08 Jan 2019 15:44:37,230 INFO : Copying experiment "Engineering Corynebacterium glutamicum to produce the biogasoline isopentenol from plant biomass hydrolysates" from folder /JBEI/Thomas Eng et al - Engineering Corynebacterium glutamicum to produce the biogasoline isopentenol from plant biomass hydrolysates to /Panorama Public/2019/JBEI - Thomas Eng et al
08 Jan 2019 15:44:37,230 INFO : =======================================
08 Jan 2019 15:55:18,953 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentExportTask' at location 'webserver'
08 Jan 2019 15:55:18,953 INFO :
08 Jan 2019 15:55:18,953 INFO : Exporting experiment.
08 Jan 2019 15:55:20,888 INFO :
08 Jan 2019 15:55:20,889 INFO : Experiment export completed successfully.
08 Jan 2019 15:55:20,889 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentExportTask'
08 Jan 2019 15:55:20,922 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentImportTask' at location 'webserver'
08 Jan 2019 15:55:20,922 INFO :
08 Jan 2019 15:55:20,922 INFO : Importing experiment.
08 Jan 2019 15:55:20,934 INFO : Loading folder properties (folder type, settings and active modules)
08 Jan 2019 15:55:21,046 INFO : Done importing folder properties (folder type, settings and active modules)
08 Jan 2019 15:55:21,052 INFO : Loading container specific module properties
08 Jan 2019 15:55:21,124 INFO : Done importing container specific module properties
08 Jan 2019 15:55:21,130 INFO : Loading xar
08 Jan 2019 15:55:21,346 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-4851:TargetedMS.ImportSkyZip'
08 Jan 2019 15:55:21,354 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-4851:TargetedMS.ImportSkyZip.Core'
08 Jan 2019 15:55:21,362 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-4851:TargetedMS.ImportSkyZip.Output'
08 Jan 2019 15:55:21,362 DEBUG: Protocol import complete
08 Jan 2019 15:55:21,366 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-4851:Engineering+Corynebacterium+glutamicum+to+produce+the+biogasoline+isopentenol+from+plant+biomass+hydrolysates'
08 Jan 2019 15:55:21,366 DEBUG: Experiment/Run group import complete
08 Jan 2019 15:55:21,397 DEBUG: Protocol action set import complete
08 Jan 2019 15:55:21,456 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4851:TargetedMS.ImportSkyZip'
08 Jan 2019 15:55:21,563 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-4851:c6657aef-f50b-1036-8133-3013bb9b374c'
08 Jan 2019 15:55:21,577 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-4851:c6657ad7-f50b-1036-8133-3013bb9b374c'
08 Jan 2019 15:55:21,577 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4851:TargetedMS.ImportSkyZip.Core'
08 Jan 2019 15:55:21,586 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4851:TargetedMS.ImportSkyZip.Output'
08 Jan 2019 15:55:21,588 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-4851:c6657d20-f50b-1036-8133-3013bb9b374c'
08 Jan 2019 15:55:21,603 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/JBEI%20-%20Thomas%20Eng%20et%20al/@files/export/xar/experiments_and_runs.xar.exploded/Run45661/Thomas%20C.glu%20isopentenol%20production%20targeted%20proteins_2019-01-07_16-39-19/Thomas%20C.glu%20isopentenol%20production%20targeted%20proteins.skyd into the system
08 Jan 2019 15:55:21,605 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/JBEI%20-%20Thomas%20Eng%20et%20al/@files/export/xar/experiments_and_runs.xar.exploded/Run45661/Thomas%20C.glu%20isopentenol%20production%20targeted%20proteins_2019-01-07_16-39-19/Thomas%20C.glu%20isopentenol%20production%20targeted%20proteins.skyd into the system
08 Jan 2019 15:55:21,605 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/JBEI%20-%20Thomas%20Eng%20et%20al/@files/export/xar/experiments_and_runs.xar.exploded/Run45661/Thomas%20C.glu%20isopentenol%20production%20targeted%20proteins_2019-01-07_16-39-19.sky.zip into the system
08 Jan 2019 15:55:21,610 INFO : Starting import from Thomas C.glu isopentenol production targeted proteins_2019-01-07_16-39-19.sky.zip
08 Jan 2019 15:55:21,626 INFO : Starting to import Skyline document from Thomas C.glu isopentenol production targeted proteins_2019-01-07_16-39-19.sky.zip
08 Jan 2019 15:55:21,631 INFO : Expanding Thomas C.glu isopentenol production targeted proteins.skyd
08 Jan 2019 15:55:21,738 INFO : Expanding Thomas C.glu isopentenol production targeted proteins.sky.view
08 Jan 2019 15:55:21,738 INFO : Expanding Thomas C.glu isopentenol production targeted proteins.sky
08 Jan 2019 15:55:21,772 WARN : The version of this Skyline document is 4.2. This is newer than the highest supported version 4.1
08 Jan 2019 15:55:22,342 INFO : Inserting sp|P76461|ATOB_ECOLI
08 Jan 2019 15:55:24,854 INFO : Inserting sp|P07277|KIME_YEAST
08 Jan 2019 15:55:26,078 INFO : Inserting sp|P32377|MVD1_YEAST
08 Jan 2019 15:55:27,450 INFO : Inserting sp|P54839|HMCS_YEAST
08 Jan 2019 15:55:28,650 INFO : Inserting sp|P12683|HMDH1_YEAST
08 Jan 2019 15:55:30,169 INFO : Inserting tr|Q8NTY9|Q8NTY9_CORGL
08 Jan 2019 15:55:31,342 INFO : Inserting sp|P42463|ILVB_CORGL
08 Jan 2019 15:55:33,286 INFO : Inserting tr|Q79VG4|Q79VG4_CORGL
08 Jan 2019 15:55:34,776 INFO : Inserting tr|Q8NMA4|Q8NMA4_CORGL
08 Jan 2019 15:55:38,016 INFO : Completed import of Skyline document from Thomas C.glu isopentenol production targeted proteins_2019-01-07_16-39-19.sky.zip
08 Jan 2019 15:55:38,023 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/JBEI%20-%20Thomas%20Eng%20et%20al/@files/export/xar/experiments_and_runs.xar.exploded/Run45661/Thomas%20C.glu%20isopentenol%20production%20targeted%20proteins_2019-01-07_16-39-19.sky.zip into the system
08 Jan 2019 15:55:38,039 INFO : Done importing xar
08 Jan 2019 15:55:38,044 INFO : Loading wikis
08 Jan 2019 15:55:38,051 INFO : 0 wikis imported
08 Jan 2019 15:55:38,051 INFO : Done importing wikis
08 Jan 2019 15:55:38,247 INFO : Loading pages and webpart properties
08 Jan 2019 15:55:38,314 INFO : Done importing pages and webpart properties
08 Jan 2019 15:55:38,314 INFO :
08 Jan 2019 15:55:38,314 INFO : Experiment import completed successfully.
08 Jan 2019 15:55:38,315 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentImportTask'
08 Jan 2019 15:55:38,343 INFO : Starting to run task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask' at location 'webserver'
08 Jan 2019 15:55:38,343 INFO :
08 Jan 2019 15:55:38,344 INFO : Finishing up experiment copy.
08 Jan 2019 15:55:38,347 INFO : Creating a new TargetedMS experiment entry in targetedms.ExperimentAnnotations.
08 Jan 2019 15:55:38,355 INFO : Updating access URL to point to the new copy of the data.
08 Jan 2019 15:55:38,484 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask'