30 Mar 2019 23:30:30,328 INFO : Copying experiment "Regulated Phosphosignaling Associated with Breast Cancer Subtypes and Druggability" from folder /PNNL/Kinase-substrate pair study in breast cancer to /Panorama Public/2019/PNNL - Kinase-substrate pair study in breast cancer
30 Mar 2019 23:30:30,328 INFO : =======================================
30 Mar 2019 23:30:30,591 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
30 Mar 2019 23:30:30,591 INFO :
30 Mar 2019 23:30:30,592 INFO : Exporting experiment.
30 Mar 2019 23:30:52,233 INFO :
30 Mar 2019 23:30:52,234 INFO : Experiment export completed successfully.
30 Mar 2019 23:30:52,234 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentExportTask'
30 Mar 2019 23:30:52,364 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
30 Mar 2019 23:30:52,364 INFO :
30 Mar 2019 23:30:52,364 INFO : Importing experiment.
30 Mar 2019 23:30:52,380 INFO : Loading folder properties (folder type, settings and active modules)
30 Mar 2019 23:30:52,569 INFO : Done importing folder properties (folder type, settings and active modules)
30 Mar 2019 23:30:52,579 INFO : Loading xar
30 Mar 2019 23:30:55,112 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-5195:TargetedMS.ImportSkyZip'
30 Mar 2019 23:30:55,116 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-5195:TargetedMS.ImportSkyZip.Core'
30 Mar 2019 23:30:55,119 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-5195:TargetedMS.ImportSkyZip.Output'
30 Mar 2019 23:30:55,119 DEBUG: Protocol import complete
30 Mar 2019 23:30:55,121 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-5195:Regulated+Phosphosignaling+Associated+with+Breast+Cancer+Subtypes+and+Druggability'
30 Mar 2019 23:30:55,121 DEBUG: Experiment/Run group import complete
30 Mar 2019 23:30:55,153 DEBUG: Protocol action set import complete
30 Mar 2019 23:30:55,167 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5195:TargetedMS.ImportSkyZip'
30 Mar 2019 23:30:55,221 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-5195:cfa3fe94-2ef3-1037-9cdc-3013bb9b7f98'
30 Mar 2019 23:30:55,235 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-5195:cfa3fe6b-2ef3-1037-9cdc-3013bb9b7f98'
30 Mar 2019 23:30:55,235 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5195:TargetedMS.ImportSkyZip.Core'
30 Mar 2019 23:30:55,245 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5195:TargetedMS.ImportSkyZip.Output'
30 Mar 2019 23:30:55,247 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-5195:cfa3feb8-2ef3-1037-9cdc-3013bb9b7f98'
30 Mar 2019 23:30:55,263 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5195:TargetedMS.ImportSkyZip'
30 Mar 2019 23:30:55,280 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-5195:cfa40111-2ef3-1037-9cdc-3013bb9b7f98'
30 Mar 2019 23:30:55,293 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-5195:cfa400ef-2ef3-1037-9cdc-3013bb9b7f98'
30 Mar 2019 23:30:55,293 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5195:TargetedMS.ImportSkyZip.Core'
30 Mar 2019 23:30:55,301 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5195:TargetedMS.ImportSkyZip.Output'
30 Mar 2019 23:30:55,302 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-5195:cfa4017a-2ef3-1037-9cdc-3013bb9b7f98'
30 Mar 2019 23:30:55,320 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5195:TargetedMS.ImportSkyZip'
30 Mar 2019 23:30:55,335 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-5195:e5ae75e6-2ef6-1037-9cdc-3013bb9b7f98'
30 Mar 2019 23:30:55,348 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-5195:e5ae6c26-2ef6-1037-9cdc-3013bb9b7f98'
30 Mar 2019 23:30:55,349 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5195:TargetedMS.ImportSkyZip.Core'
30 Mar 2019 23:30:55,356 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5195:TargetedMS.ImportSkyZip.Output'
30 Mar 2019 23:30:55,357 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-5195:e5ae75fc-2ef6-1037-9cdc-3013bb9b7f98'
30 Mar 2019 23:30:55,372 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5195:TargetedMS.ImportSkyZip'
30 Mar 2019 23:30:55,387 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-5195:fd036a7a-314d-1037-9cdc-3013bb9b7f98'
30 Mar 2019 23:30:55,400 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-5195:fd036a5e-314d-1037-9cdc-3013bb9b7f98'
30 Mar 2019 23:30:55,400 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5195:TargetedMS.ImportSkyZip.Core'
30 Mar 2019 23:30:55,409 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5195:TargetedMS.ImportSkyZip.Output'
30 Mar 2019 23:30:55,410 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-5195:fd036afc-314d-1037-9cdc-3013bb9b7f98'
30 Mar 2019 23:30:55,426 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5195:TargetedMS.ImportSkyZip'
30 Mar 2019 23:30:55,441 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-5195:8bab005d-32fd-1037-a72b-3013bb9b836c'
30 Mar 2019 23:30:55,454 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-5195:8bab0035-32fd-1037-a72b-3013bb9b836c'
30 Mar 2019 23:30:55,454 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5195:TargetedMS.ImportSkyZip.Core'
30 Mar 2019 23:30:55,461 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5195:TargetedMS.ImportSkyZip.Output'
30 Mar 2019 23:30:55,462 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-5195:8bab009f-32fd-1037-a72b-3013bb9b836c'
30 Mar 2019 23:30:55,477 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5195:TargetedMS.ImportSkyZip'
30 Mar 2019 23:30:55,492 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-5195:86b26d2e-0265-1037-af1e-3013bb9b1d59'
30 Mar 2019 23:30:55,504 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-5195:86b26d1a-0265-1037-af1e-3013bb9b1d59'
30 Mar 2019 23:30:55,505 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5195:TargetedMS.ImportSkyZip.Core'
30 Mar 2019 23:30:55,511 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5195:TargetedMS.ImportSkyZip.Output'
30 Mar 2019 23:30:55,513 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-5195:86b26d48-0265-1037-af1e-3013bb9b1d59'
30 Mar 2019 23:30:55,516 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/export/xar/experiments_and_runs.xar.exploded/Run59811/EGFR-un-modified-reverse%20curve-20190321_2019-03-22_10-21-20/EGFR-un-modified-reverse%20curve-20190321.skyd into the system
30 Mar 2019 23:30:55,518 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/export/xar/experiments_and_runs.xar.exploded/Run59811/EGFR-un-modified-reverse%20curve-20190321_2019-03-22_10-21-20/EGFR-un-modified-reverse%20curve-20190321.skyd into the system
30 Mar 2019 23:30:55,518 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/export/xar/experiments_and_runs.xar.exploded/Run59811/EGFR-un-modified-reverse%20curve-20190321_2019-03-22_10-21-20.sky.zip into the system
30 Mar 2019 23:30:55,523 INFO : Starting import from EGFR-un-modified-reverse curve-20190321_2019-03-22_10-21-20.sky.zip
30 Mar 2019 23:30:55,537 INFO : Starting to import Skyline document from EGFR-un-modified-reverse curve-20190321_2019-03-22_10-21-20.sky.zip
30 Mar 2019 23:30:55,550 INFO : Expanding PepList_Lib.blib
30 Mar 2019 23:30:55,551 INFO : Expanding EGFR-un-modified-reverse curve-20190321.skyd
30 Mar 2019 23:30:55,983 INFO : Expanding EGFR-un-modified-reverse curve-20190321.sky.view
30 Mar 2019 23:30:55,984 INFO : Expanding EGFR-un-modified-reverse curve-20190321.sky
30 Mar 2019 23:30:55,989 WARN : The version of this Skyline document is 4.2. This is newer than the highest supported version 4.1
30 Mar 2019 23:30:56,310 INFO : Inserting EGFR_HUMAN
30 Mar 2019 23:30:57,151 INFO : Total peptides inserted: 1
30 Mar 2019 23:30:59,418 INFO : Completed import of Skyline document from EGFR-un-modified-reverse curve-20190321_2019-03-22_10-21-20.sky.zip
30 Mar 2019 23:30:59,423 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/export/xar/experiments_and_runs.xar.exploded/Run59811/EGFR-un-modified-reverse%20curve-20190321_2019-03-22_10-21-20.sky.zip into the system
30 Mar 2019 23:30:59,423 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/export/xar/experiments_and_runs.xar.exploded/Run59812/EGFR-phosphopeptides-reverse%20curve-20190321_2019-03-22_10-24-28/EGFR-phosphopeptides-reverse%20curve-20190321.skyd into the system
30 Mar 2019 23:30:59,424 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/export/xar/experiments_and_runs.xar.exploded/Run59812/EGFR-phosphopeptides-reverse%20curve-20190321_2019-03-22_10-24-28/EGFR-phosphopeptides-reverse%20curve-20190321.skyd into the system
30 Mar 2019 23:30:59,424 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/export/xar/experiments_and_runs.xar.exploded/Run59812/EGFR-phosphopeptides-reverse%20curve-20190321_2019-03-22_10-24-28.sky.zip into the system
30 Mar 2019 23:30:59,427 INFO : Starting import from EGFR-phosphopeptides-reverse curve-20190321_2019-03-22_10-24-28.sky.zip
30 Mar 2019 23:30:59,435 INFO : Starting to import Skyline document from EGFR-phosphopeptides-reverse curve-20190321_2019-03-22_10-24-28.sky.zip
30 Mar 2019 23:30:59,443 INFO : Expanding PepList_Lib.blib
30 Mar 2019 23:30:59,444 INFO : Expanding EGFR-phosphopeptides-reverse curve-20190321.skyd
30 Mar 2019 23:30:59,718 INFO : Expanding EGFR-phosphopeptides-reverse curve-20190321.sky.view
30 Mar 2019 23:30:59,719 INFO : Expanding EGFR-phosphopeptides-reverse curve-20190321.sky
30 Mar 2019 23:30:59,724 WARN : The version of this Skyline document is 4.2. This is newer than the highest supported version 4.1
30 Mar 2019 23:31:00,060 INFO : Inserting EGFR_HUMAN
30 Mar 2019 23:31:03,082 INFO : Total peptides inserted: 2
30 Mar 2019 23:31:05,330 INFO : Completed import of Skyline document from EGFR-phosphopeptides-reverse curve-20190321_2019-03-22_10-24-28.sky.zip
30 Mar 2019 23:31:05,337 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/export/xar/experiments_and_runs.xar.exploded/Run59812/EGFR-phosphopeptides-reverse%20curve-20190321_2019-03-22_10-24-28.sky.zip into the system
30 Mar 2019 23:31:05,337 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/export/xar/experiments_and_runs.xar.exploded/Run59814/EGFR_un-modified-peptide_11breast%20cancer%20samples_2019-03-22_10-38-35/EGFR_un-modified-peptide_11breast%20cancer%20samples.skyd into the system
30 Mar 2019 23:31:05,338 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/export/xar/experiments_and_runs.xar.exploded/Run59814/EGFR_un-modified-peptide_11breast%20cancer%20samples_2019-03-22_10-38-35/EGFR_un-modified-peptide_11breast%20cancer%20samples.skyd into the system
30 Mar 2019 23:31:05,338 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/export/xar/experiments_and_runs.xar.exploded/Run59814/EGFR_un-modified-peptide_11breast%20cancer%20samples_2019-03-22_10-38-35.sky.zip into the system
30 Mar 2019 23:31:05,341 INFO : Starting import from EGFR_un-modified-peptide_11breast cancer samples_2019-03-22_10-38-35.sky.zip
30 Mar 2019 23:31:05,347 INFO : Starting to import Skyline document from EGFR_un-modified-peptide_11breast cancer samples_2019-03-22_10-38-35.sky.zip
30 Mar 2019 23:31:05,350 INFO : Expanding PepList_Lib.blib
30 Mar 2019 23:31:05,350 INFO : Expanding EGFR_un-modified-peptide_11breast cancer samples.skyd
30 Mar 2019 23:31:05,399 INFO : Expanding EGFR_un-modified-peptide_11breast cancer samples.sky.view
30 Mar 2019 23:31:05,399 INFO : Expanding EGFR_un-modified-peptide_11breast cancer samples.sky
30 Mar 2019 23:31:05,401 WARN : The version of this Skyline document is 4.2. This is newer than the highest supported version 4.1
30 Mar 2019 23:31:05,510 INFO : Inserting EGFR_HUMAN
30 Mar 2019 23:31:05,601 INFO : Total peptides inserted: 1
30 Mar 2019 23:31:05,611 INFO : Completed import of Skyline document from EGFR_un-modified-peptide_11breast cancer samples_2019-03-22_10-38-35.sky.zip
30 Mar 2019 23:31:05,616 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/export/xar/experiments_and_runs.xar.exploded/Run59814/EGFR_un-modified-peptide_11breast%20cancer%20samples_2019-03-22_10-38-35.sky.zip into the system
30 Mar 2019 23:31:05,616 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/export/xar/experiments_and_runs.xar.exploded/Run59982/Phospho_inter-day_2019-03-25_10-51-54/Phospho_inter-day.skyd into the system
30 Mar 2019 23:31:05,617 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/export/xar/experiments_and_runs.xar.exploded/Run59982/Phospho_inter-day_2019-03-25_10-51-54/Phospho_inter-day.skyd into the system
30 Mar 2019 23:31:05,617 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/export/xar/experiments_and_runs.xar.exploded/Run59982/Phospho_inter-day_2019-03-25_10-51-54.sky.zip into the system
30 Mar 2019 23:31:05,619 INFO : Starting import from Phospho_inter-day_2019-03-25_10-51-54.sky.zip
30 Mar 2019 23:31:05,623 INFO : Starting to import Skyline document from Phospho_inter-day_2019-03-25_10-51-54.sky.zip
30 Mar 2019 23:31:05,634 INFO : Expanding PepList_Lib.blib
30 Mar 2019 23:31:05,635 INFO : Expanding Phospho_inter-day.skyd
30 Mar 2019 23:31:06,369 INFO : Expanding Phospho_inter-day.sky.view
30 Mar 2019 23:31:06,370 INFO : Expanding Phospho_inter-day.sky
30 Mar 2019 23:31:06,373 WARN : The version of this Skyline document is 4.2. This is newer than the highest supported version 4.1
30 Mar 2019 23:31:06,501 INFO : Inserting EGFR_HUMAN
30 Mar 2019 23:31:10,349 INFO : Total peptides inserted: 2
30 Mar 2019 23:31:12,683 INFO : Completed import of Skyline document from Phospho_inter-day_2019-03-25_10-51-54.sky.zip
30 Mar 2019 23:31:12,690 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/export/xar/experiments_and_runs.xar.exploded/Run59982/Phospho_inter-day_2019-03-25_10-51-54.sky.zip into the system
30 Mar 2019 23:31:12,690 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/export/xar/experiments_and_runs.xar.exploded/Run60135/Um-modified-peptide_inter-day_2019-03-27_13-35-56/Um-modified-peptide_inter-day.skyd into the system
30 Mar 2019 23:31:12,692 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/export/xar/experiments_and_runs.xar.exploded/Run60135/Um-modified-peptide_inter-day_2019-03-27_13-35-56/Um-modified-peptide_inter-day.skyd into the system
30 Mar 2019 23:31:12,692 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/export/xar/experiments_and_runs.xar.exploded/Run60135/Um-modified-peptide_inter-day_2019-03-27_13-35-56.sky.zip into the system
30 Mar 2019 23:31:12,695 INFO : Starting import from Um-modified-peptide_inter-day_2019-03-27_13-35-56.sky.zip
30 Mar 2019 23:31:12,703 INFO : Starting to import Skyline document from Um-modified-peptide_inter-day_2019-03-27_13-35-56.sky.zip
30 Mar 2019 23:31:12,714 INFO : Expanding PepList_Lib.blib
30 Mar 2019 23:31:12,714 INFO : Expanding Um-modified-peptide_inter-day.skyd
30 Mar 2019 23:31:13,060 INFO : Expanding Um-modified-peptide_inter-day.sky.view
30 Mar 2019 23:31:13,060 INFO : Expanding Um-modified-peptide_inter-day.sky
30 Mar 2019 23:31:13,063 WARN : The version of this Skyline document is 4.2. This is newer than the highest supported version 4.1
30 Mar 2019 23:31:13,312 INFO : Inserting EGFR_HUMAN
30 Mar 2019 23:31:14,542 INFO : Total peptides inserted: 1
30 Mar 2019 23:31:16,820 INFO : Completed import of Skyline document from Um-modified-peptide_inter-day_2019-03-27_13-35-56.sky.zip
30 Mar 2019 23:31:16,828 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/export/xar/experiments_and_runs.xar.exploded/Run60135/Um-modified-peptide_inter-day_2019-03-27_13-35-56.sky.zip into the system
30 Mar 2019 23:31:16,828 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/export/xar/experiments_and_runs.xar.exploded/Run46408/Breast_Phospho_EGFR_two%20peptides_2019-01-24_16-30-12/Breast_Phospho_EGFR_two%20peptides.skyd into the system
30 Mar 2019 23:31:16,829 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/export/xar/experiments_and_runs.xar.exploded/Run46408/Breast_Phospho_EGFR_two%20peptides_2019-01-24_16-30-12/Breast_Phospho_EGFR_two%20peptides.skyd into the system
30 Mar 2019 23:31:16,830 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/export/xar/experiments_and_runs.xar.exploded/Run46408/Breast_Phospho_EGFR_two%20peptides_2019-01-24_16-30-12.sky.zip into the system
30 Mar 2019 23:31:16,833 INFO : Starting import from Breast_Phospho_EGFR_two peptides_2019-01-24_16-30-12.sky.zip
30 Mar 2019 23:31:16,840 INFO : Starting to import Skyline document from Breast_Phospho_EGFR_two peptides_2019-01-24_16-30-12.sky.zip
30 Mar 2019 23:31:16,842 INFO : Expanding PepList_Lib.blib
30 Mar 2019 23:31:16,842 INFO : Expanding Breast_Phospho_EGFR_two peptides.skyd
30 Mar 2019 23:31:16,871 INFO : Expanding Breast_Phospho_EGFR_two peptides.sky.view
30 Mar 2019 23:31:16,871 INFO : Expanding Breast_Phospho_EGFR_two peptides.sky
30 Mar 2019 23:31:16,873 WARN : The version of this Skyline document is 4.2. This is newer than the highest supported version 4.1
30 Mar 2019 23:31:17,011 INFO : Inserting EGFR_HUMAN
30 Mar 2019 23:31:17,247 INFO : Total peptides inserted: 2
30 Mar 2019 23:31:19,440 INFO : Completed import of Skyline document from Breast_Phospho_EGFR_two peptides_2019-01-24_16-30-12.sky.zip
30 Mar 2019 23:31:19,445 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/export/xar/experiments_and_runs.xar.exploded/Run46408/Breast_Phospho_EGFR_two%20peptides_2019-01-24_16-30-12.sky.zip into the system
30 Mar 2019 23:31:19,507 INFO : Done importing xar
30 Mar 2019 23:31:19,510 INFO : Loading wikis
30 Mar 2019 23:31:19,513 INFO : 0 wikis imported
30 Mar 2019 23:31:19,513 INFO : Done importing wikis
30 Mar 2019 23:31:20,496 INFO : Loading pages and webpart properties
30 Mar 2019 23:31:20,526 INFO : Done importing pages and webpart properties
30 Mar 2019 23:31:20,527 INFO :
30 Mar 2019 23:31:20,527 INFO : Experiment import completed successfully.
30 Mar 2019 23:31:20,527 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentImportTask'
30 Mar 2019 23:31:20,603 INFO : Starting to run task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
30 Mar 2019 23:31:20,603 INFO :
30 Mar 2019 23:31:20,603 INFO : Finishing up experiment copy.
30 Mar 2019 23:31:20,605 INFO : Creating a new TargetedMS experiment entry in targetedms.ExperimentAnnotations.
30 Mar 2019 23:31:20,665 INFO : Updating access URL to point to the new copy of the data.
30 Mar 2019 23:31:20,669 INFO : Setting the 'copied' timestamp on the JournalExperiment table.
30 Mar 2019 23:31:20,671 INFO : Removing copy permissions given to journal.
30 Mar 2019 23:31:20,685 INFO : Adding read permissions to all users that are folder admins in the source container.
30 Mar 2019 23:31:20,698 INFO : Setting the TargetedMS folder type to 'Experimental Data'
30 Mar 2019 23:31:20,704 INFO : Updating the 'Raw Data' tab configuration
30 Mar 2019 23:31:20,709 INFO : Updating dataFileUrls for run EGFR-un-modified-reverse curve-20190321_2019-03-22_10-21-20.sky.zip; targetedms run ID 60863
30 Mar 2019 23:31:20,709 INFO : Updating dataFileUrl...
30 Mar 2019 23:31:20,709 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/export/xar/experiments_and_runs.xar.exploded/Run59811/EGFR-un-modified-reverse%20curve-20190321_2019-03-22_10-21-20/EGFR-un-modified-reverse%20curve-20190321.skyd
30 Mar 2019 23:31:20,709 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/EGFR-un-modified-reverse%20curve-20190321_2019-03-22_10-21-20/EGFR-un-modified-reverse%20curve-20190321.skyd
30 Mar 2019 23:31:20,714 INFO : Updating dataFileUrl...
30 Mar 2019 23:31:20,714 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/export/xar/experiments_and_runs.xar.exploded/Run59811/EGFR-un-modified-reverse%20curve-20190321_2019-03-22_10-21-20.sky.zip
30 Mar 2019 23:31:20,714 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/EGFR-un-modified-reverse%20curve-20190321_2019-03-22_10-21-20.sky.zip
30 Mar 2019 23:31:20,723 INFO : Updating dataFileUrls for run EGFR-phosphopeptides-reverse curve-20190321_2019-03-22_10-24-28.sky.zip; targetedms run ID 60864
30 Mar 2019 23:31:20,724 INFO : Updating dataFileUrl...
30 Mar 2019 23:31:20,724 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/export/xar/experiments_and_runs.xar.exploded/Run59812/EGFR-phosphopeptides-reverse%20curve-20190321_2019-03-22_10-24-28.sky.zip
30 Mar 2019 23:31:20,724 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/EGFR-phosphopeptides-reverse%20curve-20190321_2019-03-22_10-24-28.sky.zip
30 Mar 2019 23:31:20,727 INFO : Updating dataFileUrl...
30 Mar 2019 23:31:20,727 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/export/xar/experiments_and_runs.xar.exploded/Run59812/EGFR-phosphopeptides-reverse%20curve-20190321_2019-03-22_10-24-28/EGFR-phosphopeptides-reverse%20curve-20190321.skyd
30 Mar 2019 23:31:20,727 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/EGFR-phosphopeptides-reverse%20curve-20190321_2019-03-22_10-24-28/EGFR-phosphopeptides-reverse%20curve-20190321.skyd
30 Mar 2019 23:31:20,732 INFO : Updating dataFileUrls for run EGFR_un-modified-peptide_11breast cancer samples_2019-03-22_10-38-35.sky.zip; targetedms run ID 60865
30 Mar 2019 23:31:20,733 INFO : Updating dataFileUrl...
30 Mar 2019 23:31:20,733 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/export/xar/experiments_and_runs.xar.exploded/Run59814/EGFR_un-modified-peptide_11breast%20cancer%20samples_2019-03-22_10-38-35/EGFR_un-modified-peptide_11breast%20cancer%20samples.skyd
30 Mar 2019 23:31:20,733 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/EGFR_un-modified-peptide_11breast%20cancer%20samples_2019-03-22_10-38-35/EGFR_un-modified-peptide_11breast%20cancer%20samples.skyd
30 Mar 2019 23:31:20,736 INFO : Updating dataFileUrl...
30 Mar 2019 23:31:20,736 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/export/xar/experiments_and_runs.xar.exploded/Run59814/EGFR_un-modified-peptide_11breast%20cancer%20samples_2019-03-22_10-38-35.sky.zip
30 Mar 2019 23:31:20,736 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/EGFR_un-modified-peptide_11breast%20cancer%20samples_2019-03-22_10-38-35.sky.zip
30 Mar 2019 23:31:20,741 INFO : Updating dataFileUrls for run Phospho_inter-day_2019-03-25_10-51-54.sky.zip; targetedms run ID 60866
30 Mar 2019 23:31:20,741 INFO : Updating dataFileUrl...
30 Mar 2019 23:31:20,742 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/export/xar/experiments_and_runs.xar.exploded/Run59982/Phospho_inter-day_2019-03-25_10-51-54.sky.zip
30 Mar 2019 23:31:20,742 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/Phospho_inter-day_2019-03-25_10-51-54.sky.zip
30 Mar 2019 23:31:20,745 INFO : Updating dataFileUrl...
30 Mar 2019 23:31:20,745 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/export/xar/experiments_and_runs.xar.exploded/Run59982/Phospho_inter-day_2019-03-25_10-51-54/Phospho_inter-day.skyd
30 Mar 2019 23:31:20,745 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/Phospho_inter-day_2019-03-25_10-51-54/Phospho_inter-day.skyd
30 Mar 2019 23:31:20,750 INFO : Updating dataFileUrls for run Um-modified-peptide_inter-day_2019-03-27_13-35-56.sky.zip; targetedms run ID 60867
30 Mar 2019 23:31:20,750 INFO : Updating dataFileUrl...
30 Mar 2019 23:31:20,751 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/export/xar/experiments_and_runs.xar.exploded/Run60135/Um-modified-peptide_inter-day_2019-03-27_13-35-56/Um-modified-peptide_inter-day.skyd
30 Mar 2019 23:31:20,751 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/Um-modified-peptide_inter-day_2019-03-27_13-35-56/Um-modified-peptide_inter-day.skyd
30 Mar 2019 23:31:20,754 INFO : Updating dataFileUrl...
30 Mar 2019 23:31:20,754 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/export/xar/experiments_and_runs.xar.exploded/Run60135/Um-modified-peptide_inter-day_2019-03-27_13-35-56.sky.zip
30 Mar 2019 23:31:20,754 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/Um-modified-peptide_inter-day_2019-03-27_13-35-56.sky.zip
30 Mar 2019 23:31:20,759 INFO : Updating dataFileUrls for run Breast_Phospho_EGFR_two peptides_2019-01-24_16-30-12.sky.zip; targetedms run ID 60868
30 Mar 2019 23:31:20,759 INFO : Updating dataFileUrl...
30 Mar 2019 23:31:20,759 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/export/xar/experiments_and_runs.xar.exploded/Run46408/Breast_Phospho_EGFR_two%20peptides_2019-01-24_16-30-12.sky.zip
30 Mar 2019 23:31:20,760 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/Breast_Phospho_EGFR_two%20peptides_2019-01-24_16-30-12.sky.zip
30 Mar 2019 23:31:20,763 INFO : Updating dataFileUrl...
30 Mar 2019 23:31:20,763 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/export/xar/experiments_and_runs.xar.exploded/Run46408/Breast_Phospho_EGFR_two%20peptides_2019-01-24_16-30-12/Breast_Phospho_EGFR_two%20peptides.skyd
30 Mar 2019 23:31:20,763 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/PNNL%20-%20Kinase-substrate%20pair%20study%20in%20breast%20cancer/@files/Breast_Phospho_EGFR_two%20peptides_2019-01-24_16-30-12/Breast_Phospho_EGFR_two%20peptides.skyd
30 Mar 2019 23:31:21,079 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask'