31 May 2019 11:14:17,801 INFO : Copying experiment "Screening a Resource of Recombinant Protein Fragments for Targeted Proteomics" from folder /KTH - Uhlen Lab/PrEST resource to /Panorama Public/2019/KTH Uhlen Lab - PrEST resource
31 May 2019 11:14:17,801 INFO : =======================================
31 May 2019 11:14:17,934 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
31 May 2019 11:14:17,934 INFO :
31 May 2019 11:14:17,934 INFO : Exporting experiment.
31 May 2019 11:15:51,438 INFO :
31 May 2019 11:15:51,439 INFO : Experiment export completed successfully.
31 May 2019 11:15:51,439 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentExportTask'
31 May 2019 11:15:51,495 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
31 May 2019 11:15:51,496 INFO :
31 May 2019 11:15:51,496 INFO : Importing experiment.
31 May 2019 11:15:51,505 INFO : Loading folder properties (folder type, settings and active modules)
31 May 2019 11:15:51,597 INFO : Done importing folder properties (folder type, settings and active modules)
31 May 2019 11:15:51,602 INFO : Loading xar
31 May 2019 11:16:03,493 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-5444:TargetedMS.ImportSkyZip'
31 May 2019 11:16:03,496 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-5444:TargetedMS.ImportSkyZip.Core'
31 May 2019 11:16:03,498 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-5444:TargetedMS.ImportSkyZip.Output'
31 May 2019 11:16:03,498 DEBUG: Protocol import complete
31 May 2019 11:16:03,523 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-5444:PrEST+resource'
31 May 2019 11:16:03,523 DEBUG: Experiment/Run group import complete
31 May 2019 11:16:03,535 DEBUG: Protocol action set import complete
31 May 2019 11:16:03,567 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5444:TargetedMS.ImportSkyZip'
31 May 2019 11:16:03,612 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-5444:fbe4a35d-65f9-1037-b0bb-3013bb9b3bab'
31 May 2019 11:16:03,620 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:Data.Folder-5444-Xar-c3ba19e7-65fd-1037-b0bb-3013bb9b3bab:Run66701%2Fall+combined_2019-03-21_20-40-14.sky.zip'
31 May 2019 11:16:03,620 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5444:TargetedMS.ImportSkyZip.Core'
31 May 2019 11:16:03,625 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5444:TargetedMS.ImportSkyZip.Output'
31 May 2019 11:16:03,626 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-5444:fbe4a398-65f9-1037-b0bb-3013bb9b3bab'
31 May 2019 11:16:03,634 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5444:TargetedMS.ImportSkyZip'
31 May 2019 11:16:03,643 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-5444:fbe49e76-65f9-1037-b0bb-3013bb9b3bab'
31 May 2019 11:16:03,651 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:Data.Folder-5444-Xar-c3ba19e7-65fd-1037-b0bb-3013bb9b3bab:Run66699%2F20180518+multiplex+quantification+only+samples_2018-05-18_11-58-07.sky.zip'
31 May 2019 11:16:03,651 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5444:TargetedMS.ImportSkyZip.Core'
31 May 2019 11:16:03,655 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5444:TargetedMS.ImportSkyZip.Output'
31 May 2019 11:16:03,656 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-5444:fbe49f35-65f9-1037-b0bb-3013bb9b3bab'
31 May 2019 11:16:03,662 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5444:TargetedMS.ImportSkyZip'
31 May 2019 11:16:03,668 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-5444:fbe4a18b-65f9-1037-b0bb-3013bb9b3bab'
31 May 2019 11:16:03,673 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:Data.Folder-5444-Xar-c3ba19e7-65fd-1037-b0bb-3013bb9b3bab:Run66700%2F20180518+multiplex+quantification+-+APOA4+only+samples_2018-05-18_12-13-20.sky.zip'
31 May 2019 11:16:03,674 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5444:TargetedMS.ImportSkyZip.Core'
31 May 2019 11:16:03,677 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5444:TargetedMS.ImportSkyZip.Output'
31 May 2019 11:16:03,677 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-5444:fbe4a1a1-65f9-1037-b0bb-3013bb9b3bab'
31 May 2019 11:16:03,683 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5444:TargetedMS.ImportSkyZip'
31 May 2019 11:16:03,689 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-5444:d89cd36e-65f7-1037-b0bb-3013bb9b3bab'
31 May 2019 11:16:03,694 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:Data.Folder-5444-Xar-c3ba19e7-65fd-1037-b0bb-3013bb9b3bab:Run66697%2F20180509_prest-kinetics_2018-05-09_18-52-06.sky.zip'
31 May 2019 11:16:03,694 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5444:TargetedMS.ImportSkyZip.Core'
31 May 2019 11:16:03,697 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5444:TargetedMS.ImportSkyZip.Output'
31 May 2019 11:16:03,697 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-5444:fbe4966f-65f9-1037-b0bb-3013bb9b3bab'
31 May 2019 11:16:03,699 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66701/all%20combined_2019-03-21_20-40-14/all%20combined.skyd into the system
31 May 2019 11:16:03,700 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66701/all%20combined_2019-03-21_20-40-14/all%20combined.skyd into the system
31 May 2019 11:16:03,700 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66701/all%20combined_2019-03-21_20-40-14.sky.zip into the system
31 May 2019 11:16:03,702 INFO : Starting import from all combined_2019-03-21_20-40-14.sky.zip
31 May 2019 11:16:03,707 INFO : Starting to import Skyline document from all combined_2019-03-21_20-40-14.sky.zip
31 May 2019 11:16:03,725 INFO : Expanding prest_resource_secretome.blib
31 May 2019 11:16:03,727 INFO : Expanding prest_resource_secretome.redundant.blib
31 May 2019 11:16:03,728 INFO : Expanding all combined.skyd
31 May 2019 11:16:04,202 INFO : Expanding all combined.sky.view
31 May 2019 11:16:04,202 INFO : Expanding all combined.sky
31 May 2019 11:16:04,215 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1
31 May 2019 11:16:05,281 INFO : Inserting Biognosys standards
31 May 2019 11:16:05,549 INFO : Total peptides inserted: 11
31 May 2019 11:16:05,551 INFO : Inserting APOA1
31 May 2019 11:16:08,536 INFO : Inserted 50 peptides
31 May 2019 11:16:08,799 INFO : Total peptides inserted: 55
31 May 2019 11:16:08,805 INFO : Inserting APOA1 PF
31 May 2019 11:16:09,711 INFO : Total peptides inserted: 19
31 May 2019 11:16:09,714 INFO : Inserting CD5L
31 May 2019 11:16:10,198 INFO : Total peptides inserted: 12
31 May 2019 11:16:10,202 INFO : Inserting CD5L PF
31 May 2019 11:16:10,282 INFO : Total peptides inserted: 2
31 May 2019 11:16:10,284 INFO : Inserting KNG1
31 May 2019 11:16:10,829 INFO : Total peptides inserted: 11
31 May 2019 11:16:10,833 INFO : Inserting KNG1 PF
31 May 2019 11:16:11,036 INFO : Total peptides inserted: 4
31 May 2019 11:16:11,039 INFO : Inserting SERPINA1
31 May 2019 11:16:12,994 INFO : Total peptides inserted: 49
31 May 2019 11:16:12,997 INFO : Inserting SERPINA1 PF
31 May 2019 11:16:13,628 INFO : Total peptides inserted: 19
31 May 2019 11:16:13,631 INFO : Inserting SERPINA3
31 May 2019 11:16:14,902 INFO : Total peptides inserted: 36
31 May 2019 11:16:14,905 INFO : Inserting SERPINA3 PF
31 May 2019 11:16:15,363 INFO : Total peptides inserted: 14
31 May 2019 11:16:15,366 INFO : Inserting TFRC
31 May 2019 11:16:17,283 INFO : Inserted 50 peptides
31 May 2019 11:16:19,028 INFO : Total peptides inserted: 96
31 May 2019 11:16:19,030 INFO : Inserting TFRC PF
31 May 2019 11:16:20,047 INFO : Total peptides inserted: 29
31 May 2019 11:16:22,713 INFO : Completed import of Skyline document from all combined_2019-03-21_20-40-14.sky.zip
31 May 2019 11:16:22,717 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66701/all%20combined_2019-03-21_20-40-14.sky.zip into the system
31 May 2019 11:16:22,717 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66699/20180518%20multiplex%20quantification%20only%20samples_2018-05-18_11-58-07/20180518%20multiplex%20quantification%20only%20samples.skyd into the system
31 May 2019 11:16:22,718 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66699/20180518%20multiplex%20quantification%20only%20samples_2018-05-18_11-58-07/20180518%20multiplex%20quantification%20only%20samples.skyd into the system
31 May 2019 11:16:22,718 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66699/20180518%20multiplex%20quantification%20only%20samples_2018-05-18_11-58-07.sky.zip into the system
31 May 2019 11:16:22,720 INFO : Starting import from 20180518 multiplex quantification only samples_2018-05-18_11-58-07.sky.zip
31 May 2019 11:16:22,724 INFO : Starting to import Skyline document from 20180518 multiplex quantification only samples_2018-05-18_11-58-07.sky.zip
31 May 2019 11:16:22,820 INFO : Expanding 170419_Wellness_60k.blib
31 May 2019 11:16:22,821 INFO : Expanding 170419_Wellness_60k.redundant.blib
31 May 2019 11:16:22,824 INFO : Expanding 170522_Wellness_60k2.blib
31 May 2019 11:16:22,825 INFO : Expanding 170522_Wellness_60k2.redundant.blib
31 May 2019 11:16:22,825 INFO : Expanding 20180518 multiplex quantification only samples.skyd
31 May 2019 11:16:26,763 INFO : Expanding 20180518 multiplex quantification only samples.sky.view
31 May 2019 11:16:26,764 INFO : Expanding 20180518 multiplex quantification only samples.sky
31 May 2019 11:16:27,790 INFO : Inserting HPRR3420318_C8G
31 May 2019 11:16:29,349 INFO : Total peptides inserted: 2
31 May 2019 11:16:29,352 INFO : Inserting HPRR3280115_PGLYRP2
31 May 2019 11:16:30,276 INFO : Total peptides inserted: 1
31 May 2019 11:16:30,279 INFO : Inserting HPRR3700493_C2
31 May 2019 11:16:30,923 INFO : Total peptides inserted: 1
31 May 2019 11:16:30,926 INFO : Inserting HPRR3420319_C8G
31 May 2019 11:16:32,890 INFO : Total peptides inserted: 2
31 May 2019 11:16:32,894 INFO : Inserting HPRR3730040_HGFAC
31 May 2019 11:16:33,363 INFO : Total peptides inserted: 1
31 May 2019 11:16:33,365 INFO : Inserting HPRR330186_VWF
31 May 2019 11:16:33,907 INFO : Total peptides inserted: 1
31 May 2019 11:16:33,909 INFO : Inserting HPRR1520004_B2M
31 May 2019 11:16:34,384 INFO : Total peptides inserted: 1
31 May 2019 11:16:34,384 INFO : Inserting HPRR670243_KIT_005
31 May 2019 11:16:35,427 INFO : Total peptides inserted: 2
31 May 2019 11:16:35,427 INFO : Inserting HPRR2760045_NRP1_005
31 May 2019 11:16:36,086 INFO : Total peptides inserted: 1
31 May 2019 11:16:36,086 INFO : Inserting HPRR3020294_OIT3_005
31 May 2019 11:16:36,506 INFO : Total peptides inserted: 1
31 May 2019 11:16:36,506 INFO : Inserting HPRR141283_NPC2_004
31 May 2019 11:16:37,202 INFO : Total peptides inserted: 1
31 May 2019 11:16:37,202 INFO : Inserting HPRR400189_S100A9_004
31 May 2019 11:16:38,678 INFO : Total peptides inserted: 2
31 May 2019 11:16:38,679 INFO : Inserting HPRR1820055_POSTN_004
31 May 2019 11:16:39,645 INFO : Total peptides inserted: 1
31 May 2019 11:16:39,645 INFO : Inserting HPRR2470190_GLIPR2_003
31 May 2019 11:16:40,685 INFO : Total peptides inserted: 1
31 May 2019 11:16:40,686 INFO : Inserting HPRR3420003_QSOX1_003
31 May 2019 11:16:41,584 INFO : Total peptides inserted: 1
31 May 2019 11:16:41,585 INFO : Inserting HPRR140380_PYGL_002
31 May 2019 11:16:42,547 INFO : Total peptides inserted: 1
31 May 2019 11:16:42,548 INFO : Inserting HPRR141665_SERPINA5_002
31 May 2019 11:16:44,527 INFO : Total peptides inserted: 2
31 May 2019 11:16:44,528 INFO : Inserting HPRR1060029_IL1RAP_002
31 May 2019 11:16:46,292 INFO : Total peptides inserted: 2
31 May 2019 11:16:46,293 INFO : Inserting HPRR670013_MASP2_002
31 May 2019 11:16:46,984 INFO : Total peptides inserted: 1
31 May 2019 11:16:46,984 INFO : Inserting HPRR1770044_TGFBI_002
31 May 2019 11:16:48,422 INFO : Total peptides inserted: 2
31 May 2019 11:16:48,423 INFO : Inserting HPRR1950351_PON3_002
31 May 2019 11:16:49,166 INFO : Total peptides inserted: 1
31 May 2019 11:16:49,167 INFO : Inserting HPRR2460059_INHBC_001
31 May 2019 11:16:50,236 INFO : Total peptides inserted: 1
31 May 2019 11:16:50,236 INFO : Inserting HPRR3761144_CDH2_001
31 May 2019 11:16:51,092 INFO : Total peptides inserted: 1
31 May 2019 11:16:51,095 INFO : Inserting HPRR4200068_APOE
31 May 2019 11:16:51,988 INFO : Total peptides inserted: 1
31 May 2019 11:16:51,991 INFO : Inserting HPRR4340126_APOE
31 May 2019 11:16:52,828 INFO : Total peptides inserted: 1
31 May 2019 11:16:52,829 INFO : Inserting HPRR2190035_LPA
31 May 2019 11:16:53,735 INFO : Total peptides inserted: 1
31 May 2019 11:16:53,735 INFO : Inserting HPRR4340066_SERPINF1
31 May 2019 11:16:54,449 INFO : Total peptides inserted: 1
31 May 2019 11:16:54,449 INFO : Inserting HPRR670072_TFRC
31 May 2019 11:16:55,333 INFO : Total peptides inserted: 1
31 May 2019 11:16:58,091 INFO : Completed import of Skyline document from 20180518 multiplex quantification only samples_2018-05-18_11-58-07.sky.zip
31 May 2019 11:16:58,095 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66699/20180518%20multiplex%20quantification%20only%20samples_2018-05-18_11-58-07.sky.zip into the system
31 May 2019 11:16:58,095 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66700/20180518%20multiplex%20quantification%20-%20APOA4%20only%20samples_2018-05-18_12-13-20/20180518%20multiplex%20quantification%20-%20APOA4%20only%20samples.skyd into the system
31 May 2019 11:16:58,096 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66700/20180518%20multiplex%20quantification%20-%20APOA4%20only%20samples_2018-05-18_12-13-20/20180518%20multiplex%20quantification%20-%20APOA4%20only%20samples.skyd into the system
31 May 2019 11:16:58,096 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66700/20180518%20multiplex%20quantification%20-%20APOA4%20only%20samples_2018-05-18_12-13-20.sky.zip into the system
31 May 2019 11:16:58,098 INFO : Starting import from 20180518 multiplex quantification - APOA4 only samples_2018-05-18_12-13-20.sky.zip
31 May 2019 11:16:58,102 INFO : Starting to import Skyline document from 20180518 multiplex quantification - APOA4 only samples_2018-05-18_12-13-20.sky.zip
31 May 2019 11:16:58,183 INFO : Expanding 170217_Wellness_30k2.blib
31 May 2019 11:16:58,184 INFO : Expanding 170217_Wellness_30k2.redundant.blib
31 May 2019 11:16:58,184 INFO : Expanding 170217_Wellness_30k.blib
31 May 2019 11:16:58,185 INFO : Expanding 170217_Wellness_30k.redundant.blib
31 May 2019 11:16:58,185 INFO : Expanding 20180518 multiplex quantification - APOA4 only samples.skyd
31 May 2019 11:17:00,070 INFO : Expanding 20180518 multiplex quantification - APOA4 only samples.sky.view
31 May 2019 11:17:01,047 INFO : Expanding 20180518 multiplex quantification - APOA4 only samples.sky
31 May 2019 11:17:03,159 INFO : Inserting HPRR260124_APOA4
31 May 2019 11:17:06,614 INFO : Total peptides inserted: 3
31 May 2019 11:17:09,442 INFO : Completed import of Skyline document from 20180518 multiplex quantification - APOA4 only samples_2018-05-18_12-13-20.sky.zip
31 May 2019 11:17:09,446 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66700/20180518%20multiplex%20quantification%20-%20APOA4%20only%20samples_2018-05-18_12-13-20.sky.zip into the system
31 May 2019 11:17:09,446 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66697/20180509_prest-kinetics_2018-05-09_18-52-06/20180509_prest-kinetics.skyd into the system
31 May 2019 11:17:09,448 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66697/20180509_prest-kinetics_2018-05-09_18-52-06/20180509_prest-kinetics.skyd into the system
31 May 2019 11:17:09,448 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66697/20180509_prest-kinetics_2018-05-09_18-52-06.sky.zip into the system
31 May 2019 11:17:09,450 INFO : Starting import from 20180509_prest-kinetics_2018-05-09_18-52-06.sky.zip
31 May 2019 11:17:09,454 INFO : Starting to import Skyline document from 20180509_prest-kinetics_2018-05-09_18-52-06.sky.zip
31 May 2019 11:17:09,492 INFO : Expanding apoa4.irtdb
31 May 2019 11:17:09,493 INFO : Expanding prest_digestion_kinetics.blib
31 May 2019 11:17:09,498 INFO : Expanding prest_digestion_kinetics.redundant.blib
31 May 2019 11:17:09,545 INFO : Expanding 20180509_prest-kinetics.skyd
31 May 2019 11:17:10,463 INFO : Expanding 20180509_prest-kinetics.sky.view
31 May 2019 11:17:10,463 INFO : Expanding 20180509_prest-kinetics.sky
31 May 2019 11:17:11,426 INFO : Attempting to calculate iRT regression line from shared peptides.
31 May 2019 11:17:13,648 FATAL:
31 May 2019 11:17:13,684 FATAL: Exception during experiment import
org.labkey.api.exp.XarFormatException: org.labkey.api.exp.ExperimentException: org.labkey.api.pipeline.PipelineJobException: Unable to find sufficient correlation in standard or shared library peptides (iRT Scale Id = 1070) for this folder: /Panorama Public/2019/KTH Uhlen Lab - PrEST resource
Standards:
1) LFLQFGAQGSPFLK 100.00000000000003
2) GTFIIDPAAVIR 117.19544164547912
3) GTFIIDPGGVIR 98.01674349026388
4) ADVTPADFSEWSK 75.65578500243856
5) DGLDAASYYAPVR 62.95470856582215
6) TPVITGAPYEYR 49.71047492237408
7) TPVISGGPYEYR 43.816603180207004
8) YILAGVENSK 35.58625732254517
9) VEATFGVDESNAK 24.455519748959695
10) GAGSSEPVTGLDAK 7.925453627454594
11) LGGNEQVTR -24.919999999999995
Standards in import:
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
at org.labkey.experiment.api.ExpDataImpl.importDataFile(ExpDataImpl.java:379)
at org.labkey.experiment.XarReader.loadDoc(XarReader.java:375)
at org.labkey.experiment.XarReader.parseAndLoad(XarReader.java:174)
at org.labkey.experiment.XarReader.parseAndLoad(XarReader.java:155)
at org.labkey.experiment.xar.FolderXarImporterFactory$FolderXarImporter.process(FolderXarImporterFactory.java:144)
at org.labkey.api.admin.FolderImporterImpl.process(FolderImporterImpl.java:73)
at org.labkey.targetedms.pipeline.ExperimentImportTask.doImport(ExperimentImportTask.java:97)
at org.labkey.targetedms.pipeline.ExperimentImportTask.run(ExperimentImportTask.java:58)
at org.labkey.api.pipeline.PipelineJob.runActiveTask(PipelineJob.java:795)
at org.labkey.api.pipeline.PipelineJob.run(PipelineJob.java:1026)
at org.labkey.pipeline.mule.PipelineJobRunner.run(PipelineJobRunner.java:40)
at jdk.internal.reflect.GeneratedMethodAccessor2551.invoke(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:567)
at org.mule.impl.model.resolvers.DynamicEntryPoint.invokeMethod(DynamicEntryPoint.java:312)
at org.mule.impl.model.resolvers.DynamicEntryPoint.invoke(DynamicEntryPoint.java:259)
at org.mule.impl.DefaultLifecycleAdapter.intercept(DefaultLifecycleAdapter.java:193)
at org.mule.impl.InterceptorsInvoker.execute(InterceptorsInvoker.java:47)
at org.mule.impl.model.DefaultMuleProxy.run(DefaultMuleProxy.java:470)
at org.mule.impl.work.WorkerContext.run(WorkerContext.java:310)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$CallerRunsPolicy.rejectedExecution(ThreadPoolExecutor.java:1486)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor.reject(ThreadPoolExecutor.java:391)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor.execute(ThreadPoolExecutor.java:865)
at org.mule.impl.work.ScheduleWorkExecutor.doExecute(ScheduleWorkExecutor.java:39)
at org.mule.impl.work.MuleWorkManager.executeWork(MuleWorkManager.java:277)
at org.mule.impl.work.MuleWorkManager.scheduleWork(MuleWorkManager.java:244)
at org.mule.impl.model.seda.SedaComponent.run(SedaComponent.java:483)
at org.mule.impl.work.WorkerContext.run(WorkerContext.java:310)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:650)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:675)
at java.base/java.lang.Thread.run(Thread.java:835)
Caused by: org.labkey.api.exp.ExperimentException: org.labkey.api.pipeline.PipelineJobException: Unable to find sufficient correlation in standard or shared library peptides (iRT Scale Id = 1070) for this folder: /Panorama Public/2019/KTH Uhlen Lab - PrEST resource
Standards:
1) LFLQFGAQGSPFLK 100.00000000000003
2) GTFIIDPAAVIR 117.19544164547912
3) GTFIIDPGGVIR 98.01674349026388
4) ADVTPADFSEWSK 75.65578500243856
5) DGLDAASYYAPVR 62.95470856582215
6) TPVITGAPYEYR 49.71047492237408
7) TPVISGGPYEYR 43.816603180207004
8) YILAGVENSK 35.58625732254517
9) VEATFGVDESNAK 24.455519748959695
10) GAGSSEPVTGLDAK 7.925453627454594
11) LGGNEQVTR -24.919999999999995
Standards in import:
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
at org.labkey.targetedms.TargetedMSDataHandler.importFile(TargetedMSDataHandler.java:102)
at org.labkey.experiment.api.ExpDataImpl.importDataFile(ExpDataImpl.java:375)
... 30 more
Caused by: org.labkey.api.pipeline.PipelineJobException: Unable to find sufficient correlation in standard or shared library peptides (iRT Scale Id = 1070) for this folder: /Panorama Public/2019/KTH Uhlen Lab - PrEST resource
Standards:
1) LFLQFGAQGSPFLK 100.00000000000003
2) GTFIIDPAAVIR 117.19544164547912
3) GTFIIDPGGVIR 98.01674349026388
4) ADVTPADFSEWSK 75.65578500243856
5) DGLDAASYYAPVR 62.95470856582215
6) TPVITGAPYEYR 49.71047492237408
7) TPVISGGPYEYR 43.816603180207004
8) YILAGVENSK 35.58625732254517
9) VEATFGVDESNAK 24.455519748959695
10) GAGSSEPVTGLDAK 7.925453627454594
11) LGGNEQVTR -24.919999999999995
Standards in import:
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
at org.labkey.targetedms.SkylineDocImporter.normalizeIrtImportAndReweighValues(SkylineDocImporter.java:818)
at org.labkey.targetedms.SkylineDocImporter.insertiRTData(SkylineDocImporter.java:772)
at org.labkey.targetedms.SkylineDocImporter.importSkylineDoc(SkylineDocImporter.java:244)
at org.labkey.targetedms.SkylineDocImporter.importRun(SkylineDocImporter.java:201)
at org.labkey.targetedms.TargetedMSDataHandler.importFile(TargetedMSDataHandler.java:80)
... 31 more
31 May 2019 11:17:13,687 FATAL: Experiment import FAILED
31 May 2019 11:17:13,689 INFO : Failed to complete task 'org.labkey.targetedms.pipeline.ExperimentImportTask'
31 May 2019 11:17:13,690 ERROR: org.labkey.api.exp.ExperimentException: org.labkey.api.pipeline.PipelineJobException: Unable to find sufficient correlation in standard or shared library peptides (iRT Scale Id = 1070) for this folder: /Panorama Public/2019/KTH Uhlen Lab - PrEST resource
Standards:
1) LFLQFGAQGSPFLK 100.00000000000003
2) GTFIIDPAAVIR 117.19544164547912
3) GTFIIDPGGVIR 98.01674349026388
4) ADVTPADFSEWSK 75.65578500243856
5) DGLDAASYYAPVR 62.95470856582215
6) TPVITGAPYEYR 49.71047492237408
7) TPVISGGPYEYR 43.816603180207004
8) YILAGVENSK 35.58625732254517
9) VEATFGVDESNAK 24.455519748959695
10) GAGSSEPVTGLDAK 7.925453627454594
11) LGGNEQVTR -24.919999999999995
Standards in import:
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
org.labkey.api.pipeline.PipelineJobException: org.labkey.api.exp.ExperimentException: org.labkey.api.pipeline.PipelineJobException: Unable to find sufficient correlation in standard or shared library peptides (iRT Scale Id = 1070) for this folder: /Panorama Public/2019/KTH Uhlen Lab - PrEST resource
Standards:
1) LFLQFGAQGSPFLK 100.00000000000003
2) GTFIIDPAAVIR 117.19544164547912
3) GTFIIDPGGVIR 98.01674349026388
4) ADVTPADFSEWSK 75.65578500243856
5) DGLDAASYYAPVR 62.95470856582215
6) TPVITGAPYEYR 49.71047492237408
7) TPVISGGPYEYR 43.816603180207004
8) YILAGVENSK 35.58625732254517
9) VEATFGVDESNAK 24.455519748959695
10) GAGSSEPVTGLDAK 7.925453627454594
11) LGGNEQVTR -24.919999999999995
Standards in import:
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
at org.labkey.targetedms.pipeline.ExperimentImportTask.run(ExperimentImportTask.java:68)
at org.labkey.api.pipeline.PipelineJob.runActiveTask(PipelineJob.java:795)
at org.labkey.api.pipeline.PipelineJob.run(PipelineJob.java:1026)
at org.labkey.pipeline.mule.PipelineJobRunner.run(PipelineJobRunner.java:40)
at jdk.internal.reflect.GeneratedMethodAccessor2551.invoke(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:567)
at org.mule.impl.model.resolvers.DynamicEntryPoint.invokeMethod(DynamicEntryPoint.java:312)
at org.mule.impl.model.resolvers.DynamicEntryPoint.invoke(DynamicEntryPoint.java:259)
at org.mule.impl.DefaultLifecycleAdapter.intercept(DefaultLifecycleAdapter.java:193)
at org.mule.impl.InterceptorsInvoker.execute(InterceptorsInvoker.java:47)
at org.mule.impl.model.DefaultMuleProxy.run(DefaultMuleProxy.java:470)
at org.mule.impl.work.WorkerContext.run(WorkerContext.java:310)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$CallerRunsPolicy.rejectedExecution(ThreadPoolExecutor.java:1486)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor.reject(ThreadPoolExecutor.java:391)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor.execute(ThreadPoolExecutor.java:865)
at org.mule.impl.work.ScheduleWorkExecutor.doExecute(ScheduleWorkExecutor.java:39)
at org.mule.impl.work.MuleWorkManager.executeWork(MuleWorkManager.java:277)
at org.mule.impl.work.MuleWorkManager.scheduleWork(MuleWorkManager.java:244)
at org.mule.impl.model.seda.SedaComponent.run(SedaComponent.java:483)
at org.mule.impl.work.WorkerContext.run(WorkerContext.java:310)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:650)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:675)
at java.base/java.lang.Thread.run(Thread.java:835)
Caused by: org.labkey.api.exp.XarFormatException: org.labkey.api.exp.ExperimentException: org.labkey.api.pipeline.PipelineJobException: Unable to find sufficient correlation in standard or shared library peptides (iRT Scale Id = 1070) for this folder: /Panorama Public/2019/KTH Uhlen Lab - PrEST resource
Standards:
1) LFLQFGAQGSPFLK 100.00000000000003
2) GTFIIDPAAVIR 117.19544164547912
3) GTFIIDPGGVIR 98.01674349026388
4) ADVTPADFSEWSK 75.65578500243856
5) DGLDAASYYAPVR 62.95470856582215
6) TPVITGAPYEYR 49.71047492237408
7) TPVISGGPYEYR 43.816603180207004
8) YILAGVENSK 35.58625732254517
9) VEATFGVDESNAK 24.455519748959695
10) GAGSSEPVTGLDAK 7.925453627454594
11) LGGNEQVTR -24.919999999999995
Standards in import:
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
at org.labkey.experiment.api.ExpDataImpl.importDataFile(ExpDataImpl.java:379)
at org.labkey.experiment.XarReader.loadDoc(XarReader.java:375)
at org.labkey.experiment.XarReader.parseAndLoad(XarReader.java:174)
at org.labkey.experiment.XarReader.parseAndLoad(XarReader.java:155)
at org.labkey.experiment.xar.FolderXarImporterFactory$FolderXarImporter.process(FolderXarImporterFactory.java:144)
at org.labkey.api.admin.FolderImporterImpl.process(FolderImporterImpl.java:73)
at org.labkey.targetedms.pipeline.ExperimentImportTask.doImport(ExperimentImportTask.java:97)
at org.labkey.targetedms.pipeline.ExperimentImportTask.run(ExperimentImportTask.java:58)
... 23 more
Caused by: org.labkey.api.exp.ExperimentException: org.labkey.api.pipeline.PipelineJobException: Unable to find sufficient correlation in standard or shared library peptides (iRT Scale Id = 1070) for this folder: /Panorama Public/2019/KTH Uhlen Lab - PrEST resource
Standards:
1) LFLQFGAQGSPFLK 100.00000000000003
2) GTFIIDPAAVIR 117.19544164547912
3) GTFIIDPGGVIR 98.01674349026388
4) ADVTPADFSEWSK 75.65578500243856
5) DGLDAASYYAPVR 62.95470856582215
6) TPVITGAPYEYR 49.71047492237408
7) TPVISGGPYEYR 43.816603180207004
8) YILAGVENSK 35.58625732254517
9) VEATFGVDESNAK 24.455519748959695
10) GAGSSEPVTGLDAK 7.925453627454594
11) LGGNEQVTR -24.919999999999995
Standards in import:
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
at org.labkey.targetedms.TargetedMSDataHandler.importFile(TargetedMSDataHandler.java:102)
at org.labkey.experiment.api.ExpDataImpl.importDataFile(ExpDataImpl.java:375)
... 30 more
Caused by: org.labkey.api.pipeline.PipelineJobException: Unable to find sufficient correlation in standard or shared library peptides (iRT Scale Id = 1070) for this folder: /Panorama Public/2019/KTH Uhlen Lab - PrEST resource
Standards:
1) LFLQFGAQGSPFLK 100.00000000000003
2) GTFIIDPAAVIR 117.19544164547912
3) GTFIIDPGGVIR 98.01674349026388
4) ADVTPADFSEWSK 75.65578500243856
5) DGLDAASYYAPVR 62.95470856582215
6) TPVITGAPYEYR 49.71047492237408
7) TPVISGGPYEYR 43.816603180207004
8) YILAGVENSK 35.58625732254517
9) VEATFGVDESNAK 24.455519748959695
10) GAGSSEPVTGLDAK 7.925453627454594
11) LGGNEQVTR -24.919999999999995
Standards in import:
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
at org.labkey.targetedms.SkylineDocImporter.normalizeIrtImportAndReweighValues(SkylineDocImporter.java:818)
at org.labkey.targetedms.SkylineDocImporter.insertiRTData(SkylineDocImporter.java:772)
at org.labkey.targetedms.SkylineDocImporter.importSkylineDoc(SkylineDocImporter.java:244)
at org.labkey.targetedms.SkylineDocImporter.importRun(SkylineDocImporter.java:201)
at org.labkey.targetedms.TargetedMSDataHandler.importFile(TargetedMSDataHandler.java:80)
... 31 more
31 May 2019 11:18:37,428 INFO : Retrying job.
31 May 2019 11:18:37,429 DEBUG: Database indicates active task ID is org.labkey.targetedms.pipeline.ExperimentImportTask
31 May 2019 11:18:37,429 DEBUG: Retry details: Old Job ID: c3ba171e-65fd-1037-b0bb-3013bb9b3bab
31 May 2019 11:18:37,448 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
31 May 2019 11:18:37,448 INFO :
31 May 2019 11:18:37,448 INFO : Importing experiment.
31 May 2019 11:18:37,455 INFO : Loading folder properties (folder type, settings and active modules)
31 May 2019 11:18:37,478 INFO : Done importing folder properties (folder type, settings and active modules)
31 May 2019 11:18:37,482 INFO : Loading xar
31 May 2019 11:18:50,768 DEBUG: Existing action set with parent protocol LSID 'urn:lsid:uw.edu:Protocol.Folder-5444:TargetedMS.ImportSkyZip' is referenced by other experiment runs, so it cannot be updated
31 May 2019 11:18:50,769 DEBUG: Existing protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-5444:TargetedMS.ImportSkyZip' is referenced by other experiment runs, so it cannot be updated
31 May 2019 11:18:50,771 DEBUG: Existing protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-5444:TargetedMS.ImportSkyZip.Core' is referenced by other experiment runs, so it cannot be updated
31 May 2019 11:18:50,772 DEBUG: Existing protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-5444:TargetedMS.ImportSkyZip.Output' is referenced by other experiment runs, so it cannot be updated
31 May 2019 11:18:50,774 DEBUG: Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-5444:TargetedMS.ImportSkyZip' matches a protocol with the same LSID that has already been loaded.
31 May 2019 11:18:50,776 DEBUG: Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-5444:TargetedMS.ImportSkyZip.Core' matches a protocol with the same LSID that has already been loaded.
31 May 2019 11:18:50,778 DEBUG: Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-5444:TargetedMS.ImportSkyZip.Output' matches a protocol with the same LSID that has already been loaded.
31 May 2019 11:18:50,778 DEBUG: Protocol import complete
31 May 2019 11:18:50,778 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-5444:PrEST+resource'
31 May 2019 11:18:50,779 DEBUG: Experiment/Run group import complete
31 May 2019 11:18:50,790 DEBUG: Protocol action set import complete
31 May 2019 11:18:50,791 DEBUG: Experiment run already exists, it will NOT be reimported, LSID 'urn:lsid:uw.edu:Run.Folder-5444:fbe4a398-65f9-1037-b0bb-3013bb9b3bab'
31 May 2019 11:18:50,792 INFO : Experiment run 'all combined_2019-03-21_20-40-14.sky.zip' complete
31 May 2019 11:18:50,792 DEBUG: Experiment run import complete, LSID 'urn:lsid:uw.edu:Run.Folder-5444:fbe4a398-65f9-1037-b0bb-3013bb9b3bab'
31 May 2019 11:18:50,792 DEBUG: Experiment run already exists, it will NOT be reimported, LSID 'urn:lsid:uw.edu:Run.Folder-5444:fbe49f35-65f9-1037-b0bb-3013bb9b3bab'
31 May 2019 11:18:50,793 INFO : Experiment run '20180518 multiplex quantification only samples_2018-05-18_11-58-07.sky.zip' complete
31 May 2019 11:18:50,793 DEBUG: Experiment run import complete, LSID 'urn:lsid:uw.edu:Run.Folder-5444:fbe49f35-65f9-1037-b0bb-3013bb9b3bab'
31 May 2019 11:18:50,793 DEBUG: Experiment run already exists, it will NOT be reimported, LSID 'urn:lsid:uw.edu:Run.Folder-5444:fbe4a1a1-65f9-1037-b0bb-3013bb9b3bab'
31 May 2019 11:18:50,794 INFO : Experiment run '20180518 multiplex quantification - APOA4 only samples_2018-05-18_12-13-20.sky.zip' complete
31 May 2019 11:18:50,794 DEBUG: Experiment run import complete, LSID 'urn:lsid:uw.edu:Run.Folder-5444:fbe4a1a1-65f9-1037-b0bb-3013bb9b3bab'
31 May 2019 11:18:50,794 DEBUG: Experiment run already exists, it will NOT be reimported, LSID 'urn:lsid:uw.edu:Run.Folder-5444:fbe4966f-65f9-1037-b0bb-3013bb9b3bab'
31 May 2019 11:18:50,795 INFO : Experiment run '20180509_prest-kinetics_2018-05-09_18-52-06.sky.zip' complete
31 May 2019 11:18:50,795 DEBUG: Experiment run import complete, LSID 'urn:lsid:uw.edu:Run.Folder-5444:fbe4966f-65f9-1037-b0bb-3013bb9b3bab'
31 May 2019 11:18:50,796 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66701/all%20combined_2019-03-21_20-40-14.sky.zip into the system
31 May 2019 11:18:50,798 INFO : all combined_2019-03-21_20-40-14.sky.zip has already been imported so it does not need to be imported again
31 May 2019 11:18:50,800 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66701/all%20combined_2019-03-21_20-40-14.sky.zip into the system
31 May 2019 11:18:50,800 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66701/all%20combined_2019-03-21_20-40-14/all%20combined.skyd into the system
31 May 2019 11:18:50,801 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66701/all%20combined_2019-03-21_20-40-14/all%20combined.skyd into the system
31 May 2019 11:18:50,802 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66699/20180518%20multiplex%20quantification%20only%20samples_2018-05-18_11-58-07/20180518%20multiplex%20quantification%20only%20samples.skyd into the system
31 May 2019 11:18:50,802 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66699/20180518%20multiplex%20quantification%20only%20samples_2018-05-18_11-58-07/20180518%20multiplex%20quantification%20only%20samples.skyd into the system
31 May 2019 11:18:50,803 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66699/20180518%20multiplex%20quantification%20only%20samples_2018-05-18_11-58-07.sky.zip into the system
31 May 2019 11:18:50,805 INFO : 20180518 multiplex quantification only samples_2018-05-18_11-58-07.sky.zip has already been imported so it does not need to be imported again
31 May 2019 11:18:50,806 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66699/20180518%20multiplex%20quantification%20only%20samples_2018-05-18_11-58-07.sky.zip into the system
31 May 2019 11:18:50,806 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66700/20180518%20multiplex%20quantification%20-%20APOA4%20only%20samples_2018-05-18_12-13-20.sky.zip into the system
31 May 2019 11:18:50,809 INFO : 20180518 multiplex quantification - APOA4 only samples_2018-05-18_12-13-20.sky.zip has already been imported so it does not need to be imported again
31 May 2019 11:18:50,810 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66700/20180518%20multiplex%20quantification%20-%20APOA4%20only%20samples_2018-05-18_12-13-20.sky.zip into the system
31 May 2019 11:18:50,810 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66700/20180518%20multiplex%20quantification%20-%20APOA4%20only%20samples_2018-05-18_12-13-20/20180518%20multiplex%20quantification%20-%20APOA4%20only%20samples.skyd into the system
31 May 2019 11:18:50,811 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66700/20180518%20multiplex%20quantification%20-%20APOA4%20only%20samples_2018-05-18_12-13-20/20180518%20multiplex%20quantification%20-%20APOA4%20only%20samples.skyd into the system
31 May 2019 11:18:50,811 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66697/20180509_prest-kinetics_2018-05-09_18-52-06.sky.zip into the system
31 May 2019 11:18:50,815 INFO : Starting to import Skyline document from 20180509_prest-kinetics_2018-05-09_18-52-06.sky.zip
31 May 2019 11:18:50,851 INFO : Expanding apoa4.irtdb
31 May 2019 11:18:50,852 INFO : Expanding prest_digestion_kinetics.blib
31 May 2019 11:18:50,857 INFO : Expanding prest_digestion_kinetics.redundant.blib
31 May 2019 11:18:50,904 INFO : Expanding 20180509_prest-kinetics.skyd
31 May 2019 11:18:51,791 INFO : Expanding 20180509_prest-kinetics.sky.view
31 May 2019 11:18:51,791 INFO : Expanding 20180509_prest-kinetics.sky
31 May 2019 11:18:52,723 INFO : Attempting to calculate iRT regression line from shared peptides.
31 May 2019 11:18:55,436 FATAL:
31 May 2019 11:18:55,470 FATAL: Exception during experiment import
org.labkey.api.exp.XarFormatException: org.labkey.api.exp.ExperimentException: org.labkey.api.pipeline.PipelineJobException: Unable to find sufficient correlation in standard or shared library peptides (iRT Scale Id = 1070) for this folder: /Panorama Public/2019/KTH Uhlen Lab - PrEST resource
Standards:
1) LFLQFGAQGSPFLK 100.00000000000003
2) GTFIIDPAAVIR 117.19544164547912
3) GTFIIDPGGVIR 98.01674349026388
4) ADVTPADFSEWSK 75.65578500243856
5) DGLDAASYYAPVR 62.95470856582215
6) TPVITGAPYEYR 49.71047492237408
7) TPVISGGPYEYR 43.816603180207004
8) YILAGVENSK 35.58625732254517
9) VEATFGVDESNAK 24.455519748959695
10) GAGSSEPVTGLDAK 7.925453627454594
11) LGGNEQVTR -24.919999999999995
Standards in import:
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
at org.labkey.experiment.api.ExpDataImpl.importDataFile(ExpDataImpl.java:379)
at org.labkey.experiment.XarReader.loadDoc(XarReader.java:375)
at org.labkey.experiment.XarReader.parseAndLoad(XarReader.java:174)
at org.labkey.experiment.XarReader.parseAndLoad(XarReader.java:155)
at org.labkey.experiment.xar.FolderXarImporterFactory$FolderXarImporter.process(FolderXarImporterFactory.java:144)
at org.labkey.api.admin.FolderImporterImpl.process(FolderImporterImpl.java:73)
at org.labkey.targetedms.pipeline.ExperimentImportTask.doImport(ExperimentImportTask.java:97)
at org.labkey.targetedms.pipeline.ExperimentImportTask.run(ExperimentImportTask.java:58)
at org.labkey.api.pipeline.PipelineJob.runActiveTask(PipelineJob.java:795)
at org.labkey.api.pipeline.PipelineJob.run(PipelineJob.java:1026)
at org.labkey.pipeline.mule.PipelineJobRunner.run(PipelineJobRunner.java:40)
at jdk.internal.reflect.GeneratedMethodAccessor2551.invoke(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:567)
at org.mule.impl.model.resolvers.DynamicEntryPoint.invokeMethod(DynamicEntryPoint.java:312)
at org.mule.impl.model.resolvers.DynamicEntryPoint.invoke(DynamicEntryPoint.java:259)
at org.mule.impl.DefaultLifecycleAdapter.intercept(DefaultLifecycleAdapter.java:193)
at org.mule.impl.InterceptorsInvoker.execute(InterceptorsInvoker.java:47)
at org.mule.impl.model.DefaultMuleProxy.run(DefaultMuleProxy.java:470)
at org.mule.impl.work.WorkerContext.run(WorkerContext.java:310)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$CallerRunsPolicy.rejectedExecution(ThreadPoolExecutor.java:1486)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor.reject(ThreadPoolExecutor.java:391)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor.execute(ThreadPoolExecutor.java:865)
at org.mule.impl.work.ScheduleWorkExecutor.doExecute(ScheduleWorkExecutor.java:39)
at org.mule.impl.work.MuleWorkManager.executeWork(MuleWorkManager.java:277)
at org.mule.impl.work.MuleWorkManager.scheduleWork(MuleWorkManager.java:244)
at org.mule.impl.model.seda.SedaComponent.run(SedaComponent.java:483)
at org.mule.impl.work.WorkerContext.run(WorkerContext.java:310)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:650)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:675)
at java.base/java.lang.Thread.run(Thread.java:835)
Caused by: org.labkey.api.exp.ExperimentException: org.labkey.api.pipeline.PipelineJobException: Unable to find sufficient correlation in standard or shared library peptides (iRT Scale Id = 1070) for this folder: /Panorama Public/2019/KTH Uhlen Lab - PrEST resource
Standards:
1) LFLQFGAQGSPFLK 100.00000000000003
2) GTFIIDPAAVIR 117.19544164547912
3) GTFIIDPGGVIR 98.01674349026388
4) ADVTPADFSEWSK 75.65578500243856
5) DGLDAASYYAPVR 62.95470856582215
6) TPVITGAPYEYR 49.71047492237408
7) TPVISGGPYEYR 43.816603180207004
8) YILAGVENSK 35.58625732254517
9) VEATFGVDESNAK 24.455519748959695
10) GAGSSEPVTGLDAK 7.925453627454594
11) LGGNEQVTR -24.919999999999995
Standards in import:
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
at org.labkey.targetedms.TargetedMSDataHandler.importFile(TargetedMSDataHandler.java:102)
at org.labkey.experiment.api.ExpDataImpl.importDataFile(ExpDataImpl.java:375)
... 30 more
Caused by: org.labkey.api.pipeline.PipelineJobException: Unable to find sufficient correlation in standard or shared library peptides (iRT Scale Id = 1070) for this folder: /Panorama Public/2019/KTH Uhlen Lab - PrEST resource
Standards:
1) LFLQFGAQGSPFLK 100.00000000000003
2) GTFIIDPAAVIR 117.19544164547912
3) GTFIIDPGGVIR 98.01674349026388
4) ADVTPADFSEWSK 75.65578500243856
5) DGLDAASYYAPVR 62.95470856582215
6) TPVITGAPYEYR 49.71047492237408
7) TPVISGGPYEYR 43.816603180207004
8) YILAGVENSK 35.58625732254517
9) VEATFGVDESNAK 24.455519748959695
10) GAGSSEPVTGLDAK 7.925453627454594
11) LGGNEQVTR -24.919999999999995
Standards in import:
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
at org.labkey.targetedms.SkylineDocImporter.normalizeIrtImportAndReweighValues(SkylineDocImporter.java:818)
at org.labkey.targetedms.SkylineDocImporter.insertiRTData(SkylineDocImporter.java:772)
at org.labkey.targetedms.SkylineDocImporter.importSkylineDoc(SkylineDocImporter.java:244)
at org.labkey.targetedms.SkylineDocImporter.importRun(SkylineDocImporter.java:201)
at org.labkey.targetedms.TargetedMSDataHandler.importFile(TargetedMSDataHandler.java:80)
... 31 more
31 May 2019 11:18:55,473 FATAL: Experiment import FAILED
31 May 2019 11:18:55,476 INFO : Failed to complete task 'org.labkey.targetedms.pipeline.ExperimentImportTask'
31 May 2019 11:18:55,476 ERROR: org.labkey.api.exp.ExperimentException: org.labkey.api.pipeline.PipelineJobException: Unable to find sufficient correlation in standard or shared library peptides (iRT Scale Id = 1070) for this folder: /Panorama Public/2019/KTH Uhlen Lab - PrEST resource
Standards:
1) LFLQFGAQGSPFLK 100.00000000000003
2) GTFIIDPAAVIR 117.19544164547912
3) GTFIIDPGGVIR 98.01674349026388
4) ADVTPADFSEWSK 75.65578500243856
5) DGLDAASYYAPVR 62.95470856582215
6) TPVITGAPYEYR 49.71047492237408
7) TPVISGGPYEYR 43.816603180207004
8) YILAGVENSK 35.58625732254517
9) VEATFGVDESNAK 24.455519748959695
10) GAGSSEPVTGLDAK 7.925453627454594
11) LGGNEQVTR -24.919999999999995
Standards in import:
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
org.labkey.api.pipeline.PipelineJobException: org.labkey.api.exp.ExperimentException: org.labkey.api.pipeline.PipelineJobException: Unable to find sufficient correlation in standard or shared library peptides (iRT Scale Id = 1070) for this folder: /Panorama Public/2019/KTH Uhlen Lab - PrEST resource
Standards:
1) LFLQFGAQGSPFLK 100.00000000000003
2) GTFIIDPAAVIR 117.19544164547912
3) GTFIIDPGGVIR 98.01674349026388
4) ADVTPADFSEWSK 75.65578500243856
5) DGLDAASYYAPVR 62.95470856582215
6) TPVITGAPYEYR 49.71047492237408
7) TPVISGGPYEYR 43.816603180207004
8) YILAGVENSK 35.58625732254517
9) VEATFGVDESNAK 24.455519748959695
10) GAGSSEPVTGLDAK 7.925453627454594
11) LGGNEQVTR -24.919999999999995
Standards in import:
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
at org.labkey.targetedms.pipeline.ExperimentImportTask.run(ExperimentImportTask.java:68)
at org.labkey.api.pipeline.PipelineJob.runActiveTask(PipelineJob.java:795)
at org.labkey.api.pipeline.PipelineJob.run(PipelineJob.java:1026)
at org.labkey.pipeline.mule.PipelineJobRunner.run(PipelineJobRunner.java:40)
at jdk.internal.reflect.GeneratedMethodAccessor2551.invoke(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:567)
at org.mule.impl.model.resolvers.DynamicEntryPoint.invokeMethod(DynamicEntryPoint.java:312)
at org.mule.impl.model.resolvers.DynamicEntryPoint.invoke(DynamicEntryPoint.java:259)
at org.mule.impl.DefaultLifecycleAdapter.intercept(DefaultLifecycleAdapter.java:193)
at org.mule.impl.InterceptorsInvoker.execute(InterceptorsInvoker.java:47)
at org.mule.impl.model.DefaultMuleProxy.run(DefaultMuleProxy.java:470)
at org.mule.impl.work.WorkerContext.run(WorkerContext.java:310)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$CallerRunsPolicy.rejectedExecution(ThreadPoolExecutor.java:1486)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor.reject(ThreadPoolExecutor.java:391)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor.execute(ThreadPoolExecutor.java:865)
at org.mule.impl.work.ScheduleWorkExecutor.doExecute(ScheduleWorkExecutor.java:39)
at org.mule.impl.work.MuleWorkManager.executeWork(MuleWorkManager.java:277)
at org.mule.impl.work.MuleWorkManager.scheduleWork(MuleWorkManager.java:244)
at org.mule.impl.model.seda.SedaComponent.run(SedaComponent.java:483)
at org.mule.impl.work.WorkerContext.run(WorkerContext.java:310)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:650)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:675)
at java.base/java.lang.Thread.run(Thread.java:835)
Caused by: org.labkey.api.exp.XarFormatException: org.labkey.api.exp.ExperimentException: org.labkey.api.pipeline.PipelineJobException: Unable to find sufficient correlation in standard or shared library peptides (iRT Scale Id = 1070) for this folder: /Panorama Public/2019/KTH Uhlen Lab - PrEST resource
Standards:
1) LFLQFGAQGSPFLK 100.00000000000003
2) GTFIIDPAAVIR 117.19544164547912
3) GTFIIDPGGVIR 98.01674349026388
4) ADVTPADFSEWSK 75.65578500243856
5) DGLDAASYYAPVR 62.95470856582215
6) TPVITGAPYEYR 49.71047492237408
7) TPVISGGPYEYR 43.816603180207004
8) YILAGVENSK 35.58625732254517
9) VEATFGVDESNAK 24.455519748959695
10) GAGSSEPVTGLDAK 7.925453627454594
11) LGGNEQVTR -24.919999999999995
Standards in import:
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
at org.labkey.experiment.api.ExpDataImpl.importDataFile(ExpDataImpl.java:379)
at org.labkey.experiment.XarReader.loadDoc(XarReader.java:375)
at org.labkey.experiment.XarReader.parseAndLoad(XarReader.java:174)
at org.labkey.experiment.XarReader.parseAndLoad(XarReader.java:155)
at org.labkey.experiment.xar.FolderXarImporterFactory$FolderXarImporter.process(FolderXarImporterFactory.java:144)
at org.labkey.api.admin.FolderImporterImpl.process(FolderImporterImpl.java:73)
at org.labkey.targetedms.pipeline.ExperimentImportTask.doImport(ExperimentImportTask.java:97)
at org.labkey.targetedms.pipeline.ExperimentImportTask.run(ExperimentImportTask.java:58)
... 23 more
Caused by: org.labkey.api.exp.ExperimentException: org.labkey.api.pipeline.PipelineJobException: Unable to find sufficient correlation in standard or shared library peptides (iRT Scale Id = 1070) for this folder: /Panorama Public/2019/KTH Uhlen Lab - PrEST resource
Standards:
1) LFLQFGAQGSPFLK 100.00000000000003
2) GTFIIDPAAVIR 117.19544164547912
3) GTFIIDPGGVIR 98.01674349026388
4) ADVTPADFSEWSK 75.65578500243856
5) DGLDAASYYAPVR 62.95470856582215
6) TPVITGAPYEYR 49.71047492237408
7) TPVISGGPYEYR 43.816603180207004
8) YILAGVENSK 35.58625732254517
9) VEATFGVDESNAK 24.455519748959695
10) GAGSSEPVTGLDAK 7.925453627454594
11) LGGNEQVTR -24.919999999999995
Standards in import:
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
at org.labkey.targetedms.TargetedMSDataHandler.importFile(TargetedMSDataHandler.java:102)
at org.labkey.experiment.api.ExpDataImpl.importDataFile(ExpDataImpl.java:375)
... 30 more
Caused by: org.labkey.api.pipeline.PipelineJobException: Unable to find sufficient correlation in standard or shared library peptides (iRT Scale Id = 1070) for this folder: /Panorama Public/2019/KTH Uhlen Lab - PrEST resource
Standards:
1) LFLQFGAQGSPFLK 100.00000000000003
2) GTFIIDPAAVIR 117.19544164547912
3) GTFIIDPGGVIR 98.01674349026388
4) ADVTPADFSEWSK 75.65578500243856
5) DGLDAASYYAPVR 62.95470856582215
6) TPVITGAPYEYR 49.71047492237408
7) TPVISGGPYEYR 43.816603180207004
8) YILAGVENSK 35.58625732254517
9) VEATFGVDESNAK 24.455519748959695
10) GAGSSEPVTGLDAK 7.925453627454594
11) LGGNEQVTR -24.919999999999995
Standards in import:
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
NONE
at org.labkey.targetedms.SkylineDocImporter.normalizeIrtImportAndReweighValues(SkylineDocImporter.java:818)
at org.labkey.targetedms.SkylineDocImporter.insertiRTData(SkylineDocImporter.java:772)
at org.labkey.targetedms.SkylineDocImporter.importSkylineDoc(SkylineDocImporter.java:244)
at org.labkey.targetedms.SkylineDocImporter.importRun(SkylineDocImporter.java:201)
at org.labkey.targetedms.TargetedMSDataHandler.importFile(TargetedMSDataHandler.java:80)
... 31 more
31 May 2019 11:30:34,420 INFO : Retrying job.
31 May 2019 11:30:34,421 DEBUG: Database indicates active task ID is org.labkey.targetedms.pipeline.ExperimentImportTask
31 May 2019 11:30:34,421 DEBUG: Retry details: Old Job ID: c3ba171e-65fd-1037-b0bb-3013bb9b3bab
31 May 2019 11:30:34,613 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
31 May 2019 11:30:34,613 INFO :
31 May 2019 11:30:34,613 INFO : Importing experiment.
31 May 2019 11:30:34,620 INFO : Loading folder properties (folder type, settings and active modules)
31 May 2019 11:30:34,753 INFO : Done importing folder properties (folder type, settings and active modules)
31 May 2019 11:30:34,757 INFO : Loading xar
31 May 2019 11:30:45,662 DEBUG: Existing action set with parent protocol LSID 'urn:lsid:uw.edu:Protocol.Folder-5444:TargetedMS.ImportSkyZip' is referenced by other experiment runs, so it cannot be updated
31 May 2019 11:30:45,663 DEBUG: Existing protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-5444:TargetedMS.ImportSkyZip' is referenced by other experiment runs, so it cannot be updated
31 May 2019 11:30:45,665 DEBUG: Existing protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-5444:TargetedMS.ImportSkyZip.Core' is referenced by other experiment runs, so it cannot be updated
31 May 2019 11:30:45,666 DEBUG: Existing protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-5444:TargetedMS.ImportSkyZip.Output' is referenced by other experiment runs, so it cannot be updated
31 May 2019 11:30:45,669 DEBUG: Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-5444:TargetedMS.ImportSkyZip' matches a protocol with the same LSID that has already been loaded.
31 May 2019 11:30:45,670 DEBUG: Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-5444:TargetedMS.ImportSkyZip.Core' matches a protocol with the same LSID that has already been loaded.
31 May 2019 11:30:45,672 DEBUG: Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-5444:TargetedMS.ImportSkyZip.Output' matches a protocol with the same LSID that has already been loaded.
31 May 2019 11:30:45,672 DEBUG: Protocol import complete
31 May 2019 11:30:45,673 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-5444:PrEST+resource'
31 May 2019 11:30:45,673 DEBUG: Experiment/Run group import complete
31 May 2019 11:30:45,684 DEBUG: Protocol action set import complete
31 May 2019 11:30:45,693 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5444:TargetedMS.ImportSkyZip'
31 May 2019 11:30:45,700 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-5444:fbe4a35d-65f9-1037-b0bb-3013bb9b3bab'
31 May 2019 11:30:45,706 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:Data.Folder-5444-Xar-001abda4-6600-1037-b0bb-3013bb9b3bab:Run66701%2Fall+combined_2019-03-21_20-40-14.sky.zip'
31 May 2019 11:30:45,706 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5444:TargetedMS.ImportSkyZip.Core'
31 May 2019 11:30:45,709 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5444:TargetedMS.ImportSkyZip.Output'
31 May 2019 11:30:45,710 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-5444:fbe4a398-65f9-1037-b0bb-3013bb9b3bab'
31 May 2019 11:30:45,715 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5444:TargetedMS.ImportSkyZip'
31 May 2019 11:30:45,721 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-5444:fbe49e76-65f9-1037-b0bb-3013bb9b3bab'
31 May 2019 11:30:45,726 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:Data.Folder-5444-Xar-001abda4-6600-1037-b0bb-3013bb9b3bab:Run66699%2F20180518+multiplex+quantification+only+samples_2018-05-18_11-58-07.sky.zip'
31 May 2019 11:30:45,726 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5444:TargetedMS.ImportSkyZip.Core'
31 May 2019 11:30:45,729 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5444:TargetedMS.ImportSkyZip.Output'
31 May 2019 11:30:45,729 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-5444:fbe49f35-65f9-1037-b0bb-3013bb9b3bab'
31 May 2019 11:30:45,735 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5444:TargetedMS.ImportSkyZip'
31 May 2019 11:30:45,740 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-5444:fbe4a18b-65f9-1037-b0bb-3013bb9b3bab'
31 May 2019 11:30:45,746 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:Data.Folder-5444-Xar-001abda4-6600-1037-b0bb-3013bb9b3bab:Run66700%2F20180518+multiplex+quantification+-+APOA4+only+samples_2018-05-18_12-13-20.sky.zip'
31 May 2019 11:30:45,746 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5444:TargetedMS.ImportSkyZip.Core'
31 May 2019 11:30:45,748 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5444:TargetedMS.ImportSkyZip.Output'
31 May 2019 11:30:45,749 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-5444:fbe4a1a1-65f9-1037-b0bb-3013bb9b3bab'
31 May 2019 11:30:45,755 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5444:TargetedMS.ImportSkyZip'
31 May 2019 11:30:45,760 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-5444:d89cd36e-65f7-1037-b0bb-3013bb9b3bab'
31 May 2019 11:30:45,765 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:Data.Folder-5444-Xar-001abda4-6600-1037-b0bb-3013bb9b3bab:Run66697%2F20180509_prest-kinetics_2018-05-09_18-52-06.sky.zip'
31 May 2019 11:30:45,765 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5444:TargetedMS.ImportSkyZip.Core'
31 May 2019 11:30:45,768 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5444:TargetedMS.ImportSkyZip.Output'
31 May 2019 11:30:45,769 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-5444:fbe4966f-65f9-1037-b0bb-3013bb9b3bab'
31 May 2019 11:30:45,770 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66701/all%20combined_2019-03-21_20-40-14/all%20combined.skyd into the system
31 May 2019 11:30:45,771 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66701/all%20combined_2019-03-21_20-40-14/all%20combined.skyd into the system
31 May 2019 11:30:45,771 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66701/all%20combined_2019-03-21_20-40-14.sky.zip into the system
31 May 2019 11:30:45,773 INFO : Starting import from all combined_2019-03-21_20-40-14.sky.zip
31 May 2019 11:30:45,776 INFO : Starting to import Skyline document from all combined_2019-03-21_20-40-14.sky.zip
31 May 2019 11:30:45,791 INFO : Expanding prest_resource_secretome.blib
31 May 2019 11:30:45,793 INFO : Expanding prest_resource_secretome.redundant.blib
31 May 2019 11:30:45,795 INFO : Expanding all combined.skyd
31 May 2019 11:30:46,268 INFO : Expanding all combined.sky.view
31 May 2019 11:30:46,268 INFO : Expanding all combined.sky
31 May 2019 11:30:46,282 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1
31 May 2019 11:30:47,388 INFO : Inserting Biognosys standards
31 May 2019 11:30:47,566 INFO : Total peptides inserted: 11
31 May 2019 11:30:47,568 INFO : Inserting APOA1
31 May 2019 11:30:49,419 INFO : Inserted 50 peptides
31 May 2019 11:30:49,587 INFO : Total peptides inserted: 55
31 May 2019 11:30:49,591 INFO : Inserting APOA1 PF
31 May 2019 11:30:50,177 INFO : Total peptides inserted: 19
31 May 2019 11:30:50,180 INFO : Inserting CD5L
31 May 2019 11:30:50,600 INFO : Total peptides inserted: 12
31 May 2019 11:30:50,604 INFO : Inserting CD5L PF
31 May 2019 11:30:50,666 INFO : Total peptides inserted: 2
31 May 2019 11:30:50,668 INFO : Inserting KNG1
31 May 2019 11:30:51,114 INFO : Total peptides inserted: 11
31 May 2019 11:30:51,118 INFO : Inserting KNG1 PF
31 May 2019 11:30:51,291 INFO : Total peptides inserted: 4
31 May 2019 11:30:51,294 INFO : Inserting SERPINA1
31 May 2019 11:30:52,874 INFO : Total peptides inserted: 49
31 May 2019 11:30:52,878 INFO : Inserting SERPINA1 PF
31 May 2019 11:30:53,569 INFO : Total peptides inserted: 19
31 May 2019 11:30:53,573 INFO : Inserting SERPINA3
31 May 2019 11:30:55,266 INFO : Total peptides inserted: 36
31 May 2019 11:30:55,271 INFO : Inserting SERPINA3 PF
31 May 2019 11:30:55,925 INFO : Total peptides inserted: 14
31 May 2019 11:30:55,929 INFO : Inserting TFRC
31 May 2019 11:30:58,653 INFO : Inserted 50 peptides
31 May 2019 11:31:01,125 INFO : Total peptides inserted: 96
31 May 2019 11:31:01,129 INFO : Inserting TFRC PF
31 May 2019 11:31:02,636 INFO : Total peptides inserted: 29
31 May 2019 11:31:05,725 INFO : Completed import of Skyline document from all combined_2019-03-21_20-40-14.sky.zip
31 May 2019 11:31:05,730 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66701/all%20combined_2019-03-21_20-40-14.sky.zip into the system
31 May 2019 11:31:05,730 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66699/20180518%20multiplex%20quantification%20only%20samples_2018-05-18_11-58-07/20180518%20multiplex%20quantification%20only%20samples.skyd into the system
31 May 2019 11:31:05,731 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66699/20180518%20multiplex%20quantification%20only%20samples_2018-05-18_11-58-07/20180518%20multiplex%20quantification%20only%20samples.skyd into the system
31 May 2019 11:31:05,731 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66699/20180518%20multiplex%20quantification%20only%20samples_2018-05-18_11-58-07.sky.zip into the system
31 May 2019 11:31:05,733 INFO : Starting import from 20180518 multiplex quantification only samples_2018-05-18_11-58-07.sky.zip
31 May 2019 11:31:05,736 INFO : Starting to import Skyline document from 20180518 multiplex quantification only samples_2018-05-18_11-58-07.sky.zip
31 May 2019 11:31:05,829 INFO : Expanding 170419_Wellness_60k.blib
31 May 2019 11:31:05,831 INFO : Expanding 170419_Wellness_60k.redundant.blib
31 May 2019 11:31:05,833 INFO : Expanding 170522_Wellness_60k2.blib
31 May 2019 11:31:05,834 INFO : Expanding 170522_Wellness_60k2.redundant.blib
31 May 2019 11:31:05,835 INFO : Expanding 20180518 multiplex quantification only samples.skyd
31 May 2019 11:31:09,080 INFO : Expanding 20180518 multiplex quantification only samples.sky.view
31 May 2019 11:31:09,080 INFO : Expanding 20180518 multiplex quantification only samples.sky
31 May 2019 11:31:10,596 INFO : Inserting HPRR3420318_C8G
31 May 2019 11:31:12,086 INFO : Total peptides inserted: 2
31 May 2019 11:31:12,089 INFO : Inserting HPRR3280115_PGLYRP2
31 May 2019 11:31:13,285 INFO : Total peptides inserted: 1
31 May 2019 11:31:13,289 INFO : Inserting HPRR3700493_C2
31 May 2019 11:31:14,462 INFO : Total peptides inserted: 1
31 May 2019 11:31:14,465 INFO : Inserting HPRR3420319_C8G
31 May 2019 11:31:16,676 INFO : Total peptides inserted: 2
31 May 2019 11:31:16,680 INFO : Inserting HPRR3730040_HGFAC
31 May 2019 11:31:17,598 INFO : Total peptides inserted: 1
31 May 2019 11:31:17,601 INFO : Inserting HPRR330186_VWF
31 May 2019 11:31:18,626 INFO : Total peptides inserted: 1
31 May 2019 11:31:18,630 INFO : Inserting HPRR1520004_B2M
31 May 2019 11:31:20,683 INFO : Total peptides inserted: 1
31 May 2019 11:31:20,684 INFO : Inserting HPRR670243_KIT_005
31 May 2019 11:31:21,913 INFO : Total peptides inserted: 2
31 May 2019 11:31:21,913 INFO : Inserting HPRR2760045_NRP1_005
31 May 2019 11:31:22,335 INFO : Total peptides inserted: 1
31 May 2019 11:31:22,335 INFO : Inserting HPRR3020294_OIT3_005
31 May 2019 11:31:22,758 INFO : Total peptides inserted: 1
31 May 2019 11:31:22,759 INFO : Inserting HPRR141283_NPC2_004
31 May 2019 11:31:23,163 INFO : Total peptides inserted: 1
31 May 2019 11:31:23,164 INFO : Inserting HPRR400189_S100A9_004
31 May 2019 11:31:24,042 INFO : Total peptides inserted: 2
31 May 2019 11:31:24,042 INFO : Inserting HPRR1820055_POSTN_004
31 May 2019 11:31:25,626 INFO : Total peptides inserted: 1
31 May 2019 11:31:25,626 INFO : Inserting HPRR2470190_GLIPR2_003
31 May 2019 11:31:26,038 INFO : Total peptides inserted: 1
31 May 2019 11:31:26,038 INFO : Inserting HPRR3420003_QSOX1_003
31 May 2019 11:31:26,596 INFO : Total peptides inserted: 1
31 May 2019 11:31:26,597 INFO : Inserting HPRR140380_PYGL_002
31 May 2019 11:31:27,339 INFO : Total peptides inserted: 1
31 May 2019 11:31:27,340 INFO : Inserting HPRR141665_SERPINA5_002
31 May 2019 11:31:28,944 INFO : Total peptides inserted: 2
31 May 2019 11:31:28,944 INFO : Inserting HPRR1060029_IL1RAP_002
31 May 2019 11:31:31,236 INFO : Total peptides inserted: 2
31 May 2019 11:31:31,236 INFO : Inserting HPRR670013_MASP2_002
31 May 2019 11:31:32,064 INFO : Total peptides inserted: 1
31 May 2019 11:31:32,065 INFO : Inserting HPRR1770044_TGFBI_002
31 May 2019 11:31:33,677 INFO : Total peptides inserted: 2
31 May 2019 11:31:33,678 INFO : Inserting HPRR1950351_PON3_002
31 May 2019 11:31:34,360 INFO : Total peptides inserted: 1
31 May 2019 11:31:34,360 INFO : Inserting HPRR2460059_INHBC_001
31 May 2019 11:31:35,269 INFO : Total peptides inserted: 1
31 May 2019 11:31:35,269 INFO : Inserting HPRR3761144_CDH2_001
31 May 2019 11:31:35,983 INFO : Total peptides inserted: 1
31 May 2019 11:31:35,987 INFO : Inserting HPRR4200068_APOE
31 May 2019 11:31:36,754 INFO : Total peptides inserted: 1
31 May 2019 11:31:36,757 INFO : Inserting HPRR4340126_APOE
31 May 2019 11:31:37,505 INFO : Total peptides inserted: 1
31 May 2019 11:31:37,506 INFO : Inserting HPRR2190035_LPA
31 May 2019 11:31:38,239 INFO : Total peptides inserted: 1
31 May 2019 11:31:38,239 INFO : Inserting HPRR4340066_SERPINF1
31 May 2019 11:31:38,896 INFO : Total peptides inserted: 1
31 May 2019 11:31:38,897 INFO : Inserting HPRR670072_TFRC
31 May 2019 11:31:39,547 INFO : Total peptides inserted: 1
31 May 2019 11:31:42,029 INFO : Completed import of Skyline document from 20180518 multiplex quantification only samples_2018-05-18_11-58-07.sky.zip
31 May 2019 11:31:42,033 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66699/20180518%20multiplex%20quantification%20only%20samples_2018-05-18_11-58-07.sky.zip into the system
31 May 2019 11:31:42,033 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66700/20180518%20multiplex%20quantification%20-%20APOA4%20only%20samples_2018-05-18_12-13-20/20180518%20multiplex%20quantification%20-%20APOA4%20only%20samples.skyd into the system
31 May 2019 11:31:42,035 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66700/20180518%20multiplex%20quantification%20-%20APOA4%20only%20samples_2018-05-18_12-13-20/20180518%20multiplex%20quantification%20-%20APOA4%20only%20samples.skyd into the system
31 May 2019 11:31:42,035 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66700/20180518%20multiplex%20quantification%20-%20APOA4%20only%20samples_2018-05-18_12-13-20.sky.zip into the system
31 May 2019 11:31:42,037 INFO : Starting import from 20180518 multiplex quantification - APOA4 only samples_2018-05-18_12-13-20.sky.zip
31 May 2019 11:31:42,041 INFO : Starting to import Skyline document from 20180518 multiplex quantification - APOA4 only samples_2018-05-18_12-13-20.sky.zip
31 May 2019 11:31:42,123 INFO : Expanding 170217_Wellness_30k2.blib
31 May 2019 11:31:42,123 INFO : Expanding 170217_Wellness_30k2.redundant.blib
31 May 2019 11:31:42,124 INFO : Expanding 170217_Wellness_30k.blib
31 May 2019 11:31:42,124 INFO : Expanding 170217_Wellness_30k.redundant.blib
31 May 2019 11:31:42,125 INFO : Expanding 20180518 multiplex quantification - APOA4 only samples.skyd
31 May 2019 11:31:43,994 INFO : Expanding 20180518 multiplex quantification - APOA4 only samples.sky.view
31 May 2019 11:31:43,995 INFO : Expanding 20180518 multiplex quantification - APOA4 only samples.sky
31 May 2019 11:31:46,004 INFO : Inserting HPRR260124_APOA4
31 May 2019 11:31:47,996 INFO : Total peptides inserted: 3
31 May 2019 11:31:50,280 INFO : Completed import of Skyline document from 20180518 multiplex quantification - APOA4 only samples_2018-05-18_12-13-20.sky.zip
31 May 2019 11:31:50,283 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66700/20180518%20multiplex%20quantification%20-%20APOA4%20only%20samples_2018-05-18_12-13-20.sky.zip into the system
31 May 2019 11:31:50,284 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66697/20180509_prest-kinetics_2018-05-09_18-52-06/20180509_prest-kinetics.skyd into the system
31 May 2019 11:31:50,285 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66697/20180509_prest-kinetics_2018-05-09_18-52-06/20180509_prest-kinetics.skyd into the system
31 May 2019 11:31:50,285 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66697/20180509_prest-kinetics_2018-05-09_18-52-06.sky.zip into the system
31 May 2019 11:31:50,287 INFO : Starting import from 20180509_prest-kinetics_2018-05-09_18-52-06.sky.zip
31 May 2019 11:31:50,291 INFO : Starting to import Skyline document from 20180509_prest-kinetics_2018-05-09_18-52-06.sky.zip
31 May 2019 11:31:50,325 INFO : Expanding apoa4.irtdb
31 May 2019 11:31:50,325 INFO : Expanding prest_digestion_kinetics.blib
31 May 2019 11:31:50,330 INFO : Expanding prest_digestion_kinetics.redundant.blib
31 May 2019 11:31:50,377 INFO : Expanding 20180509_prest-kinetics.skyd
31 May 2019 11:31:51,241 INFO : Expanding 20180509_prest-kinetics.sky.view
31 May 2019 11:31:51,241 INFO : Expanding 20180509_prest-kinetics.sky
31 May 2019 11:31:52,289 INFO : Inserting APOA4_HPRR260124
31 May 2019 11:31:54,202 INFO : Total peptides inserted: 18
31 May 2019 11:31:54,205 INFO : Inserting C1S_HPRR280086
31 May 2019 11:31:55,191 INFO : Total peptides inserted: 7
31 May 2019 11:31:55,194 INFO : Inserting SERPINA3_HPRR320016
31 May 2019 11:31:56,731 INFO : Total peptides inserted: 12
31 May 2019 11:31:56,734 INFO : Inserting SERPINA1_HPRR320021
31 May 2019 11:31:57,970 INFO : Total peptides inserted: 11
31 May 2019 11:31:57,972 INFO : Inserting PROC_HPRR330194
31 May 2019 11:31:58,329 INFO : Total peptides inserted: 3
31 May 2019 11:31:58,332 INFO : Inserting JCHAIN_HPRR350060
31 May 2019 11:31:59,422 INFO : Total peptides inserted: 8
31 May 2019 11:31:59,425 INFO : Inserting APOA1_HPRR3450265
31 May 2019 11:32:03,103 INFO : Total peptides inserted: 17
31 May 2019 11:32:03,107 INFO : Inserting AHSG_HPRR350074
31 May 2019 11:32:04,485 INFO : Total peptides inserted: 8
31 May 2019 11:32:04,488 INFO : Inserting KNG1_HPRR350146
31 May 2019 11:32:05,870 INFO : Total peptides inserted: 7
31 May 2019 11:32:05,873 INFO : Inserting AFM_HPRR670085
31 May 2019 11:32:07,097 INFO : Total peptides inserted: 7
31 May 2019 11:32:07,100 INFO : Inserting AFM_HPRR670086
31 May 2019 11:32:08,193 INFO : Total peptides inserted: 7
31 May 2019 11:32:08,196 INFO : Inserting PPBP_HPRR1510029
31 May 2019 11:32:08,964 INFO : Total peptides inserted: 5
31 May 2019 11:32:08,967 INFO : Inserting ALB_HPRR2760276
31 May 2019 11:32:10,641 INFO : Total peptides inserted: 11
31 May 2019 11:32:10,644 INFO : Inserting CLEC3B_HPRR2760280
31 May 2019 11:32:11,177 INFO : Total peptides inserted: 4
31 May 2019 11:32:11,180 INFO : Inserting VTN_HPRR4030673
31 May 2019 11:32:12,029 INFO : Total peptides inserted: 6
31 May 2019 11:32:12,031 INFO : Inserting APOE_HPRR4200068
31 May 2019 11:32:12,756 INFO : Total peptides inserted: 5
31 May 2019 11:32:15,507 INFO : Completed import of Skyline document from 20180509_prest-kinetics_2018-05-09_18-52-06.sky.zip
31 May 2019 11:32:15,511 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66697/20180509_prest-kinetics_2018-05-09_18-52-06.sky.zip into the system
31 May 2019 11:32:15,551 INFO : Done importing xar
31 May 2019 11:32:15,554 INFO : Loading etl definitions
31 May 2019 11:32:15,557 INFO : Loading wikis
31 May 2019 11:32:15,580 INFO : 0 wikis imported
31 May 2019 11:32:15,580 INFO : Done importing wikis
31 May 2019 11:32:22,472 INFO : Loading pages and webpart properties
31 May 2019 11:32:22,559 INFO : Done importing pages and webpart properties
31 May 2019 11:32:22,564 INFO : Loading subfolders and container tabs
31 May 2019 11:32:23,126 INFO : New container created with inherited permissions for secretome-proteins
31 May 2019 11:32:23,126 INFO : Loading folder archive for secretome-proteins
31 May 2019 11:32:23,132 INFO : Loading folder properties (folder type, settings and active modules)
31 May 2019 11:32:23,251 INFO : Done importing folder properties (folder type, settings and active modules)
31 May 2019 11:32:23,257 INFO : Loading xar
31 May 2019 11:32:23,262 INFO : Done importing xar
31 May 2019 11:32:23,267 INFO : Loading etl definitions
31 May 2019 11:32:23,272 INFO : Loading wikis
31 May 2019 11:32:23,274 INFO : 0 wikis imported
31 May 2019 11:32:23,275 INFO : Done importing wikis
31 May 2019 11:32:23,280 INFO : Loading pages and webpart properties
31 May 2019 11:32:23,418 INFO : Done importing pages and webpart properties
31 May 2019 11:32:23,419 INFO : Done importing folder archive for secretome-proteins
31 May 2019 11:32:23,419 INFO : Done importing subfolders and container tabs
31 May 2019 11:32:23,419 INFO :
31 May 2019 11:32:23,420 INFO : Experiment import completed successfully.
31 May 2019 11:32:23,420 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentImportTask'
31 May 2019 11:32:23,484 INFO : Starting to run task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
31 May 2019 11:32:23,484 INFO :
31 May 2019 11:32:23,485 INFO : Finishing up experiment copy.
31 May 2019 11:32:23,493 INFO : Creating a new TargetedMS experiment entry in targetedms.ExperimentAnnotations.
31 May 2019 11:32:23,571 INFO : Updating access URL to point to the new copy of the data.
31 May 2019 11:32:23,628 INFO : Setting the 'copied' timestamp on the JournalExperiment table.
31 May 2019 11:32:23,629 INFO : Removing copy permissions given to journal.
31 May 2019 11:32:23,728 INFO : Adding read permissions to all users that are folder admins in the source container.
31 May 2019 11:32:23,740 INFO : Setting the TargetedMS folder type to 'Experimental Data'
31 May 2019 11:32:23,753 INFO : Updating the 'Raw Data' tab configuration
31 May 2019 11:32:23,760 INFO : Updating dataFileUrls for run 20180509_prest-kinetics_2018-05-09_18-52-06.sky.zip; targetedms run ID 67357
31 May 2019 11:32:23,761 INFO : Updating dataFileUrl...
31 May 2019 11:32:23,761 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/20180509_prest-kinetics_2018-05-09_18-52-06.sky.zip
31 May 2019 11:32:23,761 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/20180509_prest-kinetics_2018-05-09_18-52-06.sky.zip
31 May 2019 11:32:23,766 INFO : Updating dataFileUrl...
31 May 2019 11:32:23,766 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/20180509_prest-kinetics_2018-05-09_18-52-06/20180509_prest-kinetics.skyd
31 May 2019 11:32:23,766 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/20180509_prest-kinetics_2018-05-09_18-52-06/20180509_prest-kinetics.skyd
31 May 2019 11:32:23,777 INFO : Updating dataFileUrls for run 20180518 multiplex quantification only samples_2018-05-18_11-58-07.sky.zip; targetedms run ID 67358
31 May 2019 11:32:23,777 INFO : Updating dataFileUrl...
31 May 2019 11:32:23,778 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/20180518%20multiplex%20quantification%20only%20samples_2018-05-18_11-58-07/20180518%20multiplex%20quantification%20only%20samples.skyd
31 May 2019 11:32:23,778 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/20180518%20multiplex%20quantification%20only%20samples_2018-05-18_11-58-07/20180518%20multiplex%20quantification%20only%20samples.skyd
31 May 2019 11:32:23,781 INFO : Updating dataFileUrl...
31 May 2019 11:32:23,782 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/20180518%20multiplex%20quantification%20only%20samples_2018-05-18_11-58-07.sky.zip
31 May 2019 11:32:23,782 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/20180518%20multiplex%20quantification%20only%20samples_2018-05-18_11-58-07.sky.zip
31 May 2019 11:32:23,788 INFO : Updating dataFileUrls for run 20180518 multiplex quantification - APOA4 only samples_2018-05-18_12-13-20.sky.zip; targetedms run ID 67359
31 May 2019 11:32:23,789 INFO : Updating dataFileUrl...
31 May 2019 11:32:23,789 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/20180518%20multiplex%20quantification%20-%20APOA4%20only%20samples_2018-05-18_12-13-20/20180518%20multiplex%20quantification%20-%20APOA4%20only%20samples.skyd
31 May 2019 11:32:23,789 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/20180518%20multiplex%20quantification%20-%20APOA4%20only%20samples_2018-05-18_12-13-20/20180518%20multiplex%20quantification%20-%20APOA4%20only%20samples.skyd
31 May 2019 11:32:23,793 INFO : Updating dataFileUrl...
31 May 2019 11:32:23,793 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/20180518%20multiplex%20quantification%20-%20APOA4%20only%20samples_2018-05-18_12-13-20.sky.zip
31 May 2019 11:32:23,794 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/20180518%20multiplex%20quantification%20-%20APOA4%20only%20samples_2018-05-18_12-13-20.sky.zip
31 May 2019 11:32:23,799 INFO : Updating dataFileUrls for run all combined_2019-03-21_20-40-14.sky.zip; targetedms run ID 67361
31 May 2019 11:32:23,800 INFO : Updating dataFileUrl...
31 May 2019 11:32:23,800 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/all%20combined_2019-03-21_20-40-14.sky.zip
31 May 2019 11:32:23,801 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/all%20combined_2019-03-21_20-40-14.sky.zip
31 May 2019 11:32:23,804 INFO : Updating dataFileUrl...
31 May 2019 11:32:23,804 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/all%20combined_2019-03-21_20-40-14/all%20combined.skyd
31 May 2019 11:32:23,805 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/all%20combined_2019-03-21_20-40-14/all%20combined.skyd
31 May 2019 11:32:23,810 INFO : Updating dataFileUrls for run all combined_2019-03-21_20-40-14.sky.zip; targetedms run ID 67362
31 May 2019 11:32:23,811 INFO : Updating dataFileUrl...
31 May 2019 11:32:23,811 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66701/all%20combined_2019-03-21_20-40-14.sky.zip
31 May 2019 11:32:23,811 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/all%20combined_2019-03-21_20-40-14.sky.zip
31 May 2019 11:32:23,815 INFO : Updating dataFileUrl...
31 May 2019 11:32:23,815 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66701/all%20combined_2019-03-21_20-40-14/all%20combined.skyd
31 May 2019 11:32:23,816 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/all%20combined_2019-03-21_20-40-14/all%20combined.skyd
31 May 2019 11:32:23,821 INFO : Updating dataFileUrls for run 20180518 multiplex quantification only samples_2018-05-18_11-58-07.sky.zip; targetedms run ID 67363
31 May 2019 11:32:23,822 INFO : Updating dataFileUrl...
31 May 2019 11:32:23,822 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66699/20180518%20multiplex%20quantification%20only%20samples_2018-05-18_11-58-07/20180518%20multiplex%20quantification%20only%20samples.skyd
31 May 2019 11:32:23,823 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/20180518%20multiplex%20quantification%20only%20samples_2018-05-18_11-58-07/20180518%20multiplex%20quantification%20only%20samples.skyd
31 May 2019 11:32:23,826 INFO : Updating dataFileUrl...
31 May 2019 11:32:23,826 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66699/20180518%20multiplex%20quantification%20only%20samples_2018-05-18_11-58-07.sky.zip
31 May 2019 11:32:23,827 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/20180518%20multiplex%20quantification%20only%20samples_2018-05-18_11-58-07.sky.zip
31 May 2019 11:32:23,832 INFO : Updating dataFileUrls for run 20180518 multiplex quantification - APOA4 only samples_2018-05-18_12-13-20.sky.zip; targetedms run ID 67364
31 May 2019 11:32:23,833 INFO : Updating dataFileUrl...
31 May 2019 11:32:23,833 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66700/20180518%20multiplex%20quantification%20-%20APOA4%20only%20samples_2018-05-18_12-13-20.sky.zip
31 May 2019 11:32:23,834 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/20180518%20multiplex%20quantification%20-%20APOA4%20only%20samples_2018-05-18_12-13-20.sky.zip
31 May 2019 11:32:23,837 INFO : Updating dataFileUrl...
31 May 2019 11:32:23,837 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66700/20180518%20multiplex%20quantification%20-%20APOA4%20only%20samples_2018-05-18_12-13-20/20180518%20multiplex%20quantification%20-%20APOA4%20only%20samples.skyd
31 May 2019 11:32:23,838 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/20180518%20multiplex%20quantification%20-%20APOA4%20only%20samples_2018-05-18_12-13-20/20180518%20multiplex%20quantification%20-%20APOA4%20only%20samples.skyd
31 May 2019 11:32:23,923 INFO : Updating dataFileUrls for run 20180509_prest-kinetics_2018-05-09_18-52-06.sky.zip; targetedms run ID 67365
31 May 2019 11:32:23,923 INFO : Updating dataFileUrl...
31 May 2019 11:32:23,923 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66697/20180509_prest-kinetics_2018-05-09_18-52-06.sky.zip
31 May 2019 11:32:23,924 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/20180509_prest-kinetics_2018-05-09_18-52-06.sky.zip
31 May 2019 11:32:23,938 INFO : Updating dataFileUrl...
31 May 2019 11:32:23,938 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/export/xar/experiments_and_runs.xar.exploded/Run66697/20180509_prest-kinetics_2018-05-09_18-52-06/20180509_prest-kinetics.skyd
31 May 2019 11:32:23,939 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/KTH%20Uhlen%20Lab%20-%20PrEST%20resource/@files/20180509_prest-kinetics_2018-05-09_18-52-06/20180509_prest-kinetics.skyd
31 May 2019 11:32:25,896 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask'