID-1250_2020-01-29_12-41-18/CPDR-FFPE-ID-1250.skyd into the system

11 May 2020 16:31:52,262 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80442/CPDR-FFPE-ID-1250_2020-01-29_12-41-18.sky.zip into the system

11 May 2020 16:31:52,266 INFO : Starting import from CPDR-FFPE-ID-1250_2020-01-29_12-41-18.sky.zip

11 May 2020 16:31:52,272 INFO : Starting to import Skyline document from CPDR-FFPE-ID-1250_2020-01-29_12-41-18.sky.zip

11 May 2020 16:31:52,277 INFO : Expanding CPDR-FFPE-ID-1250.skyd

11 May 2020 16:31:52,399 INFO : Expanding CPDR-FFPE-ID-1250.sky.view

11 May 2020 16:31:52,399 INFO : Expanding CPDR-FFPE-ID-1250.sky

11 May 2020 16:31:52,404 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:31:52,406 INFO : 5% Done

11 May 2020 16:31:52,652 INFO : Inserting ANXA2

11 May 2020 16:31:52,660 INFO : 14% Done

11 May 2020 16:31:52,778 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:52,778 INFO : Inserting CAMKK2

11 May 2020 16:31:52,782 INFO : 21% Done

11 May 2020 16:31:52,918 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:52,918 INFO : Inserting CCND1

11 May 2020 16:31:52,921 INFO : 26% Done

11 May 2020 16:31:53,035 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:53,035 INFO : Inserting EGFR

11 May 2020 16:31:53,037 INFO : 34% Done

11 May 2020 16:31:53,130 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:53,130 INFO : Inserting ERG_pan

11 May 2020 16:31:53,132 INFO : 40% Done

11 May 2020 16:31:53,225 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:53,225 INFO : Inserting FOLH1

11 May 2020 16:31:53,226 INFO : 44% Done

11 May 2020 16:31:53,286 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:53,286 INFO : Inserting MMP9

11 May 2020 16:31:53,288 INFO : 53% Done

11 May 2020 16:31:53,418 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:53,418 INFO : Inserting MUC1

11 May 2020 16:31:53,420 INFO : 58% Done

11 May 2020 16:31:53,498 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:53,498 INFO : 59% Done

11 May 2020 16:31:53,498 INFO : Inserting NCOA2

11 May 2020 16:31:53,500 INFO : 66% Done

11 May 2020 16:31:53,587 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:53,587 INFO : Inserting PSA

11 May 2020 16:31:53,588 INFO : 69% Done

11 May 2020 16:31:53,632 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:53,632 INFO : Inserting SMAD4

11 May 2020 16:31:53,634 INFO : 74% Done

11 May 2020 16:31:53,708 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:53,708 INFO : Inserting SPINK1

11 May 2020 16:31:53,709 INFO : 79% Done

11 May 2020 16:31:53,775 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:53,775 INFO : Inserting SPRC

11 May 2020 16:31:53,777 INFO : 85% Done

11 May 2020 16:31:53,835 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:53,835 INFO : Inserting TFF3

11 May 2020 16:31:53,836 INFO : 88% Done

11 May 2020 16:31:53,886 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:53,886 INFO : 89% Done

11 May 2020 16:31:53,886 INFO : Inserting TGFB1

11 May 2020 16:31:53,887 INFO : 90% Done

11 May 2020 16:31:53,912 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:53,912 INFO : Inserting VEGFA

11 May 2020 16:31:53,913 INFO : 98% Done

11 May 2020 16:31:54,016 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:54,016 INFO : Done parsing Skyline document.

11 May 2020 16:31:54,018 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:31:54,030 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:31:54,062 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:31:54,075 INFO : Cleaning up temp tables

11 May 2020 16:31:54,322 INFO : Completed import of Skyline document from CPDR-FFPE-ID-1250_2020-01-29_12-41-18.sky.zip

11 May 2020 16:31:54,323 INFO : 100% Done

11 May 2020 16:31:54,328 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80442/CPDR-FFPE-ID-1250_2020-01-29_12-41-18.sky.zip into the system

11 May 2020 16:31:54,328 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80443/CPDR-FFPE-ID-859_2020-01-29_12-41-32/CPDR-FFPE-ID-859.skyd into the system

11 May 2020 16:31:54,328 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80443/CPDR-FFPE-ID-859_2020-01-29_12-41-32/CPDR-FFPE-ID-859.skyd into the system

11 May 2020 16:31:54,328 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80443/CPDR-FFPE-ID-859_2020-01-29_12-41-32.sky.zip into the system

11 May 2020 16:31:54,330 INFO : Starting import from CPDR-FFPE-ID-859_2020-01-29_12-41-32.sky.zip

11 May 2020 16:31:54,333 INFO : Starting to import Skyline document from CPDR-FFPE-ID-859_2020-01-29_12-41-32.sky.zip

11 May 2020 16:31:54,338 INFO : Expanding CPDR-FFPE-ID-859.skyd

11 May 2020 16:31:54,427 INFO : Expanding CPDR-FFPE-ID-859.sky.view

11 May 2020 16:31:54,428 INFO : Expanding CPDR-FFPE-ID-859.sky

11 May 2020 16:31:54,432 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:31:54,433 INFO : 5% Done

11 May 2020 16:31:54,651 INFO : Inserting ANXA2

11 May 2020 16:31:54,657 INFO : 13% Done

11 May 2020 16:31:54,711 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:54,711 INFO : Inserting CAMKK2

11 May 2020 16:31:54,713 INFO : 20% Done

11 May 2020 16:31:54,771 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:54,771 INFO : Inserting CCND1

11 May 2020 16:31:54,774 INFO : 25% Done

11 May 2020 16:31:54,826 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:54,826 INFO : Inserting EGFR

11 May 2020 16:31:54,828 INFO : 31% Done

11 May 2020 16:31:54,875 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:54,876 INFO : Inserting ERG_pan

11 May 2020 16:31:54,878 INFO : 39% Done

11 May 2020 16:31:54,949 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:54,949 INFO : 40% Done

11 May 2020 16:31:54,949 INFO : Inserting FOLH1

11 May 2020 16:31:54,951 INFO : 45% Done

11 May 2020 16:31:54,994 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:54,994 INFO : Inserting MMP9

11 May 2020 16:31:54,997 INFO : 52% Done

11 May 2020 16:31:55,046 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:55,046 INFO : Inserting MUC1

11 May 2020 16:31:55,047 INFO : 58% Done

11 May 2020 16:31:55,085 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:55,085 INFO : Inserting NCOA2

11 May 2020 16:31:55,086 INFO : 64% Done

11 May 2020 16:31:55,119 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:55,119 INFO : Inserting PSA

11 May 2020 16:31:55,120 INFO : 69% Done

11 May 2020 16:31:55,145 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:55,145 INFO : Inserting SMAD4

11 May 2020 16:31:55,147 INFO : 74% Done

11 May 2020 16:31:55,179 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:55,179 INFO : Inserting SPINK1

11 May 2020 16:31:55,180 INFO : 79% Done

11 May 2020 16:31:55,213 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:55,214 INFO : Inserting SPRC

11 May 2020 16:31:55,215 INFO : 83% Done

11 May 2020 16:31:55,249 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:55,249 INFO : Inserting TFF3

11 May 2020 16:31:55,250 INFO : 88% Done

11 May 2020 16:31:55,278 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:55,278 INFO : Inserting TGFB1

11 May 2020 16:31:55,280 INFO : 91% Done

11 May 2020 16:31:55,296 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:55,296 INFO : Inserting VEGFA

11 May 2020 16:31:55,298 INFO : 98% Done

11 May 2020 16:31:55,346 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:55,346 INFO : Done parsing Skyline document.

11 May 2020 16:31:55,347 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:31:55,360 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:31:55,820 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:31:55,903 INFO : Cleaning up temp tables

11 May 2020 16:31:56,162 INFO : Completed import of Skyline document from CPDR-FFPE-ID-859_2020-01-29_12-41-32.sky.zip

11 May 2020 16:31:56,163 INFO : 100% Done

11 May 2020 16:31:56,168 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80443/CPDR-FFPE-ID-859_2020-01-29_12-41-32.sky.zip into the system

11 May 2020 16:31:56,168 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80445/CPDR-FFPE-ID-1193_2020-01-29_12-44-32/CPDR-FFPE-ID-1193.skyd into the system

11 May 2020 16:31:56,169 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80445/CPDR-FFPE-ID-1193_2020-01-29_12-44-32/CPDR-FFPE-ID-1193.skyd into the system

11 May 2020 16:31:56,169 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80445/CPDR-FFPE-ID-1193_2020-01-29_12-44-32.sky.zip into the system

11 May 2020 16:31:56,171 INFO : Starting import from CPDR-FFPE-ID-1193_2020-01-29_12-44-32.sky.zip

11 May 2020 16:31:56,175 INFO : Starting to import Skyline document from CPDR-FFPE-ID-1193_2020-01-29_12-44-32.sky.zip

11 May 2020 16:31:56,179 INFO : Expanding CPDR-FFPE-ID-1193.skyd

11 May 2020 16:31:56,273 INFO : Expanding CPDR-FFPE-ID-1193.sky.view

11 May 2020 16:31:56,273 INFO : Expanding CPDR-FFPE-ID-1193.sky

11 May 2020 16:31:56,278 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1

11 May 2020 16:31:56,279 INFO : 5% Done

11 May 2020 16:31:56,373 INFO : Inserting ANXA2

11 May 2020 16:31:56,376 INFO : 15% Done

11 May 2020 16:31:56,425 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:56,425 INFO : Inserting CAMKK2

11 May 2020 16:31:56,427 INFO : 20% Done

11 May 2020 16:31:56,469 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:56,469 INFO : Inserting CCND1

11 May 2020 16:31:56,470 INFO : 27% Done

11 May 2020 16:31:56,518 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:56,518 INFO : Inserting EGFR

11 May 2020 16:31:56,519 INFO : 33% Done

11 May 2020 16:31:56,557 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:56,557 INFO : Inserting ERG_pan

11 May 2020 16:31:56,558 INFO : 40% Done

11 May 2020 16:31:56,598 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:56,598 INFO : Inserting FOLH1

11 May 2020 16:31:56,599 INFO : 43% Done

11 May 2020 16:31:56,624 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:56,624 INFO : Inserting MMP9

11 May 2020 16:31:56,626 INFO : 50% Done

11 May 2020 16:31:56,673 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:56,673 INFO : Inserting MUC1

11 May 2020 16:31:56,674 INFO : 54% Done

11 May 2020 16:31:56,705 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:56,705 INFO : Inserting NCOA2

11 May 2020 16:31:56,707 INFO : 62% Done

11 May 2020 16:31:56,756 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:56,756 INFO : Inserting PSA

11 May 2020 16:31:56,757 INFO : 67% Done

11 May 2020 16:31:56,785 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:56,786 INFO : Inserting SMAD4

11 May 2020 16:31:56,787 INFO : 72% Done

11 May 2020 16:31:56,827 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:56,827 INFO : Inserting SPINK1

11 May 2020 16:31:56,829 INFO : 77% Done

11 May 2020 16:31:56,866 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:56,866 INFO : Inserting SPRC

11 May 2020 16:31:56,867 INFO : 83% Done

11 May 2020 16:31:56,906 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:56,906 INFO : Inserting TFF3

11 May 2020 16:31:56,907 INFO : 87% Done

11 May 2020 16:31:56,939 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:56,939 INFO : 88% Done

11 May 2020 16:31:56,939 INFO : Inserting TGFB1

11 May 2020 16:31:56,940 INFO : 89% Done

11 May 2020 16:31:56,954 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:56,954 INFO : 90% Done

11 May 2020 16:31:56,954 INFO : Inserting VEGFA

11 May 2020 16:31:56,956 INFO : 98% Done

11 May 2020 16:31:57,013 DEBUG: Total peptides inserted: 1

11 May 2020 16:31:57,013 INFO : Done parsing Skyline document.

11 May 2020 16:31:57,015 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:31:57,027 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:31:57,072 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:31:57,083 INFO : Cleaning up temp tables

11 May 2020 16:31:57,333 INFO : Completed import of Skyline document from CPDR-FFPE-ID-1193_2020-01-29_12-44-32.sky.zip

11 May 2020 16:31:57,334 INFO : 100% Done

11 May 2020 16:31:57,340 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80445/CPDR-FFPE-ID-1193_2020-01-29_12-44-32.sky.zip into the system

11 May 2020 16:31:58,140 INFO : Done importing xar

11 May 2020 16:31:58,143 INFO : Loading pages and webpart properties

11 May 2020 16:31:58,276 INFO : Done importing pages and webpart properties

11 May 2020 16:31:58,276 INFO : Done importing folder archive for Batch2_16_proteins

11 May 2020 16:31:58,356 INFO : New container created with inherited permissions for Response_Curve_16_proteins

11 May 2020 16:31:58,356 INFO : Loading folder archive for Response_Curve_16_proteins

11 May 2020 16:31:58,359 INFO : Loading folder properties (folder type, settings and active modules)

11 May 2020 16:31:58,432 INFO : Done importing folder properties (folder type, settings and active modules)

11 May 2020 16:31:58,436 INFO : Loading etl definitions

11 May 2020 16:31:58,439 INFO : Loading wikis

11 May 2020 16:31:58,455 INFO : 0 wikis imported

11 May 2020 16:31:58,455 INFO : Done importing wikis

11 May 2020 16:31:58,456 INFO : Starting to copy files

11 May 2020 16:33:59,158 INFO : 577 files copied, now copying CPDR-FFPE-ID-306.sky

11 May 2020 16:33:59,332 INFO : 578 files copied, now copying CPDR-FFPE-ID-346.skyd

11 May 2020 16:33:59,911 INFO : 581 files copied, now copying CPDR-FFPE-ID-2_seg2.sky.view

11 May 2020 16:34:00,472 INFO : 584 files copied, now copying CPDR-FFPE-ID-620_seg2.sky

11 May 2020 16:34:00,993 INFO : 587 files copied, now copying ResponseCurve-NCOA2-LLQDSSSPVDLAK.sky

11 May 2020 16:34:01,405 INFO : 590 files copied, now copying CPDR-FFPE-ID-728_seg2.sky.view

11 May 2020 16:34:01,912 INFO : 593 files copied, now copying CPDR-FFPE-ID-374.skyd

11 May 2020 16:34:02,487 INFO : 596 files copied, now copying CPDR-FFPE-ID-316.skyd

11 May 2020 16:34:03,069 INFO : 599 files copied, now copying CPDR-FFPE-ID-253.skyd

11 May 2020 16:34:03,682 INFO : 602 files copied, now copying CPDR-FFPE-ID-325.sky

11 May 2020 16:34:04,249 INFO : 605 files copied, now copying ResponseCurve-ERG_pan-VIVPADPTLWSTDHVR.sky

11 May 2020 16:34:04,696 INFO : 608 files copied, now copying CPDR-FFPE-ID-159_seg1.sky

11 May 2020 16:34:05,419 INFO : 611 files copied, now copying CPDR-FFPE-ID-304_seg1.skyd

11 May 2020 16:34:06,369 INFO : 614 files copied, now copying CPDR-FFPE-ID-152_seg2.sky

11 May 2020 16:34:06,919 INFO : 617 files copied, now copying CPDR-FFPE-ID-243.sky

11 May 2020 16:34:07,493 INFO : 620 files copied, now copying CPDR-FFPE-ID-745_seg1.sky.view

11 May 2020 16:34:08,065 INFO : 623 files copied, now copying CPDR-FFPE-ID-16_seg2.sky.view

11 May 2020 16:34:08,598 INFO : 626 files copied, now copying CPDR-FFPE-ID-246.sky

11 May 2020 16:34:09,140 INFO : 629 files copied, now copying CPDR-FFPE-ID-2_seg1.skyd

11 May 2020 16:34:09,620 INFO : 632 files copied, now copying CPDR-FFPE-ID-14_seg2.skyd

11 May 2020 16:34:10,138 INFO : 635 files copied, now copying ResponseCurve-TGFB1-GGEIEGFR.sky.view

11 May 2020 16:34:10,521 INFO : 638 files copied, now copying ResponseCurve-VEGFA-FMDVYQR.sky.view

11 May 2020 16:34:10,905 INFO : 641 files copied, now copying CPDR-FFPE-ID-56_seg2.sky

11 May 2020 16:34:11,493 INFO : 644 files copied, now copying CPDR-FFPE-ID-310.sky.view

11 May 2020 16:34:12,059 INFO : 647 files copied, now copying ResponseCurve-MUC1-DISEMFLQIYK.sky

11 May 2020 16:34:12,343 INFO : 650 files copied, now copying CPDR-FFPE-ID-376.sky

11 May 2020 16:34:12,889 INFO : 653 files copied, now copying CPDR-FFPE-ID-209.skyd

11 May 2020 16:34:13,438 INFO : 656 files copied, now copying CPDR-FFPE-ID-13_seg1.sky

11 May 2020 16:34:13,919 INFO : 659 files copied, now copying CPDR-FFPE-ID-267.skyd

11 May 2020 16:34:14,456 INFO : 662 files copied, now copying CPDR-FFPE-ID-500_seg1.sky

11 May 2020 16:34:15,294 INFO : 665 files copied, now copying CPDR-FFPE-ID-234.skyd

11 May 2020 16:34:15,809 INFO : 668 files copied, now copying CPDR-FFPE-ID-13_seg2.skyd

11 May 2020 16:34:16,303 INFO : 671 files copied, now copying CPDR-FFPE-ID-362_seg1.skyd

11 May 2020 16:34:16,834 INFO : 674 files copied, now copying CPDR-FFPE-ID-91_seg2.skyd

11 May 2020 16:34:17,355 INFO : 677 files copied, now copying CPDR-FFPE-ID-416.skyd

11 May 2020 16:34:17,929 INFO : 680 files copied, now copying CPDR-FFPE-ID-89_seg2.sky.view

11 May 2020 16:34:18,435 INFO : 683 files copied, now copying CPDR-FFPE-ID-86.sky

11 May 2020 16:34:19,015 INFO : 686 files copied, now copying CPDR-FFPE-ID-313.sky

11 May 2020 16:34:19,574 INFO : 689 files copied, now copying CPDR-FFPE-ID-105_seg1.sky

11 May 2020 16:34:20,256 INFO : 692 files copied, now copying CPDR-FFPE-ID-304_seg2.sky.view

11 May 2020 16:34:20,915 INFO : 695 files copied, now copying ResponseCurve-ANXA2-GLGTDEDSLIEIICSR.sky

11 May 2020 16:34:21,316 INFO : 698 files copied, now copying CPDR-FFPE-ID-82_seg2.sky

11 May 2020 16:34:21,829 INFO : 701 files copied, now copying CPDR-FFPE-ID-334.sky

11 May 2020 16:34:22,445 INFO : 704 files copied, now copying CPDR-FFPE-ID-217.sky.view

11 May 2020 16:34:23,036 INFO : 707 files copied, now copying ResponseCurve-SPRC-LEAGDHPVELLAR.sky

11 May 2020 16:34:23,451 INFO : 710 files copied, now copying CPDR-FFPE-ID-390.sky.view

11 May 2020 16:34:24,032 INFO : 713 files copied, now copying CPDR-FFPE-ID-991_seg1.skyd

11 May 2020 16:34:24,695 INFO : 716 files copied, now copying CPDR-FFPE-ID-338.sky

11 May 2020 16:34:25,250 INFO : 719 files copied, now copying CPDR-FFPE-ID-411.sky

11 May 2020 16:34:25,813 INFO : 722 files copied, now copying CPDR-FFPE-ID-320.sky.view

11 May 2020 16:34:26,423 INFO : 725 files copied, now copying ResponseCurve-SPINK1-QTSILIQK.sky

11 May 2020 16:34:26,747 INFO : 728 files copied, now copying CPDR-FFPE-ID-207.sky

11 May 2020 16:34:27,318 INFO : 731 files copied, now copying CPDR-FFPE-ID-535.skyd

11 May 2020 16:34:27,562 INFO : 734 files copied, now copying CPDR-FFPE-ID-8_seg2.skyd

11 May 2020 16:34:28,126 INFO : 737 files copied, now copying CPDR-FFPE-ID-141_seg1.sky.view

11 May 2020 16:34:28,795 INFO : 740 files copied, now copying CPDR-FFPE-ID-203.sky

11 May 2020 16:34:29,362 INFO : 743 files copied, now copying ResponseCurve-EGFR-LTQLGTFEDHFLSLQR.sky

11 May 2020 16:34:29,707 INFO : 746 files copied, now copying CPDR-FFPE-ID-91_seg1.skyd

11 May 2020 16:34:30,159 INFO : 749 files copied, now copying CPDR-FFPE-ID-991_seg2.sky

11 May 2020 16:34:30,652 INFO : 752 files copied, now copying ResponseCurve-PSA-LSEPAETDAVK.sky

11 May 2020 16:34:31,132 INFO : 755 files copied, now copying CPDR-FFPE-ID-345.skyd

11 May 2020 16:34:31,746 INFO : 758 files copied, now copying ResponseCurve-MMP9-LGLGADVAQVTGALR.sky.view

11 May 2020 16:34:32,144 INFO : 761 files copied, now copying CPDR-FFPE-ID-167_seg1.sky

11 May 2020 16:34:32,728 INFO : 764 files copied, now copying ResponseCurve-CAMKK2-SLSAPGNLLTK.skyd

11 May 2020 16:34:33,132 INFO : 767 files copied, now copying CPDR-FFPE-ID-141_seg2.sky.view

11 May 2020 16:34:33,581 INFO : 770 files copied, now copying CPDR-FFPE-ID-105_seg2.skyd

11 May 2020 16:34:34,141 INFO : 773 files copied, now copying CPDR-FFPE-ID-364.sky.view

11 May 2020 16:34:34,736 INFO : 776 files copied, now copying CPDR-FFPE-ID-214.sky

11 May 2020 16:34:35,287 INFO : 779 files copied, now copying CPDR-FFPE-ID-116.skyd

11 May 2020 16:34:35,789 INFO : 782 files copied, now copying CPDR-FFPE-ID-249.sky

11 May 2020 16:34:36,396 INFO : 785 files copied, now copying CPDR-FFPE-ID-66_seg2.sky

11 May 2020 16:34:36,909 INFO : 788 files copied, now copying CPDR-FFPE-ID-167_seg2.sky

11 May 2020 16:34:37,458 INFO : 791 files copied, now copying ResponseCurve-SPRC-LEAGDHPVELLAR.sky

11 May 2020 16:34:37,852 INFO : 794 files copied, now copying CPDR-FFPE-ID-361_seg1.sky

11 May 2020 16:34:38,497 INFO : 797 files copied, now copying CPDR-FFPE-ID-347.skyd

11 May 2020 16:34:39,058 INFO : 800 files copied, now copying CPDR-FFPE-ID-90_seg1.sky.view

11 May 2020 16:34:39,630 INFO : 803 files copied, now copying CPDR-FFPE-ID-40.sky.view

11 May 2020 16:34:40,313 INFO : 806 files copied, now copying CPDR-FFPE-ID-9_seg1.sky

11 May 2020 16:34:40,912 INFO : 809 files copied, now copying CPDR-FFPE-ID-361_seg2.sky

11 May 2020 16:34:41,424 INFO : 812 files copied, now copying CPDR-FFPE-ID-620_seg1.skyd

11 May 2020 16:34:42,088 INFO : Copied 815 files

11 May 2020 16:34:42,088 INFO : Ensuring exp.data rows exist for imported files

11 May 2020 16:34:57,253 INFO : Loading xar

11 May 2020 16:35:09,270 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip'

11 May 2020 16:35:09,273 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:35:09,276 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:35:09,276 DEBUG: Protocol import complete

11 May 2020 16:35:09,289 DEBUG: Protocol action set import complete

11 May 2020 16:35:09,311 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip'

11 May 2020 16:35:09,323 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6996:b10996e0-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,328 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6996:b10996c8-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,328 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:35:09,332 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:35:09,333 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6996:b10996fd-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,339 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip'

11 May 2020 16:35:09,345 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6996:b10992e5-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,349 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6996:b10992cb-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,350 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:35:09,352 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:35:09,353 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6996:b1099304-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,358 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip'

11 May 2020 16:35:09,364 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6996:b10990d2-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,384 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6996:b10990b8-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,384 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:35:09,387 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:35:09,388 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6996:b109910f-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,404 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip'

11 May 2020 16:35:09,411 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6996:b1098c26-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,415 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6996:b1098c0c-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,415 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:35:09,418 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:35:09,418 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6996:b1098c69-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,423 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip'

11 May 2020 16:35:09,428 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6996:b1098a14-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,432 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6996:b10989fb-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,432 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:35:09,434 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:35:09,435 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6996:b1098a30-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,439 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip'

11 May 2020 16:35:09,444 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6996:b109953f-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,449 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6996:b1099514-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,449 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:35:09,451 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:35:09,451 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6996:b1099584-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,455 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip'

11 May 2020 16:35:09,461 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6996:b10993be-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,465 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6996:b1099380-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,465 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:35:09,467 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:35:09,467 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6996:b10993d6-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,472 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip'

11 May 2020 16:35:09,476 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6996:b109923c-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,480 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6996:b109921d-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,480 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:35:09,483 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:35:09,483 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6996:b1099259-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,487 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip'

11 May 2020 16:35:09,492 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6996:b1098f62-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,496 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6996:b1098f24-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,496 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:35:09,498 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:35:09,499 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6996:b1098f82-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,503 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip'

11 May 2020 16:35:09,508 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6996:b1098dc0-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,514 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6996:b1098da5-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,514 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:35:09,518 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:35:09,520 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6996:b1098df5-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,529 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip'

11 May 2020 16:35:09,540 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6996:b1099177-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,550 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6996:b109915e-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,550 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:35:09,554 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:35:09,556 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6996:b10991ab-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,565 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip'

11 May 2020 16:35:09,576 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6996:b1099031-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,586 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6996:b1099015-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,586 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:35:09,591 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:35:09,592 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6996:b1099048-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,601 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip'

11 May 2020 16:35:09,612 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6996:b1098e91-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,622 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6996:b1098e79-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,622 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:35:09,627 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:35:09,628 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6996:b1098ed4-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,653 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip'

11 May 2020 16:35:09,665 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6996:b1098d01-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,675 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6996:b1098ce9-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,676 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:35:09,681 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:35:09,682 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6996:b1098d21-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,692 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip'

11 May 2020 16:35:09,704 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6996:b1098adb-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,714 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6996:b1098ac1-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,714 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:35:09,720 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:35:09,721 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6996:b1098b15-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,743 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip'

11 May 2020 16:35:09,755 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-6996:b1098b84-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,765 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-6996:b1098b6b-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,765 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip.Core'

11 May 2020 16:35:09,771 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-6996:TargetedMS.ImportSkyZip.Output'

11 May 2020 16:35:09,772 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-6996:b1098bc2-2423-1038-b289-3013bb9ba57c'

11 May 2020 16:35:09,775 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80047/ResponseCurve-ANXA2-GLGTDEDSLIEIICSR_2020-01-28_09-49-31/ResponseCurve-ANXA2-GLGTDEDSLIEIICSR.skyd into the system

11 May 2020 16:35:09,777 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80047/ResponseCurve-ANXA2-GLGTDEDSLIEIICSR_2020-01-28_09-49-31/ResponseCurve-ANXA2-GLGTDEDSLIEIICSR.skyd into the system

11 May 2020 16:35:09,777 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80047/ResponseCurve-ANXA2-GLGTDEDSLIEIICSR_2020-01-28_09-49-31.sky.zip into the system

11 May 2020 16:35:09,781 INFO : Starting import from ResponseCurve-ANXA2-GLGTDEDSLIEIICSR_2020-01-28_09-49-31.sky.zip

11 May 2020 16:35:09,790 INFO : Starting to import Skyline document from ResponseCurve-ANXA2-GLGTDEDSLIEIICSR_2020-01-28_09-49-31.sky.zip

11 May 2020 16:35:09,805 INFO : Expanding ResponseCurve-ANXA2-GLGTDEDSLIEIICSR.skyd

11 May 2020 16:35:10,151 INFO : Expanding ResponseCurve-ANXA2-GLGTDEDSLIEIICSR.sky.view

11 May 2020 16:35:10,152 INFO : Expanding ResponseCurve-ANXA2-GLGTDEDSLIEIICSR.sky

11 May 2020 16:35:10,159 WARN : The version of this Skyline document is 19.11. This is newer than the highest supported version 4.1

11 May 2020 16:35:10,163 INFO : 26% Done

11 May 2020 16:35:10,395 INFO : Inserting ANXA2

11 May 2020 16:35:10,406 INFO : 98% Done

11 May 2020 16:35:10,712 DEBUG: Total peptides inserted: 1

11 May 2020 16:35:10,713 INFO : Done parsing Skyline document.

11 May 2020 16:35:10,715 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:35:10,742 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:35:10,776 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:35:10,784 INFO : Cleaning up temp tables

11 May 2020 16:35:10,795 INFO : Completed import of Skyline document from ResponseCurve-ANXA2-GLGTDEDSLIEIICSR_2020-01-28_09-49-31.sky.zip

11 May 2020 16:35:10,796 INFO : 100% Done

11 May 2020 16:35:10,807 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80047/ResponseCurve-ANXA2-GLGTDEDSLIEIICSR_2020-01-28_09-49-31.sky.zip into the system

11 May 2020 16:35:10,808 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80044/ResponseCurve-TFF3-VDCGYPHVTPK_2020-01-28_09-48-41/ResponseCurve-TFF3-VDCGYPHVTPK.skyd into the system

11 May 2020 16:35:10,809 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80044/ResponseCurve-TFF3-VDCGYPHVTPK_2020-01-28_09-48-41/ResponseCurve-TFF3-VDCGYPHVTPK.skyd into the system

11 May 2020 16:35:10,809 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80044/ResponseCurve-TFF3-VDCGYPHVTPK_2020-01-28_09-48-41.sky.zip into the system

11 May 2020 16:35:10,813 INFO : Starting import from ResponseCurve-TFF3-VDCGYPHVTPK_2020-01-28_09-48-41.sky.zip

11 May 2020 16:35:10,819 INFO : Starting to import Skyline document from ResponseCurve-TFF3-VDCGYPHVTPK_2020-01-28_09-48-41.sky.zip

11 May 2020 16:35:10,835 INFO : Expanding ResponseCurve-TFF3-VDCGYPHVTPK.skyd

11 May 2020 16:35:11,240 INFO : Expanding ResponseCurve-TFF3-VDCGYPHVTPK.sky.view

11 May 2020 16:35:11,241 INFO : Expanding ResponseCurve-TFF3-VDCGYPHVTPK.sky

11 May 2020 16:35:11,247 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1

11 May 2020 16:35:11,251 INFO : 27% Done

11 May 2020 16:35:11,452 INFO : Inserting TFF3

11 May 2020 16:35:11,462 INFO : 98% Done

11 May 2020 16:35:11,752 DEBUG: Total peptides inserted: 1

11 May 2020 16:35:11,752 INFO : Done parsing Skyline document.

11 May 2020 16:35:11,755 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:35:11,778 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:35:11,798 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:35:11,806 INFO : Cleaning up temp tables

11 May 2020 16:35:11,816 INFO : Completed import of Skyline document from ResponseCurve-TFF3-VDCGYPHVTPK_2020-01-28_09-48-41.sky.zip

11 May 2020 16:35:11,817 INFO : 100% Done

11 May 2020 16:35:11,827 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80044/ResponseCurve-TFF3-VDCGYPHVTPK_2020-01-28_09-48-41.sky.zip into the system

11 May 2020 16:35:11,828 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80041/ResponseCurve-SMAD4-YCQYAFDLK_2020-01-28_09-47-57/ResponseCurve-SMAD4-YCQYAFDLK.skyd into the system

11 May 2020 16:35:11,829 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80041/ResponseCurve-SMAD4-YCQYAFDLK_2020-01-28_09-47-57/ResponseCurve-SMAD4-YCQYAFDLK.skyd into the system

11 May 2020 16:35:11,829 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80041/ResponseCurve-SMAD4-YCQYAFDLK_2020-01-28_09-47-57.sky.zip into the system

11 May 2020 16:35:11,832 INFO : Starting import from ResponseCurve-SMAD4-YCQYAFDLK_2020-01-28_09-47-57.sky.zip

11 May 2020 16:35:11,839 INFO : Starting to import Skyline document from ResponseCurve-SMAD4-YCQYAFDLK_2020-01-28_09-47-57.sky.zip

11 May 2020 16:35:11,854 INFO : Expanding ResponseCurve-SMAD4-YCQYAFDLK.skyd

11 May 2020 16:35:12,245 INFO : Expanding ResponseCurve-SMAD4-YCQYAFDLK.sky.view

11 May 2020 16:35:12,246 INFO : Expanding ResponseCurve-SMAD4-YCQYAFDLK.sky

11 May 2020 16:35:12,253 WARN : The version of this Skyline document is 4.13. This is newer than the highest supported version 4.1

11 May 2020 16:35:12,257 INFO : 27% Done

11 May 2020 16:35:12,469 INFO : Inserting SMAD4

11 May 2020 16:35:12,479 INFO : 98% Done

11 May 2020 16:35:12,835 DEBUG: Total peptides inserted: 1

11 May 2020 16:35:12,835 INFO : Done parsing Skyline document.

11 May 2020 16:35:12,837 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:35:12,861 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:35:12,881 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:35:12,888 INFO : Cleaning up temp tables

11 May 2020 16:35:13,373 INFO : Completed import of Skyline document from ResponseCurve-SMAD4-YCQYAFDLK_2020-01-28_09-47-57.sky.zip

11 May 2020 16:35:13,374 INFO : 100% Done

11 May 2020 16:35:13,386 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80041/ResponseCurve-SMAD4-YCQYAFDLK_2020-01-28_09-47-57.sky.zip into the system

11 May 2020 16:35:13,386 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80035/ResponseCurve-ERG_pan-VIVPADPTLWSTDHVR_2020-01-28_09-46-32/ResponseCurve-ERG_pan-VIVPADPTLWSTDHVR.skyd into the system

11 May 2020 16:35:13,387 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80035/ResponseCurve-ERG_pan-VIVPADPTLWSTDHVR_2020-01-28_09-46-32/ResponseCurve-ERG_pan-VIVPADPTLWSTDHVR.skyd into the system

11 May 2020 16:35:13,387 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80035/ResponseCurve-ERG_pan-VIVPADPTLWSTDHVR_2020-01-28_09-46-32.sky.zip into the system

11 May 2020 16:35:13,391 INFO : Starting import from ResponseCurve-ERG_pan-VIVPADPTLWSTDHVR_2020-01-28_09-46-32.sky.zip

11 May 2020 16:35:13,398 INFO : Starting to import Skyline document from ResponseCurve-ERG_pan-VIVPADPTLWSTDHVR_2020-01-28_09-46-32.sky.zip

11 May 2020 16:35:13,411 INFO : Expanding ResponseCurve-ERG_pan-VIVPADPTLWSTDHVR.skyd

11 May 2020 16:35:13,836 INFO : Expanding ResponseCurve-ERG_pan-VIVPADPTLWSTDHVR.sky.view

11 May 2020 16:35:13,837 INFO : Expanding ResponseCurve-ERG_pan-VIVPADPTLWSTDHVR.sky

11 May 2020 16:35:13,844 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1

11 May 2020 16:35:13,848 INFO : 21% Done

11 May 2020 16:35:14,096 INFO : 27% Done

11 May 2020 16:35:14,096 INFO : Inserting ERG_pan

11 May 2020 16:35:14,107 INFO : 98% Done

11 May 2020 16:35:14,481 DEBUG: Total peptides inserted: 1

11 May 2020 16:35:14,481 INFO : Done parsing Skyline document.

11 May 2020 16:35:14,484 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:35:14,508 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:35:14,527 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:35:14,534 INFO : Cleaning up temp tables

11 May 2020 16:35:15,035 INFO : Completed import of Skyline document from ResponseCurve-ERG_pan-VIVPADPTLWSTDHVR_2020-01-28_09-46-32.sky.zip

11 May 2020 16:35:15,036 INFO : 100% Done

11 May 2020 16:35:15,048 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80035/ResponseCurve-ERG_pan-VIVPADPTLWSTDHVR_2020-01-28_09-46-32.sky.zip into the system

11 May 2020 16:35:15,049 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80032/ResponseCurve-CAMKK2-SLSAPGNLLTK_2020-01-28_09-45-49/ResponseCurve-CAMKK2-SLSAPGNLLTK.skyd into the system

11 May 2020 16:35:15,050 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80032/ResponseCurve-CAMKK2-SLSAPGNLLTK_2020-01-28_09-45-49/ResponseCurve-CAMKK2-SLSAPGNLLTK.skyd into the system

11 May 2020 16:35:15,050 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80032/ResponseCurve-CAMKK2-SLSAPGNLLTK_2020-01-28_09-45-49.sky.zip into the system

11 May 2020 16:35:15,053 INFO : Starting import from ResponseCurve-CAMKK2-SLSAPGNLLTK_2020-01-28_09-45-49.sky.zip

11 May 2020 16:35:15,061 INFO : Starting to import Skyline document from ResponseCurve-CAMKK2-SLSAPGNLLTK_2020-01-28_09-45-49.sky.zip

11 May 2020 16:35:15,075 INFO : Expanding ResponseCurve-CAMKK2-SLSAPGNLLTK.skyd

11 May 2020 16:35:15,419 INFO : Expanding ResponseCurve-CAMKK2-SLSAPGNLLTK.sky.view

11 May 2020 16:35:15,420 INFO : Expanding ResponseCurve-CAMKK2-SLSAPGNLLTK.sky

11 May 2020 16:35:15,427 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1

11 May 2020 16:35:15,431 INFO : 26% Done

11 May 2020 16:35:15,645 INFO : Inserting CAMKK2

11 May 2020 16:35:15,655 INFO : 98% Done

11 May 2020 16:35:15,980 DEBUG: Total peptides inserted: 1

11 May 2020 16:35:15,980 INFO : Done parsing Skyline document.

11 May 2020 16:35:15,982 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:35:16,005 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:35:16,023 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:35:16,030 INFO : Cleaning up temp tables

11 May 2020 16:35:16,507 INFO : Completed import of Skyline document from ResponseCurve-CAMKK2-SLSAPGNLLTK_2020-01-28_09-45-49.sky.zip

11 May 2020 16:35:16,508 INFO : 100% Done

11 May 2020 16:35:16,520 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80032/ResponseCurve-CAMKK2-SLSAPGNLLTK_2020-01-28_09-45-49.sky.zip into the system

11 May 2020 16:35:16,520 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80046/ResponseCurve-VEGFA-FMDVYQR_2020-01-28_09-49-13/ResponseCurve-VEGFA-FMDVYQR.skyd into the system

11 May 2020 16:35:16,523 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80046/ResponseCurve-VEGFA-FMDVYQR_2020-01-28_09-49-13/ResponseCurve-VEGFA-FMDVYQR.skyd into the system

11 May 2020 16:35:16,523 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80046/ResponseCurve-VEGFA-FMDVYQR_2020-01-28_09-49-13.sky.zip into the system

11 May 2020 16:35:16,527 INFO : Starting import from ResponseCurve-VEGFA-FMDVYQR_2020-01-28_09-49-13.sky.zip

11 May 2020 16:35:16,534 INFO : Starting to import Skyline document from ResponseCurve-VEGFA-FMDVYQR_2020-01-28_09-49-13.sky.zip

11 May 2020 16:35:16,545 INFO : Expanding ResponseCurve-VEGFA-FMDVYQR.skyd

11 May 2020 16:35:16,825 INFO : Expanding ResponseCurve-VEGFA-FMDVYQR.sky.view

11 May 2020 16:35:16,826 INFO : Expanding ResponseCurve-VEGFA-FMDVYQR.sky

11 May 2020 16:35:16,832 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1

11 May 2020 16:35:16,836 INFO : 29% Done

11 May 2020 16:35:17,064 INFO : Inserting VEGFA

11 May 2020 16:35:17,073 INFO : 98% Done

11 May 2020 16:35:17,309 DEBUG: Total peptides inserted: 1

11 May 2020 16:35:17,309 INFO : Done parsing Skyline document.

11 May 2020 16:35:17,312 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:35:17,334 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:35:17,349 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:35:17,355 INFO : Cleaning up temp tables

11 May 2020 16:35:17,363 INFO : Completed import of Skyline document from ResponseCurve-VEGFA-FMDVYQR_2020-01-28_09-49-13.sky.zip

11 May 2020 16:35:17,364 INFO : 100% Done

11 May 2020 16:35:17,377 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80046/ResponseCurve-VEGFA-FMDVYQR_2020-01-28_09-49-13.sky.zip into the system

11 May 2020 16:35:17,377 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80045/ResponseCurve-TGFB1-GGEIEGFR_2020-01-28_09-48-56/ResponseCurve-TGFB1-GGEIEGFR.skyd into the system

11 May 2020 16:35:17,378 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80045/ResponseCurve-TGFB1-GGEIEGFR_2020-01-28_09-48-56/ResponseCurve-TGFB1-GGEIEGFR.skyd into the system

11 May 2020 16:35:17,379 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80045/ResponseCurve-TGFB1-GGEIEGFR_2020-01-28_09-48-56.sky.zip into the system

11 May 2020 16:35:17,383 INFO : Starting import from ResponseCurve-TGFB1-GGEIEGFR_2020-01-28_09-48-56.sky.zip

11 May 2020 16:35:17,390 INFO : Starting to import Skyline document from ResponseCurve-TGFB1-GGEIEGFR_2020-01-28_09-48-56.sky.zip

11 May 2020 16:35:17,403 INFO : Expanding ResponseCurve-TGFB1-GGEIEGFR.skyd

11 May 2020 16:35:17,737 INFO : Expanding ResponseCurve-TGFB1-GGEIEGFR.sky.view

11 May 2020 16:35:17,738 INFO : Expanding ResponseCurve-TGFB1-GGEIEGFR.sky

11 May 2020 16:35:17,744 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1

11 May 2020 16:35:17,748 INFO : 26% Done

11 May 2020 16:35:17,920 INFO : Inserting TGFB1

11 May 2020 16:35:17,929 INFO : 98% Done

11 May 2020 16:35:18,174 DEBUG: Total peptides inserted: 1

11 May 2020 16:35:18,174 INFO : Done parsing Skyline document.

11 May 2020 16:35:18,176 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:35:18,199 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:35:18,216 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:35:18,222 INFO : Cleaning up temp tables

11 May 2020 16:35:18,231 INFO : Completed import of Skyline document from ResponseCurve-TGFB1-GGEIEGFR_2020-01-28_09-48-56.sky.zip

11 May 2020 16:35:18,232 INFO : 100% Done

11 May 2020 16:35:18,243 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80045/ResponseCurve-TGFB1-GGEIEGFR_2020-01-28_09-48-56.sky.zip into the system

11 May 2020 16:35:18,243 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80043/ResponseCurve-SPRC-LEAGDHPVELLAR_2020-01-28_09-48-25/ResponseCurve-SPRC-LEAGDHPVELLAR.skyd into the system

11 May 2020 16:35:18,244 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80043/ResponseCurve-SPRC-LEAGDHPVELLAR_2020-01-28_09-48-25/ResponseCurve-SPRC-LEAGDHPVELLAR.skyd into the system

11 May 2020 16:35:18,244 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80043/ResponseCurve-SPRC-LEAGDHPVELLAR_2020-01-28_09-48-25.sky.zip into the system

11 May 2020 16:35:18,248 INFO : Starting import from ResponseCurve-SPRC-LEAGDHPVELLAR_2020-01-28_09-48-25.sky.zip

11 May 2020 16:35:18,254 INFO : Starting to import Skyline document from ResponseCurve-SPRC-LEAGDHPVELLAR_2020-01-28_09-48-25.sky.zip

11 May 2020 16:35:18,269 INFO : Expanding ResponseCurve-SPRC-LEAGDHPVELLAR.skyd

11 May 2020 16:35:18,649 INFO : Expanding ResponseCurve-SPRC-LEAGDHPVELLAR.sky.view

11 May 2020 16:35:18,650 INFO : Expanding ResponseCurve-SPRC-LEAGDHPVELLAR.sky

11 May 2020 16:35:18,656 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1

11 May 2020 16:35:18,660 INFO : 26% Done

11 May 2020 16:35:18,893 INFO : Inserting SPRC

11 May 2020 16:35:18,903 INFO : 98% Done

11 May 2020 16:35:19,193 DEBUG: Total peptides inserted: 1

11 May 2020 16:35:19,194 INFO : Done parsing Skyline document.

11 May 2020 16:35:19,196 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:35:19,220 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:35:19,238 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:35:19,245 INFO : Cleaning up temp tables

11 May 2020 16:35:19,248 INFO : Completed import of Skyline document from ResponseCurve-SPRC-LEAGDHPVELLAR_2020-01-28_09-48-25.sky.zip

11 May 2020 16:35:19,255 INFO : 100% Done

11 May 2020 16:35:19,267 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80043/ResponseCurve-SPRC-LEAGDHPVELLAR_2020-01-28_09-48-25.sky.zip into the system

11 May 2020 16:35:19,267 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80039/ResponseCurve-NCOA2-LLQDSSSPVDLAK_2020-01-28_09-47-28/ResponseCurve-NCOA2-LLQDSSSPVDLAK.skyd into the system

11 May 2020 16:35:19,268 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80039/ResponseCurve-NCOA2-LLQDSSSPVDLAK_2020-01-28_09-47-28/ResponseCurve-NCOA2-LLQDSSSPVDLAK.skyd into the system

11 May 2020 16:35:19,268 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80039/ResponseCurve-NCOA2-LLQDSSSPVDLAK_2020-01-28_09-47-28.sky.zip into the system

11 May 2020 16:35:19,272 INFO : Starting import from ResponseCurve-NCOA2-LLQDSSSPVDLAK_2020-01-28_09-47-28.sky.zip

11 May 2020 16:35:19,279 INFO : Starting to import Skyline document from ResponseCurve-NCOA2-LLQDSSSPVDLAK_2020-01-28_09-47-28.sky.zip

11 May 2020 16:35:19,293 INFO : Expanding ResponseCurve-NCOA2-LLQDSSSPVDLAK.skyd

11 May 2020 16:35:19,695 INFO : Expanding ResponseCurve-NCOA2-LLQDSSSPVDLAK.sky.view

11 May 2020 16:35:19,696 INFO : Expanding ResponseCurve-NCOA2-LLQDSSSPVDLAK.sky

11 May 2020 16:35:19,703 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1

11 May 2020 16:35:19,707 INFO : 26% Done

11 May 2020 16:35:20,007 INFO : Inserting NCOA2

11 May 2020 16:35:20,017 INFO : 98% Done

11 May 2020 16:35:20,299 DEBUG: Total peptides inserted: 1

11 May 2020 16:35:20,299 INFO : Done parsing Skyline document.

11 May 2020 16:35:20,301 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:35:20,325 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:35:20,344 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:35:20,350 INFO : Cleaning up temp tables

11 May 2020 16:35:20,844 INFO : Completed import of Skyline document from ResponseCurve-NCOA2-LLQDSSSPVDLAK_2020-01-28_09-47-28.sky.zip

11 May 2020 16:35:20,845 INFO : 100% Done

11 May 2020 16:35:20,856 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80039/ResponseCurve-NCOA2-LLQDSSSPVDLAK_2020-01-28_09-47-28.sky.zip into the system

11 May 2020 16:35:20,857 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80037/ResponseCurve-MMP9-LGLGADVAQVTGALR_2020-01-28_09-47-01/ResponseCurve-MMP9-LGLGADVAQVTGALR.skyd into the system

11 May 2020 16:35:20,858 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80037/ResponseCurve-MMP9-LGLGADVAQVTGALR_2020-01-28_09-47-01/ResponseCurve-MMP9-LGLGADVAQVTGALR.skyd into the system

11 May 2020 16:35:20,858 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80037/ResponseCurve-MMP9-LGLGADVAQVTGALR_2020-01-28_09-47-01.sky.zip into the system

11 May 2020 16:35:20,862 INFO : Starting import from ResponseCurve-MMP9-LGLGADVAQVTGALR_2020-01-28_09-47-01.sky.zip

11 May 2020 16:35:20,868 INFO : Starting to import Skyline document from ResponseCurve-MMP9-LGLGADVAQVTGALR_2020-01-28_09-47-01.sky.zip

11 May 2020 16:35:20,882 INFO : Expanding ResponseCurve-MMP9-LGLGADVAQVTGALR.skyd

11 May 2020 16:35:21,306 INFO : Expanding ResponseCurve-MMP9-LGLGADVAQVTGALR.sky.view

11 May 2020 16:35:21,307 INFO : Expanding ResponseCurve-MMP9-LGLGADVAQVTGALR.sky

11 May 2020 16:35:21,314 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1

11 May 2020 16:35:21,318 INFO : 21% Done

11 May 2020 16:35:21,612 INFO : 27% Done

11 May 2020 16:35:21,612 INFO : Inserting MMP9

11 May 2020 16:35:21,623 INFO : 98% Done

11 May 2020 16:35:21,988 DEBUG: Total peptides inserted: 1

11 May 2020 16:35:21,988 INFO : Done parsing Skyline document.

11 May 2020 16:35:21,990 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:35:22,014 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:35:22,033 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:35:22,040 INFO : Cleaning up temp tables

11 May 2020 16:35:22,049 INFO : Completed import of Skyline document from ResponseCurve-MMP9-LGLGADVAQVTGALR_2020-01-28_09-47-01.sky.zip

11 May 2020 16:35:22,050 INFO : 100% Done

11 May 2020 16:35:22,060 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80037/ResponseCurve-MMP9-LGLGADVAQVTGALR_2020-01-28_09-47-01.sky.zip into the system

11 May 2020 16:35:22,061 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80042/ResponseCurve-SPINK1-QTSILIQK_2020-01-28_09-48-12/ResponseCurve-SPINK1-QTSILIQK.skyd into the system

11 May 2020 16:35:22,062 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80042/ResponseCurve-SPINK1-QTSILIQK_2020-01-28_09-48-12/ResponseCurve-SPINK1-QTSILIQK.skyd into the system

11 May 2020 16:35:22,062 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80042/ResponseCurve-SPINK1-QTSILIQK_2020-01-28_09-48-12.sky.zip into the system

11 May 2020 16:35:22,065 INFO : Starting import from ResponseCurve-SPINK1-QTSILIQK_2020-01-28_09-48-12.sky.zip

11 May 2020 16:35:22,072 INFO : Starting to import Skyline document from ResponseCurve-SPINK1-QTSILIQK_2020-01-28_09-48-12.sky.zip

11 May 2020 16:35:22,083 INFO : Expanding ResponseCurve-SPINK1-QTSILIQK.skyd

11 May 2020 16:35:22,368 INFO : Expanding ResponseCurve-SPINK1-QTSILIQK.sky.view

11 May 2020 16:35:22,369 INFO : Expanding ResponseCurve-SPINK1-QTSILIQK.sky

11 May 2020 16:35:22,376 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1

11 May 2020 16:35:22,379 INFO : 21% Done

11 May 2020 16:35:22,555 INFO : Inserting SPINK1

11 May 2020 16:35:22,565 INFO : 98% Done

11 May 2020 16:35:22,839 DEBUG: Total peptides inserted: 1

11 May 2020 16:35:22,839 INFO : Done parsing Skyline document.

11 May 2020 16:35:22,841 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:35:22,865 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:35:22,879 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:35:22,884 INFO : Cleaning up temp tables

11 May 2020 16:35:22,893 INFO : Completed import of Skyline document from ResponseCurve-SPINK1-QTSILIQK_2020-01-28_09-48-12.sky.zip

11 May 2020 16:35:22,894 INFO : 100% Done

11 May 2020 16:35:22,904 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80042/ResponseCurve-SPINK1-QTSILIQK_2020-01-28_09-48-12.sky.zip into the system

11 May 2020 16:35:22,905 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80040/ResponseCurve-PSA-LSEPAETDAVK_2020-01-28_09-47-42/ResponseCurve-PSA-LSEPAETDAVK.skyd into the system

11 May 2020 16:35:22,906 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80040/ResponseCurve-PSA-LSEPAETDAVK_2020-01-28_09-47-42/ResponseCurve-PSA-LSEPAETDAVK.skyd into the system

11 May 2020 16:35:22,906 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80040/ResponseCurve-PSA-LSEPAETDAVK_2020-01-28_09-47-42.sky.zip into the system

11 May 2020 16:35:22,909 INFO : Starting import from ResponseCurve-PSA-LSEPAETDAVK_2020-01-28_09-47-42.sky.zip

11 May 2020 16:35:22,916 INFO : Starting to import Skyline document from ResponseCurve-PSA-LSEPAETDAVK_2020-01-28_09-47-42.sky.zip

11 May 2020 16:35:22,930 INFO : Expanding ResponseCurve-PSA-LSEPAETDAVK.skyd

11 May 2020 16:35:23,355 INFO : Expanding ResponseCurve-PSA-LSEPAETDAVK.sky.view

11 May 2020 16:35:23,355 INFO : Expanding ResponseCurve-PSA-LSEPAETDAVK.sky

11 May 2020 16:35:23,362 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1

11 May 2020 16:35:23,366 INFO : 22% Done

11 May 2020 16:35:23,581 INFO : Inserting PSA

11 May 2020 16:35:23,591 INFO : 98% Done

11 May 2020 16:35:23,926 DEBUG: Total peptides inserted: 1

11 May 2020 16:35:23,927 INFO : Done parsing Skyline document.

11 May 2020 16:35:23,929 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:35:23,951 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:35:23,969 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:35:23,975 INFO : Cleaning up temp tables

11 May 2020 16:35:24,439 INFO : Completed import of Skyline document from ResponseCurve-PSA-LSEPAETDAVK_2020-01-28_09-47-42.sky.zip

11 May 2020 16:35:24,440 INFO : 100% Done

11 May 2020 16:35:24,450 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80040/ResponseCurve-PSA-LSEPAETDAVK_2020-01-28_09-47-42.sky.zip into the system

11 May 2020 16:35:24,451 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80038/ResponseCurve-MUC1-DISEMFLQIYK_2020-01-28_09-47-16/ResponseCurve-MUC1-DISEMFLQIYK.skyd into the system

11 May 2020 16:35:24,452 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80038/ResponseCurve-MUC1-DISEMFLQIYK_2020-01-28_09-47-16/ResponseCurve-MUC1-DISEMFLQIYK.skyd into the system

11 May 2020 16:35:24,452 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80038/ResponseCurve-MUC1-DISEMFLQIYK_2020-01-28_09-47-16.sky.zip into the system

11 May 2020 16:35:24,455 INFO : Starting import from ResponseCurve-MUC1-DISEMFLQIYK_2020-01-28_09-47-16.sky.zip

11 May 2020 16:35:24,461 INFO : Starting to import Skyline document from ResponseCurve-MUC1-DISEMFLQIYK_2020-01-28_09-47-16.sky.zip

11 May 2020 16:35:24,471 INFO : Expanding ResponseCurve-MUC1-DISEMFLQIYK.skyd

11 May 2020 16:35:24,763 INFO : Expanding ResponseCurve-MUC1-DISEMFLQIYK.sky.view

11 May 2020 16:35:24,764 INFO : Expanding ResponseCurve-MUC1-DISEMFLQIYK.sky

11 May 2020 16:35:24,770 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1

11 May 2020 16:35:24,773 INFO : 29% Done

11 May 2020 16:35:24,911 INFO : Inserting MUC1

11 May 2020 16:35:24,920 INFO : 98% Done

11 May 2020 16:35:25,133 DEBUG: Total peptides inserted: 1

11 May 2020 16:35:25,133 INFO : Done parsing Skyline document.

11 May 2020 16:35:25,135 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:35:25,158 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:35:25,171 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:35:25,176 INFO : Cleaning up temp tables

11 May 2020 16:35:25,646 INFO : Completed import of Skyline document from ResponseCurve-MUC1-DISEMFLQIYK_2020-01-28_09-47-16.sky.zip

11 May 2020 16:35:25,648 INFO : 100% Done

11 May 2020 16:35:25,660 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80038/ResponseCurve-MUC1-DISEMFLQIYK_2020-01-28_09-47-16.sky.zip into the system

11 May 2020 16:35:25,660 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80036/ResponseCurve-FOLH1-TYSVSFDSLFSAVK_2020-01-28_09-46-45/ResponseCurve-FOLH1-TYSVSFDSLFSAVK.skyd into the system

11 May 2020 16:35:25,661 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80036/ResponseCurve-FOLH1-TYSVSFDSLFSAVK_2020-01-28_09-46-45/ResponseCurve-FOLH1-TYSVSFDSLFSAVK.skyd into the system

11 May 2020 16:35:25,662 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80036/ResponseCurve-FOLH1-TYSVSFDSLFSAVK_2020-01-28_09-46-45.sky.zip into the system

11 May 2020 16:35:25,665 INFO : Starting import from ResponseCurve-FOLH1-TYSVSFDSLFSAVK_2020-01-28_09-46-45.sky.zip

11 May 2020 16:35:25,672 INFO : Starting to import Skyline document from ResponseCurve-FOLH1-TYSVSFDSLFSAVK_2020-01-28_09-46-45.sky.zip

11 May 2020 16:35:25,688 INFO : Expanding ResponseCurve-FOLH1-TYSVSFDSLFSAVK.skyd

11 May 2020 16:35:26,114 INFO : Expanding ResponseCurve-FOLH1-TYSVSFDSLFSAVK.sky.view

11 May 2020 16:35:26,115 INFO : Expanding ResponseCurve-FOLH1-TYSVSFDSLFSAVK.sky

11 May 2020 16:35:26,122 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1

11 May 2020 16:35:26,126 INFO : 23% Done

11 May 2020 16:35:26,313 INFO : Inserting FOLH1

11 May 2020 16:35:26,323 INFO : 98% Done

11 May 2020 16:35:26,646 DEBUG: Total peptides inserted: 1

11 May 2020 16:35:26,647 INFO : Done parsing Skyline document.

11 May 2020 16:35:26,649 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:35:26,673 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:35:26,689 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:35:26,696 INFO : Cleaning up temp tables

11 May 2020 16:35:27,177 INFO : Completed import of Skyline document from ResponseCurve-FOLH1-TYSVSFDSLFSAVK_2020-01-28_09-46-45.sky.zip

11 May 2020 16:35:27,179 INFO : 100% Done

11 May 2020 16:35:27,192 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80036/ResponseCurve-FOLH1-TYSVSFDSLFSAVK_2020-01-28_09-46-45.sky.zip into the system

11 May 2020 16:35:27,192 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80033/ResponseCurve-CCND1-AYPDANLLNDR_2020-01-28_09-46-04/ResponseCurve-CCND1-AYPDANLLNDR.skyd into the system

11 May 2020 16:35:27,194 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80033/ResponseCurve-CCND1-AYPDANLLNDR_2020-01-28_09-46-04/ResponseCurve-CCND1-AYPDANLLNDR.skyd into the system

11 May 2020 16:35:27,194 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80033/ResponseCurve-CCND1-AYPDANLLNDR_2020-01-28_09-46-04.sky.zip into the system

11 May 2020 16:35:27,199 INFO : Starting import from ResponseCurve-CCND1-AYPDANLLNDR_2020-01-28_09-46-04.sky.zip

11 May 2020 16:35:27,206 INFO : Starting to import Skyline document from ResponseCurve-CCND1-AYPDANLLNDR_2020-01-28_09-46-04.sky.zip

11 May 2020 16:35:27,224 INFO : Expanding ResponseCurve-CCND1-AYPDANLLNDR.skyd

11 May 2020 16:35:27,615 INFO : Expanding ResponseCurve-CCND1-AYPDANLLNDR.sky.view

11 May 2020 16:35:27,616 INFO : Expanding ResponseCurve-CCND1-AYPDANLLNDR.sky

11 May 2020 16:35:27,622 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1

11 May 2020 16:35:27,626 INFO : 22% Done

11 May 2020 16:35:27,929 INFO : Inserting CCND1

11 May 2020 16:35:27,940 INFO : 98% Done

11 May 2020 16:35:28,311 DEBUG: Total peptides inserted: 1

11 May 2020 16:35:28,311 INFO : Done parsing Skyline document.

11 May 2020 16:35:28,313 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:35:28,338 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:35:28,357 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:35:28,365 INFO : Cleaning up temp tables

11 May 2020 16:35:28,374 INFO : Completed import of Skyline document from ResponseCurve-CCND1-AYPDANLLNDR_2020-01-28_09-46-04.sky.zip

11 May 2020 16:35:28,375 INFO : 100% Done

11 May 2020 16:35:28,386 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80033/ResponseCurve-CCND1-AYPDANLLNDR_2020-01-28_09-46-04.sky.zip into the system

11 May 2020 16:35:28,386 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80034/ResponseCurve-EGFR-LTQLGTFEDHFLSLQR_2020-01-28_09-46-19/ResponseCurve-EGFR-LTQLGTFEDHFLSLQR.skyd into the system

11 May 2020 16:35:28,388 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80034/ResponseCurve-EGFR-LTQLGTFEDHFLSLQR_2020-01-28_09-46-19/ResponseCurve-EGFR-LTQLGTFEDHFLSLQR.skyd into the system

11 May 2020 16:35:28,388 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80034/ResponseCurve-EGFR-LTQLGTFEDHFLSLQR_2020-01-28_09-46-19.sky.zip into the system

11 May 2020 16:35:28,391 INFO : Starting import from ResponseCurve-EGFR-LTQLGTFEDHFLSLQR_2020-01-28_09-46-19.sky.zip

11 May 2020 16:35:28,397 INFO : Starting to import Skyline document from ResponseCurve-EGFR-LTQLGTFEDHFLSLQR_2020-01-28_09-46-19.sky.zip

11 May 2020 16:35:28,410 INFO : Expanding ResponseCurve-EGFR-LTQLGTFEDHFLSLQR.skyd

11 May 2020 16:35:28,771 INFO : Expanding ResponseCurve-EGFR-LTQLGTFEDHFLSLQR.sky.view

11 May 2020 16:35:28,772 INFO : Expanding ResponseCurve-EGFR-LTQLGTFEDHFLSLQR.sky

11 May 2020 16:35:28,779 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1

11 May 2020 16:35:28,782 INFO : 28% Done

11 May 2020 16:35:28,955 INFO : Inserting EGFR

11 May 2020 16:35:28,965 INFO : 98% Done

11 May 2020 16:35:29,200 DEBUG: Total peptides inserted: 1

11 May 2020 16:35:29,201 INFO : Done parsing Skyline document.

11 May 2020 16:35:29,203 INFO : Creating and populating temp tables for Proportion values

11 May 2020 16:35:29,226 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

11 May 2020 16:35:29,241 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

11 May 2020 16:35:29,247 INFO : Cleaning up temp tables

11 May 2020 16:35:29,250 INFO : Completed import of Skyline document from ResponseCurve-EGFR-LTQLGTFEDHFLSLQR_2020-01-28_09-46-19.sky.zip

11 May 2020 16:35:29,257 INFO : 100% Done

11 May 2020 16:35:29,268 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80034/ResponseCurve-EGFR-LTQLGTFEDHFLSLQR_2020-01-28_09-46-19.sky.zip into the system

11 May 2020 16:35:29,433 INFO : Done importing xar

11 May 2020 16:35:29,438 INFO : Loading pages and webpart properties

11 May 2020 16:35:29,668 INFO : Done importing pages and webpart properties

11 May 2020 16:35:29,668 INFO : Done importing folder archive for Response_Curve_16_proteins

11 May 2020 16:35:29,668 INFO : Done importing subfolders and container tabs

11 May 2020 16:35:29,669 INFO :

11 May 2020 16:35:29,669 INFO : Experiment import completed successfully.

11 May 2020 16:35:29,669 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'

11 May 2020 16:35:32,924 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'

11 May 2020 16:35:32,924 INFO :

11 May 2020 16:35:32,925 INFO : Finishing up experiment copy.

11 May 2020 16:35:32,952 INFO : Adding runs imported in subfolders.

11 May 2020 16:35:34,987 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.

11 May 2020 16:35:35,084 INFO : Updating access URL to point to the new copy of the data.

11 May 2020 16:35:35,124 INFO : Setting the 'copied' timestamp on the JournalExperiment table.

11 May 2020 16:35:35,127 INFO : Removing copy permissions given to journal.

11 May 2020 16:35:35,214 INFO : Adding read permissions to all users that are folder admins in the source container.

11 May 2020 16:35:35,231 INFO : Setting the TargetedMS folder type to 'Experimental Data'

11 May 2020 16:35:35,285 INFO : Updating the 'Raw Data' tab configuration

11 May 2020 16:35:35,328 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-159_seg1_2020-01-28_09-56-01.sky.zip; targetedms run ID 86801

11 May 2020 16:35:35,329 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,329 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80068/CPDR-FFPE-ID-159_seg1_2020-01-28_09-56-01.sky.zip

11 May 2020 16:35:35,329 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-159_seg1_2020-01-28_09-56-01.sky.zip

11 May 2020 16:35:35,338 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,338 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80068/CPDR-FFPE-ID-159_seg1_2020-01-28_09-56-01/CPDR-FFPE-ID-159_seg1.skyd

11 May 2020 16:35:35,338 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-159_seg1_2020-01-28_09-56-01/CPDR-FFPE-ID-159_seg1.skyd

11 May 2020 16:35:35,365 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-361_seg1_2020-01-28_09-57-09.sky.zip; targetedms run ID 86800

11 May 2020 16:35:35,365 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,366 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80071/CPDR-FFPE-ID-361_seg1_2020-01-28_09-57-09.sky.zip

11 May 2020 16:35:35,366 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-361_seg1_2020-01-28_09-57-09.sky.zip

11 May 2020 16:35:35,373 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,373 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80071/CPDR-FFPE-ID-361_seg1_2020-01-28_09-57-09/CPDR-FFPE-ID-361_seg1.skyd

11 May 2020 16:35:35,373 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-361_seg1_2020-01-28_09-57-09/CPDR-FFPE-ID-361_seg1.skyd

11 May 2020 16:35:35,384 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-167_seg1_2020-01-28_09-56-22.sky.zip; targetedms run ID 86799

11 May 2020 16:35:35,384 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,385 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80069/CPDR-FFPE-ID-167_seg1_2020-01-28_09-56-22.sky.zip

11 May 2020 16:35:35,385 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-167_seg1_2020-01-28_09-56-22.sky.zip

11 May 2020 16:35:35,392 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,392 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80069/CPDR-FFPE-ID-167_seg1_2020-01-28_09-56-22/CPDR-FFPE-ID-167_seg1.skyd

11 May 2020 16:35:35,392 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-167_seg1_2020-01-28_09-56-22/CPDR-FFPE-ID-167_seg1.skyd

11 May 2020 16:35:35,402 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-241_2020-01-28_10-28-06.sky.zip; targetedms run ID 86798

11 May 2020 16:35:35,403 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,403 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80129/CPDR-FFPE-ID-241_2020-01-28_10-28-06.sky.zip

11 May 2020 16:35:35,403 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-241_2020-01-28_10-28-06.sky.zip

11 May 2020 16:35:35,410 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,410 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80129/CPDR-FFPE-ID-241_2020-01-28_10-28-06/CPDR-FFPE-ID-241.skyd

11 May 2020 16:35:35,410 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-241_2020-01-28_10-28-06/CPDR-FFPE-ID-241.skyd

11 May 2020 16:35:35,420 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-292_2020-01-28_10-31-54.sky.zip; targetedms run ID 86797

11 May 2020 16:35:35,421 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,421 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80135/CPDR-FFPE-ID-292_2020-01-28_10-31-54/CPDR-FFPE-ID-292.skyd

11 May 2020 16:35:35,422 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-292_2020-01-28_10-31-54/CPDR-FFPE-ID-292.skyd

11 May 2020 16:35:35,427 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,428 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80135/CPDR-FFPE-ID-292_2020-01-28_10-31-54.sky.zip

11 May 2020 16:35:35,428 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-292_2020-01-28_10-31-54.sky.zip

11 May 2020 16:35:35,438 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-336_2020-01-28_10-32-24.sky.zip; targetedms run ID 86796

11 May 2020 16:35:35,439 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,439 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80136/CPDR-FFPE-ID-336_2020-01-28_10-32-24/CPDR-FFPE-ID-336.skyd

11 May 2020 16:35:35,439 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-336_2020-01-28_10-32-24/CPDR-FFPE-ID-336.skyd

11 May 2020 16:35:35,445 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,445 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80136/CPDR-FFPE-ID-336_2020-01-28_10-32-24.sky.zip

11 May 2020 16:35:35,445 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-336_2020-01-28_10-32-24.sky.zip

11 May 2020 16:35:35,453 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-299_2020-01-28_10-37-39.sky.zip; targetedms run ID 86795

11 May 2020 16:35:35,455 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,455 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80144/CPDR-FFPE-ID-299_2020-01-28_10-37-39/CPDR-FFPE-ID-299.skyd

11 May 2020 16:35:35,455 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-299_2020-01-28_10-37-39/CPDR-FFPE-ID-299.skyd

11 May 2020 16:35:35,460 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,460 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80144/CPDR-FFPE-ID-299_2020-01-28_10-37-39.sky.zip

11 May 2020 16:35:35,460 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-299_2020-01-28_10-37-39.sky.zip

11 May 2020 16:35:35,468 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-249_2020-01-28_10-41-10.sky.zip; targetedms run ID 86794

11 May 2020 16:35:35,469 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,470 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80150/CPDR-FFPE-ID-249_2020-01-28_10-41-10/CPDR-FFPE-ID-249.skyd

11 May 2020 16:35:35,470 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-249_2020-01-28_10-41-10/CPDR-FFPE-ID-249.skyd

11 May 2020 16:35:35,475 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,475 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80150/CPDR-FFPE-ID-249_2020-01-28_10-41-10.sky.zip

11 May 2020 16:35:35,475 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-249_2020-01-28_10-41-10.sky.zip

11 May 2020 16:35:35,483 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-254_2020-01-28_10-42-25.sky.zip; targetedms run ID 86793

11 May 2020 16:35:35,485 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,485 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80152/CPDR-FFPE-ID-254_2020-01-28_10-42-25/CPDR-FFPE-ID-254.skyd

11 May 2020 16:35:35,485 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-254_2020-01-28_10-42-25/CPDR-FFPE-ID-254.skyd

11 May 2020 16:35:35,490 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,490 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80152/CPDR-FFPE-ID-254_2020-01-28_10-42-25.sky.zip

11 May 2020 16:35:35,490 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-254_2020-01-28_10-42-25.sky.zip

11 May 2020 16:35:35,498 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-341_2020-01-28_10-53-36.sky.zip; targetedms run ID 86792

11 May 2020 16:35:35,499 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,500 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80169/CPDR-FFPE-ID-341_2020-01-28_10-53-36/CPDR-FFPE-ID-341.skyd

11 May 2020 16:35:35,500 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-341_2020-01-28_10-53-36/CPDR-FFPE-ID-341.skyd

11 May 2020 16:35:35,504 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,505 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80169/CPDR-FFPE-ID-341_2020-01-28_10-53-36.sky.zip

11 May 2020 16:35:35,505 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-341_2020-01-28_10-53-36.sky.zip

11 May 2020 16:35:35,513 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-324_2020-01-28_11-04-12.sky.zip; targetedms run ID 86791

11 May 2020 16:35:35,514 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,515 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80184/CPDR-FFPE-ID-324_2020-01-28_11-04-12/CPDR-FFPE-ID-324.skyd

11 May 2020 16:35:35,515 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-324_2020-01-28_11-04-12/CPDR-FFPE-ID-324.skyd

11 May 2020 16:35:35,519 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,519 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80184/CPDR-FFPE-ID-324_2020-01-28_11-04-12.sky.zip

11 May 2020 16:35:35,520 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-324_2020-01-28_11-04-12.sky.zip

11 May 2020 16:35:35,528 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-223_2020-01-28_10-23-35.sky.zip; targetedms run ID 86790

11 May 2020 16:35:35,529 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,529 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80117/CPDR-FFPE-ID-223_2020-01-28_10-23-35.sky.zip

11 May 2020 16:35:35,529 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-223_2020-01-28_10-23-35.sky.zip

11 May 2020 16:35:35,534 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,535 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80117/CPDR-FFPE-ID-223_2020-01-28_10-23-35/CPDR-FFPE-ID-223.skyd

11 May 2020 16:35:35,535 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-223_2020-01-28_10-23-35/CPDR-FFPE-ID-223.skyd

11 May 2020 16:35:35,543 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-209_2020-01-28_10-24-12.sky.zip; targetedms run ID 86789

11 May 2020 16:35:35,543 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,544 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80118/CPDR-FFPE-ID-209_2020-01-28_10-24-12.sky.zip

11 May 2020 16:35:35,544 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-209_2020-01-28_10-24-12.sky.zip

11 May 2020 16:35:35,549 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,549 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80118/CPDR-FFPE-ID-209_2020-01-28_10-24-12/CPDR-FFPE-ID-209.skyd

11 May 2020 16:35:35,550 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-209_2020-01-28_10-24-12/CPDR-FFPE-ID-209.skyd

11 May 2020 16:35:35,558 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-268_2020-01-28_10-26-00.sky.zip; targetedms run ID 86788

11 May 2020 16:35:35,558 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,559 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80126/CPDR-FFPE-ID-268_2020-01-28_10-26-00.sky.zip

11 May 2020 16:35:35,559 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-268_2020-01-28_10-26-00.sky.zip

11 May 2020 16:35:35,564 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,564 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80126/CPDR-FFPE-ID-268_2020-01-28_10-26-00/CPDR-FFPE-ID-268.skyd

11 May 2020 16:35:35,564 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-268_2020-01-28_10-26-00/CPDR-FFPE-ID-268.skyd

11 May 2020 16:35:35,572 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-261_2020-01-28_10-30-04.sky.zip; targetedms run ID 86787

11 May 2020 16:35:35,574 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,574 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80132/CPDR-FFPE-ID-261_2020-01-28_10-30-04/CPDR-FFPE-ID-261.skyd

11 May 2020 16:35:35,574 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-261_2020-01-28_10-30-04/CPDR-FFPE-ID-261.skyd

11 May 2020 16:35:35,579 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,579 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80132/CPDR-FFPE-ID-261_2020-01-28_10-30-04.sky.zip

11 May 2020 16:35:35,579 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-261_2020-01-28_10-30-04.sky.zip

11 May 2020 16:35:35,587 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-243_2020-01-28_10-34-12.sky.zip; targetedms run ID 86786

11 May 2020 16:35:35,588 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,588 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80139/CPDR-FFPE-ID-243_2020-01-28_10-34-12/CPDR-FFPE-ID-243.skyd

11 May 2020 16:35:35,589 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-243_2020-01-28_10-34-12/CPDR-FFPE-ID-243.skyd

11 May 2020 16:35:35,593 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,593 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80139/CPDR-FFPE-ID-243_2020-01-28_10-34-12.sky.zip

11 May 2020 16:35:35,593 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-243_2020-01-28_10-34-12.sky.zip

11 May 2020 16:35:35,602 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-273_2020-01-28_10-36-17.sky.zip; targetedms run ID 86785

11 May 2020 16:35:35,603 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,603 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80142/CPDR-FFPE-ID-273_2020-01-28_10-36-17/CPDR-FFPE-ID-273.skyd

11 May 2020 16:35:35,603 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-273_2020-01-28_10-36-17/CPDR-FFPE-ID-273.skyd

11 May 2020 16:35:35,608 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,608 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80142/CPDR-FFPE-ID-273_2020-01-28_10-36-17.sky.zip

11 May 2020 16:35:35,608 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-273_2020-01-28_10-36-17.sky.zip

11 May 2020 16:35:35,616 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-277_2020-01-28_10-36-52.sky.zip; targetedms run ID 86784

11 May 2020 16:35:35,617 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,617 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80143/CPDR-FFPE-ID-277_2020-01-28_10-36-52/CPDR-FFPE-ID-277.skyd

11 May 2020 16:35:35,618 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-277_2020-01-28_10-36-52/CPDR-FFPE-ID-277.skyd

11 May 2020 16:35:35,622 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,622 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80143/CPDR-FFPE-ID-277_2020-01-28_10-36-52.sky.zip

11 May 2020 16:35:35,623 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-277_2020-01-28_10-36-52.sky.zip

11 May 2020 16:35:35,631 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-253_2020-01-28_10-41-49.sky.zip; targetedms run ID 86783

11 May 2020 16:35:35,632 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,632 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80151/CPDR-FFPE-ID-253_2020-01-28_10-41-49/CPDR-FFPE-ID-253.skyd

11 May 2020 16:35:35,632 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-253_2020-01-28_10-41-49/CPDR-FFPE-ID-253.skyd

11 May 2020 16:35:35,637 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,637 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80151/CPDR-FFPE-ID-253_2020-01-28_10-41-49.sky.zip

11 May 2020 16:35:35,637 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-253_2020-01-28_10-41-49.sky.zip

11 May 2020 16:35:35,645 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-325_2020-01-28_10-47-00.sky.zip; targetedms run ID 86782

11 May 2020 16:35:35,646 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,647 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80159/CPDR-FFPE-ID-325_2020-01-28_10-47-00/CPDR-FFPE-ID-325.skyd

11 May 2020 16:35:35,647 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-325_2020-01-28_10-47-00/CPDR-FFPE-ID-325.skyd

11 May 2020 16:35:35,651 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,651 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80159/CPDR-FFPE-ID-325_2020-01-28_10-47-00.sky.zip

11 May 2020 16:35:35,652 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-325_2020-01-28_10-47-00.sky.zip

11 May 2020 16:35:35,660 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-363_2020-01-28_10-49-36.sky.zip; targetedms run ID 86781

11 May 2020 16:35:35,661 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,661 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80163/CPDR-FFPE-ID-363_2020-01-28_10-49-36/CPDR-FFPE-ID-363.skyd

11 May 2020 16:35:35,661 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-363_2020-01-28_10-49-36/CPDR-FFPE-ID-363.skyd

11 May 2020 16:35:35,666 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,666 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80163/CPDR-FFPE-ID-363_2020-01-28_10-49-36.sky.zip

11 May 2020 16:35:35,667 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-363_2020-01-28_10-49-36.sky.zip

11 May 2020 16:35:35,675 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-364_2020-01-28_10-50-14.sky.zip; targetedms run ID 86780

11 May 2020 16:35:35,677 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,677 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80164/CPDR-FFPE-ID-364_2020-01-28_10-50-14/CPDR-FFPE-ID-364.skyd

11 May 2020 16:35:35,677 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-364_2020-01-28_10-50-14/CPDR-FFPE-ID-364.skyd

11 May 2020 16:35:35,682 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,682 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80164/CPDR-FFPE-ID-364_2020-01-28_10-50-14.sky.zip

11 May 2020 16:35:35,682 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-364_2020-01-28_10-50-14.sky.zip

11 May 2020 16:35:35,691 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-86_2020-01-28_10-52-55.sky.zip; targetedms run ID 86779

11 May 2020 16:35:35,693 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,693 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80168/CPDR-FFPE-ID-86_2020-01-28_10-52-55/CPDR-FFPE-ID-86.skyd

11 May 2020 16:35:35,693 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-86_2020-01-28_10-52-55/CPDR-FFPE-ID-86.skyd

11 May 2020 16:35:35,699 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,699 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80168/CPDR-FFPE-ID-86_2020-01-28_10-52-55.sky.zip

11 May 2020 16:35:35,699 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-86_2020-01-28_10-52-55.sky.zip

11 May 2020 16:35:35,709 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-316_2020-01-28_11-05-40.sky.zip; targetedms run ID 86778

11 May 2020 16:35:35,709 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,709 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80186/CPDR-FFPE-ID-316_2020-01-28_11-05-40.sky.zip

11 May 2020 16:35:35,709 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-316_2020-01-28_11-05-40.sky.zip

11 May 2020 16:35:35,715 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,715 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80186/CPDR-FFPE-ID-316_2020-01-28_11-05-40/CPDR-FFPE-ID-316.skyd

11 May 2020 16:35:35,715 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-316_2020-01-28_11-05-40/CPDR-FFPE-ID-316.skyd

11 May 2020 16:35:35,724 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-310_2020-01-28_10-27-27.sky.zip; targetedms run ID 86777

11 May 2020 16:35:35,726 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,726 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80128/CPDR-FFPE-ID-310_2020-01-28_10-27-27/CPDR-FFPE-ID-310.skyd

11 May 2020 16:35:35,726 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-310_2020-01-28_10-27-27/CPDR-FFPE-ID-310.skyd

11 May 2020 16:35:35,731 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,731 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80128/CPDR-FFPE-ID-310_2020-01-28_10-27-27.sky.zip

11 May 2020 16:35:35,731 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-310_2020-01-28_10-27-27.sky.zip

11 May 2020 16:35:35,740 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-256_2020-01-28_10-28-50.sky.zip; targetedms run ID 86776

11 May 2020 16:35:35,741 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,741 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80130/CPDR-FFPE-ID-256_2020-01-28_10-28-50/CPDR-FFPE-ID-256.skyd

11 May 2020 16:35:35,741 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-256_2020-01-28_10-28-50/CPDR-FFPE-ID-256.skyd

11 May 2020 16:35:35,746 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,746 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80130/CPDR-FFPE-ID-256_2020-01-28_10-28-50.sky.zip

11 May 2020 16:35:35,746 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-256_2020-01-28_10-28-50.sky.zip

11 May 2020 16:35:35,755 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-259_2020-01-28_10-29-29.sky.zip; targetedms run ID 86775

11 May 2020 16:35:35,756 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,757 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80131/CPDR-FFPE-ID-259_2020-01-28_10-29-29/CPDR-FFPE-ID-259.skyd

11 May 2020 16:35:35,757 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-259_2020-01-28_10-29-29/CPDR-FFPE-ID-259.skyd

11 May 2020 16:35:35,762 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,762 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80131/CPDR-FFPE-ID-259_2020-01-28_10-29-29.sky.zip

11 May 2020 16:35:35,762 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-259_2020-01-28_10-29-29.sky.zip

11 May 2020 16:35:35,771 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-237_2020-01-28_10-39-35.sky.zip; targetedms run ID 86774

11 May 2020 16:35:35,772 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,772 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80147/CPDR-FFPE-ID-237_2020-01-28_10-39-35/CPDR-FFPE-ID-237.skyd

11 May 2020 16:35:35,772 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-237_2020-01-28_10-39-35/CPDR-FFPE-ID-237.skyd

11 May 2020 16:35:35,777 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,777 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80147/CPDR-FFPE-ID-237_2020-01-28_10-39-35.sky.zip

11 May 2020 16:35:35,777 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-237_2020-01-28_10-39-35.sky.zip

11 May 2020 16:35:35,785 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-246_2020-01-28_10-39-53.sky.zip; targetedms run ID 86773

11 May 2020 16:35:35,787 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,787 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80148/CPDR-FFPE-ID-246_2020-01-28_10-39-53/CPDR-FFPE-ID-246.skyd

11 May 2020 16:35:35,787 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-246_2020-01-28_10-39-53/CPDR-FFPE-ID-246.skyd

11 May 2020 16:35:35,792 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,792 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80148/CPDR-FFPE-ID-246_2020-01-28_10-39-53.sky.zip

11 May 2020 16:35:35,792 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-246_2020-01-28_10-39-53.sky.zip

11 May 2020 16:35:35,800 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-247_2020-01-28_10-40-32.sky.zip; targetedms run ID 86772

11 May 2020 16:35:35,801 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,801 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80149/CPDR-FFPE-ID-247_2020-01-28_10-40-32.sky.zip

11 May 2020 16:35:35,801 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-247_2020-01-28_10-40-32.sky.zip

11 May 2020 16:35:35,806 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,806 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80149/CPDR-FFPE-ID-247_2020-01-28_10-40-32/CPDR-FFPE-ID-247.skyd

11 May 2020 16:35:35,806 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-247_2020-01-28_10-40-32/CPDR-FFPE-ID-247.skyd

11 May 2020 16:35:35,814 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-258_2020-01-28_10-43-03.sky.zip; targetedms run ID 86771

11 May 2020 16:35:35,815 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,815 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80153/CPDR-FFPE-ID-258_2020-01-28_10-43-03.sky.zip

11 May 2020 16:35:35,815 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-258_2020-01-28_10-43-03.sky.zip

11 May 2020 16:35:35,821 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,821 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80153/CPDR-FFPE-ID-258_2020-01-28_10-43-03/CPDR-FFPE-ID-258.skyd

11 May 2020 16:35:35,821 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-258_2020-01-28_10-43-03/CPDR-FFPE-ID-258.skyd

11 May 2020 16:35:35,829 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-367_2020-01-28_10-54-14.sky.zip; targetedms run ID 86770

11 May 2020 16:35:35,830 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,830 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80170/CPDR-FFPE-ID-367_2020-01-28_10-54-14/CPDR-FFPE-ID-367.skyd

11 May 2020 16:35:35,830 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-367_2020-01-28_10-54-14/CPDR-FFPE-ID-367.skyd

11 May 2020 16:35:35,835 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,835 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80170/CPDR-FFPE-ID-367_2020-01-28_10-54-14.sky.zip

11 May 2020 16:35:35,835 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-367_2020-01-28_10-54-14.sky.zip

11 May 2020 16:35:35,843 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-374_2020-01-28_10-55-44.sky.zip; targetedms run ID 86769

11 May 2020 16:35:35,845 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,845 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80171/CPDR-FFPE-ID-374_2020-01-28_10-55-44/CPDR-FFPE-ID-374.skyd

11 May 2020 16:35:35,845 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-374_2020-01-28_10-55-44/CPDR-FFPE-ID-374.skyd

11 May 2020 16:35:35,850 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,850 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80171/CPDR-FFPE-ID-374_2020-01-28_10-55-44.sky.zip

11 May 2020 16:35:35,850 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-374_2020-01-28_10-55-44.sky.zip

11 May 2020 16:35:35,858 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-225_2020-01-28_10-33-37.sky.zip; targetedms run ID 86768

11 May 2020 16:35:35,859 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,859 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80138/CPDR-FFPE-ID-225_2020-01-28_10-33-37/CPDR-FFPE-ID-225.skyd

11 May 2020 16:35:35,859 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-225_2020-01-28_10-33-37/CPDR-FFPE-ID-225.skyd

11 May 2020 16:35:35,864 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,864 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80138/CPDR-FFPE-ID-225_2020-01-28_10-33-37.sky.zip

11 May 2020 16:35:35,864 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-225_2020-01-28_10-33-37.sky.zip

11 May 2020 16:35:35,872 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-338_2020-01-28_10-39-03.sky.zip; targetedms run ID 86767

11 May 2020 16:35:35,874 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,874 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80146/CPDR-FFPE-ID-338_2020-01-28_10-39-03/CPDR-FFPE-ID-338.skyd

11 May 2020 16:35:35,874 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-338_2020-01-28_10-39-03/CPDR-FFPE-ID-338.skyd

11 May 2020 16:35:35,878 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,879 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80146/CPDR-FFPE-ID-338_2020-01-28_10-39-03.sky.zip

11 May 2020 16:35:35,879 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-338_2020-01-28_10-39-03.sky.zip

11 May 2020 16:35:35,887 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-334_2020-01-28_10-47-35.sky.zip; targetedms run ID 86766

11 May 2020 16:35:35,888 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,888 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80160/CPDR-FFPE-ID-334_2020-01-28_10-47-35/CPDR-FFPE-ID-334.skyd

11 May 2020 16:35:35,888 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-334_2020-01-28_10-47-35/CPDR-FFPE-ID-334.skyd

11 May 2020 16:35:35,893 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,893 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80160/CPDR-FFPE-ID-334_2020-01-28_10-47-35.sky.zip

11 May 2020 16:35:35,893 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-334_2020-01-28_10-47-35.sky.zip

11 May 2020 16:35:35,901 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-355_2020-01-28_10-48-20.sky.zip; targetedms run ID 86765

11 May 2020 16:35:35,903 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,903 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80161/CPDR-FFPE-ID-355_2020-01-28_10-48-20/CPDR-FFPE-ID-355.skyd

11 May 2020 16:35:35,903 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-355_2020-01-28_10-48-20/CPDR-FFPE-ID-355.skyd

11 May 2020 16:35:35,907 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,908 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80161/CPDR-FFPE-ID-355_2020-01-28_10-48-20.sky.zip

11 May 2020 16:35:35,908 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-355_2020-01-28_10-48-20.sky.zip

11 May 2020 16:35:35,916 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-359_2020-01-28_10-48-59.sky.zip; targetedms run ID 86764

11 May 2020 16:35:35,917 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,917 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80162/CPDR-FFPE-ID-359_2020-01-28_10-48-59/CPDR-FFPE-ID-359.skyd

11 May 2020 16:35:35,917 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-359_2020-01-28_10-48-59/CPDR-FFPE-ID-359.skyd

11 May 2020 16:35:35,922 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,922 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80162/CPDR-FFPE-ID-359_2020-01-28_10-48-59.sky.zip

11 May 2020 16:35:35,922 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-359_2020-01-28_10-48-59.sky.zip

11 May 2020 16:35:35,930 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-322_2020-01-28_10-51-37.sky.zip; targetedms run ID 86763

11 May 2020 16:35:35,932 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,932 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80166/CPDR-FFPE-ID-322_2020-01-28_10-51-37/CPDR-FFPE-ID-322.skyd

11 May 2020 16:35:35,932 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-322_2020-01-28_10-51-37/CPDR-FFPE-ID-322.skyd

11 May 2020 16:35:35,936 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,937 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80166/CPDR-FFPE-ID-322_2020-01-28_10-51-37.sky.zip

11 May 2020 16:35:35,937 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-322_2020-01-28_10-51-37.sky.zip

11 May 2020 16:35:35,945 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-350_2020-01-28_10-58-15.sky.zip; targetedms run ID 86762

11 May 2020 16:35:35,946 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,946 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80175/CPDR-FFPE-ID-350_2020-01-28_10-58-15/CPDR-FFPE-ID-350.skyd

11 May 2020 16:35:35,946 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-350_2020-01-28_10-58-15/CPDR-FFPE-ID-350.skyd

11 May 2020 16:35:35,951 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,951 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80175/CPDR-FFPE-ID-350_2020-01-28_10-58-15.sky.zip

11 May 2020 16:35:35,951 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-350_2020-01-28_10-58-15.sky.zip

11 May 2020 16:35:35,959 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-376_2020-01-28_11-01-31.sky.zip; targetedms run ID 86761

11 May 2020 16:35:35,961 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,961 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80180/CPDR-FFPE-ID-376_2020-01-28_11-01-31/CPDR-FFPE-ID-376.skyd

11 May 2020 16:35:35,961 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-376_2020-01-28_11-01-31/CPDR-FFPE-ID-376.skyd

11 May 2020 16:35:35,965 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,966 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80180/CPDR-FFPE-ID-376_2020-01-28_11-01-31.sky.zip

11 May 2020 16:35:35,966 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-376_2020-01-28_11-01-31.sky.zip

11 May 2020 16:35:35,974 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-92_2020-01-28_11-02-53.sky.zip; targetedms run ID 86760

11 May 2020 16:35:35,975 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,975 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80182/CPDR-FFPE-ID-92_2020-01-28_11-02-53.sky.zip

11 May 2020 16:35:35,975 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-92_2020-01-28_11-02-53.sky.zip

11 May 2020 16:35:35,980 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,981 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80182/CPDR-FFPE-ID-92_2020-01-28_11-02-53/CPDR-FFPE-ID-92.skyd

11 May 2020 16:35:35,981 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-92_2020-01-28_11-02-53/CPDR-FFPE-ID-92.skyd

11 May 2020 16:35:35,989 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-306_2020-01-28_10-46-01.sky.zip; targetedms run ID 86759

11 May 2020 16:35:35,990 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,990 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80158/CPDR-FFPE-ID-306_2020-01-28_10-46-01/CPDR-FFPE-ID-306.skyd

11 May 2020 16:35:35,990 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-306_2020-01-28_10-46-01/CPDR-FFPE-ID-306.skyd

11 May 2020 16:35:35,995 INFO : Updating dataFileUrl...

11 May 2020 16:35:35,995 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80158/CPDR-FFPE-ID-306_2020-01-28_10-46-01.sky.zip

11 May 2020 16:35:35,995 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-306_2020-01-28_10-46-01.sky.zip

11 May 2020 16:35:36,004 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-349_2020-01-28_10-50-58.sky.zip; targetedms run ID 86758

11 May 2020 16:35:36,005 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,005 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80165/CPDR-FFPE-ID-349_2020-01-28_10-50-58/CPDR-FFPE-ID-349.skyd

11 May 2020 16:35:36,005 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-349_2020-01-28_10-50-58/CPDR-FFPE-ID-349.skyd

11 May 2020 16:35:36,010 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,010 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80165/CPDR-FFPE-ID-349_2020-01-28_10-50-58.sky.zip

11 May 2020 16:35:36,010 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-349_2020-01-28_10-50-58.sky.zip

11 May 2020 16:35:36,018 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-330_2020-01-28_10-52-13.sky.zip; targetedms run ID 86757

11 May 2020 16:35:36,020 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,020 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80167/CPDR-FFPE-ID-330_2020-01-28_10-52-13/CPDR-FFPE-ID-330.skyd

11 May 2020 16:35:36,020 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-330_2020-01-28_10-52-13/CPDR-FFPE-ID-330.skyd

11 May 2020 16:35:36,024 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,025 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80167/CPDR-FFPE-ID-330_2020-01-28_10-52-13.sky.zip

11 May 2020 16:35:36,025 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-330_2020-01-28_10-52-13.sky.zip

11 May 2020 16:35:36,033 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-40_2020-01-28_10-56-22.sky.zip; targetedms run ID 86756

11 May 2020 16:35:36,034 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,034 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80172/CPDR-FFPE-ID-40_2020-01-28_10-56-22/CPDR-FFPE-ID-40.skyd

11 May 2020 16:35:36,034 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-40_2020-01-28_10-56-22/CPDR-FFPE-ID-40.skyd

11 May 2020 16:35:36,039 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,039 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80172/CPDR-FFPE-ID-40_2020-01-28_10-56-22.sky.zip

11 May 2020 16:35:36,039 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-40_2020-01-28_10-56-22.sky.zip

11 May 2020 16:35:36,047 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-116_2020-01-28_10-56-59.sky.zip; targetedms run ID 86755

11 May 2020 16:35:36,049 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,049 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80173/CPDR-FFPE-ID-116_2020-01-28_10-56-59/CPDR-FFPE-ID-116.skyd

11 May 2020 16:35:36,049 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-116_2020-01-28_10-56-59/CPDR-FFPE-ID-116.skyd

11 May 2020 16:35:36,053 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,054 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80173/CPDR-FFPE-ID-116_2020-01-28_10-56-59.sky.zip

11 May 2020 16:35:36,054 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-116_2020-01-28_10-56-59.sky.zip

11 May 2020 16:35:36,062 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-353_2020-01-28_10-58-54.sky.zip; targetedms run ID 86754

11 May 2020 16:35:36,063 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,063 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80176/CPDR-FFPE-ID-353_2020-01-28_10-58-54/CPDR-FFPE-ID-353.skyd

11 May 2020 16:35:36,063 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-353_2020-01-28_10-58-54/CPDR-FFPE-ID-353.skyd

11 May 2020 16:35:36,068 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,068 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80176/CPDR-FFPE-ID-353_2020-01-28_10-58-54.sky.zip

11 May 2020 16:35:36,068 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-353_2020-01-28_10-58-54.sky.zip

11 May 2020 16:35:36,077 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-390_2020-01-28_10-59-33.sky.zip; targetedms run ID 86753

11 May 2020 16:35:36,078 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,078 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80177/CPDR-FFPE-ID-390_2020-01-28_10-59-33/CPDR-FFPE-ID-390.skyd

11 May 2020 16:35:36,078 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-390_2020-01-28_10-59-33/CPDR-FFPE-ID-390.skyd

11 May 2020 16:35:36,083 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,083 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80177/CPDR-FFPE-ID-390_2020-01-28_10-59-33.sky.zip

11 May 2020 16:35:36,083 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-390_2020-01-28_10-59-33.sky.zip

11 May 2020 16:35:36,091 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-384_2020-01-28_11-06-23.sky.zip; targetedms run ID 86752

11 May 2020 16:35:36,093 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,093 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80187/CPDR-FFPE-ID-384_2020-01-28_11-06-23/CPDR-FFPE-ID-384.skyd

11 May 2020 16:35:36,093 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-384_2020-01-28_11-06-23/CPDR-FFPE-ID-384.skyd

11 May 2020 16:35:36,098 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,098 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80187/CPDR-FFPE-ID-384_2020-01-28_11-06-23.sky.zip

11 May 2020 16:35:36,098 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-384_2020-01-28_11-06-23.sky.zip

11 May 2020 16:35:36,106 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-344_2020-01-28_10-57-38.sky.zip; targetedms run ID 86751

11 May 2020 16:35:36,107 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,107 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80174/CPDR-FFPE-ID-344_2020-01-28_10-57-38/CPDR-FFPE-ID-344.skyd

11 May 2020 16:35:36,107 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-344_2020-01-28_10-57-38/CPDR-FFPE-ID-344.skyd

11 May 2020 16:35:36,112 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,112 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80174/CPDR-FFPE-ID-344_2020-01-28_10-57-38.sky.zip

11 May 2020 16:35:36,112 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-344_2020-01-28_10-57-38.sky.zip

11 May 2020 16:35:36,120 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-346_2020-01-28_11-03-33.sky.zip; targetedms run ID 86750

11 May 2020 16:35:36,122 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,122 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80183/CPDR-FFPE-ID-346_2020-01-28_11-03-33/CPDR-FFPE-ID-346.skyd

11 May 2020 16:35:36,122 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-346_2020-01-28_11-03-33/CPDR-FFPE-ID-346.skyd

11 May 2020 16:35:36,127 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,127 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80183/CPDR-FFPE-ID-346_2020-01-28_11-03-33.sky.zip

11 May 2020 16:35:36,127 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-346_2020-01-28_11-03-33.sky.zip

11 May 2020 16:35:36,135 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-416_2020-01-28_11-04-53.sky.zip; targetedms run ID 86749

11 May 2020 16:35:36,136 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,136 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80185/CPDR-FFPE-ID-416_2020-01-28_11-04-53/CPDR-FFPE-ID-416.skyd

11 May 2020 16:35:36,137 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-416_2020-01-28_11-04-53/CPDR-FFPE-ID-416.skyd

11 May 2020 16:35:36,141 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,141 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80185/CPDR-FFPE-ID-416_2020-01-28_11-04-53.sky.zip

11 May 2020 16:35:36,141 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-416_2020-01-28_11-04-53.sky.zip

11 May 2020 16:35:36,150 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-8_seg1_2020-01-28_09-50-24.sky.zip; targetedms run ID 86748

11 May 2020 16:35:36,150 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,150 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80049/CPDR-FFPE-ID-8_seg1_2020-01-28_09-50-24.sky.zip

11 May 2020 16:35:36,150 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-8_seg1_2020-01-28_09-50-24.sky.zip

11 May 2020 16:35:36,156 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,156 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80049/CPDR-FFPE-ID-8_seg1_2020-01-28_09-50-24/CPDR-FFPE-ID-8_seg1.skyd

11 May 2020 16:35:36,156 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-8_seg1_2020-01-28_09-50-24/CPDR-FFPE-ID-8_seg1.skyd

11 May 2020 16:35:36,164 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-13_seg1_2020-01-28_09-51-10.sky.zip; targetedms run ID 86747

11 May 2020 16:35:36,165 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,165 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80051/CPDR-FFPE-ID-13_seg1_2020-01-28_09-51-10.sky.zip

11 May 2020 16:35:36,165 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-13_seg1_2020-01-28_09-51-10.sky.zip

11 May 2020 16:35:36,170 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,170 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80051/CPDR-FFPE-ID-13_seg1_2020-01-28_09-51-10/CPDR-FFPE-ID-13_seg1.skyd

11 May 2020 16:35:36,170 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-13_seg1_2020-01-28_09-51-10/CPDR-FFPE-ID-13_seg1.skyd

11 May 2020 16:35:36,179 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-16_seg1_2020-01-28_09-51-48.sky.zip; targetedms run ID 86746

11 May 2020 16:35:36,179 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,179 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80053/CPDR-FFPE-ID-16_seg1_2020-01-28_09-51-48.sky.zip

11 May 2020 16:35:36,179 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-16_seg1_2020-01-28_09-51-48.sky.zip

11 May 2020 16:35:36,185 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,185 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80053/CPDR-FFPE-ID-16_seg1_2020-01-28_09-51-48/CPDR-FFPE-ID-16_seg1.skyd

11 May 2020 16:35:36,185 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-16_seg1_2020-01-28_09-51-48/CPDR-FFPE-ID-16_seg1.skyd

11 May 2020 16:35:36,193 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-91_seg1_2020-01-28_09-54-36.sky.zip; targetedms run ID 86745

11 May 2020 16:35:36,194 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,194 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80064/CPDR-FFPE-ID-91_seg1_2020-01-28_09-54-36.sky.zip

11 May 2020 16:35:36,194 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-91_seg1_2020-01-28_09-54-36.sky.zip

11 May 2020 16:35:36,199 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,199 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80064/CPDR-FFPE-ID-91_seg1_2020-01-28_09-54-36/CPDR-FFPE-ID-91_seg1.skyd

11 May 2020 16:35:36,199 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-91_seg1_2020-01-28_09-54-36/CPDR-FFPE-ID-91_seg1.skyd

11 May 2020 16:35:36,208 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-152_seg1_2020-01-28_09-55-37.sky.zip; targetedms run ID 86744

11 May 2020 16:35:36,208 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,208 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80067/CPDR-FFPE-ID-152_seg1_2020-01-28_09-55-37.sky.zip

11 May 2020 16:35:36,208 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-152_seg1_2020-01-28_09-55-37.sky.zip

11 May 2020 16:35:36,214 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,214 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80067/CPDR-FFPE-ID-152_seg1_2020-01-28_09-55-37/CPDR-FFPE-ID-152_seg1.skyd

11 May 2020 16:35:36,214 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-152_seg1_2020-01-28_09-55-37/CPDR-FFPE-ID-152_seg1.skyd

11 May 2020 16:35:36,222 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-500_seg1_2020-01-28_09-57-46.sky.zip; targetedms run ID 86743

11 May 2020 16:35:36,223 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,223 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80073/CPDR-FFPE-ID-500_seg1_2020-01-28_09-57-46.sky.zip

11 May 2020 16:35:36,223 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-500_seg1_2020-01-28_09-57-46.sky.zip

11 May 2020 16:35:36,228 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,228 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80073/CPDR-FFPE-ID-500_seg1_2020-01-28_09-57-46/CPDR-FFPE-ID-500_seg1.skyd

11 May 2020 16:35:36,229 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-500_seg1_2020-01-28_09-57-46/CPDR-FFPE-ID-500_seg1.skyd

11 May 2020 16:35:36,237 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-9_seg2_2020-01-28_10-00-45.sky.zip; targetedms run ID 86742

11 May 2020 16:35:36,237 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,237 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80080/CPDR-FFPE-ID-9_seg2_2020-01-28_10-00-45.sky.zip

11 May 2020 16:35:36,237 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-9_seg2_2020-01-28_10-00-45.sky.zip

11 May 2020 16:35:36,286 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,286 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80080/CPDR-FFPE-ID-9_seg2_2020-01-28_10-00-45/CPDR-FFPE-ID-9_seg2.skyd

11 May 2020 16:35:36,286 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-9_seg2_2020-01-28_10-00-45/CPDR-FFPE-ID-9_seg2.skyd

11 May 2020 16:35:36,296 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-56_seg2_2020-01-28_10-02-55.sky.zip; targetedms run ID 86741

11 May 2020 16:35:36,296 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,296 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80084/CPDR-FFPE-ID-56_seg2_2020-01-28_10-02-55.sky.zip

11 May 2020 16:35:36,297 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-56_seg2_2020-01-28_10-02-55.sky.zip

11 May 2020 16:35:36,303 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,303 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80084/CPDR-FFPE-ID-56_seg2_2020-01-28_10-02-55/CPDR-FFPE-ID-56_seg2.skyd

11 May 2020 16:35:36,303 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-56_seg2_2020-01-28_10-02-55/CPDR-FFPE-ID-56_seg2.skyd

11 May 2020 16:35:36,312 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-57_seg2_2020-01-28_10-03-33.sky.zip; targetedms run ID 86740

11 May 2020 16:35:36,312 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,313 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80085/CPDR-FFPE-ID-57_seg2_2020-01-28_10-03-33.sky.zip

11 May 2020 16:35:36,313 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-57_seg2_2020-01-28_10-03-33.sky.zip

11 May 2020 16:35:36,319 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,319 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80085/CPDR-FFPE-ID-57_seg2_2020-01-28_10-03-33/CPDR-FFPE-ID-57_seg2.skyd

11 May 2020 16:35:36,319 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-57_seg2_2020-01-28_10-03-33/CPDR-FFPE-ID-57_seg2.skyd

11 May 2020 16:35:36,327 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-89_seg2_2020-01-28_10-05-24.sky.zip; targetedms run ID 86739

11 May 2020 16:35:36,328 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,328 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80089/CPDR-FFPE-ID-89_seg2_2020-01-28_10-05-24.sky.zip

11 May 2020 16:35:36,328 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-89_seg2_2020-01-28_10-05-24.sky.zip

11 May 2020 16:35:36,334 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,334 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80089/CPDR-FFPE-ID-89_seg2_2020-01-28_10-05-24/CPDR-FFPE-ID-89_seg2.skyd

11 May 2020 16:35:36,334 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-89_seg2_2020-01-28_10-05-24/CPDR-FFPE-ID-89_seg2.skyd

11 May 2020 16:35:36,343 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-56_seg1_2020-01-28_09-52-11.sky.zip; targetedms run ID 86738

11 May 2020 16:35:36,344 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,344 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80054/CPDR-FFPE-ID-56_seg1_2020-01-28_09-52-11/CPDR-FFPE-ID-56_seg1.skyd

11 May 2020 16:35:36,344 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-56_seg1_2020-01-28_09-52-11/CPDR-FFPE-ID-56_seg1.skyd

11 May 2020 16:35:36,349 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,349 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80054/CPDR-FFPE-ID-56_seg1_2020-01-28_09-52-11.sky.zip

11 May 2020 16:35:36,349 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-56_seg1_2020-01-28_09-52-11.sky.zip

11 May 2020 16:35:36,358 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-90_seg1_2020-01-28_09-54-09.sky.zip; targetedms run ID 86737

11 May 2020 16:35:36,359 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,359 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80063/CPDR-FFPE-ID-90_seg1_2020-01-28_09-54-09.sky.zip

11 May 2020 16:35:36,359 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-90_seg1_2020-01-28_09-54-09.sky.zip

11 May 2020 16:35:36,364 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,364 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80063/CPDR-FFPE-ID-90_seg1_2020-01-28_09-54-09/CPDR-FFPE-ID-90_seg1.skyd

11 May 2020 16:35:36,365 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-90_seg1_2020-01-28_09-54-09/CPDR-FFPE-ID-90_seg1.skyd

11 May 2020 16:35:36,373 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-141_seg1_2020-01-28_09-55-17.sky.zip; targetedms run ID 86736

11 May 2020 16:35:36,374 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,374 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80066/CPDR-FFPE-ID-141_seg1_2020-01-28_09-55-17.sky.zip

11 May 2020 16:35:36,374 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-141_seg1_2020-01-28_09-55-17.sky.zip

11 May 2020 16:35:36,379 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,379 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80066/CPDR-FFPE-ID-141_seg1_2020-01-28_09-55-17/CPDR-FFPE-ID-141_seg1.skyd

11 May 2020 16:35:36,380 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-141_seg1_2020-01-28_09-55-17/CPDR-FFPE-ID-141_seg1.skyd

11 May 2020 16:35:36,388 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-362_seg1_2020-01-28_09-57-31.sky.zip; targetedms run ID 86735

11 May 2020 16:35:36,388 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,388 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80072/CPDR-FFPE-ID-362_seg1_2020-01-28_09-57-31.sky.zip

11 May 2020 16:35:36,389 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-362_seg1_2020-01-28_09-57-31.sky.zip

11 May 2020 16:35:36,394 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,394 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80072/CPDR-FFPE-ID-362_seg1_2020-01-28_09-57-31/CPDR-FFPE-ID-362_seg1.skyd

11 May 2020 16:35:36,394 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-362_seg1_2020-01-28_09-57-31/CPDR-FFPE-ID-362_seg1.skyd

11 May 2020 16:35:36,402 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-620_seg1_2020-01-28_09-58-12.sky.zip; targetedms run ID 86734

11 May 2020 16:35:36,403 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,403 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80074/CPDR-FFPE-ID-620_seg1_2020-01-28_09-58-12.sky.zip

11 May 2020 16:35:36,403 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-620_seg1_2020-01-28_09-58-12.sky.zip

11 May 2020 16:35:36,408 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,408 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80074/CPDR-FFPE-ID-620_seg1_2020-01-28_09-58-12/CPDR-FFPE-ID-620_seg1.skyd

11 May 2020 16:35:36,409 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-620_seg1_2020-01-28_09-58-12/CPDR-FFPE-ID-620_seg1.skyd

11 May 2020 16:35:36,417 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-2_seg2_2020-01-28_09-59-31.sky.zip; targetedms run ID 86733

11 May 2020 16:35:36,417 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,417 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80078/CPDR-FFPE-ID-2_seg2_2020-01-28_09-59-31.sky.zip

11 May 2020 16:35:36,417 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-2_seg2_2020-01-28_09-59-31.sky.zip

11 May 2020 16:35:36,423 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,423 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80078/CPDR-FFPE-ID-2_seg2_2020-01-28_09-59-31/CPDR-FFPE-ID-2_seg2.skyd

11 May 2020 16:35:36,423 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-2_seg2_2020-01-28_09-59-31/CPDR-FFPE-ID-2_seg2.skyd

11 May 2020 16:35:36,431 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-8_seg2_2020-01-28_10-00-10.sky.zip; targetedms run ID 86732

11 May 2020 16:35:36,432 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,432 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80079/CPDR-FFPE-ID-8_seg2_2020-01-28_10-00-10.sky.zip

11 May 2020 16:35:36,432 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-8_seg2_2020-01-28_10-00-10.sky.zip

11 May 2020 16:35:36,437 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,437 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80079/CPDR-FFPE-ID-8_seg2_2020-01-28_10-00-10/CPDR-FFPE-ID-8_seg2.skyd

11 May 2020 16:35:36,438 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-8_seg2_2020-01-28_10-00-10/CPDR-FFPE-ID-8_seg2.skyd

11 May 2020 16:35:36,446 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-13_seg2_2020-01-28_10-01-19.sky.zip; targetedms run ID 86731

11 May 2020 16:35:36,446 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,446 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80081/CPDR-FFPE-ID-13_seg2_2020-01-28_10-01-19.sky.zip

11 May 2020 16:35:36,446 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-13_seg2_2020-01-28_10-01-19.sky.zip

11 May 2020 16:35:36,452 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,452 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80081/CPDR-FFPE-ID-13_seg2_2020-01-28_10-01-19/CPDR-FFPE-ID-13_seg2.skyd

11 May 2020 16:35:36,452 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-13_seg2_2020-01-28_10-01-19/CPDR-FFPE-ID-13_seg2.skyd

11 May 2020 16:35:36,460 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-82_seg2_2020-01-28_10-04-52.sky.zip; targetedms run ID 86730

11 May 2020 16:35:36,461 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,461 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80088/CPDR-FFPE-ID-82_seg2_2020-01-28_10-04-52.sky.zip

11 May 2020 16:35:36,461 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-82_seg2_2020-01-28_10-04-52.sky.zip

11 May 2020 16:35:36,466 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,466 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80088/CPDR-FFPE-ID-82_seg2_2020-01-28_10-04-52/CPDR-FFPE-ID-82_seg2.skyd

11 May 2020 16:35:36,467 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-82_seg2_2020-01-28_10-04-52/CPDR-FFPE-ID-82_seg2.skyd

11 May 2020 16:35:36,475 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-90_seg2_2020-01-28_10-05-57.sky.zip; targetedms run ID 86729

11 May 2020 16:35:36,475 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,475 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80090/CPDR-FFPE-ID-90_seg2_2020-01-28_10-05-57.sky.zip

11 May 2020 16:35:36,475 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-90_seg2_2020-01-28_10-05-57.sky.zip

11 May 2020 16:35:36,481 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,481 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80090/CPDR-FFPE-ID-90_seg2_2020-01-28_10-05-57/CPDR-FFPE-ID-90_seg2.skyd

11 May 2020 16:35:36,481 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-90_seg2_2020-01-28_10-05-57/CPDR-FFPE-ID-90_seg2.skyd

11 May 2020 16:35:36,489 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-2_seg1_2020-01-28_09-50-04.sky.zip; targetedms run ID 86728

11 May 2020 16:35:36,490 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,490 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80048/CPDR-FFPE-ID-2_seg1_2020-01-28_09-50-04.sky.zip

11 May 2020 16:35:36,490 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-2_seg1_2020-01-28_09-50-04.sky.zip

11 May 2020 16:35:36,495 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,496 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80048/CPDR-FFPE-ID-2_seg1_2020-01-28_09-50-04/CPDR-FFPE-ID-2_seg1.skyd

11 May 2020 16:35:36,496 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-2_seg1_2020-01-28_09-50-04/CPDR-FFPE-ID-2_seg1.skyd

11 May 2020 16:35:36,504 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-9_seg1_2020-01-28_09-50-48.sky.zip; targetedms run ID 86727

11 May 2020 16:35:36,505 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,505 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80050/CPDR-FFPE-ID-9_seg1_2020-01-28_09-50-48/CPDR-FFPE-ID-9_seg1.skyd

11 May 2020 16:35:36,505 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-9_seg1_2020-01-28_09-50-48/CPDR-FFPE-ID-9_seg1.skyd

11 May 2020 16:35:36,510 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,510 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80050/CPDR-FFPE-ID-9_seg1_2020-01-28_09-50-48.sky.zip

11 May 2020 16:35:36,510 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-9_seg1_2020-01-28_09-50-48.sky.zip

11 May 2020 16:35:36,518 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-14_seg1_2020-01-28_09-51-30.sky.zip; targetedms run ID 86726

11 May 2020 16:35:36,519 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,519 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80052/CPDR-FFPE-ID-14_seg1_2020-01-28_09-51-30.sky.zip

11 May 2020 16:35:36,519 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-14_seg1_2020-01-28_09-51-30.sky.zip

11 May 2020 16:35:36,524 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,524 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80052/CPDR-FFPE-ID-14_seg1_2020-01-28_09-51-30/CPDR-FFPE-ID-14_seg1.skyd

11 May 2020 16:35:36,525 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-14_seg1_2020-01-28_09-51-30/CPDR-FFPE-ID-14_seg1.skyd

11 May 2020 16:35:36,533 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-82_seg1_2020-01-28_09-53-29.sky.zip; targetedms run ID 86725

11 May 2020 16:35:36,534 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,534 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80058/CPDR-FFPE-ID-82_seg1_2020-01-28_09-53-29/CPDR-FFPE-ID-82_seg1.skyd

11 May 2020 16:35:36,534 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-82_seg1_2020-01-28_09-53-29/CPDR-FFPE-ID-82_seg1.skyd

11 May 2020 16:35:36,539 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,539 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80058/CPDR-FFPE-ID-82_seg1_2020-01-28_09-53-29.sky.zip

11 May 2020 16:35:36,539 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-82_seg1_2020-01-28_09-53-29.sky.zip

11 May 2020 16:35:36,547 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-105_seg1_2020-01-28_09-54-55.sky.zip; targetedms run ID 86724

11 May 2020 16:35:36,548 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,548 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80065/CPDR-FFPE-ID-105_seg1_2020-01-28_09-54-55.sky.zip

11 May 2020 16:35:36,548 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-105_seg1_2020-01-28_09-54-55.sky.zip

11 May 2020 16:35:36,553 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,553 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80065/CPDR-FFPE-ID-105_seg1_2020-01-28_09-54-55/CPDR-FFPE-ID-105_seg1.skyd

11 May 2020 16:35:36,554 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-105_seg1_2020-01-28_09-54-55/CPDR-FFPE-ID-105_seg1.skyd

11 May 2020 16:35:36,562 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-304_seg1_2020-01-28_09-56-41.sky.zip; targetedms run ID 86723

11 May 2020 16:35:36,562 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,562 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80070/CPDR-FFPE-ID-304_seg1_2020-01-28_09-56-41.sky.zip

11 May 2020 16:35:36,562 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-304_seg1_2020-01-28_09-56-41.sky.zip

11 May 2020 16:35:36,568 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,568 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80070/CPDR-FFPE-ID-304_seg1_2020-01-28_09-56-41/CPDR-FFPE-ID-304_seg1.skyd

11 May 2020 16:35:36,568 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-304_seg1_2020-01-28_09-56-41/CPDR-FFPE-ID-304_seg1.skyd

11 May 2020 16:35:36,576 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-745_seg1_2020-01-28_09-58-47.sky.zip; targetedms run ID 86722

11 May 2020 16:35:36,577 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,577 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80076/CPDR-FFPE-ID-745_seg1_2020-01-28_09-58-47.sky.zip

11 May 2020 16:35:36,577 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-745_seg1_2020-01-28_09-58-47.sky.zip

11 May 2020 16:35:36,582 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,582 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80076/CPDR-FFPE-ID-745_seg1_2020-01-28_09-58-47/CPDR-FFPE-ID-745_seg1.skyd

11 May 2020 16:35:36,582 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-745_seg1_2020-01-28_09-58-47/CPDR-FFPE-ID-745_seg1.skyd

11 May 2020 16:35:36,590 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-991_seg1_2020-01-28_09-59-06.sky.zip; targetedms run ID 86721

11 May 2020 16:35:36,591 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,591 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80077/CPDR-FFPE-ID-991_seg1_2020-01-28_09-59-06.sky.zip

11 May 2020 16:35:36,591 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-991_seg1_2020-01-28_09-59-06.sky.zip

11 May 2020 16:35:36,597 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,597 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80077/CPDR-FFPE-ID-991_seg1_2020-01-28_09-59-06/CPDR-FFPE-ID-991_seg1.skyd

11 May 2020 16:35:36,597 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-991_seg1_2020-01-28_09-59-06/CPDR-FFPE-ID-991_seg1.skyd

11 May 2020 16:35:36,605 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-16_seg2_2020-01-28_10-02-20.sky.zip; targetedms run ID 86720

11 May 2020 16:35:36,606 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,606 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80083/CPDR-FFPE-ID-16_seg2_2020-01-28_10-02-20/CPDR-FFPE-ID-16_seg2.skyd

11 May 2020 16:35:36,606 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-16_seg2_2020-01-28_10-02-20/CPDR-FFPE-ID-16_seg2.skyd

11 May 2020 16:35:36,611 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,611 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80083/CPDR-FFPE-ID-16_seg2_2020-01-28_10-02-20.sky.zip

11 May 2020 16:35:36,611 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-16_seg2_2020-01-28_10-02-20.sky.zip

11 May 2020 16:35:36,619 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-66_seg2_2020-01-28_10-04-05.sky.zip; targetedms run ID 86719

11 May 2020 16:35:36,620 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,620 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80086/CPDR-FFPE-ID-66_seg2_2020-01-28_10-04-05.sky.zip

11 May 2020 16:35:36,620 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-66_seg2_2020-01-28_10-04-05.sky.zip

11 May 2020 16:35:36,625 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,626 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80086/CPDR-FFPE-ID-66_seg2_2020-01-28_10-04-05/CPDR-FFPE-ID-66_seg2.skyd

11 May 2020 16:35:36,626 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-66_seg2_2020-01-28_10-04-05/CPDR-FFPE-ID-66_seg2.skyd

11 May 2020 16:35:36,634 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-91_seg2_2020-01-28_10-06-31.sky.zip; targetedms run ID 86718

11 May 2020 16:35:36,635 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,635 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80091/CPDR-FFPE-ID-91_seg2_2020-01-28_10-06-31/CPDR-FFPE-ID-91_seg2.skyd

11 May 2020 16:35:36,635 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-91_seg2_2020-01-28_10-06-31/CPDR-FFPE-ID-91_seg2.skyd

11 May 2020 16:35:36,640 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,640 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80091/CPDR-FFPE-ID-91_seg2_2020-01-28_10-06-31.sky.zip

11 May 2020 16:35:36,640 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-91_seg2_2020-01-28_10-06-31.sky.zip

11 May 2020 16:35:36,648 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-141_seg2_2020-01-28_10-07-42.sky.zip; targetedms run ID 86717

11 May 2020 16:35:36,649 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,649 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80096/CPDR-FFPE-ID-141_seg2_2020-01-28_10-07-42.sky.zip

11 May 2020 16:35:36,649 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-141_seg2_2020-01-28_10-07-42.sky.zip

11 May 2020 16:35:36,654 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,654 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80096/CPDR-FFPE-ID-141_seg2_2020-01-28_10-07-42/CPDR-FFPE-ID-141_seg2.skyd

11 May 2020 16:35:36,654 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-141_seg2_2020-01-28_10-07-42/CPDR-FFPE-ID-141_seg2.skyd

11 May 2020 16:35:36,663 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-152_seg2_2020-01-28_10-08-15.sky.zip; targetedms run ID 86716

11 May 2020 16:35:36,663 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,663 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80097/CPDR-FFPE-ID-152_seg2_2020-01-28_10-08-15.sky.zip

11 May 2020 16:35:36,663 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-152_seg2_2020-01-28_10-08-15.sky.zip

11 May 2020 16:35:36,669 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,669 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80097/CPDR-FFPE-ID-152_seg2_2020-01-28_10-08-15/CPDR-FFPE-ID-152_seg2.skyd

11 May 2020 16:35:36,669 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-152_seg2_2020-01-28_10-08-15/CPDR-FFPE-ID-152_seg2.skyd

11 May 2020 16:35:36,677 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-167_seg2_2020-01-28_10-09-20.sky.zip; targetedms run ID 86715

11 May 2020 16:35:36,678 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,678 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80099/CPDR-FFPE-ID-167_seg2_2020-01-28_10-09-20/CPDR-FFPE-ID-167_seg2.skyd

11 May 2020 16:35:36,679 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-167_seg2_2020-01-28_10-09-20/CPDR-FFPE-ID-167_seg2.skyd

11 May 2020 16:35:36,683 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,683 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80099/CPDR-FFPE-ID-167_seg2_2020-01-28_10-09-20.sky.zip

11 May 2020 16:35:36,683 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-167_seg2_2020-01-28_10-09-20.sky.zip

11 May 2020 16:35:36,692 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-304_seg2_2020-01-28_10-09-51.sky.zip; targetedms run ID 86714

11 May 2020 16:35:36,692 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,692 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80100/CPDR-FFPE-ID-304_seg2_2020-01-28_10-09-51.sky.zip

11 May 2020 16:35:36,692 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-304_seg2_2020-01-28_10-09-51.sky.zip

11 May 2020 16:35:36,698 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,698 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80100/CPDR-FFPE-ID-304_seg2_2020-01-28_10-09-51/CPDR-FFPE-ID-304_seg2.skyd

11 May 2020 16:35:36,698 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-304_seg2_2020-01-28_10-09-51/CPDR-FFPE-ID-304_seg2.skyd

11 May 2020 16:35:36,706 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-500_seg2_2020-01-28_10-11-25.sky.zip; targetedms run ID 86713

11 May 2020 16:35:36,707 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,707 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80104/CPDR-FFPE-ID-500_seg2_2020-01-28_10-11-25.sky.zip

11 May 2020 16:35:36,707 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-500_seg2_2020-01-28_10-11-25.sky.zip

11 May 2020 16:35:36,712 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,712 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80104/CPDR-FFPE-ID-500_seg2_2020-01-28_10-11-25/CPDR-FFPE-ID-500_seg2.skyd

11 May 2020 16:35:36,713 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-500_seg2_2020-01-28_10-11-25/CPDR-FFPE-ID-500_seg2.skyd

11 May 2020 16:35:36,721 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-991_seg2_2020-01-28_10-17-39.sky.zip; targetedms run ID 86712

11 May 2020 16:35:36,722 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,722 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80108/CPDR-FFPE-ID-991_seg2_2020-01-28_10-17-39.sky.zip

11 May 2020 16:35:36,722 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-991_seg2_2020-01-28_10-17-39.sky.zip

11 May 2020 16:35:36,727 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,727 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80108/CPDR-FFPE-ID-991_seg2_2020-01-28_10-17-39/CPDR-FFPE-ID-991_seg2.skyd

11 May 2020 16:35:36,727 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-991_seg2_2020-01-28_10-17-39/CPDR-FFPE-ID-991_seg2.skyd

11 May 2020 16:35:36,735 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-57_seg1_2020-01-28_09-52-35.sky.zip; targetedms run ID 86711

11 May 2020 16:35:36,736 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,736 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80055/CPDR-FFPE-ID-57_seg1_2020-01-28_09-52-35.sky.zip

11 May 2020 16:35:36,736 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-57_seg1_2020-01-28_09-52-35.sky.zip

11 May 2020 16:35:36,742 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,742 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80055/CPDR-FFPE-ID-57_seg1_2020-01-28_09-52-35/CPDR-FFPE-ID-57_seg1.skyd

11 May 2020 16:35:36,742 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-57_seg1_2020-01-28_09-52-35/CPDR-FFPE-ID-57_seg1.skyd

11 May 2020 16:35:36,750 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-66_seg1_2020-01-28_09-52-46.sky.zip; targetedms run ID 86710

11 May 2020 16:35:36,750 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,751 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80056/CPDR-FFPE-ID-66_seg1_2020-01-28_09-52-46.sky.zip

11 May 2020 16:35:36,751 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-66_seg1_2020-01-28_09-52-46.sky.zip

11 May 2020 16:35:36,756 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,756 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80056/CPDR-FFPE-ID-66_seg1_2020-01-28_09-52-46/CPDR-FFPE-ID-66_seg1.skyd

11 May 2020 16:35:36,756 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-66_seg1_2020-01-28_09-52-46/CPDR-FFPE-ID-66_seg1.skyd

11 May 2020 16:35:36,765 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-74_seg1_2020-01-28_09-53-04.sky.zip; targetedms run ID 86709

11 May 2020 16:35:36,765 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,765 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80057/CPDR-FFPE-ID-74_seg1_2020-01-28_09-53-04.sky.zip

11 May 2020 16:35:36,765 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-74_seg1_2020-01-28_09-53-04.sky.zip

11 May 2020 16:35:36,771 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,771 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80057/CPDR-FFPE-ID-74_seg1_2020-01-28_09-53-04/CPDR-FFPE-ID-74_seg1.skyd

11 May 2020 16:35:36,771 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-74_seg1_2020-01-28_09-53-04/CPDR-FFPE-ID-74_seg1.skyd

11 May 2020 16:35:36,779 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-89_seg1_2020-01-28_09-53-49.sky.zip; targetedms run ID 86708

11 May 2020 16:35:36,780 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,780 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80059/CPDR-FFPE-ID-89_seg1_2020-01-28_09-53-49.sky.zip

11 May 2020 16:35:36,780 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-89_seg1_2020-01-28_09-53-49.sky.zip

11 May 2020 16:35:36,785 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,785 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80059/CPDR-FFPE-ID-89_seg1_2020-01-28_09-53-49/CPDR-FFPE-ID-89_seg1.skyd

11 May 2020 16:35:36,785 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-89_seg1_2020-01-28_09-53-49/CPDR-FFPE-ID-89_seg1.skyd

11 May 2020 16:35:36,794 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-728_seg1_2020-01-28_09-58-31.sky.zip; targetedms run ID 86707

11 May 2020 16:35:36,794 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,794 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80075/CPDR-FFPE-ID-728_seg1_2020-01-28_09-58-31.sky.zip

11 May 2020 16:35:36,794 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-728_seg1_2020-01-28_09-58-31.sky.zip

11 May 2020 16:35:36,800 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,800 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80075/CPDR-FFPE-ID-728_seg1_2020-01-28_09-58-31/CPDR-FFPE-ID-728_seg1.skyd

11 May 2020 16:35:36,800 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-728_seg1_2020-01-28_09-58-31/CPDR-FFPE-ID-728_seg1.skyd

11 May 2020 16:35:36,808 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-14_seg2_2020-01-28_10-01-45.sky.zip; targetedms run ID 86706

11 May 2020 16:35:36,809 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,809 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80082/CPDR-FFPE-ID-14_seg2_2020-01-28_10-01-45.sky.zip

11 May 2020 16:35:36,809 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-14_seg2_2020-01-28_10-01-45.sky.zip

11 May 2020 16:35:36,814 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,814 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80082/CPDR-FFPE-ID-14_seg2_2020-01-28_10-01-45/CPDR-FFPE-ID-14_seg2.skyd

11 May 2020 16:35:36,814 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-14_seg2_2020-01-28_10-01-45/CPDR-FFPE-ID-14_seg2.skyd

11 May 2020 16:35:36,823 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-74_seg2_2020-01-28_10-04-31.sky.zip; targetedms run ID 86705

11 May 2020 16:35:36,824 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,824 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80087/CPDR-FFPE-ID-74_seg2_2020-01-28_10-04-31/CPDR-FFPE-ID-74_seg2.skyd

11 May 2020 16:35:36,824 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-74_seg2_2020-01-28_10-04-31/CPDR-FFPE-ID-74_seg2.skyd

11 May 2020 16:35:36,829 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,829 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80087/CPDR-FFPE-ID-74_seg2_2020-01-28_10-04-31.sky.zip

11 May 2020 16:35:36,829 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-74_seg2_2020-01-28_10-04-31.sky.zip

11 May 2020 16:35:36,837 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-159_seg2_2020-01-28_10-08-47.sky.zip; targetedms run ID 86704

11 May 2020 16:35:36,838 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,838 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80098/CPDR-FFPE-ID-159_seg2_2020-01-28_10-08-47.sky.zip

11 May 2020 16:35:36,838 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-159_seg2_2020-01-28_10-08-47.sky.zip

11 May 2020 16:35:36,843 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,843 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80098/CPDR-FFPE-ID-159_seg2_2020-01-28_10-08-47/CPDR-FFPE-ID-159_seg2.skyd

11 May 2020 16:35:36,843 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-159_seg2_2020-01-28_10-08-47/CPDR-FFPE-ID-159_seg2.skyd

11 May 2020 16:35:36,852 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-362_seg2_2020-01-28_10-10-52.sky.zip; targetedms run ID 86703

11 May 2020 16:35:36,852 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,852 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80102/CPDR-FFPE-ID-362_seg2_2020-01-28_10-10-52.sky.zip

11 May 2020 16:35:36,852 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-362_seg2_2020-01-28_10-10-52.sky.zip

11 May 2020 16:35:36,858 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,858 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80102/CPDR-FFPE-ID-362_seg2_2020-01-28_10-10-52/CPDR-FFPE-ID-362_seg2.skyd

11 May 2020 16:35:36,858 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-362_seg2_2020-01-28_10-10-52/CPDR-FFPE-ID-362_seg2.skyd

11 May 2020 16:35:36,866 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-620_seg2_2020-01-28_10-16-03.sky.zip; targetedms run ID 86702

11 May 2020 16:35:36,866 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,867 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80105/CPDR-FFPE-ID-620_seg2_2020-01-28_10-16-03.sky.zip

11 May 2020 16:35:36,867 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-620_seg2_2020-01-28_10-16-03.sky.zip

11 May 2020 16:35:36,872 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,872 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80105/CPDR-FFPE-ID-620_seg2_2020-01-28_10-16-03/CPDR-FFPE-ID-620_seg2.skyd

11 May 2020 16:35:36,872 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-620_seg2_2020-01-28_10-16-03/CPDR-FFPE-ID-620_seg2.skyd

11 May 2020 16:35:36,880 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-393_2020-01-28_10-18-58.sky.zip; targetedms run ID 86700

11 May 2020 16:35:36,881 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,881 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80110/CPDR-FFPE-ID-393_2020-01-28_10-18-58.sky.zip

11 May 2020 16:35:36,881 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-393_2020-01-28_10-18-58.sky.zip

11 May 2020 16:35:36,887 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,887 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80110/CPDR-FFPE-ID-393_2020-01-28_10-18-58/CPDR-FFPE-ID-393.skyd

11 May 2020 16:35:36,887 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-393_2020-01-28_10-18-58/CPDR-FFPE-ID-393.skyd

11 May 2020 16:35:36,895 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-105_seg2_2020-01-28_10-07-01.sky.zip; targetedms run ID 86699

11 May 2020 16:35:36,896 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,896 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80095/CPDR-FFPE-ID-105_seg2_2020-01-28_10-07-01/CPDR-FFPE-ID-105_seg2.skyd

11 May 2020 16:35:36,897 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-105_seg2_2020-01-28_10-07-01/CPDR-FFPE-ID-105_seg2.skyd

11 May 2020 16:35:36,901 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,901 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80095/CPDR-FFPE-ID-105_seg2_2020-01-28_10-07-01.sky.zip

11 May 2020 16:35:36,902 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-105_seg2_2020-01-28_10-07-01.sky.zip

11 May 2020 16:35:36,910 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-728_seg2_2020-01-28_10-16-32.sky.zip; targetedms run ID 86698

11 May 2020 16:35:36,910 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,910 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80106/CPDR-FFPE-ID-728_seg2_2020-01-28_10-16-32.sky.zip

11 May 2020 16:35:36,910 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-728_seg2_2020-01-28_10-16-32.sky.zip

11 May 2020 16:35:36,916 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,916 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80106/CPDR-FFPE-ID-728_seg2_2020-01-28_10-16-32/CPDR-FFPE-ID-728_seg2.skyd

11 May 2020 16:35:36,916 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-728_seg2_2020-01-28_10-16-32/CPDR-FFPE-ID-728_seg2.skyd

11 May 2020 16:35:36,924 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-313_2020-01-28_10-20-11.sky.zip; targetedms run ID 86697

11 May 2020 16:35:36,925 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,925 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80112/CPDR-FFPE-ID-313_2020-01-28_10-20-11.sky.zip

11 May 2020 16:35:36,925 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-313_2020-01-28_10-20-11.sky.zip

11 May 2020 16:35:36,930 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,930 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80112/CPDR-FFPE-ID-313_2020-01-28_10-20-11/CPDR-FFPE-ID-313.skyd

11 May 2020 16:35:36,931 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-313_2020-01-28_10-20-11/CPDR-FFPE-ID-313.skyd

11 May 2020 16:35:36,939 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-214_2020-01-28_10-24-49.sky.zip; targetedms run ID 86696

11 May 2020 16:35:36,940 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,940 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80119/CPDR-FFPE-ID-214_2020-01-28_10-24-49/CPDR-FFPE-ID-214.skyd

11 May 2020 16:35:36,940 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-214_2020-01-28_10-24-49/CPDR-FFPE-ID-214.skyd

11 May 2020 16:35:36,945 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,945 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80119/CPDR-FFPE-ID-214_2020-01-28_10-24-49.sky.zip

11 May 2020 16:35:36,945 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-214_2020-01-28_10-24-49.sky.zip

11 May 2020 16:35:36,953 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-347_2020-01-28_10-32-58.sky.zip; targetedms run ID 86695

11 May 2020 16:35:36,954 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,954 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80137/CPDR-FFPE-ID-347_2020-01-28_10-32-58.sky.zip

11 May 2020 16:35:36,954 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-347_2020-01-28_10-32-58.sky.zip

11 May 2020 16:35:36,959 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,959 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80137/CPDR-FFPE-ID-347_2020-01-28_10-32-58/CPDR-FFPE-ID-347.skyd

11 May 2020 16:35:36,959 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-347_2020-01-28_10-32-58/CPDR-FFPE-ID-347.skyd

11 May 2020 16:35:36,968 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-411_2020-01-28_11-00-12.sky.zip; targetedms run ID 86694

11 May 2020 16:35:36,969 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,969 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80178/CPDR-FFPE-ID-411_2020-01-28_11-00-12/CPDR-FFPE-ID-411.skyd

11 May 2020 16:35:36,969 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-411_2020-01-28_11-00-12/CPDR-FFPE-ID-411.skyd

11 May 2020 16:35:36,974 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,974 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80178/CPDR-FFPE-ID-411_2020-01-28_11-00-12.sky.zip

11 May 2020 16:35:36,974 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-411_2020-01-28_11-00-12.sky.zip

11 May 2020 16:35:36,982 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-375_2020-01-28_11-00-52.sky.zip; targetedms run ID 86693

11 May 2020 16:35:36,983 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,983 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80179/CPDR-FFPE-ID-375_2020-01-28_11-00-52/CPDR-FFPE-ID-375.skyd

11 May 2020 16:35:36,984 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-375_2020-01-28_11-00-52/CPDR-FFPE-ID-375.skyd

11 May 2020 16:35:36,988 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,988 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80179/CPDR-FFPE-ID-375_2020-01-28_11-00-52.sky.zip

11 May 2020 16:35:36,989 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-375_2020-01-28_11-00-52.sky.zip

11 May 2020 16:35:36,997 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-83_2020-01-28_11-02-14.sky.zip; targetedms run ID 86692

11 May 2020 16:35:36,998 INFO : Updating dataFileUrl...

11 May 2020 16:35:36,998 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80181/CPDR-FFPE-ID-83_2020-01-28_11-02-14/CPDR-FFPE-ID-83.skyd

11 May 2020 16:35:36,998 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-83_2020-01-28_11-02-14/CPDR-FFPE-ID-83.skyd

11 May 2020 16:35:37,003 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,003 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80181/CPDR-FFPE-ID-83_2020-01-28_11-02-14.sky.zip

11 May 2020 16:35:37,003 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-83_2020-01-28_11-02-14.sky.zip

11 May 2020 16:35:37,011 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-345_2020-01-28_11-13-27.sky.zip; targetedms run ID 86691

11 May 2020 16:35:37,012 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,013 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80188/CPDR-FFPE-ID-345_2020-01-28_11-13-27/CPDR-FFPE-ID-345.skyd

11 May 2020 16:35:37,013 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-345_2020-01-28_11-13-27/CPDR-FFPE-ID-345.skyd

11 May 2020 16:35:37,017 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,017 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80188/CPDR-FFPE-ID-345_2020-01-28_11-13-27.sky.zip

11 May 2020 16:35:37,018 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-345_2020-01-28_11-13-27.sky.zip

11 May 2020 16:35:37,026 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-398_2020-01-28_10-35-37.sky.zip; targetedms run ID 86690

11 May 2020 16:35:37,026 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,026 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80141/CPDR-FFPE-ID-398_2020-01-28_10-35-37.sky.zip

11 May 2020 16:35:37,026 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-398_2020-01-28_10-35-37.sky.zip

11 May 2020 16:35:37,032 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,032 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80141/CPDR-FFPE-ID-398_2020-01-28_10-35-37/CPDR-FFPE-ID-398.skyd

11 May 2020 16:35:37,032 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-398_2020-01-28_10-35-37/CPDR-FFPE-ID-398.skyd

11 May 2020 16:35:37,040 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-320_2020-01-28_10-38-20.sky.zip; targetedms run ID 86689

11 May 2020 16:35:37,041 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,041 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80145/CPDR-FFPE-ID-320_2020-01-28_10-38-20.sky.zip

11 May 2020 16:35:37,041 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-320_2020-01-28_10-38-20.sky.zip

11 May 2020 16:35:37,046 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,046 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80145/CPDR-FFPE-ID-320_2020-01-28_10-38-20/CPDR-FFPE-ID-320.skyd

11 May 2020 16:35:37,047 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-320_2020-01-28_10-38-20/CPDR-FFPE-ID-320.skyd

11 May 2020 16:35:37,055 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-361_seg2_2020-01-28_10-10-22.sky.zip; targetedms run ID 86688

11 May 2020 16:35:37,055 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,055 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80101/CPDR-FFPE-ID-361_seg2_2020-01-28_10-10-22.sky.zip

11 May 2020 16:35:37,056 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-361_seg2_2020-01-28_10-10-22.sky.zip

11 May 2020 16:35:37,061 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,061 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80101/CPDR-FFPE-ID-361_seg2_2020-01-28_10-10-22/CPDR-FFPE-ID-361_seg2.skyd

11 May 2020 16:35:37,061 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-361_seg2_2020-01-28_10-10-22/CPDR-FFPE-ID-361_seg2.skyd

11 May 2020 16:35:37,069 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-745_seg2_2020-01-28_10-17-05.sky.zip; targetedms run ID 86687

11 May 2020 16:35:37,070 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,071 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80107/CPDR-FFPE-ID-745_seg2_2020-01-28_10-17-05/CPDR-FFPE-ID-745_seg2.skyd

11 May 2020 16:35:37,071 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-745_seg2_2020-01-28_10-17-05/CPDR-FFPE-ID-745_seg2.skyd

11 May 2020 16:35:37,075 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,075 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80107/CPDR-FFPE-ID-745_seg2_2020-01-28_10-17-05.sky.zip

11 May 2020 16:35:37,076 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-745_seg2_2020-01-28_10-17-05.sky.zip

11 May 2020 16:35:37,084 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-295_2020-01-28_10-21-29.sky.zip; targetedms run ID 86686

11 May 2020 16:35:37,084 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,084 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80114/CPDR-FFPE-ID-295_2020-01-28_10-21-29.sky.zip

11 May 2020 16:35:37,084 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-295_2020-01-28_10-21-29.sky.zip

11 May 2020 16:35:37,090 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,090 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80114/CPDR-FFPE-ID-295_2020-01-28_10-21-29/CPDR-FFPE-ID-295.skyd

11 May 2020 16:35:37,090 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-295_2020-01-28_10-21-29/CPDR-FFPE-ID-295.skyd

11 May 2020 16:35:37,098 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-267_2020-01-28_10-30-41.sky.zip; targetedms run ID 86685

11 May 2020 16:35:37,099 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,099 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80133/CPDR-FFPE-ID-267_2020-01-28_10-30-41.sky.zip

11 May 2020 16:35:37,099 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-267_2020-01-28_10-30-41.sky.zip

11 May 2020 16:35:37,104 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,104 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80133/CPDR-FFPE-ID-267_2020-01-28_10-30-41/CPDR-FFPE-ID-267.skyd

11 May 2020 16:35:37,104 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-267_2020-01-28_10-30-41/CPDR-FFPE-ID-267.skyd

11 May 2020 16:35:37,112 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-234_2020-01-28_10-34-56.sky.zip; targetedms run ID 86684

11 May 2020 16:35:37,114 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,114 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80140/CPDR-FFPE-ID-234_2020-01-28_10-34-56/CPDR-FFPE-ID-234.skyd

11 May 2020 16:35:37,114 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-234_2020-01-28_10-34-56/CPDR-FFPE-ID-234.skyd

11 May 2020 16:35:37,119 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,119 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80140/CPDR-FFPE-ID-234_2020-01-28_10-34-56.sky.zip

11 May 2020 16:35:37,119 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-234_2020-01-28_10-34-56.sky.zip

11 May 2020 16:35:37,127 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-260_2020-01-28_10-43-39.sky.zip; targetedms run ID 86683

11 May 2020 16:35:37,128 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,128 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80154/CPDR-FFPE-ID-260_2020-01-28_10-43-39/CPDR-FFPE-ID-260.skyd

11 May 2020 16:35:37,129 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-260_2020-01-28_10-43-39/CPDR-FFPE-ID-260.skyd

11 May 2020 16:35:37,133 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,133 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80154/CPDR-FFPE-ID-260_2020-01-28_10-43-39.sky.zip

11 May 2020 16:35:37,134 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-260_2020-01-28_10-43-39.sky.zip

11 May 2020 16:35:37,142 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-281_2020-01-28_10-44-16.sky.zip; targetedms run ID 86682

11 May 2020 16:35:37,143 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,143 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80155/CPDR-FFPE-ID-281_2020-01-28_10-44-16/CPDR-FFPE-ID-281.skyd

11 May 2020 16:35:37,143 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-281_2020-01-28_10-44-16/CPDR-FFPE-ID-281.skyd

11 May 2020 16:35:37,148 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,148 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80155/CPDR-FFPE-ID-281_2020-01-28_10-44-16.sky.zip

11 May 2020 16:35:37,148 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-281_2020-01-28_10-44-16.sky.zip

11 May 2020 16:35:37,156 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-288_2020-01-28_10-44-54.sky.zip; targetedms run ID 86681

11 May 2020 16:35:37,157 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,157 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80156/CPDR-FFPE-ID-288_2020-01-28_10-44-54/CPDR-FFPE-ID-288.skyd

11 May 2020 16:35:37,158 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-288_2020-01-28_10-44-54/CPDR-FFPE-ID-288.skyd

11 May 2020 16:35:37,162 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,162 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80156/CPDR-FFPE-ID-288_2020-01-28_10-44-54.sky.zip

11 May 2020 16:35:37,162 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-288_2020-01-28_10-44-54.sky.zip

11 May 2020 16:35:37,171 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-297_2020-01-28_10-45-29.sky.zip; targetedms run ID 86680

11 May 2020 16:35:37,171 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,171 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80157/CPDR-FFPE-ID-297_2020-01-28_10-45-29.sky.zip

11 May 2020 16:35:37,171 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-297_2020-01-28_10-45-29.sky.zip

11 May 2020 16:35:37,177 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,177 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80157/CPDR-FFPE-ID-297_2020-01-28_10-45-29/CPDR-FFPE-ID-297.skyd

11 May 2020 16:35:37,177 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-297_2020-01-28_10-45-29/CPDR-FFPE-ID-297.skyd

11 May 2020 16:35:37,185 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-203_2020-01-28_10-18-16.sky.zip; targetedms run ID 86679

11 May 2020 16:35:37,186 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,186 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80109/CPDR-FFPE-ID-203_2020-01-28_10-18-16.sky.zip

11 May 2020 16:35:37,186 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-203_2020-01-28_10-18-16.sky.zip

11 May 2020 16:35:37,191 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,191 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80109/CPDR-FFPE-ID-203_2020-01-28_10-18-16/CPDR-FFPE-ID-203.skyd

11 May 2020 16:35:37,191 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-203_2020-01-28_10-18-16/CPDR-FFPE-ID-203.skyd

11 May 2020 16:35:37,200 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-263_2020-01-28_10-25-28.sky.zip; targetedms run ID 86678

11 May 2020 16:35:37,200 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,200 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80120/CPDR-FFPE-ID-263_2020-01-28_10-25-28.sky.zip

11 May 2020 16:35:37,200 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-263_2020-01-28_10-25-28.sky.zip

11 May 2020 16:35:37,206 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,206 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80120/CPDR-FFPE-ID-263_2020-01-28_10-25-28/CPDR-FFPE-ID-263.skyd

11 May 2020 16:35:37,206 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-263_2020-01-28_10-25-28/CPDR-FFPE-ID-263.skyd

11 May 2020 16:35:37,214 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-282_2020-01-28_10-26-46.sky.zip; targetedms run ID 86677

11 May 2020 16:35:37,215 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,215 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80127/CPDR-FFPE-ID-282_2020-01-28_10-26-46/CPDR-FFPE-ID-282.skyd

11 May 2020 16:35:37,216 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-282_2020-01-28_10-26-46/CPDR-FFPE-ID-282.skyd

11 May 2020 16:35:37,220 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,220 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80127/CPDR-FFPE-ID-282_2020-01-28_10-26-46.sky.zip

11 May 2020 16:35:37,220 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-282_2020-01-28_10-26-46.sky.zip

11 May 2020 16:35:37,229 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-271_2020-01-28_10-31-13.sky.zip; targetedms run ID 86676

11 May 2020 16:35:37,230 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,230 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80134/CPDR-FFPE-ID-271_2020-01-28_10-31-13/CPDR-FFPE-ID-271.skyd

11 May 2020 16:35:37,230 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-271_2020-01-28_10-31-13/CPDR-FFPE-ID-271.skyd

11 May 2020 16:35:37,235 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,235 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80134/CPDR-FFPE-ID-271_2020-01-28_10-31-13.sky.zip

11 May 2020 16:35:37,235 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-271_2020-01-28_10-31-13.sky.zip

11 May 2020 16:35:37,243 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-307_2020-01-28_10-19-35.sky.zip; targetedms run ID 86675

11 May 2020 16:35:37,244 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,244 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80111/CPDR-FFPE-ID-307_2020-01-28_10-19-35/CPDR-FFPE-ID-307.skyd

11 May 2020 16:35:37,245 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-307_2020-01-28_10-19-35/CPDR-FFPE-ID-307.skyd

11 May 2020 16:35:37,249 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,249 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80111/CPDR-FFPE-ID-307_2020-01-28_10-19-35.sky.zip

11 May 2020 16:35:37,249 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-307_2020-01-28_10-19-35.sky.zip

11 May 2020 16:35:37,258 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-217_2020-01-28_10-20-52.sky.zip; targetedms run ID 86674

11 May 2020 16:35:37,258 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,258 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80113/CPDR-FFPE-ID-217_2020-01-28_10-20-52.sky.zip

11 May 2020 16:35:37,258 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-217_2020-01-28_10-20-52.sky.zip

11 May 2020 16:35:37,264 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,264 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80113/CPDR-FFPE-ID-217_2020-01-28_10-20-52/CPDR-FFPE-ID-217.skyd

11 May 2020 16:35:37,264 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-217_2020-01-28_10-20-52/CPDR-FFPE-ID-217.skyd

11 May 2020 16:35:37,272 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-207_2020-01-28_10-23-01.sky.zip; targetedms run ID 86673

11 May 2020 16:35:37,273 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,273 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80116/CPDR-FFPE-ID-207_2020-01-28_10-23-01/CPDR-FFPE-ID-207.skyd

11 May 2020 16:35:37,274 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-207_2020-01-28_10-23-01/CPDR-FFPE-ID-207.skyd

11 May 2020 16:35:37,278 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,278 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80116/CPDR-FFPE-ID-207_2020-01-28_10-23-01.sky.zip

11 May 2020 16:35:37,278 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-207_2020-01-28_10-23-01.sky.zip

11 May 2020 16:35:37,287 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-326_2020-01-28_10-22-09.sky.zip; targetedms run ID 86672

11 May 2020 16:35:37,288 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,288 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80115/CPDR-FFPE-ID-326_2020-01-28_10-22-09/CPDR-FFPE-ID-326.skyd

11 May 2020 16:35:37,288 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-326_2020-01-28_10-22-09/CPDR-FFPE-ID-326.skyd

11 May 2020 16:35:37,293 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,293 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch1_52_proteins/xar/experiments_and_runs.xar.exploded/Run80115/CPDR-FFPE-ID-326_2020-01-28_10-22-09.sky.zip

11 May 2020 16:35:37,293 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch1_52_proteins/@files/CPDR-FFPE-ID-326_2020-01-28_10-22-09.sky.zip

11 May 2020 16:35:37,301 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-992_2020-01-29_12-16-52.sky.zip; targetedms run ID 86938

11 May 2020 16:35:37,302 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,302 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80360/CPDR-FFPE-ID-992_2020-01-29_12-16-52/CPDR-FFPE-ID-992.skyd

11 May 2020 16:35:37,302 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-992_2020-01-29_12-16-52/CPDR-FFPE-ID-992.skyd

11 May 2020 16:35:37,307 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,307 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80360/CPDR-FFPE-ID-992_2020-01-29_12-16-52.sky.zip

11 May 2020 16:35:37,308 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-992_2020-01-29_12-16-52.sky.zip

11 May 2020 16:35:37,324 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-945_2020-01-29_12-16-12.sky.zip; targetedms run ID 86937

11 May 2020 16:35:37,325 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,325 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80357/CPDR-FFPE-ID-945_2020-01-29_12-16-12.sky.zip

11 May 2020 16:35:37,325 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-945_2020-01-29_12-16-12.sky.zip

11 May 2020 16:35:37,330 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,330 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80357/CPDR-FFPE-ID-945_2020-01-29_12-16-12/CPDR-FFPE-ID-945.skyd

11 May 2020 16:35:37,331 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-945_2020-01-29_12-16-12/CPDR-FFPE-ID-945.skyd

11 May 2020 16:35:37,339 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-990_2020-01-29_12-15-59.sky.zip; targetedms run ID 86936

11 May 2020 16:35:37,340 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,340 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80356/CPDR-FFPE-ID-990_2020-01-29_12-15-59/CPDR-FFPE-ID-990.skyd

11 May 2020 16:35:37,341 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-990_2020-01-29_12-15-59/CPDR-FFPE-ID-990.skyd

11 May 2020 16:35:37,345 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,346 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80356/CPDR-FFPE-ID-990_2020-01-29_12-15-59.sky.zip

11 May 2020 16:35:37,346 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-990_2020-01-29_12-15-59.sky.zip

11 May 2020 16:35:37,354 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-1113_2020-01-29_12-14-46.sky.zip; targetedms run ID 86935

11 May 2020 16:35:37,355 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,355 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80351/CPDR-FFPE-ID-1113_2020-01-29_12-14-46.sky.zip

11 May 2020 16:35:37,355 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1113_2020-01-29_12-14-46.sky.zip

11 May 2020 16:35:37,361 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,361 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80351/CPDR-FFPE-ID-1113_2020-01-29_12-14-46/CPDR-FFPE-ID-1113.skyd

11 May 2020 16:35:37,361 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1113_2020-01-29_12-14-46/CPDR-FFPE-ID-1113.skyd

11 May 2020 16:35:37,370 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-764_2020-01-28_15-04-01.sky.zip; targetedms run ID 86934

11 May 2020 16:35:37,370 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,370 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80312/CPDR-FFPE-ID-764_2020-01-28_15-04-01.sky.zip

11 May 2020 16:35:37,371 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-764_2020-01-28_15-04-01.sky.zip

11 May 2020 16:35:37,376 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,376 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80312/CPDR-FFPE-ID-764_2020-01-28_15-04-01/CPDR-FFPE-ID-764.skyd

11 May 2020 16:35:37,377 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-764_2020-01-28_15-04-01/CPDR-FFPE-ID-764.skyd

11 May 2020 16:35:37,385 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-1762_2020-01-29_12-32-55.sky.zip; targetedms run ID 86933

11 May 2020 16:35:37,386 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,387 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80409/CPDR-FFPE-ID-1762_2020-01-29_12-32-55/CPDR-FFPE-ID-1762.skyd

11 May 2020 16:35:37,387 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1762_2020-01-29_12-32-55/CPDR-FFPE-ID-1762.skyd

11 May 2020 16:35:37,392 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,392 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80409/CPDR-FFPE-ID-1762_2020-01-29_12-32-55.sky.zip

11 May 2020 16:35:37,392 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1762_2020-01-29_12-32-55.sky.zip

11 May 2020 16:35:37,400 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-1123_2020-01-29_12-25-21.sky.zip; targetedms run ID 86932

11 May 2020 16:35:37,400 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,401 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80395/CPDR-FFPE-ID-1123_2020-01-29_12-25-21.sky.zip

11 May 2020 16:35:37,401 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1123_2020-01-29_12-25-21.sky.zip

11 May 2020 16:35:37,406 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,406 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80395/CPDR-FFPE-ID-1123_2020-01-29_12-25-21/CPDR-FFPE-ID-1123.skyd

11 May 2020 16:35:37,406 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1123_2020-01-29_12-25-21/CPDR-FFPE-ID-1123.skyd

11 May 2020 16:35:37,414 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-768_2020-01-29_12-24-20.sky.zip; targetedms run ID 86931

11 May 2020 16:35:37,415 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,415 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80392/CPDR-FFPE-ID-768_2020-01-29_12-24-20.sky.zip

11 May 2020 16:35:37,415 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-768_2020-01-29_12-24-20.sky.zip

11 May 2020 16:35:37,421 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,421 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80392/CPDR-FFPE-ID-768_2020-01-29_12-24-20/CPDR-FFPE-ID-768.skyd

11 May 2020 16:35:37,421 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-768_2020-01-29_12-24-20/CPDR-FFPE-ID-768.skyd

11 May 2020 16:35:37,429 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-889_2020-01-29_12-23-55.sky.zip; targetedms run ID 86930

11 May 2020 16:35:37,430 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,430 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80390/CPDR-FFPE-ID-889_2020-01-29_12-23-55.sky.zip

11 May 2020 16:35:37,430 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-889_2020-01-29_12-23-55.sky.zip

11 May 2020 16:35:37,435 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,436 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80390/CPDR-FFPE-ID-889_2020-01-29_12-23-55/CPDR-FFPE-ID-889.skyd

11 May 2020 16:35:37,436 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-889_2020-01-29_12-23-55/CPDR-FFPE-ID-889.skyd

11 May 2020 16:35:37,444 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-703_2020-01-29_12-21-28.sky.zip; targetedms run ID 86929

11 May 2020 16:35:37,444 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,444 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80380/CPDR-FFPE-ID-703_2020-01-29_12-21-28.sky.zip

11 May 2020 16:35:37,445 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-703_2020-01-29_12-21-28.sky.zip

11 May 2020 16:35:37,450 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,450 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80380/CPDR-FFPE-ID-703_2020-01-29_12-21-28/CPDR-FFPE-ID-703.skyd

11 May 2020 16:35:37,450 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-703_2020-01-29_12-21-28/CPDR-FFPE-ID-703.skyd

11 May 2020 16:35:37,458 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-639_2020-01-29_12-21-18.sky.zip; targetedms run ID 86928

11 May 2020 16:35:37,459 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,459 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80379/CPDR-FFPE-ID-639_2020-01-29_12-21-18.sky.zip

11 May 2020 16:35:37,459 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-639_2020-01-29_12-21-18.sky.zip

11 May 2020 16:35:37,464 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,465 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80379/CPDR-FFPE-ID-639_2020-01-29_12-21-18/CPDR-FFPE-ID-639.skyd

11 May 2020 16:35:37,465 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-639_2020-01-29_12-21-18/CPDR-FFPE-ID-639.skyd

11 May 2020 16:35:37,473 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-935_2020-01-29_12-19-55.sky.zip; targetedms run ID 86927

11 May 2020 16:35:37,473 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,473 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80373/CPDR-FFPE-ID-935_2020-01-29_12-19-55.sky.zip

11 May 2020 16:35:37,473 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-935_2020-01-29_12-19-55.sky.zip

11 May 2020 16:35:37,479 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,479 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80373/CPDR-FFPE-ID-935_2020-01-29_12-19-55/CPDR-FFPE-ID-935.skyd

11 May 2020 16:35:37,479 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-935_2020-01-29_12-19-55/CPDR-FFPE-ID-935.skyd

11 May 2020 16:35:37,487 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-786_2020-01-29_12-18-30.sky.zip; targetedms run ID 86926

11 May 2020 16:35:37,488 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,488 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80367/CPDR-FFPE-ID-786_2020-01-29_12-18-30.sky.zip

11 May 2020 16:35:37,488 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-786_2020-01-29_12-18-30.sky.zip

11 May 2020 16:35:37,493 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,493 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80367/CPDR-FFPE-ID-786_2020-01-29_12-18-30/CPDR-FFPE-ID-786.skyd

11 May 2020 16:35:37,494 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-786_2020-01-29_12-18-30/CPDR-FFPE-ID-786.skyd

11 May 2020 16:35:37,502 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-856_2020-01-29_12-18-05.sky.zip; targetedms run ID 86925

11 May 2020 16:35:37,502 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,502 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80365/CPDR-FFPE-ID-856_2020-01-29_12-18-05.sky.zip

11 May 2020 16:35:37,502 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-856_2020-01-29_12-18-05.sky.zip

11 May 2020 16:35:37,508 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,508 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80365/CPDR-FFPE-ID-856_2020-01-29_12-18-05/CPDR-FFPE-ID-856.skyd

11 May 2020 16:35:37,508 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-856_2020-01-29_12-18-05/CPDR-FFPE-ID-856.skyd

11 May 2020 16:35:37,516 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-733_2020-01-29_12-17-07.sky.zip; targetedms run ID 86924

11 May 2020 16:35:37,517 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,517 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80361/CPDR-FFPE-ID-733_2020-01-29_12-17-07.sky.zip

11 May 2020 16:35:37,517 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-733_2020-01-29_12-17-07.sky.zip

11 May 2020 16:35:37,522 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,523 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80361/CPDR-FFPE-ID-733_2020-01-29_12-17-07/CPDR-FFPE-ID-733.skyd

11 May 2020 16:35:37,523 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-733_2020-01-29_12-17-07/CPDR-FFPE-ID-733.skyd

11 May 2020 16:35:37,531 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-845_2020-01-28_13-46-34.sky.zip; targetedms run ID 86923

11 May 2020 16:35:37,532 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,532 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80300/CPDR-FFPE-ID-845_2020-01-28_13-46-34/CPDR-FFPE-ID-845.skyd

11 May 2020 16:35:37,532 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-845_2020-01-28_13-46-34/CPDR-FFPE-ID-845.skyd

11 May 2020 16:35:37,537 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,537 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80300/CPDR-FFPE-ID-845_2020-01-28_13-46-34.sky.zip

11 May 2020 16:35:37,537 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-845_2020-01-28_13-46-34.sky.zip

11 May 2020 16:35:37,545 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-749_2020-01-28_13-47-31.sky.zip; targetedms run ID 86922

11 May 2020 16:35:37,546 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,547 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80304/CPDR-FFPE-ID-749_2020-01-28_13-47-31/CPDR-FFPE-ID-749.skyd

11 May 2020 16:35:37,547 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-749_2020-01-28_13-47-31/CPDR-FFPE-ID-749.skyd

11 May 2020 16:35:37,551 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,551 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80304/CPDR-FFPE-ID-749_2020-01-28_13-47-31.sky.zip

11 May 2020 16:35:37,552 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-749_2020-01-28_13-47-31.sky.zip

11 May 2020 16:35:37,560 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-629_2020-01-28_13-47-17.sky.zip; targetedms run ID 86921

11 May 2020 16:35:37,561 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,561 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80303/CPDR-FFPE-ID-629_2020-01-28_13-47-17/CPDR-FFPE-ID-629.skyd

11 May 2020 16:35:37,561 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-629_2020-01-28_13-47-17/CPDR-FFPE-ID-629.skyd

11 May 2020 16:35:37,566 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,566 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80303/CPDR-FFPE-ID-629_2020-01-28_13-47-17.sky.zip

11 May 2020 16:35:37,566 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-629_2020-01-28_13-47-17.sky.zip

11 May 2020 16:35:37,574 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-650_2020-01-28_13-46-22.sky.zip; targetedms run ID 86920

11 May 2020 16:35:37,575 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,575 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80299/CPDR-FFPE-ID-650_2020-01-28_13-46-22.sky.zip

11 May 2020 16:35:37,575 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-650_2020-01-28_13-46-22.sky.zip

11 May 2020 16:35:37,580 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,580 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80299/CPDR-FFPE-ID-650_2020-01-28_13-46-22/CPDR-FFPE-ID-650.skyd

11 May 2020 16:35:37,580 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-650_2020-01-28_13-46-22/CPDR-FFPE-ID-650.skyd

11 May 2020 16:35:37,589 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-738_2020-01-28_13-48-23.sky.zip; targetedms run ID 86919

11 May 2020 16:35:37,589 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,589 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80307/CPDR-FFPE-ID-738_2020-01-28_13-48-23.sky.zip

11 May 2020 16:35:37,589 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-738_2020-01-28_13-48-23.sky.zip

11 May 2020 16:35:37,595 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,595 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80307/CPDR-FFPE-ID-738_2020-01-28_13-48-23/CPDR-FFPE-ID-738.skyd

11 May 2020 16:35:37,595 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-738_2020-01-28_13-48-23/CPDR-FFPE-ID-738.skyd

11 May 2020 16:35:37,603 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-754_2020-01-28_13-46-09.sky.zip; targetedms run ID 86918

11 May 2020 16:35:37,604 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,604 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80298/CPDR-FFPE-ID-754_2020-01-28_13-46-09/CPDR-FFPE-ID-754.skyd

11 May 2020 16:35:37,605 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-754_2020-01-28_13-46-09/CPDR-FFPE-ID-754.skyd

11 May 2020 16:35:37,609 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,609 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80298/CPDR-FFPE-ID-754_2020-01-28_13-46-09.sky.zip

11 May 2020 16:35:37,609 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-754_2020-01-28_13-46-09.sky.zip

11 May 2020 16:35:37,617 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-586_2020-01-28_13-44-11.sky.zip; targetedms run ID 86917

11 May 2020 16:35:37,618 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,618 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80288/CPDR-FFPE-ID-586_2020-01-28_13-44-11.sky.zip

11 May 2020 16:35:37,618 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-586_2020-01-28_13-44-11.sky.zip

11 May 2020 16:35:37,624 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,624 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80288/CPDR-FFPE-ID-586_2020-01-28_13-44-11/CPDR-FFPE-ID-586.skyd

11 May 2020 16:35:37,624 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-586_2020-01-28_13-44-11/CPDR-FFPE-ID-586.skyd

11 May 2020 16:35:37,632 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-585_2020-01-28_13-46-48.sky.zip; targetedms run ID 86916

11 May 2020 16:35:37,633 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,633 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80301/CPDR-FFPE-ID-585_2020-01-28_13-46-48.sky.zip

11 May 2020 16:35:37,633 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-585_2020-01-28_13-46-48.sky.zip

11 May 2020 16:35:37,638 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,638 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80301/CPDR-FFPE-ID-585_2020-01-28_13-46-48/CPDR-FFPE-ID-585.skyd

11 May 2020 16:35:37,638 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-585_2020-01-28_13-46-48/CPDR-FFPE-ID-585.skyd

11 May 2020 16:35:37,646 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-635_2020-01-28_13-44-47.sky.zip; targetedms run ID 86915

11 May 2020 16:35:37,647 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,647 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80291/CPDR-FFPE-ID-635_2020-01-28_13-44-47.sky.zip

11 May 2020 16:35:37,647 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-635_2020-01-28_13-44-47.sky.zip

11 May 2020 16:35:37,652 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,653 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80291/CPDR-FFPE-ID-635_2020-01-28_13-44-47/CPDR-FFPE-ID-635.skyd

11 May 2020 16:35:37,653 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-635_2020-01-28_13-44-47/CPDR-FFPE-ID-635.skyd

11 May 2020 16:35:37,661 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-782_2020-01-28_13-44-24.sky.zip; targetedms run ID 86914

11 May 2020 16:35:37,661 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,661 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80289/CPDR-FFPE-ID-782_2020-01-28_13-44-24.sky.zip

11 May 2020 16:35:37,662 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-782_2020-01-28_13-44-24.sky.zip

11 May 2020 16:35:37,667 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,667 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80289/CPDR-FFPE-ID-782_2020-01-28_13-44-24/CPDR-FFPE-ID-782.skyd

11 May 2020 16:35:37,667 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-782_2020-01-28_13-44-24/CPDR-FFPE-ID-782.skyd

11 May 2020 16:35:37,675 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-670_2020-01-28_13-42-03.sky.zip; targetedms run ID 86913

11 May 2020 16:35:37,676 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,676 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80282/CPDR-FFPE-ID-670_2020-01-28_13-42-03.sky.zip

11 May 2020 16:35:37,676 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-670_2020-01-28_13-42-03.sky.zip

11 May 2020 16:35:37,681 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,682 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80282/CPDR-FFPE-ID-670_2020-01-28_13-42-03/CPDR-FFPE-ID-670.skyd

11 May 2020 16:35:37,682 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-670_2020-01-28_13-42-03/CPDR-FFPE-ID-670.skyd

11 May 2020 16:35:37,690 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-743_2020-01-28_13-41-48.sky.zip; targetedms run ID 86912

11 May 2020 16:35:37,690 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,690 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80281/CPDR-FFPE-ID-743_2020-01-28_13-41-48.sky.zip

11 May 2020 16:35:37,691 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-743_2020-01-28_13-41-48.sky.zip

11 May 2020 16:35:37,751 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,751 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80281/CPDR-FFPE-ID-743_2020-01-28_13-41-48/CPDR-FFPE-ID-743.skyd

11 May 2020 16:35:37,751 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-743_2020-01-28_13-41-48/CPDR-FFPE-ID-743.skyd

11 May 2020 16:35:37,760 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-493_2020-01-28_13-32-40.sky.zip; targetedms run ID 86911

11 May 2020 16:35:37,761 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,761 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80248/CPDR-FFPE-ID-493_2020-01-28_13-32-40.sky.zip

11 May 2020 16:35:37,761 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-493_2020-01-28_13-32-40.sky.zip

11 May 2020 16:35:37,767 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,768 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80248/CPDR-FFPE-ID-493_2020-01-28_13-32-40/CPDR-FFPE-ID-493.skyd

11 May 2020 16:35:37,768 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-493_2020-01-28_13-32-40/CPDR-FFPE-ID-493.skyd

11 May 2020 16:35:37,777 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-495_2020-01-28_13-32-29.sky.zip; targetedms run ID 86910

11 May 2020 16:35:37,777 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,778 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80247/CPDR-FFPE-ID-495_2020-01-28_13-32-29.sky.zip

11 May 2020 16:35:37,778 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-495_2020-01-28_13-32-29.sky.zip

11 May 2020 16:35:37,853 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,853 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80247/CPDR-FFPE-ID-495_2020-01-28_13-32-29/CPDR-FFPE-ID-495.skyd

11 May 2020 16:35:37,853 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-495_2020-01-28_13-32-29/CPDR-FFPE-ID-495.skyd

11 May 2020 16:35:37,863 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-473_2020-01-28_13-32-06.sky.zip; targetedms run ID 86909

11 May 2020 16:35:37,864 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,864 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80245/CPDR-FFPE-ID-473_2020-01-28_13-32-06/CPDR-FFPE-ID-473.skyd

11 May 2020 16:35:37,864 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-473_2020-01-28_13-32-06/CPDR-FFPE-ID-473.skyd

11 May 2020 16:35:37,869 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,869 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80245/CPDR-FFPE-ID-473_2020-01-28_13-32-06.sky.zip

11 May 2020 16:35:37,870 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-473_2020-01-28_13-32-06.sky.zip

11 May 2020 16:35:37,878 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-564_2020-01-28_13-31-19.sky.zip; targetedms run ID 86908

11 May 2020 16:35:37,880 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,880 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80241/CPDR-FFPE-ID-564_2020-01-28_13-31-19/CPDR-FFPE-ID-564.skyd

11 May 2020 16:35:37,880 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-564_2020-01-28_13-31-19/CPDR-FFPE-ID-564.skyd

11 May 2020 16:35:37,885 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,885 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80241/CPDR-FFPE-ID-564_2020-01-28_13-31-19.sky.zip

11 May 2020 16:35:37,885 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-564_2020-01-28_13-31-19.sky.zip

11 May 2020 16:35:37,894 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-614_2020-01-28_13-31-07.sky.zip; targetedms run ID 86907

11 May 2020 16:35:37,895 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,895 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80240/CPDR-FFPE-ID-614_2020-01-28_13-31-07.sky.zip

11 May 2020 16:35:37,895 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-614_2020-01-28_13-31-07.sky.zip

11 May 2020 16:35:37,948 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,948 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80240/CPDR-FFPE-ID-614_2020-01-28_13-31-07/CPDR-FFPE-ID-614.skyd

11 May 2020 16:35:37,948 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-614_2020-01-28_13-31-07/CPDR-FFPE-ID-614.skyd

11 May 2020 16:35:37,958 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-1267_2020-01-29_12-45-30.sky.zip; targetedms run ID 86906

11 May 2020 16:35:37,959 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,960 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80449/CPDR-FFPE-ID-1267_2020-01-29_12-45-30/CPDR-FFPE-ID-1267.skyd

11 May 2020 16:35:37,960 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1267_2020-01-29_12-45-30/CPDR-FFPE-ID-1267.skyd

11 May 2020 16:35:37,965 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,965 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80449/CPDR-FFPE-ID-1267_2020-01-29_12-45-30.sky.zip

11 May 2020 16:35:37,965 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1267_2020-01-29_12-45-30.sky.zip

11 May 2020 16:35:37,973 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-1313_2020-01-29_12-45-15.sky.zip; targetedms run ID 86905

11 May 2020 16:35:37,975 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,975 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80448/CPDR-FFPE-ID-1313_2020-01-29_12-45-15/CPDR-FFPE-ID-1313.skyd

11 May 2020 16:35:37,975 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1313_2020-01-29_12-45-15/CPDR-FFPE-ID-1313.skyd

11 May 2020 16:35:37,980 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,980 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80448/CPDR-FFPE-ID-1313_2020-01-29_12-45-15.sky.zip

11 May 2020 16:35:37,980 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1313_2020-01-29_12-45-15.sky.zip

11 May 2020 16:35:37,988 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-803_2020-01-29_12-39-23.sky.zip; targetedms run ID 86904

11 May 2020 16:35:37,990 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,990 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80434/CPDR-FFPE-ID-803_2020-01-29_12-39-23/CPDR-FFPE-ID-803.skyd

11 May 2020 16:35:37,990 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-803_2020-01-29_12-39-23/CPDR-FFPE-ID-803.skyd

11 May 2020 16:35:37,994 INFO : Updating dataFileUrl...

11 May 2020 16:35:37,995 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80434/CPDR-FFPE-ID-803_2020-01-29_12-39-23.sky.zip

11 May 2020 16:35:37,995 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-803_2020-01-29_12-39-23.sky.zip

11 May 2020 16:35:38,003 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-1402_2020-01-29_12-38-56.sky.zip; targetedms run ID 86903

11 May 2020 16:35:38,004 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,004 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80432/CPDR-FFPE-ID-1402_2020-01-29_12-38-56/CPDR-FFPE-ID-1402.skyd

11 May 2020 16:35:38,004 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1402_2020-01-29_12-38-56/CPDR-FFPE-ID-1402.skyd

11 May 2020 16:35:38,009 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,009 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80432/CPDR-FFPE-ID-1402_2020-01-29_12-38-56.sky.zip

11 May 2020 16:35:38,009 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1402_2020-01-29_12-38-56.sky.zip

11 May 2020 16:35:38,018 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-1255_2020-01-29_12-37-30.sky.zip; targetedms run ID 86902

11 May 2020 16:35:38,018 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,018 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80427/CPDR-FFPE-ID-1255_2020-01-29_12-37-30.sky.zip

11 May 2020 16:35:38,018 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1255_2020-01-29_12-37-30.sky.zip

11 May 2020 16:35:38,024 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,024 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80427/CPDR-FFPE-ID-1255_2020-01-29_12-37-30/CPDR-FFPE-ID-1255.skyd

11 May 2020 16:35:38,024 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1255_2020-01-29_12-37-30/CPDR-FFPE-ID-1255.skyd

11 May 2020 16:35:38,032 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-861_2020-01-29_12-35-18.sky.zip; targetedms run ID 86901

11 May 2020 16:35:38,033 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,033 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80419/CPDR-FFPE-ID-861_2020-01-29_12-35-18.sky.zip

11 May 2020 16:35:38,033 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-861_2020-01-29_12-35-18.sky.zip

11 May 2020 16:35:38,038 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,038 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80419/CPDR-FFPE-ID-861_2020-01-29_12-35-18/CPDR-FFPE-ID-861.skyd

11 May 2020 16:35:38,039 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-861_2020-01-29_12-35-18/CPDR-FFPE-ID-861.skyd

11 May 2020 16:35:38,047 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-1247_2020-01-29_12-33-19.sky.zip; targetedms run ID 86900

11 May 2020 16:35:38,047 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,047 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80410/CPDR-FFPE-ID-1247_2020-01-29_12-33-19.sky.zip

11 May 2020 16:35:38,048 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1247_2020-01-29_12-33-19.sky.zip

11 May 2020 16:35:38,053 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,053 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80410/CPDR-FFPE-ID-1247_2020-01-29_12-33-19/CPDR-FFPE-ID-1247.skyd

11 May 2020 16:35:38,053 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1247_2020-01-29_12-33-19/CPDR-FFPE-ID-1247.skyd

11 May 2020 16:35:38,061 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-1019_2020-01-29_12-31-52.sky.zip; targetedms run ID 86899

11 May 2020 16:35:38,062 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,062 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80406/CPDR-FFPE-ID-1019_2020-01-29_12-31-52.sky.zip

11 May 2020 16:35:38,062 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1019_2020-01-29_12-31-52.sky.zip

11 May 2020 16:35:38,068 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,068 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80406/CPDR-FFPE-ID-1019_2020-01-29_12-31-52/CPDR-FFPE-ID-1019.skyd

11 May 2020 16:35:38,068 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1019_2020-01-29_12-31-52/CPDR-FFPE-ID-1019.skyd

11 May 2020 16:35:38,076 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-1133_2020-01-29_12-23-35.sky.zip; targetedms run ID 86898

11 May 2020 16:35:38,077 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,077 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80389/CPDR-FFPE-ID-1133_2020-01-29_12-23-35.sky.zip

11 May 2020 16:35:38,077 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1133_2020-01-29_12-23-35.sky.zip

11 May 2020 16:35:38,082 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,082 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80389/CPDR-FFPE-ID-1133_2020-01-29_12-23-35/CPDR-FFPE-ID-1133.skyd

11 May 2020 16:35:38,082 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1133_2020-01-29_12-23-35/CPDR-FFPE-ID-1133.skyd

11 May 2020 16:35:38,091 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-746_2020-01-29_12-23-08.sky.zip; targetedms run ID 86897

11 May 2020 16:35:38,091 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,092 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80387/CPDR-FFPE-ID-746_2020-01-29_12-23-08.sky.zip

11 May 2020 16:35:38,092 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-746_2020-01-29_12-23-08.sky.zip

11 May 2020 16:35:38,097 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,097 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80387/CPDR-FFPE-ID-746_2020-01-29_12-23-08/CPDR-FFPE-ID-746.skyd

11 May 2020 16:35:38,097 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-746_2020-01-29_12-23-08/CPDR-FFPE-ID-746.skyd

11 May 2020 16:35:38,106 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-691_2020-01-29_12-20-41.sky.zip; targetedms run ID 86896

11 May 2020 16:35:38,106 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,106 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80376/CPDR-FFPE-ID-691_2020-01-29_12-20-41.sky.zip

11 May 2020 16:35:38,106 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-691_2020-01-29_12-20-41.sky.zip

11 May 2020 16:35:38,112 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,112 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80376/CPDR-FFPE-ID-691_2020-01-29_12-20-41/CPDR-FFPE-ID-691.skyd

11 May 2020 16:35:38,112 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-691_2020-01-29_12-20-41/CPDR-FFPE-ID-691.skyd

11 May 2020 16:35:38,131 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-545_2020-01-28_13-35-49.sky.zip; targetedms run ID 86895

11 May 2020 16:35:38,131 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,131 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80262/CPDR-FFPE-ID-545_2020-01-28_13-35-49.sky.zip

11 May 2020 16:35:38,131 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-545_2020-01-28_13-35-49.sky.zip

11 May 2020 16:35:38,137 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,137 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80262/CPDR-FFPE-ID-545_2020-01-28_13-35-49/CPDR-FFPE-ID-545.skyd

11 May 2020 16:35:38,137 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-545_2020-01-28_13-35-49/CPDR-FFPE-ID-545.skyd

11 May 2020 16:35:38,145 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-673_2020-01-28_13-35-25.sky.zip; targetedms run ID 86894

11 May 2020 16:35:38,147 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,147 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80260/CPDR-FFPE-ID-673_2020-01-28_13-35-25/CPDR-FFPE-ID-673.skyd

11 May 2020 16:35:38,147 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-673_2020-01-28_13-35-25/CPDR-FFPE-ID-673.skyd

11 May 2020 16:35:38,152 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,152 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80260/CPDR-FFPE-ID-673_2020-01-28_13-35-25.sky.zip

11 May 2020 16:35:38,152 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-673_2020-01-28_13-35-25.sky.zip

11 May 2020 16:35:38,160 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-571_2020-01-28_13-35-00.sky.zip; targetedms run ID 86893

11 May 2020 16:35:38,161 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,161 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80258/CPDR-FFPE-ID-571_2020-01-28_13-35-00/CPDR-FFPE-ID-571.skyd

11 May 2020 16:35:38,162 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-571_2020-01-28_13-35-00/CPDR-FFPE-ID-571.skyd

11 May 2020 16:35:38,166 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,166 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80258/CPDR-FFPE-ID-571_2020-01-28_13-35-00.sky.zip

11 May 2020 16:35:38,166 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-571_2020-01-28_13-35-00.sky.zip

11 May 2020 16:35:38,177 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-466_2020-01-28_13-26-11.sky.zip; targetedms run ID 86892

11 May 2020 16:35:38,178 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,178 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80227/CPDR-FFPE-ID-466_2020-01-28_13-26-11/CPDR-FFPE-ID-466.skyd

11 May 2020 16:35:38,178 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-466_2020-01-28_13-26-11/CPDR-FFPE-ID-466.skyd

11 May 2020 16:35:38,183 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,184 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80227/CPDR-FFPE-ID-466_2020-01-28_13-26-11.sky.zip

11 May 2020 16:35:38,184 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-466_2020-01-28_13-26-11.sky.zip

11 May 2020 16:35:38,193 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-633_2020-01-28_13-45-32.sky.zip; targetedms run ID 86891

11 May 2020 16:35:38,195 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,195 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80295/CPDR-FFPE-ID-633_2020-01-28_13-45-32/CPDR-FFPE-ID-633.skyd

11 May 2020 16:35:38,195 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-633_2020-01-28_13-45-32/CPDR-FFPE-ID-633.skyd

11 May 2020 16:35:38,200 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,200 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80295/CPDR-FFPE-ID-633_2020-01-28_13-45-32.sky.zip

11 May 2020 16:35:38,200 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-633_2020-01-28_13-45-32.sky.zip

11 May 2020 16:35:38,210 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-863_2020-01-28_13-45-21.sky.zip; targetedms run ID 86890

11 May 2020 16:35:38,212 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,212 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80294/CPDR-FFPE-ID-863_2020-01-28_13-45-21.sky.zip

11 May 2020 16:35:38,212 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-863_2020-01-28_13-45-21.sky.zip

11 May 2020 16:35:38,221 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,221 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80294/CPDR-FFPE-ID-863_2020-01-28_13-45-21/CPDR-FFPE-ID-863.skyd

11 May 2020 16:35:38,221 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-863_2020-01-28_13-45-21/CPDR-FFPE-ID-863.skyd

11 May 2020 16:35:38,231 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-810_2020-01-28_13-45-08.sky.zip; targetedms run ID 86889

11 May 2020 16:35:38,233 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,233 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80293/CPDR-FFPE-ID-810_2020-01-28_13-45-08/CPDR-FFPE-ID-810.skyd

11 May 2020 16:35:38,233 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-810_2020-01-28_13-45-08/CPDR-FFPE-ID-810.skyd

11 May 2020 16:35:38,238 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,239 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80293/CPDR-FFPE-ID-810_2020-01-28_13-45-08.sky.zip

11 May 2020 16:35:38,239 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-810_2020-01-28_13-45-08.sky.zip

11 May 2020 16:35:38,248 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-570_2020-01-28_13-41-06.sky.zip; targetedms run ID 86888

11 May 2020 16:35:38,249 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,249 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80278/CPDR-FFPE-ID-570_2020-01-28_13-41-06.sky.zip

11 May 2020 16:35:38,250 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-570_2020-01-28_13-41-06.sky.zip

11 May 2020 16:35:38,256 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,256 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80278/CPDR-FFPE-ID-570_2020-01-28_13-41-06/CPDR-FFPE-ID-570.skyd

11 May 2020 16:35:38,256 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-570_2020-01-28_13-41-06/CPDR-FFPE-ID-570.skyd

11 May 2020 16:35:38,264 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-550_2020-01-28_13-33-28.sky.zip; targetedms run ID 86887

11 May 2020 16:35:38,266 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,266 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80252/CPDR-FFPE-ID-550_2020-01-28_13-33-28/CPDR-FFPE-ID-550.skyd

11 May 2020 16:35:38,266 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-550_2020-01-28_13-33-28/CPDR-FFPE-ID-550.skyd

11 May 2020 16:35:38,271 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,271 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80252/CPDR-FFPE-ID-550_2020-01-28_13-33-28.sky.zip

11 May 2020 16:35:38,271 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-550_2020-01-28_13-33-28.sky.zip

11 May 2020 16:35:38,279 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-668_2020-01-28_13-33-16.sky.zip; targetedms run ID 86886

11 May 2020 16:35:38,280 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,280 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80251/CPDR-FFPE-ID-668_2020-01-28_13-33-16/CPDR-FFPE-ID-668.skyd

11 May 2020 16:35:38,281 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-668_2020-01-28_13-33-16/CPDR-FFPE-ID-668.skyd

11 May 2020 16:35:38,285 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,286 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80251/CPDR-FFPE-ID-668_2020-01-28_13-33-16.sky.zip

11 May 2020 16:35:38,286 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-668_2020-01-28_13-33-16.sky.zip

11 May 2020 16:35:38,294 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-468_2020-01-28_13-33-04.sky.zip; targetedms run ID 86885

11 May 2020 16:35:38,295 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,295 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80250/CPDR-FFPE-ID-468_2020-01-28_13-33-04/CPDR-FFPE-ID-468.skyd

11 May 2020 16:35:38,296 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-468_2020-01-28_13-33-04/CPDR-FFPE-ID-468.skyd

11 May 2020 16:35:38,300 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,301 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80250/CPDR-FFPE-ID-468_2020-01-28_13-33-04.sky.zip

11 May 2020 16:35:38,301 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-468_2020-01-28_13-33-04.sky.zip

11 May 2020 16:35:38,310 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-556_2020-01-28_13-31-31.sky.zip; targetedms run ID 86884

11 May 2020 16:35:38,311 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,311 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80242/CPDR-FFPE-ID-556_2020-01-28_13-31-31/CPDR-FFPE-ID-556.skyd

11 May 2020 16:35:38,311 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-556_2020-01-28_13-31-31/CPDR-FFPE-ID-556.skyd

11 May 2020 16:35:38,316 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,316 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80242/CPDR-FFPE-ID-556_2020-01-28_13-31-31.sky.zip

11 May 2020 16:35:38,316 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-556_2020-01-28_13-31-31.sky.zip

11 May 2020 16:35:38,325 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-168_2020-01-28_11-21-25.sky.zip; targetedms run ID 86883

11 May 2020 16:35:38,326 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,326 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80211/CPDR-FFPE-ID-168_2020-01-28_11-21-25/CPDR-FFPE-ID-168.skyd

11 May 2020 16:35:38,327 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-168_2020-01-28_11-21-25/CPDR-FFPE-ID-168.skyd

11 May 2020 16:35:38,331 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,332 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80211/CPDR-FFPE-ID-168_2020-01-28_11-21-25.sky.zip

11 May 2020 16:35:38,332 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-168_2020-01-28_11-21-25.sky.zip

11 May 2020 16:35:38,340 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-615_2020-01-28_13-43-38.sky.zip; targetedms run ID 86882

11 May 2020 16:35:38,341 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,341 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80286/CPDR-FFPE-ID-615_2020-01-28_13-43-38.sky.zip

11 May 2020 16:35:38,341 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-615_2020-01-28_13-43-38.sky.zip

11 May 2020 16:35:38,346 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,346 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80286/CPDR-FFPE-ID-615_2020-01-28_13-43-38/CPDR-FFPE-ID-615.skyd

11 May 2020 16:35:38,346 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-615_2020-01-28_13-43-38/CPDR-FFPE-ID-615.skyd

11 May 2020 16:35:38,355 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-566_2020-01-28_13-40-13.sky.zip; targetedms run ID 86881

11 May 2020 16:35:38,355 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,355 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80274/CPDR-FFPE-ID-566_2020-01-28_13-40-13.sky.zip

11 May 2020 16:35:38,355 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-566_2020-01-28_13-40-13.sky.zip

11 May 2020 16:35:38,361 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,361 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80274/CPDR-FFPE-ID-566_2020-01-28_13-40-13/CPDR-FFPE-ID-566.skyd

11 May 2020 16:35:38,361 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-566_2020-01-28_13-40-13/CPDR-FFPE-ID-566.skyd

11 May 2020 16:35:38,369 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-674_2020-01-28_13-37-10.sky.zip; targetedms run ID 86880

11 May 2020 16:35:38,370 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,371 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80269/CPDR-FFPE-ID-674_2020-01-28_13-37-10/CPDR-FFPE-ID-674.skyd

11 May 2020 16:35:38,371 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-674_2020-01-28_13-37-10/CPDR-FFPE-ID-674.skyd

11 May 2020 16:35:38,376 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,376 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80269/CPDR-FFPE-ID-674_2020-01-28_13-37-10.sky.zip

11 May 2020 16:35:38,376 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-674_2020-01-28_13-37-10.sky.zip

11 May 2020 16:35:38,384 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-711_2020-01-28_13-36-44.sky.zip; targetedms run ID 86879

11 May 2020 16:35:38,385 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,385 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80267/CPDR-FFPE-ID-711_2020-01-28_13-36-44/CPDR-FFPE-ID-711.skyd

11 May 2020 16:35:38,385 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-711_2020-01-28_13-36-44/CPDR-FFPE-ID-711.skyd

11 May 2020 16:35:38,390 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,390 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80267/CPDR-FFPE-ID-711_2020-01-28_13-36-44.sky.zip

11 May 2020 16:35:38,391 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-711_2020-01-28_13-36-44.sky.zip

11 May 2020 16:35:38,399 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-504_2020-01-28_13-34-11.sky.zip; targetedms run ID 86878

11 May 2020 16:35:38,400 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,401 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80255/CPDR-FFPE-ID-504_2020-01-28_13-34-11/CPDR-FFPE-ID-504.skyd

11 May 2020 16:35:38,401 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-504_2020-01-28_13-34-11/CPDR-FFPE-ID-504.skyd

11 May 2020 16:35:38,406 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,406 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80255/CPDR-FFPE-ID-504_2020-01-28_13-34-11.sky.zip

11 May 2020 16:35:38,406 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-504_2020-01-28_13-34-11.sky.zip

11 May 2020 16:35:38,415 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-537_2020-01-28_13-33-56.sky.zip; targetedms run ID 86877

11 May 2020 16:35:38,415 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,415 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80254/CPDR-FFPE-ID-537_2020-01-28_13-33-56.sky.zip

11 May 2020 16:35:38,416 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-537_2020-01-28_13-33-56.sky.zip

11 May 2020 16:35:38,421 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,421 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80254/CPDR-FFPE-ID-537_2020-01-28_13-33-56/CPDR-FFPE-ID-537.skyd

11 May 2020 16:35:38,421 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-537_2020-01-28_13-33-56/CPDR-FFPE-ID-537.skyd

11 May 2020 16:35:38,430 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-563_2020-01-28_13-33-43.sky.zip; targetedms run ID 86876

11 May 2020 16:35:38,431 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,431 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80253/CPDR-FFPE-ID-563_2020-01-28_13-33-43/CPDR-FFPE-ID-563.skyd

11 May 2020 16:35:38,431 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-563_2020-01-28_13-33-43/CPDR-FFPE-ID-563.skyd

11 May 2020 16:35:38,436 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,436 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80253/CPDR-FFPE-ID-563_2020-01-28_13-33-43.sky.zip

11 May 2020 16:35:38,436 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-563_2020-01-28_13-33-43.sky.zip

11 May 2020 16:35:38,444 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-490_2020-01-28_13-32-52.sky.zip; targetedms run ID 86875

11 May 2020 16:35:38,445 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,445 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80249/CPDR-FFPE-ID-490_2020-01-28_13-32-52.sky.zip

11 May 2020 16:35:38,445 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-490_2020-01-28_13-32-52.sky.zip

11 May 2020 16:35:38,450 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,450 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80249/CPDR-FFPE-ID-490_2020-01-28_13-32-52/CPDR-FFPE-ID-490.skyd

11 May 2020 16:35:38,451 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-490_2020-01-28_13-32-52/CPDR-FFPE-ID-490.skyd

11 May 2020 16:35:38,459 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-554_2020-01-28_13-31-43.sky.zip; targetedms run ID 86874

11 May 2020 16:35:38,460 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,460 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80243/CPDR-FFPE-ID-554_2020-01-28_13-31-43/CPDR-FFPE-ID-554.skyd

11 May 2020 16:35:38,460 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-554_2020-01-28_13-31-43/CPDR-FFPE-ID-554.skyd

11 May 2020 16:35:38,465 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,465 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80243/CPDR-FFPE-ID-554_2020-01-28_13-31-43.sky.zip

11 May 2020 16:35:38,465 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-554_2020-01-28_13-31-43.sky.zip

11 May 2020 16:35:38,473 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-628_2020-01-28_13-30-49.sky.zip; targetedms run ID 86873

11 May 2020 16:35:38,474 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,474 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80238/CPDR-FFPE-ID-628_2020-01-28_13-30-49.sky.zip

11 May 2020 16:35:38,474 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-628_2020-01-28_13-30-49.sky.zip

11 May 2020 16:35:38,480 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,480 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80238/CPDR-FFPE-ID-628_2020-01-28_13-30-49/CPDR-FFPE-ID-628.skyd

11 May 2020 16:35:38,480 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-628_2020-01-28_13-30-49/CPDR-FFPE-ID-628.skyd

11 May 2020 16:35:38,506 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-642_2020-01-28_13-30-06.sky.zip; targetedms run ID 86872

11 May 2020 16:35:38,508 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,508 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80235/CPDR-FFPE-ID-642_2020-01-28_13-30-06/CPDR-FFPE-ID-642.skyd

11 May 2020 16:35:38,508 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-642_2020-01-28_13-30-06/CPDR-FFPE-ID-642.skyd

11 May 2020 16:35:38,513 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,513 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80235/CPDR-FFPE-ID-642_2020-01-28_13-30-06.sky.zip

11 May 2020 16:35:38,514 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-642_2020-01-28_13-30-06.sky.zip

11 May 2020 16:35:38,523 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-406_2020-01-28_11-22-02.sky.zip; targetedms run ID 86871

11 May 2020 16:35:38,524 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,525 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80213/CPDR-FFPE-ID-406_2020-01-28_11-22-02/CPDR-FFPE-ID-406.skyd

11 May 2020 16:35:38,525 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-406_2020-01-28_11-22-02/CPDR-FFPE-ID-406.skyd

11 May 2020 16:35:38,530 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,530 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80213/CPDR-FFPE-ID-406_2020-01-28_11-22-02.sky.zip

11 May 2020 16:35:38,530 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-406_2020-01-28_11-22-02.sky.zip

11 May 2020 16:35:38,540 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-463_2020-01-28_11-20-24.sky.zip; targetedms run ID 86870

11 May 2020 16:35:38,540 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,540 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80207/CPDR-FFPE-ID-463_2020-01-28_11-20-24.sky.zip

11 May 2020 16:35:38,540 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-463_2020-01-28_11-20-24.sky.zip

11 May 2020 16:35:38,546 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,546 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80207/CPDR-FFPE-ID-463_2020-01-28_11-20-24/CPDR-FFPE-ID-463.skyd

11 May 2020 16:35:38,546 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-463_2020-01-28_11-20-24/CPDR-FFPE-ID-463.skyd

11 May 2020 16:35:38,555 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-590_2020-01-28_13-45-57.sky.zip; targetedms run ID 86869

11 May 2020 16:35:38,556 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,556 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80297/CPDR-FFPE-ID-590_2020-01-28_13-45-57.sky.zip

11 May 2020 16:35:38,556 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-590_2020-01-28_13-45-57.sky.zip

11 May 2020 16:35:38,562 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,562 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80297/CPDR-FFPE-ID-590_2020-01-28_13-45-57/CPDR-FFPE-ID-590.skyd

11 May 2020 16:35:38,562 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-590_2020-01-28_13-45-57/CPDR-FFPE-ID-590.skyd

11 May 2020 16:35:38,571 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-755_2020-01-28_13-44-57.sky.zip; targetedms run ID 86868

11 May 2020 16:35:38,571 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,572 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80292/CPDR-FFPE-ID-755_2020-01-28_13-44-57.sky.zip

11 May 2020 16:35:38,572 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-755_2020-01-28_13-44-57.sky.zip

11 May 2020 16:35:38,577 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,578 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80292/CPDR-FFPE-ID-755_2020-01-28_13-44-57/CPDR-FFPE-ID-755.skyd

11 May 2020 16:35:38,578 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-755_2020-01-28_13-44-57/CPDR-FFPE-ID-755.skyd

11 May 2020 16:35:38,587 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-606_2020-01-28_13-44-35.sky.zip; targetedms run ID 86867

11 May 2020 16:35:38,587 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,587 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80290/CPDR-FFPE-ID-606_2020-01-28_13-44-35.sky.zip

11 May 2020 16:35:38,587 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-606_2020-01-28_13-44-35.sky.zip

11 May 2020 16:35:38,593 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,593 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80290/CPDR-FFPE-ID-606_2020-01-28_13-44-35/CPDR-FFPE-ID-606.skyd

11 May 2020 16:35:38,593 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-606_2020-01-28_13-44-35/CPDR-FFPE-ID-606.skyd

11 May 2020 16:35:38,601 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-701_2020-01-28_13-39-56.sky.zip; targetedms run ID 86866

11 May 2020 16:35:38,602 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,602 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80273/CPDR-FFPE-ID-701_2020-01-28_13-39-56.sky.zip

11 May 2020 16:35:38,602 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-701_2020-01-28_13-39-56.sky.zip

11 May 2020 16:35:38,608 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,608 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80273/CPDR-FFPE-ID-701_2020-01-28_13-39-56/CPDR-FFPE-ID-701.skyd

11 May 2020 16:35:38,608 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-701_2020-01-28_13-39-56/CPDR-FFPE-ID-701.skyd

11 May 2020 16:35:38,616 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-505_2020-01-28_13-39-54.sky.zip; targetedms run ID 86865

11 May 2020 16:35:38,617 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,617 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80272/CPDR-FFPE-ID-505_2020-01-28_13-39-54.sky.zip

11 May 2020 16:35:38,617 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-505_2020-01-28_13-39-54.sky.zip

11 May 2020 16:35:38,622 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,622 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80272/CPDR-FFPE-ID-505_2020-01-28_13-39-54/CPDR-FFPE-ID-505.skyd

11 May 2020 16:35:38,623 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-505_2020-01-28_13-39-54/CPDR-FFPE-ID-505.skyd

11 May 2020 16:35:38,631 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-437_2020-01-28_13-29-18.sky.zip; targetedms run ID 86864

11 May 2020 16:35:38,632 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,632 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80234/CPDR-FFPE-ID-437_2020-01-28_13-29-18/CPDR-FFPE-ID-437.skyd

11 May 2020 16:35:38,632 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-437_2020-01-28_13-29-18/CPDR-FFPE-ID-437.skyd

11 May 2020 16:35:38,637 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,637 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80234/CPDR-FFPE-ID-437_2020-01-28_13-29-18.sky.zip

11 May 2020 16:35:38,637 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-437_2020-01-28_13-29-18.sky.zip

11 May 2020 16:35:38,646 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-465_2020-01-28_13-26-20.sky.zip; targetedms run ID 86863

11 May 2020 16:35:38,647 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,647 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80228/CPDR-FFPE-ID-465_2020-01-28_13-26-20/CPDR-FFPE-ID-465.skyd

11 May 2020 16:35:38,647 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-465_2020-01-28_13-26-20/CPDR-FFPE-ID-465.skyd

11 May 2020 16:35:38,652 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,652 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80228/CPDR-FFPE-ID-465_2020-01-28_13-26-20.sky.zip

11 May 2020 16:35:38,652 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-465_2020-01-28_13-26-20.sky.zip

11 May 2020 16:35:38,661 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-458_2020-01-28_13-25-52.sky.zip; targetedms run ID 86862

11 May 2020 16:35:38,662 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,662 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80225/CPDR-FFPE-ID-458_2020-01-28_13-25-52/CPDR-FFPE-ID-458.skyd

11 May 2020 16:35:38,662 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-458_2020-01-28_13-25-52/CPDR-FFPE-ID-458.skyd

11 May 2020 16:35:38,681 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,681 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80225/CPDR-FFPE-ID-458_2020-01-28_13-25-52.sky.zip

11 May 2020 16:35:38,681 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-458_2020-01-28_13-25-52.sky.zip

11 May 2020 16:35:38,689 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-441_2020-01-28_13-24-33.sky.zip; targetedms run ID 86861

11 May 2020 16:35:38,691 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,691 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80222/CPDR-FFPE-ID-441_2020-01-28_13-24-33/CPDR-FFPE-ID-441.skyd

11 May 2020 16:35:38,691 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-441_2020-01-28_13-24-33/CPDR-FFPE-ID-441.skyd

11 May 2020 16:35:38,696 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,696 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80222/CPDR-FFPE-ID-441_2020-01-28_13-24-33.sky.zip

11 May 2020 16:35:38,696 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-441_2020-01-28_13-24-33.sky.zip

11 May 2020 16:35:38,705 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-446_2020-01-28_13-24-11.sky.zip; targetedms run ID 86860

11 May 2020 16:35:38,706 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,706 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80221/CPDR-FFPE-ID-446_2020-01-28_13-24-11/CPDR-FFPE-ID-446.skyd

11 May 2020 16:35:38,706 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-446_2020-01-28_13-24-11/CPDR-FFPE-ID-446.skyd

11 May 2020 16:35:38,711 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,711 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80221/CPDR-FFPE-ID-446_2020-01-28_13-24-11.sky.zip

11 May 2020 16:35:38,712 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-446_2020-01-28_13-24-11.sky.zip

11 May 2020 16:35:38,720 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-414_2020-01-28_11-22-32.sky.zip; targetedms run ID 86859

11 May 2020 16:35:38,721 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,721 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80215/CPDR-FFPE-ID-414_2020-01-28_11-22-32.sky.zip

11 May 2020 16:35:38,721 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-414_2020-01-28_11-22-32.sky.zip

11 May 2020 16:35:38,727 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,727 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80215/CPDR-FFPE-ID-414_2020-01-28_11-22-32/CPDR-FFPE-ID-414.skyd

11 May 2020 16:35:38,727 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-414_2020-01-28_11-22-32/CPDR-FFPE-ID-414.skyd

11 May 2020 16:35:38,736 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-312_2020-01-28_11-22-19.sky.zip; targetedms run ID 86858

11 May 2020 16:35:38,737 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,737 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80214/CPDR-FFPE-ID-312_2020-01-28_11-22-19/CPDR-FFPE-ID-312.skyd

11 May 2020 16:35:38,737 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-312_2020-01-28_11-22-19/CPDR-FFPE-ID-312.skyd

11 May 2020 16:35:38,742 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,742 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80214/CPDR-FFPE-ID-312_2020-01-28_11-22-19.sky.zip

11 May 2020 16:35:38,742 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-312_2020-01-28_11-22-19.sky.zip

11 May 2020 16:35:38,751 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-448_2020-01-28_11-21-42.sky.zip; targetedms run ID 86857

11 May 2020 16:35:38,752 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,752 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80212/CPDR-FFPE-ID-448_2020-01-28_11-21-42/CPDR-FFPE-ID-448.skyd

11 May 2020 16:35:38,753 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-448_2020-01-28_11-21-42/CPDR-FFPE-ID-448.skyd

11 May 2020 16:35:38,757 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,757 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80212/CPDR-FFPE-ID-448_2020-01-28_11-21-42.sky.zip

11 May 2020 16:35:38,758 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-448_2020-01-28_11-21-42.sky.zip

11 May 2020 16:35:38,766 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-194_2020-01-28_11-20-10.sky.zip; targetedms run ID 86856

11 May 2020 16:35:38,767 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,767 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80206/CPDR-FFPE-ID-194_2020-01-28_11-20-10/CPDR-FFPE-ID-194.skyd

11 May 2020 16:35:38,767 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-194_2020-01-28_11-20-10/CPDR-FFPE-ID-194.skyd

11 May 2020 16:35:38,772 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,772 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80206/CPDR-FFPE-ID-194_2020-01-28_11-20-10.sky.zip

11 May 2020 16:35:38,772 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-194_2020-01-28_11-20-10.sky.zip

11 May 2020 16:35:38,780 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-205_2020-01-28_11-19-13.sky.zip; targetedms run ID 86855

11 May 2020 16:35:38,781 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,782 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80202/CPDR-FFPE-ID-205_2020-01-28_11-19-13/CPDR-FFPE-ID-205.skyd

11 May 2020 16:35:38,782 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-205_2020-01-28_11-19-13/CPDR-FFPE-ID-205.skyd

11 May 2020 16:35:38,786 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,787 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80202/CPDR-FFPE-ID-205_2020-01-28_11-19-13.sky.zip

11 May 2020 16:35:38,787 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-205_2020-01-28_11-19-13.sky.zip

11 May 2020 16:35:38,795 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-687_2020-01-28_13-36-59.sky.zip; targetedms run ID 86854

11 May 2020 16:35:38,796 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,796 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80268/CPDR-FFPE-ID-687_2020-01-28_13-36-59/CPDR-FFPE-ID-687.skyd

11 May 2020 16:35:38,796 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-687_2020-01-28_13-36-59/CPDR-FFPE-ID-687.skyd

11 May 2020 16:35:38,801 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,801 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80268/CPDR-FFPE-ID-687_2020-01-28_13-36-59.sky.zip

11 May 2020 16:35:38,801 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-687_2020-01-28_13-36-59.sky.zip

11 May 2020 16:35:38,809 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-521_2020-01-28_13-35-12.sky.zip; targetedms run ID 86853

11 May 2020 16:35:38,811 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,811 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80259/CPDR-FFPE-ID-521_2020-01-28_13-35-12/CPDR-FFPE-ID-521.skyd

11 May 2020 16:35:38,811 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-521_2020-01-28_13-35-12/CPDR-FFPE-ID-521.skyd

11 May 2020 16:35:38,815 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,816 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80259/CPDR-FFPE-ID-521_2020-01-28_13-35-12.sky.zip

11 May 2020 16:35:38,816 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-521_2020-01-28_13-35-12.sky.zip

11 May 2020 16:35:38,824 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-528_2020-01-28_13-34-46.sky.zip; targetedms run ID 86852

11 May 2020 16:35:38,825 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,825 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80257/CPDR-FFPE-ID-528_2020-01-28_13-34-46.sky.zip

11 May 2020 16:35:38,825 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-528_2020-01-28_13-34-46.sky.zip

11 May 2020 16:35:38,830 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,830 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80257/CPDR-FFPE-ID-528_2020-01-28_13-34-46/CPDR-FFPE-ID-528.skyd

11 May 2020 16:35:38,831 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-528_2020-01-28_13-34-46/CPDR-FFPE-ID-528.skyd

11 May 2020 16:35:38,839 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-507_2020-01-28_13-34-25.sky.zip; targetedms run ID 86851

11 May 2020 16:35:38,839 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,839 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80256/CPDR-FFPE-ID-507_2020-01-28_13-34-25.sky.zip

11 May 2020 16:35:38,840 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-507_2020-01-28_13-34-25.sky.zip

11 May 2020 16:35:38,845 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,845 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80256/CPDR-FFPE-ID-507_2020-01-28_13-34-25/CPDR-FFPE-ID-507.skyd

11 May 2020 16:35:38,845 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-507_2020-01-28_13-34-25/CPDR-FFPE-ID-507.skyd

11 May 2020 16:35:38,853 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-431_2020-01-28_13-32-18.sky.zip; targetedms run ID 86850

11 May 2020 16:35:38,854 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,854 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80246/CPDR-FFPE-ID-431_2020-01-28_13-32-18.sky.zip

11 May 2020 16:35:38,854 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-431_2020-01-28_13-32-18.sky.zip

11 May 2020 16:35:38,859 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,860 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80246/CPDR-FFPE-ID-431_2020-01-28_13-32-18/CPDR-FFPE-ID-431.skyd

11 May 2020 16:35:38,860 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-431_2020-01-28_13-32-18/CPDR-FFPE-ID-431.skyd

11 May 2020 16:35:38,868 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-450_2020-01-28_13-30-19.sky.zip; targetedms run ID 86849

11 May 2020 16:35:38,869 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,869 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80236/CPDR-FFPE-ID-450_2020-01-28_13-30-19/CPDR-FFPE-ID-450.skyd

11 May 2020 16:35:38,869 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-450_2020-01-28_13-30-19/CPDR-FFPE-ID-450.skyd

11 May 2020 16:35:38,874 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,874 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80236/CPDR-FFPE-ID-450_2020-01-28_13-30-19.sky.zip

11 May 2020 16:35:38,874 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-450_2020-01-28_13-30-19.sky.zip

11 May 2020 16:35:38,882 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-453_2020-01-28_13-26-47.sky.zip; targetedms run ID 86848

11 May 2020 16:35:38,883 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,884 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80230/CPDR-FFPE-ID-453_2020-01-28_13-26-47/CPDR-FFPE-ID-453.skyd

11 May 2020 16:35:38,884 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-453_2020-01-28_13-26-47/CPDR-FFPE-ID-453.skyd

11 May 2020 16:35:38,888 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,889 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80230/CPDR-FFPE-ID-453_2020-01-28_13-26-47.sky.zip

11 May 2020 16:35:38,889 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-453_2020-01-28_13-26-47.sky.zip

11 May 2020 16:35:38,897 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-502_2020-01-28_13-25-12.sky.zip; targetedms run ID 86847

11 May 2020 16:35:38,897 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,897 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80224/CPDR-FFPE-ID-502_2020-01-28_13-25-12.sky.zip

11 May 2020 16:35:38,898 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-502_2020-01-28_13-25-12.sky.zip

11 May 2020 16:35:38,903 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,903 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80224/CPDR-FFPE-ID-502_2020-01-28_13-25-12/CPDR-FFPE-ID-502.skyd

11 May 2020 16:35:38,903 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-502_2020-01-28_13-25-12/CPDR-FFPE-ID-502.skyd

11 May 2020 16:35:38,911 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-377_2020-01-28_11-17-56.sky.zip; targetedms run ID 86846

11 May 2020 16:35:38,912 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,913 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80197/CPDR-FFPE-ID-377_2020-01-28_11-17-56/CPDR-FFPE-ID-377.skyd

11 May 2020 16:35:38,913 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-377_2020-01-28_11-17-56/CPDR-FFPE-ID-377.skyd

11 May 2020 16:35:38,917 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,918 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80197/CPDR-FFPE-ID-377_2020-01-28_11-17-56.sky.zip

11 May 2020 16:35:38,918 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-377_2020-01-28_11-17-56.sky.zip

11 May 2020 16:35:38,926 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-415_2020-01-28_11-17-17.sky.zip; targetedms run ID 86845

11 May 2020 16:35:38,926 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,926 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80194/CPDR-FFPE-ID-415_2020-01-28_11-17-17.sky.zip

11 May 2020 16:35:38,927 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-415_2020-01-28_11-17-17.sky.zip

11 May 2020 16:35:38,932 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,932 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80194/CPDR-FFPE-ID-415_2020-01-28_11-17-17/CPDR-FFPE-ID-415.skyd

11 May 2020 16:35:38,932 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-415_2020-01-28_11-17-17/CPDR-FFPE-ID-415.skyd

11 May 2020 16:35:38,956 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-383_2020-01-28_11-16-12.sky.zip; targetedms run ID 86844

11 May 2020 16:35:38,957 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,957 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80190/CPDR-FFPE-ID-383_2020-01-28_11-16-12.sky.zip

11 May 2020 16:35:38,957 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-383_2020-01-28_11-16-12.sky.zip

11 May 2020 16:35:38,963 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,963 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80190/CPDR-FFPE-ID-383_2020-01-28_11-16-12/CPDR-FFPE-ID-383.skyd

11 May 2020 16:35:38,963 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-383_2020-01-28_11-16-12/CPDR-FFPE-ID-383.skyd

11 May 2020 16:35:38,973 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-501_2020-01-28_13-35-36.sky.zip; targetedms run ID 86843

11 May 2020 16:35:38,974 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,974 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80261/CPDR-FFPE-ID-501_2020-01-28_13-35-36/CPDR-FFPE-ID-501.skyd

11 May 2020 16:35:38,974 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-501_2020-01-28_13-35-36/CPDR-FFPE-ID-501.skyd

11 May 2020 16:35:38,979 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,980 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80261/CPDR-FFPE-ID-501_2020-01-28_13-35-36.sky.zip

11 May 2020 16:35:38,980 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-501_2020-01-28_13-35-36.sky.zip

11 May 2020 16:35:38,989 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-513_2020-01-28_13-31-54.sky.zip; targetedms run ID 86842

11 May 2020 16:35:38,990 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,990 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80244/CPDR-FFPE-ID-513_2020-01-28_13-31-54/CPDR-FFPE-ID-513.skyd

11 May 2020 16:35:38,990 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-513_2020-01-28_13-31-54/CPDR-FFPE-ID-513.skyd

11 May 2020 16:35:38,995 INFO : Updating dataFileUrl...

11 May 2020 16:35:38,995 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80244/CPDR-FFPE-ID-513_2020-01-28_13-31-54.sky.zip

11 May 2020 16:35:38,995 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-513_2020-01-28_13-31-54.sky.zip

11 May 2020 16:35:39,004 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-443_2020-01-28_13-30-36.sky.zip; targetedms run ID 86841

11 May 2020 16:35:39,005 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,005 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80237/CPDR-FFPE-ID-443_2020-01-28_13-30-36/CPDR-FFPE-ID-443.skyd

11 May 2020 16:35:39,005 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-443_2020-01-28_13-30-36/CPDR-FFPE-ID-443.skyd

11 May 2020 16:35:39,010 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,011 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80237/CPDR-FFPE-ID-443_2020-01-28_13-30-36.sky.zip

11 May 2020 16:35:39,011 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-443_2020-01-28_13-30-36.sky.zip

11 May 2020 16:35:39,019 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-395_2020-01-28_13-27-01.sky.zip; targetedms run ID 86840

11 May 2020 16:35:39,020 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,020 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80232/CPDR-FFPE-ID-395_2020-01-28_13-27-01.sky.zip

11 May 2020 16:35:39,020 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-395_2020-01-28_13-27-01.sky.zip

11 May 2020 16:35:39,025 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,026 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80232/CPDR-FFPE-ID-395_2020-01-28_13-27-01/CPDR-FFPE-ID-395.skyd

11 May 2020 16:35:39,026 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-395_2020-01-28_13-27-01/CPDR-FFPE-ID-395.skyd

11 May 2020 16:35:39,034 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-640_2020-01-28_13-26-33.sky.zip; targetedms run ID 86839

11 May 2020 16:35:39,035 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,035 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80229/CPDR-FFPE-ID-640_2020-01-28_13-26-33/CPDR-FFPE-ID-640.skyd

11 May 2020 16:35:39,035 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-640_2020-01-28_13-26-33/CPDR-FFPE-ID-640.skyd

11 May 2020 16:35:39,040 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,040 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80229/CPDR-FFPE-ID-640_2020-01-28_13-26-33.sky.zip

11 May 2020 16:35:39,040 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-640_2020-01-28_13-26-33.sky.zip

11 May 2020 16:35:39,049 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-471_2020-01-28_13-26-01.sky.zip; targetedms run ID 86838

11 May 2020 16:35:39,050 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,050 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80226/CPDR-FFPE-ID-471_2020-01-28_13-26-01/CPDR-FFPE-ID-471.skyd

11 May 2020 16:35:39,050 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-471_2020-01-28_13-26-01/CPDR-FFPE-ID-471.skyd

11 May 2020 16:35:39,055 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,055 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80226/CPDR-FFPE-ID-471_2020-01-28_13-26-01.sky.zip

11 May 2020 16:35:39,055 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-471_2020-01-28_13-26-01.sky.zip

11 May 2020 16:35:39,063 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-643_2020-01-28_13-24-59.sky.zip; targetedms run ID 86837

11 May 2020 16:35:39,064 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,064 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80223/CPDR-FFPE-ID-643_2020-01-28_13-24-59.sky.zip

11 May 2020 16:35:39,064 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-643_2020-01-28_13-24-59.sky.zip

11 May 2020 16:35:39,070 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,070 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80223/CPDR-FFPE-ID-643_2020-01-28_13-24-59/CPDR-FFPE-ID-643.skyd

11 May 2020 16:35:39,070 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-643_2020-01-28_13-24-59/CPDR-FFPE-ID-643.skyd

11 May 2020 16:35:39,078 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-540_2020-01-28_13-23-57.sky.zip; targetedms run ID 86836

11 May 2020 16:35:39,079 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,079 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80220/CPDR-FFPE-ID-540_2020-01-28_13-23-57/CPDR-FFPE-ID-540.skyd

11 May 2020 16:35:39,080 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-540_2020-01-28_13-23-57/CPDR-FFPE-ID-540.skyd

11 May 2020 16:35:39,084 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,084 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80220/CPDR-FFPE-ID-540_2020-01-28_13-23-57.sky.zip

11 May 2020 16:35:39,085 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-540_2020-01-28_13-23-57.sky.zip

11 May 2020 16:35:39,093 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-616_2020-01-28_13-30-58.sky.zip; targetedms run ID 86835

11 May 2020 16:35:39,093 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,094 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80239/CPDR-FFPE-ID-616_2020-01-28_13-30-58.sky.zip

11 May 2020 16:35:39,094 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-616_2020-01-28_13-30-58.sky.zip

11 May 2020 16:35:39,099 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,099 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80239/CPDR-FFPE-ID-616_2020-01-28_13-30-58/CPDR-FFPE-ID-616.skyd

11 May 2020 16:35:39,099 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-616_2020-01-28_13-30-58/CPDR-FFPE-ID-616.skyd

11 May 2020 16:35:39,108 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-438_2020-01-28_13-27-12.sky.zip; targetedms run ID 86834

11 May 2020 16:35:39,109 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,109 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80233/CPDR-FFPE-ID-438_2020-01-28_13-27-12/CPDR-FFPE-ID-438.skyd

11 May 2020 16:35:39,109 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-438_2020-01-28_13-27-12/CPDR-FFPE-ID-438.skyd

11 May 2020 16:35:39,114 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,114 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80233/CPDR-FFPE-ID-438_2020-01-28_13-27-12.sky.zip

11 May 2020 16:35:39,114 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-438_2020-01-28_13-27-12.sky.zip

11 May 2020 16:35:39,122 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-439_2020-01-28_13-09-32.sky.zip; targetedms run ID 86833

11 May 2020 16:35:39,123 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,124 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80218/CPDR-FFPE-ID-439_2020-01-28_13-09-32/CPDR-FFPE-ID-439.skyd

11 May 2020 16:35:39,124 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-439_2020-01-28_13-09-32/CPDR-FFPE-ID-439.skyd

11 May 2020 16:35:39,128 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,129 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80218/CPDR-FFPE-ID-439_2020-01-28_13-09-32.sky.zip

11 May 2020 16:35:39,129 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-439_2020-01-28_13-09-32.sky.zip

11 May 2020 16:35:39,137 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-492_2020-01-28_11-21-09.sky.zip; targetedms run ID 86832

11 May 2020 16:35:39,138 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,138 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80210/CPDR-FFPE-ID-492_2020-01-28_11-21-09/CPDR-FFPE-ID-492.skyd

11 May 2020 16:35:39,138 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-492_2020-01-28_11-21-09/CPDR-FFPE-ID-492.skyd

11 May 2020 16:35:39,143 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,143 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80210/CPDR-FFPE-ID-492_2020-01-28_11-21-09.sky.zip

11 May 2020 16:35:39,143 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-492_2020-01-28_11-21-09.sky.zip

11 May 2020 16:35:39,152 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-506_2020-01-28_11-20-37.sky.zip; targetedms run ID 86831

11 May 2020 16:35:39,153 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,153 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80208/CPDR-FFPE-ID-506_2020-01-28_11-20-37/CPDR-FFPE-ID-506.skyd

11 May 2020 16:35:39,153 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-506_2020-01-28_11-20-37/CPDR-FFPE-ID-506.skyd

11 May 2020 16:35:39,158 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,158 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80208/CPDR-FFPE-ID-506_2020-01-28_11-20-37.sky.zip

11 May 2020 16:35:39,158 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-506_2020-01-28_11-20-37.sky.zip

11 May 2020 16:35:39,166 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-433_2020-01-28_11-19-00.sky.zip; targetedms run ID 86830

11 May 2020 16:35:39,167 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,168 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80201/CPDR-FFPE-ID-433_2020-01-28_11-19-00/CPDR-FFPE-ID-433.skyd

11 May 2020 16:35:39,168 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-433_2020-01-28_11-19-00/CPDR-FFPE-ID-433.skyd

11 May 2020 16:35:39,172 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,173 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80201/CPDR-FFPE-ID-433_2020-01-28_11-19-00.sky.zip

11 May 2020 16:35:39,173 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-433_2020-01-28_11-19-00.sky.zip

11 May 2020 16:35:39,181 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-418_2020-01-28_11-19-57.sky.zip; targetedms run ID 86829

11 May 2020 16:35:39,182 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,182 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80205/CPDR-FFPE-ID-418_2020-01-28_11-19-57/CPDR-FFPE-ID-418.skyd

11 May 2020 16:35:39,182 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-418_2020-01-28_11-19-57/CPDR-FFPE-ID-418.skyd

11 May 2020 16:35:39,187 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,187 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80205/CPDR-FFPE-ID-418_2020-01-28_11-19-57.sky.zip

11 May 2020 16:35:39,187 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-418_2020-01-28_11-19-57.sky.zip

11 May 2020 16:35:39,196 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-523_2020-01-28_11-19-42.sky.zip; targetedms run ID 86828

11 May 2020 16:35:39,197 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,197 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80204/CPDR-FFPE-ID-523_2020-01-28_11-19-42/CPDR-FFPE-ID-523.skyd

11 May 2020 16:35:39,197 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-523_2020-01-28_11-19-42/CPDR-FFPE-ID-523.skyd

11 May 2020 16:35:39,202 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,202 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80204/CPDR-FFPE-ID-523_2020-01-28_11-19-42.sky.zip

11 May 2020 16:35:39,202 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-523_2020-01-28_11-19-42.sky.zip

11 May 2020 16:35:39,210 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-417_2020-01-28_11-19-26.sky.zip; targetedms run ID 86827

11 May 2020 16:35:39,211 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,212 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80203/CPDR-FFPE-ID-417_2020-01-28_11-19-26/CPDR-FFPE-ID-417.skyd

11 May 2020 16:35:39,212 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-417_2020-01-28_11-19-26/CPDR-FFPE-ID-417.skyd

11 May 2020 16:35:39,216 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,217 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80203/CPDR-FFPE-ID-417_2020-01-28_11-19-26.sky.zip

11 May 2020 16:35:39,217 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-417_2020-01-28_11-19-26.sky.zip

11 May 2020 16:35:39,225 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-535_2020-01-28_11-15-57.sky.zip; targetedms run ID 86826

11 May 2020 16:35:39,226 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,226 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80189/CPDR-FFPE-ID-535_2020-01-28_11-15-57/CPDR-FFPE-ID-535.skyd

11 May 2020 16:35:39,226 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-535_2020-01-28_11-15-57/CPDR-FFPE-ID-535.skyd

11 May 2020 16:35:39,231 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,231 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80189/CPDR-FFPE-ID-535_2020-01-28_11-15-57.sky.zip

11 May 2020 16:35:39,231 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-535_2020-01-28_11-15-57.sky.zip

11 May 2020 16:35:39,240 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-413_2020-01-28_11-22-44.sky.zip; targetedms run ID 86825

11 May 2020 16:35:39,241 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,241 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80216/CPDR-FFPE-ID-413_2020-01-28_11-22-44/CPDR-FFPE-ID-413.skyd

11 May 2020 16:35:39,241 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-413_2020-01-28_11-22-44/CPDR-FFPE-ID-413.skyd

11 May 2020 16:35:39,246 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,246 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80216/CPDR-FFPE-ID-413_2020-01-28_11-22-44.sky.zip

11 May 2020 16:35:39,246 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-413_2020-01-28_11-22-44.sky.zip

11 May 2020 16:35:39,255 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-412_2020-01-28_11-18-44.sky.zip; targetedms run ID 86824

11 May 2020 16:35:39,256 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,256 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80200/CPDR-FFPE-ID-412_2020-01-28_11-18-44/CPDR-FFPE-ID-412.skyd

11 May 2020 16:35:39,256 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-412_2020-01-28_11-18-44/CPDR-FFPE-ID-412.skyd

11 May 2020 16:35:39,261 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,261 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80200/CPDR-FFPE-ID-412_2020-01-28_11-18-44.sky.zip

11 May 2020 16:35:39,261 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-412_2020-01-28_11-18-44.sky.zip

11 May 2020 16:35:39,269 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-391_2020-01-28_11-18-13.sky.zip; targetedms run ID 86823

11 May 2020 16:35:39,270 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,270 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80198/CPDR-FFPE-ID-391_2020-01-28_11-18-13.sky.zip

11 May 2020 16:35:39,270 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-391_2020-01-28_11-18-13.sky.zip

11 May 2020 16:35:39,275 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,276 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80198/CPDR-FFPE-ID-391_2020-01-28_11-18-13/CPDR-FFPE-ID-391.skyd

11 May 2020 16:35:39,276 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-391_2020-01-28_11-18-13/CPDR-FFPE-ID-391.skyd

11 May 2020 16:35:39,284 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-610_2020-01-28_13-42-33.sky.zip; targetedms run ID 86822

11 May 2020 16:35:39,284 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,285 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80284/CPDR-FFPE-ID-610_2020-01-28_13-42-33.sky.zip

11 May 2020 16:35:39,285 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-610_2020-01-28_13-42-33.sky.zip

11 May 2020 16:35:39,290 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,290 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80284/CPDR-FFPE-ID-610_2020-01-28_13-42-33/CPDR-FFPE-ID-610.skyd

11 May 2020 16:35:39,290 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-610_2020-01-28_13-42-33/CPDR-FFPE-ID-610.skyd

11 May 2020 16:35:39,299 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-631_2020-01-28_13-41-19.sky.zip; targetedms run ID 86821

11 May 2020 16:35:39,300 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,300 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80279/CPDR-FFPE-ID-631_2020-01-28_13-41-19/CPDR-FFPE-ID-631.skyd

11 May 2020 16:35:39,300 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-631_2020-01-28_13-41-19/CPDR-FFPE-ID-631.skyd

11 May 2020 16:35:39,305 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,305 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80279/CPDR-FFPE-ID-631_2020-01-28_13-41-19.sky.zip

11 May 2020 16:35:39,305 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-631_2020-01-28_13-41-19.sky.zip

11 May 2020 16:35:39,314 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-541_2020-01-28_13-37-38.sky.zip; targetedms run ID 86820

11 May 2020 16:35:39,315 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,315 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80271/CPDR-FFPE-ID-541_2020-01-28_13-37-38/CPDR-FFPE-ID-541.skyd

11 May 2020 16:35:39,315 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-541_2020-01-28_13-37-38/CPDR-FFPE-ID-541.skyd

11 May 2020 16:35:39,320 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,320 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80271/CPDR-FFPE-ID-541_2020-01-28_13-37-38.sky.zip

11 May 2020 16:35:39,320 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-541_2020-01-28_13-37-38.sky.zip

11 May 2020 16:35:39,328 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-627_2020-01-28_13-37-23.sky.zip; targetedms run ID 86819

11 May 2020 16:35:39,329 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,329 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80270/CPDR-FFPE-ID-627_2020-01-28_13-37-23.sky.zip

11 May 2020 16:35:39,329 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-627_2020-01-28_13-37-23.sky.zip

11 May 2020 16:35:39,334 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,335 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80270/CPDR-FFPE-ID-627_2020-01-28_13-37-23/CPDR-FFPE-ID-627.skyd

11 May 2020 16:35:39,335 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-627_2020-01-28_13-37-23/CPDR-FFPE-ID-627.skyd

11 May 2020 16:35:39,343 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-532_2020-01-28_13-36-13.sky.zip; targetedms run ID 86818

11 May 2020 16:35:39,343 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,344 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80264/CPDR-FFPE-ID-532_2020-01-28_13-36-13.sky.zip

11 May 2020 16:35:39,344 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-532_2020-01-28_13-36-13.sky.zip

11 May 2020 16:35:39,349 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,349 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80264/CPDR-FFPE-ID-532_2020-01-28_13-36-13/CPDR-FFPE-ID-532.skyd

11 May 2020 16:35:39,349 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-532_2020-01-28_13-36-13/CPDR-FFPE-ID-532.skyd

11 May 2020 16:35:39,358 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-379_2020-01-28_11-17-40.sky.zip; targetedms run ID 86817

11 May 2020 16:35:39,359 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,359 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80196/CPDR-FFPE-ID-379_2020-01-28_11-17-40/CPDR-FFPE-ID-379.skyd

11 May 2020 16:35:39,359 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-379_2020-01-28_11-17-40/CPDR-FFPE-ID-379.skyd

11 May 2020 16:35:39,364 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,364 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80196/CPDR-FFPE-ID-379_2020-01-28_11-17-40.sky.zip

11 May 2020 16:35:39,364 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-379_2020-01-28_11-17-40.sky.zip

11 May 2020 16:35:39,372 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-402_2020-01-28_11-17-27.sky.zip; targetedms run ID 86816

11 May 2020 16:35:39,373 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,374 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80195/CPDR-FFPE-ID-402_2020-01-28_11-17-27/CPDR-FFPE-ID-402.skyd

11 May 2020 16:35:39,374 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-402_2020-01-28_11-17-27/CPDR-FFPE-ID-402.skyd

11 May 2020 16:35:39,378 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,379 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80195/CPDR-FFPE-ID-402_2020-01-28_11-17-27.sky.zip

11 May 2020 16:35:39,379 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-402_2020-01-28_11-17-27.sky.zip

11 May 2020 16:35:39,387 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-1193_2020-01-29_12-44-32.sky.zip; targetedms run ID 87037

11 May 2020 16:35:39,388 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,388 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80445/CPDR-FFPE-ID-1193_2020-01-29_12-44-32/CPDR-FFPE-ID-1193.skyd

11 May 2020 16:35:39,388 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1193_2020-01-29_12-44-32/CPDR-FFPE-ID-1193.skyd

11 May 2020 16:35:39,393 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,393 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80445/CPDR-FFPE-ID-1193_2020-01-29_12-44-32.sky.zip

11 May 2020 16:35:39,393 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1193_2020-01-29_12-44-32.sky.zip

11 May 2020 16:35:39,402 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-859_2020-01-29_12-41-32.sky.zip; targetedms run ID 87036

11 May 2020 16:35:39,402 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,402 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80443/CPDR-FFPE-ID-859_2020-01-29_12-41-32.sky.zip

11 May 2020 16:35:39,402 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-859_2020-01-29_12-41-32.sky.zip

11 May 2020 16:35:39,408 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,408 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80443/CPDR-FFPE-ID-859_2020-01-29_12-41-32/CPDR-FFPE-ID-859.skyd

11 May 2020 16:35:39,408 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-859_2020-01-29_12-41-32/CPDR-FFPE-ID-859.skyd

11 May 2020 16:35:39,416 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-1250_2020-01-29_12-41-18.sky.zip; targetedms run ID 87035

11 May 2020 16:35:39,417 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,418 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80442/CPDR-FFPE-ID-1250_2020-01-29_12-41-18/CPDR-FFPE-ID-1250.skyd

11 May 2020 16:35:39,418 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1250_2020-01-29_12-41-18/CPDR-FFPE-ID-1250.skyd

11 May 2020 16:35:39,422 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,422 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80442/CPDR-FFPE-ID-1250_2020-01-29_12-41-18.sky.zip

11 May 2020 16:35:39,423 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1250_2020-01-29_12-41-18.sky.zip

11 May 2020 16:35:39,431 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-1376_2020-01-29_14-56-40.sky.zip; targetedms run ID 87034

11 May 2020 16:35:39,432 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,432 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80477/CPDR-FFPE-ID-1376_2020-01-29_14-56-40/CPDR-FFPE-ID-1376.skyd

11 May 2020 16:35:39,432 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1376_2020-01-29_14-56-40/CPDR-FFPE-ID-1376.skyd

11 May 2020 16:35:39,437 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,437 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80477/CPDR-FFPE-ID-1376_2020-01-29_14-56-40.sky.zip

11 May 2020 16:35:39,437 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1376_2020-01-29_14-56-40.sky.zip

11 May 2020 16:35:39,495 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-1689_2020-01-29_12-40-48.sky.zip; targetedms run ID 87033

11 May 2020 16:35:39,496 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,496 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80440/CPDR-FFPE-ID-1689_2020-01-29_12-40-48/CPDR-FFPE-ID-1689.skyd

11 May 2020 16:35:39,496 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1689_2020-01-29_12-40-48/CPDR-FFPE-ID-1689.skyd

11 May 2020 16:35:39,501 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,502 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80440/CPDR-FFPE-ID-1689_2020-01-29_12-40-48.sky.zip

11 May 2020 16:35:39,502 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1689_2020-01-29_12-40-48.sky.zip

11 May 2020 16:35:39,511 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-636_2020-01-28_13-43-56.sky.zip; targetedms run ID 87032

11 May 2020 16:35:39,512 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,512 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80287/CPDR-FFPE-ID-636_2020-01-28_13-43-56/CPDR-FFPE-ID-636.skyd

11 May 2020 16:35:39,512 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-636_2020-01-28_13-43-56/CPDR-FFPE-ID-636.skyd

11 May 2020 16:35:39,517 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,518 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80287/CPDR-FFPE-ID-636_2020-01-28_13-43-56.sky.zip

11 May 2020 16:35:39,518 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-636_2020-01-28_13-43-56.sky.zip

11 May 2020 16:35:39,527 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-779_2020-01-28_13-41-34.sky.zip; targetedms run ID 87031

11 May 2020 16:35:39,527 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,527 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80280/CPDR-FFPE-ID-779_2020-01-28_13-41-34.sky.zip

11 May 2020 16:35:39,527 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-779_2020-01-28_13-41-34.sky.zip

11 May 2020 16:35:39,533 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,534 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80280/CPDR-FFPE-ID-779_2020-01-28_13-41-34/CPDR-FFPE-ID-779.skyd

11 May 2020 16:35:39,534 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-779_2020-01-28_13-41-34/CPDR-FFPE-ID-779.skyd

11 May 2020 16:35:39,542 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-850_2020-01-29_12-24-07.sky.zip; targetedms run ID 87030

11 May 2020 16:35:39,543 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,543 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80391/CPDR-FFPE-ID-850_2020-01-29_12-24-07.sky.zip

11 May 2020 16:35:39,543 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-850_2020-01-29_12-24-07.sky.zip

11 May 2020 16:35:39,548 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,549 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80391/CPDR-FFPE-ID-850_2020-01-29_12-24-07/CPDR-FFPE-ID-850.skyd

11 May 2020 16:35:39,549 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-850_2020-01-29_12-24-07/CPDR-FFPE-ID-850.skyd

11 May 2020 16:35:39,557 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-613_2020-01-28_13-47-05.sky.zip; targetedms run ID 87029

11 May 2020 16:35:39,558 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,558 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80302/CPDR-FFPE-ID-613_2020-01-28_13-47-05/CPDR-FFPE-ID-613.skyd

11 May 2020 16:35:39,558 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-613_2020-01-28_13-47-05/CPDR-FFPE-ID-613.skyd

11 May 2020 16:35:39,563 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,563 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80302/CPDR-FFPE-ID-613_2020-01-28_13-47-05.sky.zip

11 May 2020 16:35:39,563 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-613_2020-01-28_13-47-05.sky.zip

11 May 2020 16:35:39,572 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-623_2020-01-28_13-43-21.sky.zip; targetedms run ID 87028

11 May 2020 16:35:39,573 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,573 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80285/CPDR-FFPE-ID-623_2020-01-28_13-43-21/CPDR-FFPE-ID-623.skyd

11 May 2020 16:35:39,573 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-623_2020-01-28_13-43-21/CPDR-FFPE-ID-623.skyd

11 May 2020 16:35:39,578 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,578 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80285/CPDR-FFPE-ID-623_2020-01-28_13-43-21.sky.zip

11 May 2020 16:35:39,578 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-623_2020-01-28_13-43-21.sky.zip

11 May 2020 16:35:39,586 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-607_2020-01-28_13-42-17.sky.zip; targetedms run ID 87027

11 May 2020 16:35:39,588 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,588 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80283/CPDR-FFPE-ID-607_2020-01-28_13-42-17/CPDR-FFPE-ID-607.skyd

11 May 2020 16:35:39,588 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-607_2020-01-28_13-42-17/CPDR-FFPE-ID-607.skyd

11 May 2020 16:35:39,593 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,593 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80283/CPDR-FFPE-ID-607_2020-01-28_13-42-17.sky.zip

11 May 2020 16:35:39,593 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-607_2020-01-28_13-42-17.sky.zip

11 May 2020 16:35:39,617 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-573_2020-01-28_13-40-55.sky.zip; targetedms run ID 87026

11 May 2020 16:35:39,619 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,619 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80277/CPDR-FFPE-ID-573_2020-01-28_13-40-55/CPDR-FFPE-ID-573.skyd

11 May 2020 16:35:39,619 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-573_2020-01-28_13-40-55/CPDR-FFPE-ID-573.skyd

11 May 2020 16:35:39,624 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,624 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80277/CPDR-FFPE-ID-573_2020-01-28_13-40-55.sky.zip

11 May 2020 16:35:39,624 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-573_2020-01-28_13-40-55.sky.zip

11 May 2020 16:35:39,633 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-440_2020-01-28_13-27-00.sky.zip; targetedms run ID 87025

11 May 2020 16:35:39,633 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,633 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80231/CPDR-FFPE-ID-440_2020-01-28_13-27-00.sky.zip

11 May 2020 16:35:39,633 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-440_2020-01-28_13-27-00.sky.zip

11 May 2020 16:35:39,639 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,639 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80231/CPDR-FFPE-ID-440_2020-01-28_13-27-00/CPDR-FFPE-ID-440.skyd

11 May 2020 16:35:39,639 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-440_2020-01-28_13-27-00/CPDR-FFPE-ID-440.skyd

11 May 2020 16:35:39,647 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-497_2020-01-28_11-16-43.sky.zip; targetedms run ID 87024

11 May 2020 16:35:39,648 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,649 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80192/CPDR-FFPE-ID-497_2020-01-28_11-16-43/CPDR-FFPE-ID-497.skyd

11 May 2020 16:35:39,649 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-497_2020-01-28_11-16-43/CPDR-FFPE-ID-497.skyd

11 May 2020 16:35:39,653 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,654 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80192/CPDR-FFPE-ID-497_2020-01-28_11-16-43.sky.zip

11 May 2020 16:35:39,654 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-497_2020-01-28_11-16-43.sky.zip

11 May 2020 16:35:39,662 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-428_2020-01-28_11-16-26.sky.zip; targetedms run ID 87023

11 May 2020 16:35:39,663 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,663 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80191/CPDR-FFPE-ID-428_2020-01-28_11-16-26/CPDR-FFPE-ID-428.skyd

11 May 2020 16:35:39,663 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-428_2020-01-28_11-16-26/CPDR-FFPE-ID-428.skyd

11 May 2020 16:35:39,668 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,668 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80191/CPDR-FFPE-ID-428_2020-01-28_11-16-26.sky.zip

11 May 2020 16:35:39,668 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-428_2020-01-28_11-16-26.sky.zip

11 May 2020 16:35:39,677 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-1380_2020-01-29_14-57-50.sky.zip; targetedms run ID 87022

11 May 2020 16:35:39,678 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,678 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80478/CPDR-FFPE-ID-1380_2020-01-29_14-57-50/CPDR-FFPE-ID-1380.skyd

11 May 2020 16:35:39,678 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1380_2020-01-29_14-57-50/CPDR-FFPE-ID-1380.skyd

11 May 2020 16:35:39,683 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,683 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80478/CPDR-FFPE-ID-1380_2020-01-29_14-57-50.sky.zip

11 May 2020 16:35:39,683 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1380_2020-01-29_14-57-50.sky.zip

11 May 2020 16:35:39,691 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-1030_2020-01-29_14-49-38.sky.zip; targetedms run ID 87021

11 May 2020 16:35:39,693 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,693 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80474/CPDR-FFPE-ID-1030_2020-01-29_14-49-38/CPDR-FFPE-ID-1030.skyd

11 May 2020 16:35:39,693 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1030_2020-01-29_14-49-38/CPDR-FFPE-ID-1030.skyd

11 May 2020 16:35:39,697 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,698 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80474/CPDR-FFPE-ID-1030_2020-01-29_14-49-38.sky.zip

11 May 2020 16:35:39,698 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1030_2020-01-29_14-49-38.sky.zip

11 May 2020 16:35:39,706 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-726_2020-01-29_14-42-29.sky.zip; targetedms run ID 87020

11 May 2020 16:35:39,706 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,707 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80462/CPDR-FFPE-ID-726_2020-01-29_14-42-29.sky.zip

11 May 2020 16:35:39,707 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-726_2020-01-29_14-42-29.sky.zip

11 May 2020 16:35:39,712 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,712 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80462/CPDR-FFPE-ID-726_2020-01-29_14-42-29/CPDR-FFPE-ID-726.skyd

11 May 2020 16:35:39,712 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-726_2020-01-29_14-42-29/CPDR-FFPE-ID-726.skyd

11 May 2020 16:35:39,721 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-1217_2020-01-29_14-53-36.sky.zip; targetedms run ID 87019

11 May 2020 16:35:39,722 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,722 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80476/CPDR-FFPE-ID-1217_2020-01-29_14-53-36/CPDR-FFPE-ID-1217.skyd

11 May 2020 16:35:39,722 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1217_2020-01-29_14-53-36/CPDR-FFPE-ID-1217.skyd

11 May 2020 16:35:39,727 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,727 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80476/CPDR-FFPE-ID-1217_2020-01-29_14-53-36.sky.zip

11 May 2020 16:35:39,727 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1217_2020-01-29_14-53-36.sky.zip

11 May 2020 16:35:39,736 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-1059_2020-01-29_14-51-26.sky.zip; targetedms run ID 87018

11 May 2020 16:35:39,737 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,737 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80475/CPDR-FFPE-ID-1059_2020-01-29_14-51-26/CPDR-FFPE-ID-1059.skyd

11 May 2020 16:35:39,737 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1059_2020-01-29_14-51-26/CPDR-FFPE-ID-1059.skyd

11 May 2020 16:35:39,797 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,797 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80475/CPDR-FFPE-ID-1059_2020-01-29_14-51-26.sky.zip

11 May 2020 16:35:39,797 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1059_2020-01-29_14-51-26.sky.zip

11 May 2020 16:35:39,806 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-837_2020-01-29_14-45-59.sky.zip; targetedms run ID 87017

11 May 2020 16:35:39,806 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,806 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80466/CPDR-FFPE-ID-837_2020-01-29_14-45-59.sky.zip

11 May 2020 16:35:39,807 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-837_2020-01-29_14-45-59.sky.zip

11 May 2020 16:35:39,812 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,812 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80466/CPDR-FFPE-ID-837_2020-01-29_14-45-59/CPDR-FFPE-ID-837.skyd

11 May 2020 16:35:39,813 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-837_2020-01-29_14-45-59/CPDR-FFPE-ID-837.skyd

11 May 2020 16:35:39,822 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-835_2020-01-29_14-45-16.sky.zip; targetedms run ID 87016

11 May 2020 16:35:39,823 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,823 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80465/CPDR-FFPE-ID-835_2020-01-29_14-45-16/CPDR-FFPE-ID-835.skyd

11 May 2020 16:35:39,823 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-835_2020-01-29_14-45-16/CPDR-FFPE-ID-835.skyd

11 May 2020 16:35:39,828 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,828 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80465/CPDR-FFPE-ID-835_2020-01-29_14-45-16.sky.zip

11 May 2020 16:35:39,828 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-835_2020-01-29_14-45-16.sky.zip

11 May 2020 16:35:39,837 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-675_2020-01-29_14-30-10.sky.zip; targetedms run ID 87015

11 May 2020 16:35:39,839 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,839 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80460/CPDR-FFPE-ID-675_2020-01-29_14-30-10/CPDR-FFPE-ID-675.skyd

11 May 2020 16:35:39,839 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-675_2020-01-29_14-30-10/CPDR-FFPE-ID-675.skyd

11 May 2020 16:35:39,844 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,844 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80460/CPDR-FFPE-ID-675_2020-01-29_14-30-10.sky.zip

11 May 2020 16:35:39,844 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-675_2020-01-29_14-30-10.sky.zip

11 May 2020 16:35:39,853 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-659_2020-01-29_13-41-39.sky.zip; targetedms run ID 87014

11 May 2020 16:35:39,855 INFO : Adding ExpData for .skyd file

11 May 2020 16:35:39,856 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,856 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80459/CPDR-FFPE-ID-659.skyd

11 May 2020 16:35:39,856 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-659_2020-01-29_13-41-39/CPDR-FFPE-ID-659.skyd

11 May 2020 16:35:39,861 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,861 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80459/CPDR-FFPE-ID-659_2020-01-29_13-41-39.sky.zip

11 May 2020 16:35:39,862 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-659_2020-01-29_13-41-39.sky.zip

11 May 2020 16:35:39,867 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,867 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80459/CPDR-FFPE-ID-659_2020-01-29_13-41-39/CPDR-FFPE-ID-659.skyd

11 May 2020 16:35:39,867 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-659_2020-01-29_13-41-39/CPDR-FFPE-ID-659.skyd

11 May 2020 16:35:39,876 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-808_2020-01-29_12-41-02.sky.zip; targetedms run ID 87013

11 May 2020 16:35:39,877 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,877 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80441/CPDR-FFPE-ID-808_2020-01-29_12-41-02/CPDR-FFPE-ID-808.skyd

11 May 2020 16:35:39,877 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-808_2020-01-29_12-41-02/CPDR-FFPE-ID-808.skyd

11 May 2020 16:35:39,882 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,883 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80441/CPDR-FFPE-ID-808_2020-01-29_12-41-02.sky.zip

11 May 2020 16:35:39,883 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-808_2020-01-29_12-41-02.sky.zip

11 May 2020 16:35:39,892 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-1442_2020-01-29_12-40-36.sky.zip; targetedms run ID 87012

11 May 2020 16:35:39,892 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,892 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80439/CPDR-FFPE-ID-1442_2020-01-29_12-40-36.sky.zip

11 May 2020 16:35:39,892 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1442_2020-01-29_12-40-36.sky.zip

11 May 2020 16:35:39,898 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,898 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80439/CPDR-FFPE-ID-1442_2020-01-29_12-40-36/CPDR-FFPE-ID-1442.skyd

11 May 2020 16:35:39,898 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1442_2020-01-29_12-40-36/CPDR-FFPE-ID-1442.skyd

11 May 2020 16:35:39,907 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-928_2020-01-29_12-40-07.sky.zip; targetedms run ID 87011

11 May 2020 16:35:39,909 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,909 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80437/CPDR-FFPE-ID-928_2020-01-29_12-40-07/CPDR-FFPE-ID-928.skyd

11 May 2020 16:35:39,909 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-928_2020-01-29_12-40-07/CPDR-FFPE-ID-928.skyd

11 May 2020 16:35:39,914 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,914 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80437/CPDR-FFPE-ID-928_2020-01-29_12-40-07.sky.zip

11 May 2020 16:35:39,914 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-928_2020-01-29_12-40-07.sky.zip

11 May 2020 16:35:39,923 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-939_2020-01-29_12-39-50.sky.zip; targetedms run ID 87010

11 May 2020 16:35:39,924 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,925 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80436/CPDR-FFPE-ID-939_2020-01-29_12-39-50/CPDR-FFPE-ID-939.skyd

11 May 2020 16:35:39,925 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-939_2020-01-29_12-39-50/CPDR-FFPE-ID-939.skyd

11 May 2020 16:35:39,930 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,930 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80436/CPDR-FFPE-ID-939_2020-01-29_12-39-50.sky.zip

11 May 2020 16:35:39,930 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-939_2020-01-29_12-39-50.sky.zip

11 May 2020 16:35:39,939 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-1530_2020-01-29_12-38-39.sky.zip; targetedms run ID 87009

11 May 2020 16:35:39,939 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,940 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80431/CPDR-FFPE-ID-1530_2020-01-29_12-38-39.sky.zip

11 May 2020 16:35:39,940 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1530_2020-01-29_12-38-39.sky.zip

11 May 2020 16:35:39,946 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,946 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80431/CPDR-FFPE-ID-1530_2020-01-29_12-38-39/CPDR-FFPE-ID-1530.skyd

11 May 2020 16:35:39,946 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1530_2020-01-29_12-38-39/CPDR-FFPE-ID-1530.skyd

11 May 2020 16:35:39,954 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-796_2020-01-29_12-35-45.sky.zip; targetedms run ID 87008

11 May 2020 16:35:39,955 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,956 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80421/CPDR-FFPE-ID-796_2020-01-29_12-35-45/CPDR-FFPE-ID-796.skyd

11 May 2020 16:35:39,956 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-796_2020-01-29_12-35-45/CPDR-FFPE-ID-796.skyd

11 May 2020 16:35:39,960 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,961 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80421/CPDR-FFPE-ID-796_2020-01-29_12-35-45.sky.zip

11 May 2020 16:35:39,961 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-796_2020-01-29_12-35-45.sky.zip

11 May 2020 16:35:39,969 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-1090_2020-01-29_12-35-31.sky.zip; targetedms run ID 87007

11 May 2020 16:35:39,970 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,970 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80420/CPDR-FFPE-ID-1090_2020-01-29_12-35-31.sky.zip

11 May 2020 16:35:39,970 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1090_2020-01-29_12-35-31.sky.zip

11 May 2020 16:35:39,975 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,975 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80420/CPDR-FFPE-ID-1090_2020-01-29_12-35-31/CPDR-FFPE-ID-1090.skyd

11 May 2020 16:35:39,975 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1090_2020-01-29_12-35-31/CPDR-FFPE-ID-1090.skyd

11 May 2020 16:35:39,984 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-816_2020-01-29_12-35-04.sky.zip; targetedms run ID 87006

11 May 2020 16:35:39,985 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,985 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80418/CPDR-FFPE-ID-816_2020-01-29_12-35-04.sky.zip

11 May 2020 16:35:39,985 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-816_2020-01-29_12-35-04.sky.zip

11 May 2020 16:35:39,991 INFO : Updating dataFileUrl...

11 May 2020 16:35:39,991 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80418/CPDR-FFPE-ID-816_2020-01-29_12-35-04/CPDR-FFPE-ID-816.skyd

11 May 2020 16:35:39,991 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-816_2020-01-29_12-35-04/CPDR-FFPE-ID-816.skyd

11 May 2020 16:35:39,999 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-831_2020-01-29_12-33-40.sky.zip; targetedms run ID 87005

11 May 2020 16:35:40,000 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,000 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80412/CPDR-FFPE-ID-831_2020-01-29_12-33-40.sky.zip

11 May 2020 16:35:40,000 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-831_2020-01-29_12-33-40.sky.zip

11 May 2020 16:35:40,006 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,006 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80412/CPDR-FFPE-ID-831_2020-01-29_12-33-40/CPDR-FFPE-ID-831.skyd

11 May 2020 16:35:40,006 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-831_2020-01-29_12-33-40/CPDR-FFPE-ID-831.skyd

11 May 2020 16:35:40,014 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-846_2020-01-29_12-34-49.sky.zip; targetedms run ID 87004

11 May 2020 16:35:40,015 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,015 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80417/CPDR-FFPE-ID-846_2020-01-29_12-34-49/CPDR-FFPE-ID-846.skyd

11 May 2020 16:35:40,016 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-846_2020-01-29_12-34-49/CPDR-FFPE-ID-846.skyd

11 May 2020 16:35:40,020 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,020 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80417/CPDR-FFPE-ID-846_2020-01-29_12-34-49.sky.zip

11 May 2020 16:35:40,021 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-846_2020-01-29_12-34-49.sky.zip

11 May 2020 16:35:40,029 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-1177_2020-01-29_12-34-34.sky.zip; targetedms run ID 87003

11 May 2020 16:35:40,029 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,029 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80416/CPDR-FFPE-ID-1177_2020-01-29_12-34-34.sky.zip

11 May 2020 16:35:40,030 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1177_2020-01-29_12-34-34.sky.zip

11 May 2020 16:35:40,035 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,035 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80416/CPDR-FFPE-ID-1177_2020-01-29_12-34-34/CPDR-FFPE-ID-1177.skyd

11 May 2020 16:35:40,035 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1177_2020-01-29_12-34-34/CPDR-FFPE-ID-1177.skyd

11 May 2020 16:35:40,043 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-958_2020-01-29_12-34-21.sky.zip; targetedms run ID 87002

11 May 2020 16:35:40,044 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,044 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80415/CPDR-FFPE-ID-958_2020-01-29_12-34-21.sky.zip

11 May 2020 16:35:40,044 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-958_2020-01-29_12-34-21.sky.zip

11 May 2020 16:35:40,050 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,050 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80415/CPDR-FFPE-ID-958_2020-01-29_12-34-21/CPDR-FFPE-ID-958.skyd

11 May 2020 16:35:40,050 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-958_2020-01-29_12-34-21/CPDR-FFPE-ID-958.skyd

11 May 2020 16:35:40,059 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-1502_2020-01-29_12-33-53.sky.zip; targetedms run ID 87001

11 May 2020 16:35:40,060 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,060 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80413/CPDR-FFPE-ID-1502_2020-01-29_12-33-53/CPDR-FFPE-ID-1502.skyd

11 May 2020 16:35:40,060 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1502_2020-01-29_12-33-53/CPDR-FFPE-ID-1502.skyd

11 May 2020 16:35:40,065 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,065 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80413/CPDR-FFPE-ID-1502_2020-01-29_12-33-53.sky.zip

11 May 2020 16:35:40,065 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1502_2020-01-29_12-33-53.sky.zip

11 May 2020 16:35:40,073 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-224_2020-01-29_12-33-29.sky.zip; targetedms run ID 87000

11 May 2020 16:35:40,074 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,074 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80411/CPDR-FFPE-ID-224_2020-01-29_12-33-29.sky.zip

11 May 2020 16:35:40,074 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-224_2020-01-29_12-33-29.sky.zip

11 May 2020 16:35:40,080 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,080 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80411/CPDR-FFPE-ID-224_2020-01-29_12-33-29/CPDR-FFPE-ID-224.skyd

11 May 2020 16:35:40,080 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-224_2020-01-29_12-33-29/CPDR-FFPE-ID-224.skyd

11 May 2020 16:35:40,091 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-912_2020-01-29_12-31-33.sky.zip; targetedms run ID 86999

11 May 2020 16:35:40,093 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,093 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80405/CPDR-FFPE-ID-912_2020-01-29_12-31-33/CPDR-FFPE-ID-912.skyd

11 May 2020 16:35:40,093 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-912_2020-01-29_12-31-33/CPDR-FFPE-ID-912.skyd

11 May 2020 16:35:40,099 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,099 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80405/CPDR-FFPE-ID-912_2020-01-29_12-31-33.sky.zip

11 May 2020 16:35:40,099 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-912_2020-01-29_12-31-33.sky.zip

11 May 2020 16:35:40,110 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-698_2020-01-29_12-26-45.sky.zip; targetedms run ID 86998

11 May 2020 16:35:40,110 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,110 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80399/CPDR-FFPE-ID-698_2020-01-29_12-26-45.sky.zip

11 May 2020 16:35:40,111 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-698_2020-01-29_12-26-45.sky.zip

11 May 2020 16:35:40,116 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,116 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80399/CPDR-FFPE-ID-698_2020-01-29_12-26-45/CPDR-FFPE-ID-698.skyd

11 May 2020 16:35:40,116 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-698_2020-01-29_12-26-45/CPDR-FFPE-ID-698.skyd

11 May 2020 16:35:40,125 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-769_2020-01-29_12-23-21.sky.zip; targetedms run ID 86997

11 May 2020 16:35:40,126 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,126 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80388/CPDR-FFPE-ID-769_2020-01-29_12-23-21.sky.zip

11 May 2020 16:35:40,126 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-769_2020-01-29_12-23-21.sky.zip

11 May 2020 16:35:40,132 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,132 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80388/CPDR-FFPE-ID-769_2020-01-29_12-23-21/CPDR-FFPE-ID-769.skyd

11 May 2020 16:35:40,132 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-769_2020-01-29_12-23-21/CPDR-FFPE-ID-769.skyd

11 May 2020 16:35:40,142 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-776_2020-01-29_12-44-15.sky.zip; targetedms run ID 86996

11 May 2020 16:35:40,143 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,143 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80444/CPDR-FFPE-ID-776_2020-01-29_12-44-15/CPDR-FFPE-ID-776.skyd

11 May 2020 16:35:40,144 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-776_2020-01-29_12-44-15/CPDR-FFPE-ID-776.skyd

11 May 2020 16:35:40,149 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,149 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80444/CPDR-FFPE-ID-776_2020-01-29_12-44-15.sky.zip

11 May 2020 16:35:40,150 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-776_2020-01-29_12-44-15.sky.zip

11 May 2020 16:35:40,159 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-1350_2020-01-29_12-40-21.sky.zip; targetedms run ID 86995

11 May 2020 16:35:40,161 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,161 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80438/CPDR-FFPE-ID-1350_2020-01-29_12-40-21/CPDR-FFPE-ID-1350.skyd

11 May 2020 16:35:40,161 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1350_2020-01-29_12-40-21/CPDR-FFPE-ID-1350.skyd

11 May 2020 16:35:40,166 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,166 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80438/CPDR-FFPE-ID-1350_2020-01-29_12-40-21.sky.zip

11 May 2020 16:35:40,167 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1350_2020-01-29_12-40-21.sky.zip

11 May 2020 16:35:40,176 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-1660_2020-01-29_12-39-36.sky.zip; targetedms run ID 86994

11 May 2020 16:35:40,176 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,176 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80435/CPDR-FFPE-ID-1660_2020-01-29_12-39-36.sky.zip

11 May 2020 16:35:40,176 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1660_2020-01-29_12-39-36.sky.zip

11 May 2020 16:35:40,182 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,182 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80435/CPDR-FFPE-ID-1660_2020-01-29_12-39-36/CPDR-FFPE-ID-1660.skyd

11 May 2020 16:35:40,183 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1660_2020-01-29_12-39-36/CPDR-FFPE-ID-1660.skyd

11 May 2020 16:35:40,191 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-804_2020-01-29_12-39-10.sky.zip; targetedms run ID 86993

11 May 2020 16:35:40,192 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,193 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80433/CPDR-FFPE-ID-804_2020-01-29_12-39-10/CPDR-FFPE-ID-804.skyd

11 May 2020 16:35:40,193 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-804_2020-01-29_12-39-10/CPDR-FFPE-ID-804.skyd

11 May 2020 16:35:40,198 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,198 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80433/CPDR-FFPE-ID-804_2020-01-29_12-39-10.sky.zip

11 May 2020 16:35:40,198 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-804_2020-01-29_12-39-10.sky.zip

11 May 2020 16:35:40,207 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-995_2020-01-29_12-38-23.sky.zip; targetedms run ID 86992

11 May 2020 16:35:40,207 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,207 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80430/CPDR-FFPE-ID-995_2020-01-29_12-38-23.sky.zip

11 May 2020 16:35:40,207 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-995_2020-01-29_12-38-23.sky.zip

11 May 2020 16:35:40,213 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,213 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80430/CPDR-FFPE-ID-995_2020-01-29_12-38-23/CPDR-FFPE-ID-995.skyd

11 May 2020 16:35:40,213 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-995_2020-01-29_12-38-23/CPDR-FFPE-ID-995.skyd

11 May 2020 16:35:40,222 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-1423_2020-01-29_12-38-07.sky.zip; targetedms run ID 86991

11 May 2020 16:35:40,223 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,223 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80429/CPDR-FFPE-ID-1423_2020-01-29_12-38-07/CPDR-FFPE-ID-1423.skyd

11 May 2020 16:35:40,224 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1423_2020-01-29_12-38-07/CPDR-FFPE-ID-1423.skyd

11 May 2020 16:35:40,229 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,229 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80429/CPDR-FFPE-ID-1423_2020-01-29_12-38-07.sky.zip

11 May 2020 16:35:40,229 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1423_2020-01-29_12-38-07.sky.zip

11 May 2020 16:35:40,238 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-1552_2020-01-29_12-36-56.sky.zip; targetedms run ID 86990

11 May 2020 16:35:40,240 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,240 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80425/CPDR-FFPE-ID-1552_2020-01-29_12-36-56/CPDR-FFPE-ID-1552.skyd

11 May 2020 16:35:40,240 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1552_2020-01-29_12-36-56/CPDR-FFPE-ID-1552.skyd

11 May 2020 16:35:40,245 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,245 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80425/CPDR-FFPE-ID-1552_2020-01-29_12-36-56.sky.zip

11 May 2020 16:35:40,245 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1552_2020-01-29_12-36-56.sky.zip

11 May 2020 16:35:40,255 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-1137_2020-01-29_12-36-39.sky.zip; targetedms run ID 86989

11 May 2020 16:35:40,255 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,255 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80424/CPDR-FFPE-ID-1137_2020-01-29_12-36-39.sky.zip

11 May 2020 16:35:40,255 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1137_2020-01-29_12-36-39.sky.zip

11 May 2020 16:35:40,261 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,261 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80424/CPDR-FFPE-ID-1137_2020-01-29_12-36-39/CPDR-FFPE-ID-1137.skyd

11 May 2020 16:35:40,261 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1137_2020-01-29_12-36-39/CPDR-FFPE-ID-1137.skyd

11 May 2020 16:35:40,271 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-1147_2020-01-29_12-35-59.sky.zip; targetedms run ID 86988

11 May 2020 16:35:40,271 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,272 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80422/CPDR-FFPE-ID-1147_2020-01-29_12-35-59.sky.zip

11 May 2020 16:35:40,272 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1147_2020-01-29_12-35-59.sky.zip

11 May 2020 16:35:40,278 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,278 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80422/CPDR-FFPE-ID-1147_2020-01-29_12-35-59/CPDR-FFPE-ID-1147.skyd

11 May 2020 16:35:40,278 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1147_2020-01-29_12-35-59/CPDR-FFPE-ID-1147.skyd

11 May 2020 16:35:40,287 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-1103_2020-01-29_12-32-17.sky.zip; targetedms run ID 86987

11 May 2020 16:35:40,288 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,288 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80407/CPDR-FFPE-ID-1103_2020-01-29_12-32-17.sky.zip

11 May 2020 16:35:40,288 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1103_2020-01-29_12-32-17.sky.zip

11 May 2020 16:35:40,294 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,294 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80407/CPDR-FFPE-ID-1103_2020-01-29_12-32-17/CPDR-FFPE-ID-1103.skyd

11 May 2020 16:35:40,294 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1103_2020-01-29_12-32-17/CPDR-FFPE-ID-1103.skyd

11 May 2020 16:35:40,302 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-656_2020-01-29_12-30-34.sky.zip; targetedms run ID 86986

11 May 2020 16:35:40,303 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,303 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80402/CPDR-FFPE-ID-656_2020-01-29_12-30-34.sky.zip

11 May 2020 16:35:40,303 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-656_2020-01-29_12-30-34.sky.zip

11 May 2020 16:35:40,308 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,308 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80402/CPDR-FFPE-ID-656_2020-01-29_12-30-34/CPDR-FFPE-ID-656.skyd

11 May 2020 16:35:40,309 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-656_2020-01-29_12-30-34/CPDR-FFPE-ID-656.skyd

11 May 2020 16:35:40,317 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-651_2020-01-29_12-22-55.sky.zip; targetedms run ID 86985

11 May 2020 16:35:40,317 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,318 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80386/CPDR-FFPE-ID-651_2020-01-29_12-22-55.sky.zip

11 May 2020 16:35:40,318 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-651_2020-01-29_12-22-55.sky.zip

11 May 2020 16:35:40,323 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,323 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80386/CPDR-FFPE-ID-651_2020-01-29_12-22-55/CPDR-FFPE-ID-651.skyd

11 May 2020 16:35:40,323 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-651_2020-01-29_12-22-55/CPDR-FFPE-ID-651.skyd

11 May 2020 16:35:40,332 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-1145_2020-01-29_12-22-42.sky.zip; targetedms run ID 86984

11 May 2020 16:35:40,332 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,332 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80385/CPDR-FFPE-ID-1145_2020-01-29_12-22-42.sky.zip

11 May 2020 16:35:40,332 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1145_2020-01-29_12-22-42.sky.zip

11 May 2020 16:35:40,338 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,338 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80385/CPDR-FFPE-ID-1145_2020-01-29_12-22-42/CPDR-FFPE-ID-1145.skyd

11 May 2020 16:35:40,338 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1145_2020-01-29_12-22-42/CPDR-FFPE-ID-1145.skyd

11 May 2020 16:35:40,346 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-736_2020-01-29_12-22-25.sky.zip; targetedms run ID 86983

11 May 2020 16:35:40,347 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,347 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80384/CPDR-FFPE-ID-736_2020-01-29_12-22-25.sky.zip

11 May 2020 16:35:40,347 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-736_2020-01-29_12-22-25.sky.zip

11 May 2020 16:35:40,353 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,353 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80384/CPDR-FFPE-ID-736_2020-01-29_12-22-25/CPDR-FFPE-ID-736.skyd

11 May 2020 16:35:40,353 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-736_2020-01-29_12-22-25/CPDR-FFPE-ID-736.skyd

11 May 2020 16:35:40,361 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-1544_2020-01-29_12-45-45.sky.zip; targetedms run ID 86982

11 May 2020 16:35:40,362 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,363 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80450/CPDR-FFPE-ID-1544_2020-01-29_12-45-45/CPDR-FFPE-ID-1544.skyd

11 May 2020 16:35:40,363 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1544_2020-01-29_12-45-45/CPDR-FFPE-ID-1544.skyd

11 May 2020 16:35:40,367 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,368 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80450/CPDR-FFPE-ID-1544_2020-01-29_12-45-45.sky.zip

11 May 2020 16:35:40,368 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1544_2020-01-29_12-45-45.sky.zip

11 May 2020 16:35:40,376 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-832_2020-01-29_12-45-03.sky.zip; targetedms run ID 86981

11 May 2020 16:35:40,377 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,377 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80447/CPDR-FFPE-ID-832_2020-01-29_12-45-03.sky.zip

11 May 2020 16:35:40,377 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-832_2020-01-29_12-45-03.sky.zip

11 May 2020 16:35:40,382 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,382 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80447/CPDR-FFPE-ID-832_2020-01-29_12-45-03/CPDR-FFPE-ID-832.skyd

11 May 2020 16:35:40,383 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-832_2020-01-29_12-45-03/CPDR-FFPE-ID-832.skyd

11 May 2020 16:35:40,391 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-1274_2020-01-29_12-44-50.sky.zip; targetedms run ID 86980

11 May 2020 16:35:40,392 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,392 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80446/CPDR-FFPE-ID-1274_2020-01-29_12-44-50/CPDR-FFPE-ID-1274.skyd

11 May 2020 16:35:40,392 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1274_2020-01-29_12-44-50/CPDR-FFPE-ID-1274.skyd

11 May 2020 16:35:40,397 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,397 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80446/CPDR-FFPE-ID-1274_2020-01-29_12-44-50.sky.zip

11 May 2020 16:35:40,397 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1274_2020-01-29_12-44-50.sky.zip

11 May 2020 16:35:40,406 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-1641_2020-01-29_12-37-12.sky.zip; targetedms run ID 86979

11 May 2020 16:35:40,406 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,406 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80426/CPDR-FFPE-ID-1641_2020-01-29_12-37-12.sky.zip

11 May 2020 16:35:40,406 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1641_2020-01-29_12-37-12.sky.zip

11 May 2020 16:35:40,412 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,412 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80426/CPDR-FFPE-ID-1641_2020-01-29_12-37-12/CPDR-FFPE-ID-1641.skyd

11 May 2020 16:35:40,412 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1641_2020-01-29_12-37-12/CPDR-FFPE-ID-1641.skyd

11 May 2020 16:35:40,420 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-1326_2020-01-29_12-36-23.sky.zip; targetedms run ID 86978

11 May 2020 16:35:40,421 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,421 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80423/CPDR-FFPE-ID-1326_2020-01-29_12-36-23.sky.zip

11 May 2020 16:35:40,421 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1326_2020-01-29_12-36-23.sky.zip

11 May 2020 16:35:40,426 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,427 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80423/CPDR-FFPE-ID-1326_2020-01-29_12-36-23/CPDR-FFPE-ID-1326.skyd

11 May 2020 16:35:40,427 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1326_2020-01-29_12-36-23/CPDR-FFPE-ID-1326.skyd

11 May 2020 16:35:40,450 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-1187_2020-01-29_12-34-08.sky.zip; targetedms run ID 86977

11 May 2020 16:35:40,450 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,451 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80414/CPDR-FFPE-ID-1187_2020-01-29_12-34-08.sky.zip

11 May 2020 16:35:40,451 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1187_2020-01-29_12-34-08.sky.zip

11 May 2020 16:35:40,457 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,457 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80414/CPDR-FFPE-ID-1187_2020-01-29_12-34-08/CPDR-FFPE-ID-1187.skyd

11 May 2020 16:35:40,457 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1187_2020-01-29_12-34-08/CPDR-FFPE-ID-1187.skyd

11 May 2020 16:35:40,466 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-902_2020-01-29_12-32-38.sky.zip; targetedms run ID 86976

11 May 2020 16:35:40,467 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,467 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80408/CPDR-FFPE-ID-902_2020-01-29_12-32-38.sky.zip

11 May 2020 16:35:40,467 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-902_2020-01-29_12-32-38.sky.zip

11 May 2020 16:35:40,474 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,474 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80408/CPDR-FFPE-ID-902_2020-01-29_12-32-38/CPDR-FFPE-ID-902.skyd

11 May 2020 16:35:40,474 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-902_2020-01-29_12-32-38/CPDR-FFPE-ID-902.skyd

11 May 2020 16:35:40,483 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-1484_2020-01-29_12-31-13.sky.zip; targetedms run ID 86975

11 May 2020 16:35:40,484 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,484 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80404/CPDR-FFPE-ID-1484_2020-01-29_12-31-13.sky.zip

11 May 2020 16:35:40,484 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1484_2020-01-29_12-31-13.sky.zip

11 May 2020 16:35:40,490 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,490 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80404/CPDR-FFPE-ID-1484_2020-01-29_12-31-13/CPDR-FFPE-ID-1484.skyd

11 May 2020 16:35:40,490 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1484_2020-01-29_12-31-13/CPDR-FFPE-ID-1484.skyd

11 May 2020 16:35:40,499 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-1053_2020-01-29_12-27-02.sky.zip; targetedms run ID 86974

11 May 2020 16:35:40,499 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,500 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80400/CPDR-FFPE-ID-1053_2020-01-29_12-27-02.sky.zip

11 May 2020 16:35:40,500 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1053_2020-01-29_12-27-02.sky.zip

11 May 2020 16:35:40,505 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,506 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80400/CPDR-FFPE-ID-1053_2020-01-29_12-27-02/CPDR-FFPE-ID-1053.skyd

11 May 2020 16:35:40,506 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1053_2020-01-29_12-27-02/CPDR-FFPE-ID-1053.skyd

11 May 2020 16:35:40,515 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-1222_2020-01-29_12-26-22.sky.zip; targetedms run ID 86973

11 May 2020 16:35:40,515 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,515 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80398/CPDR-FFPE-ID-1222_2020-01-29_12-26-22.sky.zip

11 May 2020 16:35:40,516 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1222_2020-01-29_12-26-22.sky.zip

11 May 2020 16:35:40,521 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,521 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80398/CPDR-FFPE-ID-1222_2020-01-29_12-26-22/CPDR-FFPE-ID-1222.skyd

11 May 2020 16:35:40,522 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1222_2020-01-29_12-26-22/CPDR-FFPE-ID-1222.skyd

11 May 2020 16:35:40,530 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-855_2020-01-29_12-25-41.sky.zip; targetedms run ID 86972

11 May 2020 16:35:40,530 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,531 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80396/CPDR-FFPE-ID-855_2020-01-29_12-25-41.sky.zip

11 May 2020 16:35:40,531 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-855_2020-01-29_12-25-41.sky.zip

11 May 2020 16:35:40,536 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,536 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80396/CPDR-FFPE-ID-855_2020-01-29_12-25-41/CPDR-FFPE-ID-855.skyd

11 May 2020 16:35:40,537 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-855_2020-01-29_12-25-41/CPDR-FFPE-ID-855.skyd

11 May 2020 16:35:40,545 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-881_2020-01-29_12-22-13.sky.zip; targetedms run ID 86971

11 May 2020 16:35:40,545 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,545 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80383/CPDR-FFPE-ID-881_2020-01-29_12-22-13.sky.zip

11 May 2020 16:35:40,546 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-881_2020-01-29_12-22-13.sky.zip

11 May 2020 16:35:40,551 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,551 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80383/CPDR-FFPE-ID-881_2020-01-29_12-22-13/CPDR-FFPE-ID-881.skyd

11 May 2020 16:35:40,551 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-881_2020-01-29_12-22-13/CPDR-FFPE-ID-881.skyd

11 May 2020 16:35:40,560 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-890_2020-01-29_14-47-51.sky.zip; targetedms run ID 86970

11 May 2020 16:35:40,561 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,561 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80473/CPDR-FFPE-ID-890_2020-01-29_14-47-51/CPDR-FFPE-ID-890.skyd

11 May 2020 16:35:40,561 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-890_2020-01-29_14-47-51/CPDR-FFPE-ID-890.skyd

11 May 2020 16:35:40,566 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,566 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80473/CPDR-FFPE-ID-890_2020-01-29_14-47-51.sky.zip

11 May 2020 16:35:40,566 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-890_2020-01-29_14-47-51.sky.zip

11 May 2020 16:35:40,574 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-887_2020-01-29_14-46-45.sky.zip; targetedms run ID 86969

11 May 2020 16:35:40,576 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,576 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80472/CPDR-FFPE-ID-887_2020-01-29_14-46-45/CPDR-FFPE-ID-887.skyd

11 May 2020 16:35:40,576 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-887_2020-01-29_14-46-45/CPDR-FFPE-ID-887.skyd

11 May 2020 16:35:40,581 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,581 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80472/CPDR-FFPE-ID-887_2020-01-29_14-46-45.sky.zip

11 May 2020 16:35:40,581 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-887_2020-01-29_14-46-45.sky.zip

11 May 2020 16:35:40,589 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-750_2020-01-29_14-44-35.sky.zip; targetedms run ID 86968

11 May 2020 16:35:40,590 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,591 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80464/CPDR-FFPE-ID-750_2020-01-29_14-44-35/CPDR-FFPE-ID-750.skyd

11 May 2020 16:35:40,591 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-750_2020-01-29_14-44-35/CPDR-FFPE-ID-750.skyd

11 May 2020 16:35:40,595 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,596 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80464/CPDR-FFPE-ID-750_2020-01-29_14-44-35.sky.zip

11 May 2020 16:35:40,596 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-750_2020-01-29_14-44-35.sky.zip

11 May 2020 16:35:40,604 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-742_2020-01-29_14-43-25.sky.zip; targetedms run ID 86967

11 May 2020 16:35:40,605 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,605 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80463/CPDR-FFPE-ID-742_2020-01-29_14-43-25/CPDR-FFPE-ID-742.skyd

11 May 2020 16:35:40,605 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-742_2020-01-29_14-43-25/CPDR-FFPE-ID-742.skyd

11 May 2020 16:35:40,610 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,610 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80463/CPDR-FFPE-ID-742_2020-01-29_14-43-25.sky.zip

11 May 2020 16:35:40,610 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-742_2020-01-29_14-43-25.sky.zip

11 May 2020 16:35:40,619 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-652_2020-01-29_12-19-24.sky.zip; targetedms run ID 86966

11 May 2020 16:35:40,619 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,619 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80371/CPDR-FFPE-ID-652_2020-01-29_12-19-24.sky.zip

11 May 2020 16:35:40,619 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-652_2020-01-29_12-19-24.sky.zip

11 May 2020 16:35:40,625 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,625 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80371/CPDR-FFPE-ID-652_2020-01-29_12-19-24/CPDR-FFPE-ID-652.skyd

11 May 2020 16:35:40,625 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-652_2020-01-29_12-19-24/CPDR-FFPE-ID-652.skyd

11 May 2020 16:35:40,633 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-884_2020-01-29_12-19-09.sky.zip; targetedms run ID 86965

11 May 2020 16:35:40,634 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,634 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80370/CPDR-FFPE-ID-884_2020-01-29_12-19-09.sky.zip

11 May 2020 16:35:40,634 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-884_2020-01-29_12-19-09.sky.zip

11 May 2020 16:35:40,639 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,640 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80370/CPDR-FFPE-ID-884_2020-01-29_12-19-09/CPDR-FFPE-ID-884.skyd

11 May 2020 16:35:40,640 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-884_2020-01-29_12-19-09/CPDR-FFPE-ID-884.skyd

11 May 2020 16:35:40,648 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-727_2020-01-29_12-18-58.sky.zip; targetedms run ID 86964

11 May 2020 16:35:40,649 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,649 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80369/CPDR-FFPE-ID-727_2020-01-29_12-18-58.sky.zip

11 May 2020 16:35:40,649 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-727_2020-01-29_12-18-58.sky.zip

11 May 2020 16:35:40,654 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,654 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80369/CPDR-FFPE-ID-727_2020-01-29_12-18-58/CPDR-FFPE-ID-727.skyd

11 May 2020 16:35:40,654 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-727_2020-01-29_12-18-58/CPDR-FFPE-ID-727.skyd

11 May 2020 16:35:40,663 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-644_2020-01-29_12-18-45.sky.zip; targetedms run ID 86963

11 May 2020 16:35:40,664 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,664 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80368/CPDR-FFPE-ID-644_2020-01-29_12-18-45/CPDR-FFPE-ID-644.skyd

11 May 2020 16:35:40,664 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-644_2020-01-29_12-18-45/CPDR-FFPE-ID-644.skyd

11 May 2020 16:35:40,669 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,669 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80368/CPDR-FFPE-ID-644_2020-01-29_12-18-45.sky.zip

11 May 2020 16:35:40,669 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-644_2020-01-29_12-18-45.sky.zip

11 May 2020 16:35:40,678 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-689_2020-01-29_12-16-38.sky.zip; targetedms run ID 86962

11 May 2020 16:35:40,678 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,678 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80359/CPDR-FFPE-ID-689_2020-01-29_12-16-38.sky.zip

11 May 2020 16:35:40,678 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-689_2020-01-29_12-16-38.sky.zip

11 May 2020 16:35:40,684 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,684 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80359/CPDR-FFPE-ID-689_2020-01-29_12-16-38/CPDR-FFPE-ID-689.skyd

11 May 2020 16:35:40,684 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-689_2020-01-29_12-16-38/CPDR-FFPE-ID-689.skyd

11 May 2020 16:35:40,692 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-830_2020-01-29_12-16-25.sky.zip; targetedms run ID 86961

11 May 2020 16:35:40,693 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,693 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80358/CPDR-FFPE-ID-830_2020-01-29_12-16-25.sky.zip

11 May 2020 16:35:40,693 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-830_2020-01-29_12-16-25.sky.zip

11 May 2020 16:35:40,699 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,699 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80358/CPDR-FFPE-ID-830_2020-01-29_12-16-25/CPDR-FFPE-ID-830.skyd

11 May 2020 16:35:40,699 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-830_2020-01-29_12-16-25/CPDR-FFPE-ID-830.skyd

11 May 2020 16:35:40,707 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-824_2020-01-29_12-46-27.sky.zip; targetedms run ID 86960

11 May 2020 16:35:40,708 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,708 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80453/CPDR-FFPE-ID-824_2020-01-29_12-46-27/CPDR-FFPE-ID-824.skyd

11 May 2020 16:35:40,709 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-824_2020-01-29_12-46-27/CPDR-FFPE-ID-824.skyd

11 May 2020 16:35:40,713 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,713 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80453/CPDR-FFPE-ID-824_2020-01-29_12-46-27.sky.zip

11 May 2020 16:35:40,714 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-824_2020-01-29_12-46-27.sky.zip

11 May 2020 16:35:40,722 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-1451_2020-01-29_12-46-17.sky.zip; targetedms run ID 86959

11 May 2020 16:35:40,723 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,723 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80452/CPDR-FFPE-ID-1451_2020-01-29_12-46-17/CPDR-FFPE-ID-1451.skyd

11 May 2020 16:35:40,723 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1451_2020-01-29_12-46-17/CPDR-FFPE-ID-1451.skyd

11 May 2020 16:35:40,728 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,728 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80452/CPDR-FFPE-ID-1451_2020-01-29_12-46-17.sky.zip

11 May 2020 16:35:40,728 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1451_2020-01-29_12-46-17.sky.zip

11 May 2020 16:35:40,737 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-1397_2020-01-29_12-46-03.sky.zip; targetedms run ID 86958

11 May 2020 16:35:40,737 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,737 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80451/CPDR-FFPE-ID-1397_2020-01-29_12-46-03.sky.zip

11 May 2020 16:35:40,737 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1397_2020-01-29_12-46-03.sky.zip

11 May 2020 16:35:40,743 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,743 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80451/CPDR-FFPE-ID-1397_2020-01-29_12-46-03/CPDR-FFPE-ID-1397.skyd

11 May 2020 16:35:40,743 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1397_2020-01-29_12-46-03/CPDR-FFPE-ID-1397.skyd

11 May 2020 16:35:40,752 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-799_2020-01-29_12-37-51.sky.zip; targetedms run ID 86957

11 May 2020 16:35:40,753 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,753 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80428/CPDR-FFPE-ID-799_2020-01-29_12-37-51/CPDR-FFPE-ID-799.skyd

11 May 2020 16:35:40,753 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-799_2020-01-29_12-37-51/CPDR-FFPE-ID-799.skyd

11 May 2020 16:35:40,758 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,758 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80428/CPDR-FFPE-ID-799_2020-01-29_12-37-51.sky.zip

11 May 2020 16:35:40,758 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-799_2020-01-29_12-37-51.sky.zip

11 May 2020 16:35:40,766 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-821_2020-01-29_12-30-53.sky.zip; targetedms run ID 86956

11 May 2020 16:35:40,767 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,767 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80403/CPDR-FFPE-ID-821_2020-01-29_12-30-53.sky.zip

11 May 2020 16:35:40,767 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-821_2020-01-29_12-30-53.sky.zip

11 May 2020 16:35:40,773 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,773 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80403/CPDR-FFPE-ID-821_2020-01-29_12-30-53/CPDR-FFPE-ID-821.skyd

11 May 2020 16:35:40,773 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-821_2020-01-29_12-30-53/CPDR-FFPE-ID-821.skyd

11 May 2020 16:35:40,781 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-1293_2020-01-29_12-27-17.sky.zip; targetedms run ID 86955

11 May 2020 16:35:40,782 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,782 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80401/CPDR-FFPE-ID-1293_2020-01-29_12-27-17/CPDR-FFPE-ID-1293.skyd

11 May 2020 16:35:40,783 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1293_2020-01-29_12-27-17/CPDR-FFPE-ID-1293.skyd

11 May 2020 16:35:40,787 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,787 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80401/CPDR-FFPE-ID-1293_2020-01-29_12-27-17.sky.zip

11 May 2020 16:35:40,788 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1293_2020-01-29_12-27-17.sky.zip

11 May 2020 16:35:40,796 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-718_2020-01-29_12-26-03.sky.zip; targetedms run ID 86954

11 May 2020 16:35:40,797 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,797 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80397/CPDR-FFPE-ID-718_2020-01-29_12-26-03/CPDR-FFPE-ID-718.skyd

11 May 2020 16:35:40,797 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-718_2020-01-29_12-26-03/CPDR-FFPE-ID-718.skyd

11 May 2020 16:35:40,802 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,802 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80397/CPDR-FFPE-ID-718_2020-01-29_12-26-03.sky.zip

11 May 2020 16:35:40,802 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-718_2020-01-29_12-26-03.sky.zip

11 May 2020 16:35:40,810 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-695_2020-01-29_12-25-00.sky.zip; targetedms run ID 86953

11 May 2020 16:35:40,811 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,811 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80394/CPDR-FFPE-ID-695_2020-01-29_12-25-00.sky.zip

11 May 2020 16:35:40,811 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-695_2020-01-29_12-25-00.sky.zip

11 May 2020 16:35:40,817 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,817 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80394/CPDR-FFPE-ID-695_2020-01-29_12-25-00/CPDR-FFPE-ID-695.skyd

11 May 2020 16:35:40,817 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-695_2020-01-29_12-25-00/CPDR-FFPE-ID-695.skyd

11 May 2020 16:35:40,825 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-710_2020-01-29_12-24-40.sky.zip; targetedms run ID 86952

11 May 2020 16:35:40,827 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,827 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80393/CPDR-FFPE-ID-710_2020-01-29_12-24-40/CPDR-FFPE-ID-710.skyd

11 May 2020 16:35:40,827 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-710_2020-01-29_12-24-40/CPDR-FFPE-ID-710.skyd

11 May 2020 16:35:40,832 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,832 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80393/CPDR-FFPE-ID-710_2020-01-29_12-24-40.sky.zip

11 May 2020 16:35:40,832 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-710_2020-01-29_12-24-40.sky.zip

11 May 2020 16:35:40,840 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-985_2020-01-29_12-21-41.sky.zip; targetedms run ID 86951

11 May 2020 16:35:40,841 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,841 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80381/CPDR-FFPE-ID-985_2020-01-29_12-21-41.sky.zip

11 May 2020 16:35:40,841 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-985_2020-01-29_12-21-41.sky.zip

11 May 2020 16:35:40,846 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,846 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80381/CPDR-FFPE-ID-985_2020-01-29_12-21-41/CPDR-FFPE-ID-985.skyd

11 May 2020 16:35:40,847 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-985_2020-01-29_12-21-41/CPDR-FFPE-ID-985.skyd

11 May 2020 16:35:40,855 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-1260_2020-01-29_12-17-36.sky.zip; targetedms run ID 86950

11 May 2020 16:35:40,855 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,855 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80363/CPDR-FFPE-ID-1260_2020-01-29_12-17-36.sky.zip

11 May 2020 16:35:40,856 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1260_2020-01-29_12-17-36.sky.zip

11 May 2020 16:35:40,898 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,898 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80363/CPDR-FFPE-ID-1260_2020-01-29_12-17-36/CPDR-FFPE-ID-1260.skyd

11 May 2020 16:35:40,898 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1260_2020-01-29_12-17-36/CPDR-FFPE-ID-1260.skyd

11 May 2020 16:35:40,907 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-922_2020-01-29_12-15-14.sky.zip; targetedms run ID 86949

11 May 2020 16:35:40,907 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,908 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80353/CPDR-FFPE-ID-922_2020-01-29_12-15-14.sky.zip

11 May 2020 16:35:40,908 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-922_2020-01-29_12-15-14.sky.zip

11 May 2020 16:35:40,914 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,914 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80353/CPDR-FFPE-ID-922_2020-01-29_12-15-14/CPDR-FFPE-ID-922.skyd

11 May 2020 16:35:40,914 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-922_2020-01-29_12-15-14/CPDR-FFPE-ID-922.skyd

11 May 2020 16:35:40,923 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-731_2020-01-29_12-15-00.sky.zip; targetedms run ID 86948

11 May 2020 16:35:40,925 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,925 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80352/CPDR-FFPE-ID-731_2020-01-29_12-15-00/CPDR-FFPE-ID-731.skyd

11 May 2020 16:35:40,925 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-731_2020-01-29_12-15-00/CPDR-FFPE-ID-731.skyd

11 May 2020 16:35:40,930 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,930 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80352/CPDR-FFPE-ID-731_2020-01-29_12-15-00.sky.zip

11 May 2020 16:35:40,930 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-731_2020-01-29_12-15-00.sky.zip

11 May 2020 16:35:40,939 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-704_2020-01-29_12-21-56.sky.zip; targetedms run ID 86947

11 May 2020 16:35:40,939 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,939 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80382/CPDR-FFPE-ID-704_2020-01-29_12-21-56.sky.zip

11 May 2020 16:35:40,940 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-704_2020-01-29_12-21-56.sky.zip

11 May 2020 16:35:40,945 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,945 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80382/CPDR-FFPE-ID-704_2020-01-29_12-21-56/CPDR-FFPE-ID-704.skyd

11 May 2020 16:35:40,945 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-704_2020-01-29_12-21-56/CPDR-FFPE-ID-704.skyd

11 May 2020 16:35:40,954 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-756_2020-01-29_12-21-06.sky.zip; targetedms run ID 86946

11 May 2020 16:35:40,954 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,954 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80378/CPDR-FFPE-ID-756_2020-01-29_12-21-06.sky.zip

11 May 2020 16:35:40,955 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-756_2020-01-29_12-21-06.sky.zip

11 May 2020 16:35:40,960 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,960 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80378/CPDR-FFPE-ID-756_2020-01-29_12-21-06/CPDR-FFPE-ID-756.skyd

11 May 2020 16:35:40,960 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-756_2020-01-29_12-21-06/CPDR-FFPE-ID-756.skyd

11 May 2020 16:35:40,969 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-735_2020-01-29_12-20-53.sky.zip; targetedms run ID 86945

11 May 2020 16:35:40,969 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,969 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80377/CPDR-FFPE-ID-735_2020-01-29_12-20-53.sky.zip

11 May 2020 16:35:40,969 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-735_2020-01-29_12-20-53.sky.zip

11 May 2020 16:35:40,975 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,975 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80377/CPDR-FFPE-ID-735_2020-01-29_12-20-53/CPDR-FFPE-ID-735.skyd

11 May 2020 16:35:40,975 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-735_2020-01-29_12-20-53/CPDR-FFPE-ID-735.skyd

11 May 2020 16:35:40,984 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-847_2020-01-29_12-20-27.sky.zip; targetedms run ID 86944

11 May 2020 16:35:40,984 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,984 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80375/CPDR-FFPE-ID-847_2020-01-29_12-20-27.sky.zip

11 May 2020 16:35:40,985 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-847_2020-01-29_12-20-27.sky.zip

11 May 2020 16:35:40,990 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,990 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80375/CPDR-FFPE-ID-847_2020-01-29_12-20-27/CPDR-FFPE-ID-847.skyd

11 May 2020 16:35:40,990 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-847_2020-01-29_12-20-27/CPDR-FFPE-ID-847.skyd

11 May 2020 16:35:40,999 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-708_2020-01-29_12-20-14.sky.zip; targetedms run ID 86943

11 May 2020 16:35:40,999 INFO : Updating dataFileUrl...

11 May 2020 16:35:40,999 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80374/CPDR-FFPE-ID-708_2020-01-29_12-20-14.sky.zip

11 May 2020 16:35:40,999 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-708_2020-01-29_12-20-14.sky.zip

11 May 2020 16:35:41,005 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,005 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80374/CPDR-FFPE-ID-708_2020-01-29_12-20-14/CPDR-FFPE-ID-708.skyd

11 May 2020 16:35:41,005 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-708_2020-01-29_12-20-14/CPDR-FFPE-ID-708.skyd

11 May 2020 16:35:41,014 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-787_2020-01-29_12-19-37.sky.zip; targetedms run ID 86942

11 May 2020 16:35:41,014 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,015 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80372/CPDR-FFPE-ID-787_2020-01-29_12-19-37.sky.zip

11 May 2020 16:35:41,015 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-787_2020-01-29_12-19-37.sky.zip

11 May 2020 16:35:41,021 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,021 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80372/CPDR-FFPE-ID-787_2020-01-29_12-19-37/CPDR-FFPE-ID-787.skyd

11 May 2020 16:35:41,021 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-787_2020-01-29_12-19-37/CPDR-FFPE-ID-787.skyd

11 May 2020 16:35:41,030 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-1013_2020-01-29_12-18-17.sky.zip; targetedms run ID 86941

11 May 2020 16:35:41,030 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,031 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80366/CPDR-FFPE-ID-1013_2020-01-29_12-18-17.sky.zip

11 May 2020 16:35:41,031 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1013_2020-01-29_12-18-17.sky.zip

11 May 2020 16:35:41,036 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,037 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80366/CPDR-FFPE-ID-1013_2020-01-29_12-18-17/CPDR-FFPE-ID-1013.skyd

11 May 2020 16:35:41,037 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1013_2020-01-29_12-18-17/CPDR-FFPE-ID-1013.skyd

11 May 2020 16:35:41,045 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-1207_2020-01-29_12-17-49.sky.zip; targetedms run ID 86940

11 May 2020 16:35:41,047 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,047 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80364/CPDR-FFPE-ID-1207_2020-01-29_12-17-49/CPDR-FFPE-ID-1207.skyd

11 May 2020 16:35:41,047 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1207_2020-01-29_12-17-49/CPDR-FFPE-ID-1207.skyd

11 May 2020 16:35:41,052 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,052 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80364/CPDR-FFPE-ID-1207_2020-01-29_12-17-49.sky.zip

11 May 2020 16:35:41,052 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-1207_2020-01-29_12-17-49.sky.zip

11 May 2020 16:35:41,060 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-765_2020-01-29_12-17-22.sky.zip; targetedms run ID 86939

11 May 2020 16:35:41,061 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,061 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80362/CPDR-FFPE-ID-765_2020-01-29_12-17-22.sky.zip

11 May 2020 16:35:41,061 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-765_2020-01-29_12-17-22.sky.zip

11 May 2020 16:35:41,067 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,067 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80362/CPDR-FFPE-ID-765_2020-01-29_12-17-22/CPDR-FFPE-ID-765.skyd

11 May 2020 16:35:41,067 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-765_2020-01-29_12-17-22/CPDR-FFPE-ID-765.skyd

11 May 2020 16:35:41,075 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-435_2020-01-28_11-17-00.sky.zip; targetedms run ID 86815

11 May 2020 16:35:41,076 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,077 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80193/CPDR-FFPE-ID-435_2020-01-28_11-17-00/CPDR-FFPE-ID-435.skyd

11 May 2020 16:35:41,077 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-435_2020-01-28_11-17-00/CPDR-FFPE-ID-435.skyd

11 May 2020 16:35:41,082 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,082 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80193/CPDR-FFPE-ID-435_2020-01-28_11-17-00.sky.zip

11 May 2020 16:35:41,082 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-435_2020-01-28_11-17-00.sky.zip

11 May 2020 16:35:41,090 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-472_2020-01-28_11-20-52.sky.zip; targetedms run ID 86814

11 May 2020 16:35:41,091 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,091 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80209/CPDR-FFPE-ID-472_2020-01-28_11-20-52/CPDR-FFPE-ID-472.skyd

11 May 2020 16:35:41,092 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-472_2020-01-28_11-20-52/CPDR-FFPE-ID-472.skyd

11 May 2020 16:35:41,096 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,096 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80209/CPDR-FFPE-ID-472_2020-01-28_11-20-52.sky.zip

11 May 2020 16:35:41,097 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-472_2020-01-28_11-20-52.sky.zip

11 May 2020 16:35:41,105 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-462_2020-01-28_11-18-28.sky.zip; targetedms run ID 86813

11 May 2020 16:35:41,106 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,106 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80199/CPDR-FFPE-ID-462_2020-01-28_11-18-28/CPDR-FFPE-ID-462.skyd

11 May 2020 16:35:41,106 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-462_2020-01-28_11-18-28/CPDR-FFPE-ID-462.skyd

11 May 2020 16:35:41,111 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,111 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80199/CPDR-FFPE-ID-462_2020-01-28_11-18-28.sky.zip

11 May 2020 16:35:41,111 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-462_2020-01-28_11-18-28.sky.zip

11 May 2020 16:35:41,120 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-903_2020-01-29_12-15-45.sky.zip; targetedms run ID 86812

11 May 2020 16:35:41,120 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,120 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80355/CPDR-FFPE-ID-903_2020-01-29_12-15-45.sky.zip

11 May 2020 16:35:41,120 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-903_2020-01-29_12-15-45.sky.zip

11 May 2020 16:35:41,126 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,126 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80355/CPDR-FFPE-ID-903_2020-01-29_12-15-45/CPDR-FFPE-ID-903.skyd

11 May 2020 16:35:41,126 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-903_2020-01-29_12-15-45/CPDR-FFPE-ID-903.skyd

11 May 2020 16:35:41,134 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-904_2020-01-29_12-15-30.sky.zip; targetedms run ID 86811

11 May 2020 16:35:41,135 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,135 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80354/CPDR-FFPE-ID-904_2020-01-29_12-15-30.sky.zip

11 May 2020 16:35:41,135 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-904_2020-01-29_12-15-30.sky.zip

11 May 2020 16:35:41,141 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,141 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80354/CPDR-FFPE-ID-904_2020-01-29_12-15-30/CPDR-FFPE-ID-904.skyd

11 May 2020 16:35:41,141 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-904_2020-01-29_12-15-30/CPDR-FFPE-ID-904.skyd

11 May 2020 16:35:41,149 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-678_2020-01-29_12-14-31.sky.zip; targetedms run ID 86810

11 May 2020 16:35:41,150 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,150 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80350/CPDR-FFPE-ID-678_2020-01-29_12-14-31.sky.zip

11 May 2020 16:35:41,150 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-678_2020-01-29_12-14-31.sky.zip

11 May 2020 16:35:41,155 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,155 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80350/CPDR-FFPE-ID-678_2020-01-29_12-14-31/CPDR-FFPE-ID-678.skyd

11 May 2020 16:35:41,156 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-678_2020-01-29_12-14-31/CPDR-FFPE-ID-678.skyd

11 May 2020 16:35:41,206 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-611_2020-01-28_15-04-01.sky.zip; targetedms run ID 86809

11 May 2020 16:35:41,207 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,207 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80313/CPDR-FFPE-ID-611_2020-01-28_15-04-01/CPDR-FFPE-ID-611.skyd

11 May 2020 16:35:41,207 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-611_2020-01-28_15-04-01/CPDR-FFPE-ID-611.skyd

11 May 2020 16:35:41,213 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,213 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80313/CPDR-FFPE-ID-611_2020-01-28_15-04-01.sky.zip

11 May 2020 16:35:41,213 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-611_2020-01-28_15-04-01.sky.zip

11 May 2020 16:35:41,222 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-739_2020-01-28_13-48-14.sky.zip; targetedms run ID 86808

11 May 2020 16:35:41,222 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,223 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80305/CPDR-FFPE-ID-739_2020-01-28_13-48-14.sky.zip

11 May 2020 16:35:41,223 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-739_2020-01-28_13-48-14.sky.zip

11 May 2020 16:35:41,229 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,229 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80305/CPDR-FFPE-ID-739_2020-01-28_13-48-14/CPDR-FFPE-ID-739.skyd

11 May 2020 16:35:41,229 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-739_2020-01-28_13-48-14/CPDR-FFPE-ID-739.skyd

11 May 2020 16:35:41,238 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-777_2020-01-28_13-45-44.sky.zip; targetedms run ID 86807

11 May 2020 16:35:41,239 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,239 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80296/CPDR-FFPE-ID-777_2020-01-28_13-45-44/CPDR-FFPE-ID-777.skyd

11 May 2020 16:35:41,239 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-777_2020-01-28_13-45-44/CPDR-FFPE-ID-777.skyd

11 May 2020 16:35:41,244 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,245 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80296/CPDR-FFPE-ID-777_2020-01-28_13-45-44.sky.zip

11 May 2020 16:35:41,245 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-777_2020-01-28_13-45-44.sky.zip

11 May 2020 16:35:41,254 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-609_2020-01-28_13-40-41.sky.zip; targetedms run ID 86806

11 May 2020 16:35:41,254 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,254 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80276/CPDR-FFPE-ID-609_2020-01-28_13-40-41.sky.zip

11 May 2020 16:35:41,255 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-609_2020-01-28_13-40-41.sky.zip

11 May 2020 16:35:41,260 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,260 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80276/CPDR-FFPE-ID-609_2020-01-28_13-40-41/CPDR-FFPE-ID-609.skyd

11 May 2020 16:35:41,261 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-609_2020-01-28_13-40-41/CPDR-FFPE-ID-609.skyd

11 May 2020 16:35:41,270 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-717_2020-01-28_13-40-27.sky.zip; targetedms run ID 86805

11 May 2020 16:35:41,271 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,271 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80275/CPDR-FFPE-ID-717_2020-01-28_13-40-27/CPDR-FFPE-ID-717.skyd

11 May 2020 16:35:41,271 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-717_2020-01-28_13-40-27/CPDR-FFPE-ID-717.skyd

11 May 2020 16:35:41,276 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,277 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80275/CPDR-FFPE-ID-717_2020-01-28_13-40-27.sky.zip

11 May 2020 16:35:41,277 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-717_2020-01-28_13-40-27.sky.zip

11 May 2020 16:35:41,285 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-576_2020-01-28_13-36-02.sky.zip; targetedms run ID 86804

11 May 2020 16:35:41,287 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,287 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80263/CPDR-FFPE-ID-576_2020-01-28_13-36-02/CPDR-FFPE-ID-576.skyd

11 May 2020 16:35:41,287 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-576_2020-01-28_13-36-02/CPDR-FFPE-ID-576.skyd

11 May 2020 16:35:41,292 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,292 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80263/CPDR-FFPE-ID-576_2020-01-28_13-36-02.sky.zip

11 May 2020 16:35:41,292 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-576_2020-01-28_13-36-02.sky.zip

11 May 2020 16:35:41,301 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-682_2020-01-28_13-36-31.sky.zip; targetedms run ID 86803

11 May 2020 16:35:41,302 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,302 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80266/CPDR-FFPE-ID-682_2020-01-28_13-36-31.sky.zip

11 May 2020 16:35:41,302 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-682_2020-01-28_13-36-31.sky.zip

11 May 2020 16:35:41,308 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,308 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80266/CPDR-FFPE-ID-682_2020-01-28_13-36-31/CPDR-FFPE-ID-682.skyd

11 May 2020 16:35:41,308 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-682_2020-01-28_13-36-31/CPDR-FFPE-ID-682.skyd

11 May 2020 16:35:41,316 INFO : Updating dataFileUrls for run CPDR-FFPE-ID-734_2020-01-28_13-36-22.sky.zip; targetedms run ID 86802

11 May 2020 16:35:41,317 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,317 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80265/CPDR-FFPE-ID-734_2020-01-28_13-36-22.sky.zip

11 May 2020 16:35:41,317 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-734_2020-01-28_13-36-22.sky.zip

11 May 2020 16:35:41,322 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,322 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Batch2_16_proteins/xar/experiments_and_runs.xar.exploded/Run80265/CPDR-FFPE-ID-734_2020-01-28_13-36-22/CPDR-FFPE-ID-734.skyd

11 May 2020 16:35:41,323 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Batch2_16_proteins/@files/CPDR-FFPE-ID-734_2020-01-28_13-36-22/CPDR-FFPE-ID-734.skyd

11 May 2020 16:35:41,331 INFO : Updating dataFileUrls for run ResponseCurve-EGFR-LTQLGTFEDHFLSLQR_2020-01-28_09-46-19.sky.zip; targetedms run ID 87053

11 May 2020 16:35:41,331 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,331 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80034/ResponseCurve-EGFR-LTQLGTFEDHFLSLQR_2020-01-28_09-46-19/ResponseCurve-EGFR-LTQLGTFEDHFLSLQR.skyd

11 May 2020 16:35:41,332 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Response_Curve_16_proteins/@files/ResponseCurve-EGFR-LTQLGTFEDHFLSLQR_2020-01-28_09-46-19/ResponseCurve-EGFR-LTQLGTFEDHFLSLQR.skyd

11 May 2020 16:35:41,336 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,337 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80034/ResponseCurve-EGFR-LTQLGTFEDHFLSLQR_2020-01-28_09-46-19.sky.zip

11 May 2020 16:35:41,337 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Response_Curve_16_proteins/@files/ResponseCurve-EGFR-LTQLGTFEDHFLSLQR_2020-01-28_09-46-19.sky.zip

11 May 2020 16:35:41,354 INFO : Updating dataFileUrls for run ResponseCurve-CCND1-AYPDANLLNDR_2020-01-28_09-46-04.sky.zip; targetedms run ID 87052

11 May 2020 16:35:41,354 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,354 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80033/ResponseCurve-CCND1-AYPDANLLNDR_2020-01-28_09-46-04/ResponseCurve-CCND1-AYPDANLLNDR.skyd

11 May 2020 16:35:41,355 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Response_Curve_16_proteins/@files/ResponseCurve-CCND1-AYPDANLLNDR_2020-01-28_09-46-04/ResponseCurve-CCND1-AYPDANLLNDR.skyd

11 May 2020 16:35:41,359 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,359 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80033/ResponseCurve-CCND1-AYPDANLLNDR_2020-01-28_09-46-04.sky.zip

11 May 2020 16:35:41,360 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Response_Curve_16_proteins/@files/ResponseCurve-CCND1-AYPDANLLNDR_2020-01-28_09-46-04.sky.zip

11 May 2020 16:35:41,368 INFO : Updating dataFileUrls for run ResponseCurve-FOLH1-TYSVSFDSLFSAVK_2020-01-28_09-46-45.sky.zip; targetedms run ID 87051

11 May 2020 16:35:41,368 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,368 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80036/ResponseCurve-FOLH1-TYSVSFDSLFSAVK_2020-01-28_09-46-45.sky.zip

11 May 2020 16:35:41,369 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Response_Curve_16_proteins/@files/ResponseCurve-FOLH1-TYSVSFDSLFSAVK_2020-01-28_09-46-45.sky.zip

11 May 2020 16:35:41,374 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,374 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80036/ResponseCurve-FOLH1-TYSVSFDSLFSAVK_2020-01-28_09-46-45/ResponseCurve-FOLH1-TYSVSFDSLFSAVK.skyd

11 May 2020 16:35:41,374 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Response_Curve_16_proteins/@files/ResponseCurve-FOLH1-TYSVSFDSLFSAVK_2020-01-28_09-46-45/ResponseCurve-FOLH1-TYSVSFDSLFSAVK.skyd

11 May 2020 16:35:41,382 INFO : Updating dataFileUrls for run ResponseCurve-MUC1-DISEMFLQIYK_2020-01-28_09-47-16.sky.zip; targetedms run ID 87050

11 May 2020 16:35:41,383 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,383 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80038/ResponseCurve-MUC1-DISEMFLQIYK_2020-01-28_09-47-16/ResponseCurve-MUC1-DISEMFLQIYK.skyd

11 May 2020 16:35:41,384 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Response_Curve_16_proteins/@files/ResponseCurve-MUC1-DISEMFLQIYK_2020-01-28_09-47-16/ResponseCurve-MUC1-DISEMFLQIYK.skyd

11 May 2020 16:35:41,388 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,389 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80038/ResponseCurve-MUC1-DISEMFLQIYK_2020-01-28_09-47-16.sky.zip

11 May 2020 16:35:41,389 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Response_Curve_16_proteins/@files/ResponseCurve-MUC1-DISEMFLQIYK_2020-01-28_09-47-16.sky.zip

11 May 2020 16:35:41,398 INFO : Updating dataFileUrls for run ResponseCurve-PSA-LSEPAETDAVK_2020-01-28_09-47-42.sky.zip; targetedms run ID 87049

11 May 2020 16:35:41,398 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,398 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80040/ResponseCurve-PSA-LSEPAETDAVK_2020-01-28_09-47-42.sky.zip

11 May 2020 16:35:41,398 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Response_Curve_16_proteins/@files/ResponseCurve-PSA-LSEPAETDAVK_2020-01-28_09-47-42.sky.zip

11 May 2020 16:35:41,403 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,403 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80040/ResponseCurve-PSA-LSEPAETDAVK_2020-01-28_09-47-42/ResponseCurve-PSA-LSEPAETDAVK.skyd

11 May 2020 16:35:41,404 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Response_Curve_16_proteins/@files/ResponseCurve-PSA-LSEPAETDAVK_2020-01-28_09-47-42/ResponseCurve-PSA-LSEPAETDAVK.skyd

11 May 2020 16:35:41,610 INFO : Updating dataFileUrls for run ResponseCurve-SPINK1-QTSILIQK_2020-01-28_09-48-12.sky.zip; targetedms run ID 87048

11 May 2020 16:35:41,611 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,611 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80042/ResponseCurve-SPINK1-QTSILIQK_2020-01-28_09-48-12/ResponseCurve-SPINK1-QTSILIQK.skyd

11 May 2020 16:35:41,611 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Response_Curve_16_proteins/@files/ResponseCurve-SPINK1-QTSILIQK_2020-01-28_09-48-12/ResponseCurve-SPINK1-QTSILIQK.skyd

11 May 2020 16:35:41,616 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,616 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80042/ResponseCurve-SPINK1-QTSILIQK_2020-01-28_09-48-12.sky.zip

11 May 2020 16:35:41,617 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Response_Curve_16_proteins/@files/ResponseCurve-SPINK1-QTSILIQK_2020-01-28_09-48-12.sky.zip

11 May 2020 16:35:41,626 INFO : Updating dataFileUrls for run ResponseCurve-MMP9-LGLGADVAQVTGALR_2020-01-28_09-47-01.sky.zip; targetedms run ID 87047

11 May 2020 16:35:41,626 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,626 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80037/ResponseCurve-MMP9-LGLGADVAQVTGALR_2020-01-28_09-47-01.sky.zip

11 May 2020 16:35:41,626 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Response_Curve_16_proteins/@files/ResponseCurve-MMP9-LGLGADVAQVTGALR_2020-01-28_09-47-01.sky.zip

11 May 2020 16:35:41,632 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,632 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80037/ResponseCurve-MMP9-LGLGADVAQVTGALR_2020-01-28_09-47-01/ResponseCurve-MMP9-LGLGADVAQVTGALR.skyd

11 May 2020 16:35:41,632 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Response_Curve_16_proteins/@files/ResponseCurve-MMP9-LGLGADVAQVTGALR_2020-01-28_09-47-01/ResponseCurve-MMP9-LGLGADVAQVTGALR.skyd

11 May 2020 16:35:41,641 INFO : Updating dataFileUrls for run ResponseCurve-NCOA2-LLQDSSSPVDLAK_2020-01-28_09-47-28.sky.zip; targetedms run ID 87046

11 May 2020 16:35:41,641 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,641 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80039/ResponseCurve-NCOA2-LLQDSSSPVDLAK_2020-01-28_09-47-28.sky.zip

11 May 2020 16:35:41,642 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Response_Curve_16_proteins/@files/ResponseCurve-NCOA2-LLQDSSSPVDLAK_2020-01-28_09-47-28.sky.zip

11 May 2020 16:35:41,648 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,648 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80039/ResponseCurve-NCOA2-LLQDSSSPVDLAK_2020-01-28_09-47-28/ResponseCurve-NCOA2-LLQDSSSPVDLAK.skyd

11 May 2020 16:35:41,648 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Response_Curve_16_proteins/@files/ResponseCurve-NCOA2-LLQDSSSPVDLAK_2020-01-28_09-47-28/ResponseCurve-NCOA2-LLQDSSSPVDLAK.skyd

11 May 2020 16:35:41,657 INFO : Updating dataFileUrls for run ResponseCurve-SPRC-LEAGDHPVELLAR_2020-01-28_09-48-25.sky.zip; targetedms run ID 87045

11 May 2020 16:35:41,657 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,658 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80043/ResponseCurve-SPRC-LEAGDHPVELLAR_2020-01-28_09-48-25.sky.zip

11 May 2020 16:35:41,658 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Response_Curve_16_proteins/@files/ResponseCurve-SPRC-LEAGDHPVELLAR_2020-01-28_09-48-25.sky.zip

11 May 2020 16:35:41,663 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,663 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80043/ResponseCurve-SPRC-LEAGDHPVELLAR_2020-01-28_09-48-25/ResponseCurve-SPRC-LEAGDHPVELLAR.skyd

11 May 2020 16:35:41,664 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Response_Curve_16_proteins/@files/ResponseCurve-SPRC-LEAGDHPVELLAR_2020-01-28_09-48-25/ResponseCurve-SPRC-LEAGDHPVELLAR.skyd

11 May 2020 16:35:41,673 INFO : Updating dataFileUrls for run ResponseCurve-TGFB1-GGEIEGFR_2020-01-28_09-48-56.sky.zip; targetedms run ID 87044

11 May 2020 16:35:41,673 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,673 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80045/ResponseCurve-TGFB1-GGEIEGFR_2020-01-28_09-48-56.sky.zip

11 May 2020 16:35:41,673 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Response_Curve_16_proteins/@files/ResponseCurve-TGFB1-GGEIEGFR_2020-01-28_09-48-56.sky.zip

11 May 2020 16:35:41,679 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,679 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80045/ResponseCurve-TGFB1-GGEIEGFR_2020-01-28_09-48-56/ResponseCurve-TGFB1-GGEIEGFR.skyd

11 May 2020 16:35:41,679 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Response_Curve_16_proteins/@files/ResponseCurve-TGFB1-GGEIEGFR_2020-01-28_09-48-56/ResponseCurve-TGFB1-GGEIEGFR.skyd

11 May 2020 16:35:41,688 INFO : Updating dataFileUrls for run ResponseCurve-VEGFA-FMDVYQR_2020-01-28_09-49-13.sky.zip; targetedms run ID 87043

11 May 2020 16:35:41,689 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,689 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80046/ResponseCurve-VEGFA-FMDVYQR_2020-01-28_09-49-13/ResponseCurve-VEGFA-FMDVYQR.skyd

11 May 2020 16:35:41,689 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Response_Curve_16_proteins/@files/ResponseCurve-VEGFA-FMDVYQR_2020-01-28_09-49-13/ResponseCurve-VEGFA-FMDVYQR.skyd

11 May 2020 16:35:41,694 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,694 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80046/ResponseCurve-VEGFA-FMDVYQR_2020-01-28_09-49-13.sky.zip

11 May 2020 16:35:41,695 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Response_Curve_16_proteins/@files/ResponseCurve-VEGFA-FMDVYQR_2020-01-28_09-49-13.sky.zip

11 May 2020 16:35:41,713 INFO : Updating dataFileUrls for run ResponseCurve-CAMKK2-SLSAPGNLLTK_2020-01-28_09-45-49.sky.zip; targetedms run ID 87042

11 May 2020 16:35:41,713 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,713 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80032/ResponseCurve-CAMKK2-SLSAPGNLLTK_2020-01-28_09-45-49.sky.zip

11 May 2020 16:35:41,713 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Response_Curve_16_proteins/@files/ResponseCurve-CAMKK2-SLSAPGNLLTK_2020-01-28_09-45-49.sky.zip

11 May 2020 16:35:41,718 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,719 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80032/ResponseCurve-CAMKK2-SLSAPGNLLTK_2020-01-28_09-45-49/ResponseCurve-CAMKK2-SLSAPGNLLTK.skyd

11 May 2020 16:35:41,719 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Response_Curve_16_proteins/@files/ResponseCurve-CAMKK2-SLSAPGNLLTK_2020-01-28_09-45-49/ResponseCurve-CAMKK2-SLSAPGNLLTK.skyd

11 May 2020 16:35:41,728 INFO : Updating dataFileUrls for run ResponseCurve-ERG_pan-VIVPADPTLWSTDHVR_2020-01-28_09-46-32.sky.zip; targetedms run ID 87041

11 May 2020 16:35:41,728 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,728 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80035/ResponseCurve-ERG_pan-VIVPADPTLWSTDHVR_2020-01-28_09-46-32.sky.zip

11 May 2020 16:35:41,729 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Response_Curve_16_proteins/@files/ResponseCurve-ERG_pan-VIVPADPTLWSTDHVR_2020-01-28_09-46-32.sky.zip

11 May 2020 16:35:41,734 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,734 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80035/ResponseCurve-ERG_pan-VIVPADPTLWSTDHVR_2020-01-28_09-46-32/ResponseCurve-ERG_pan-VIVPADPTLWSTDHVR.skyd

11 May 2020 16:35:41,735 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Response_Curve_16_proteins/@files/ResponseCurve-ERG_pan-VIVPADPTLWSTDHVR_2020-01-28_09-46-32/ResponseCurve-ERG_pan-VIVPADPTLWSTDHVR.skyd

11 May 2020 16:35:41,744 INFO : Updating dataFileUrls for run ResponseCurve-SMAD4-YCQYAFDLK_2020-01-28_09-47-57.sky.zip; targetedms run ID 87040

11 May 2020 16:35:41,744 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,744 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80041/ResponseCurve-SMAD4-YCQYAFDLK_2020-01-28_09-47-57.sky.zip

11 May 2020 16:35:41,745 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Response_Curve_16_proteins/@files/ResponseCurve-SMAD4-YCQYAFDLK_2020-01-28_09-47-57.sky.zip

11 May 2020 16:35:41,750 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,750 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80041/ResponseCurve-SMAD4-YCQYAFDLK_2020-01-28_09-47-57/ResponseCurve-SMAD4-YCQYAFDLK.skyd

11 May 2020 16:35:41,750 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Response_Curve_16_proteins/@files/ResponseCurve-SMAD4-YCQYAFDLK_2020-01-28_09-47-57/ResponseCurve-SMAD4-YCQYAFDLK.skyd

11 May 2020 16:35:41,759 INFO : Updating dataFileUrls for run ResponseCurve-TFF3-VDCGYPHVTPK_2020-01-28_09-48-41.sky.zip; targetedms run ID 87039

11 May 2020 16:35:41,759 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,760 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80044/ResponseCurve-TFF3-VDCGYPHVTPK_2020-01-28_09-48-41.sky.zip

11 May 2020 16:35:41,760 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Response_Curve_16_proteins/@files/ResponseCurve-TFF3-VDCGYPHVTPK_2020-01-28_09-48-41.sky.zip

11 May 2020 16:35:41,765 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,765 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80044/ResponseCurve-TFF3-VDCGYPHVTPK_2020-01-28_09-48-41/ResponseCurve-TFF3-VDCGYPHVTPK.skyd

11 May 2020 16:35:41,766 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Response_Curve_16_proteins/@files/ResponseCurve-TFF3-VDCGYPHVTPK_2020-01-28_09-48-41/ResponseCurve-TFF3-VDCGYPHVTPK.skyd

11 May 2020 16:35:41,775 INFO : Updating dataFileUrls for run ResponseCurve-ANXA2-GLGTDEDSLIEIICSR_2020-01-28_09-49-31.sky.zip; targetedms run ID 87038

11 May 2020 16:35:41,775 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,775 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80047/ResponseCurve-ANXA2-GLGTDEDSLIEIICSR_2020-01-28_09-49-31.sky.zip

11 May 2020 16:35:41,775 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Response_Curve_16_proteins/@files/ResponseCurve-ANXA2-GLGTDEDSLIEIICSR_2020-01-28_09-49-31.sky.zip

11 May 2020 16:35:41,780 INFO : Updating dataFileUrl...

11 May 2020 16:35:41,781 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/PNNL%20-%20Prostate_Biomarker_PNNL_2019_5731e0ed-7602-1038-92a8-3013bb9ba73d/_temp__2020-05-11_15-12-56/export/subfolders/Response_Curve_16_proteins/xar/experiments_and_runs.xar.exploded/Run80047/ResponseCurve-ANXA2-GLGTDEDSLIEIICSR_2020-01-28_09-49-31/ResponseCurve-ANXA2-GLGTDEDSLIEIICSR.skyd

11 May 2020 16:35:41,781 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Prostate_Biomarker_PNNL_2019/Response_Curve_16_proteins/@files/ResponseCurve-ANXA2-GLGTDEDSLIEIICSR_2020-01-28_09-49-31/ResponseCurve-ANXA2-GLGTDEDSLIEIICSR.skyd

11 May 2020 16:35:41,790 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'