04 Jul 2019 09:47:03,252 INFO : Copying experiment "Analysis of endogenous peptides released from osteoarthritic cartilage unravels novel pathogenic markers" from folder /INIBIC - Proteomics Group/Neopeptides OA cartilage to /Panorama Public/2019/INIBIC - Neopeptides OA cartilage
04 Jul 2019 09:47:03,253 INFO : =======================================
04 Jul 2019 09:47:03,506 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
04 Jul 2019 09:47:03,507 INFO :
04 Jul 2019 09:47:03,507 INFO : Exporting experiment.
04 Jul 2019 09:47:05,673 INFO :
04 Jul 2019 09:47:05,673 INFO : Experiment export completed successfully.
04 Jul 2019 09:47:05,673 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentExportTask'
04 Jul 2019 09:47:05,732 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
04 Jul 2019 09:47:05,733 INFO :
04 Jul 2019 09:47:05,733 INFO : Importing experiment.
04 Jul 2019 09:47:05,750 INFO : Loading folder properties (folder type, settings and active modules)
04 Jul 2019 09:47:05,918 INFO : Done importing folder properties (folder type, settings and active modules)
04 Jul 2019 09:47:05,925 INFO : Loading xar
04 Jul 2019 09:47:06,125 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-5563:TargetedMS.ImportSkyZip'
04 Jul 2019 09:47:06,132 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-5563:TargetedMS.ImportSkyZip.Core'
04 Jul 2019 09:47:06,138 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-5563:TargetedMS.ImportSkyZip.Output'
04 Jul 2019 09:47:06,139 DEBUG: Protocol import complete
04 Jul 2019 09:47:06,159 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-5563:Analysis+of+endogenous+peptides+released+from+osteoarthritic+cartilage+unravels+novel+pathogenic+markers'
04 Jul 2019 09:47:06,160 DEBUG: Experiment/Run group import complete
04 Jul 2019 09:47:06,193 DEBUG: Protocol action set import complete
04 Jul 2019 09:47:06,230 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5563:TargetedMS.ImportSkyZip'
04 Jul 2019 09:47:06,410 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-5563:36736974-7f98-1037-b0bb-3013bb9b3bab'
04 Jul 2019 09:47:06,422 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-5563:36736962-7f98-1037-b0bb-3013bb9b3bab'
04 Jul 2019 09:47:06,423 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5563:TargetedMS.ImportSkyZip.Core'
04 Jul 2019 09:47:06,430 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5563:TargetedMS.ImportSkyZip.Output'
04 Jul 2019 09:47:06,431 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-5563:367369fa-7f98-1037-b0bb-3013bb9b3bab'
04 Jul 2019 09:47:06,434 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/INIBIC%20-%20Neopeptides%20OA%20cartilage/@files/export/xar/experiments_and_runs.xar.exploded/Run68579/070119%20data%20enviaada%20a%20panorama%20REAL_2019-07-03_10-45-33/070119%20data%20enviaada%20a%20panorama%20REAL.skyd into the system
04 Jul 2019 09:47:06,437 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/INIBIC%20-%20Neopeptides%20OA%20cartilage/@files/export/xar/experiments_and_runs.xar.exploded/Run68579/070119%20data%20enviaada%20a%20panorama%20REAL_2019-07-03_10-45-33/070119%20data%20enviaada%20a%20panorama%20REAL.skyd into the system
04 Jul 2019 09:47:06,437 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/INIBIC%20-%20Neopeptides%20OA%20cartilage/@files/export/xar/experiments_and_runs.xar.exploded/Run68579/070119%20data%20enviaada%20a%20panorama%20REAL_2019-07-03_10-45-33.sky.zip into the system
04 Jul 2019 09:47:06,442 INFO : Starting import from 070119 data enviaada a panorama REAL_2019-07-03_10-45-33.sky.zip
04 Jul 2019 09:47:06,453 INFO : Starting to import Skyline document from 070119 data enviaada a panorama REAL_2019-07-03_10-45-33.sky.zip
04 Jul 2019 09:47:06,457 INFO : Expanding NIST_human_IT_2012-05-30_7AA.blib
04 Jul 2019 09:47:06,458 INFO : Expanding 070119 data enviaada a panorama REAL.skyd
04 Jul 2019 09:47:06,550 INFO : Expanding 070119 data enviaada a panorama REAL.sky.view
04 Jul 2019 09:47:06,551 INFO : Expanding 070119 data enviaada a panorama REAL.sky
04 Jul 2019 09:47:06,593 WARN : The version of this Skyline document is 4.2. This is newer than the highest supported version 4.1
04 Jul 2019 09:47:07,129 INFO : Inserting sp|P08493|MGP_HUMAN
04 Jul 2019 09:47:08,661 INFO : Total peptides inserted: 2
04 Jul 2019 09:47:08,662 INFO : Inserting sp|P49747|COMP_HUMAN
04 Jul 2019 09:47:10,864 INFO : Total peptides inserted: 3
04 Jul 2019 09:47:10,865 INFO : Inserting sp|O75339|CILP1_HUMAN
04 Jul 2019 09:47:12,746 INFO : Total peptides inserted: 3
04 Jul 2019 09:47:12,747 INFO : Inserting sp|P51888|PRELP_HUMAN
04 Jul 2019 09:47:15,009 INFO : Total peptides inserted: 4
04 Jul 2019 09:47:15,010 INFO : Inserting sp|P02751|FINC_HUMAN
04 Jul 2019 09:47:16,249 INFO : Total peptides inserted: 2
04 Jul 2019 09:47:16,249 INFO : Inserting sp|P81605|DCD_HUMAN
04 Jul 2019 09:47:17,455 INFO : Total peptides inserted: 2
04 Jul 2019 09:47:17,456 INFO : Inserting sp|P10909|CLUS_HUMAN
04 Jul 2019 09:47:19,184 INFO : Total peptides inserted: 3
04 Jul 2019 09:47:19,185 INFO : Inserting sp|P07093|GDN_HUMAN
04 Jul 2019 09:47:20,499 INFO : Total peptides inserted: 2
04 Jul 2019 09:47:20,500 INFO : Inserting sp|P02458|CO2A1_HUMAN
04 Jul 2019 09:47:21,766 INFO : Total peptides inserted: 2
04 Jul 2019 09:47:26,716 INFO : Completed import of Skyline document from 070119 data enviaada a panorama REAL_2019-07-03_10-45-33.sky.zip
04 Jul 2019 09:47:26,721 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/INIBIC%20-%20Neopeptides%20OA%20cartilage/@files/export/xar/experiments_and_runs.xar.exploded/Run68579/070119%20data%20enviaada%20a%20panorama%20REAL_2019-07-03_10-45-33.sky.zip into the system
04 Jul 2019 09:47:26,732 INFO : Done importing xar
04 Jul 2019 09:47:26,735 INFO : Loading etl definitions
04 Jul 2019 09:47:26,739 INFO : Loading wikis
04 Jul 2019 09:47:26,785 INFO : 0 wikis imported
04 Jul 2019 09:47:26,785 INFO : Done importing wikis
04 Jul 2019 09:47:26,813 INFO : Loading pages and webpart properties
04 Jul 2019 09:47:27,007 INFO : Done importing pages and webpart properties
04 Jul 2019 09:47:27,007 INFO :
04 Jul 2019 09:47:27,008 INFO : Experiment import completed successfully.
04 Jul 2019 09:47:27,008 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentImportTask'
04 Jul 2019 09:47:27,072 INFO : Starting to run task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
04 Jul 2019 09:47:27,072 INFO :
04 Jul 2019 09:47:27,072 INFO : Finishing up experiment copy.
04 Jul 2019 09:47:27,075 INFO : Creating a new TargetedMS experiment entry in targetedms.ExperimentAnnotations.
04 Jul 2019 09:47:27,226 INFO : Updating access URL to point to the new copy of the data.
04 Jul 2019 09:47:27,348 INFO : Setting the 'copied' timestamp on the JournalExperiment table.
04 Jul 2019 09:47:27,351 INFO : Removing copy permissions given to journal.
04 Jul 2019 09:47:27,384 INFO : Adding read permissions to all users that are folder admins in the source container.
04 Jul 2019 09:47:27,401 INFO : Setting the TargetedMS folder type to 'Experimental Data'
04 Jul 2019 09:47:27,416 INFO : Updating the 'Raw Data' tab configuration
04 Jul 2019 09:47:27,423 INFO : Updating dataFileUrls for run 070119 data enviaada a panorama REAL_2019-07-03_10-45-33.sky.zip; targetedms run ID 69643
04 Jul 2019 09:47:27,424 INFO : Updating dataFileUrl...
04 Jul 2019 09:47:27,424 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/INIBIC%20-%20Neopeptides%20OA%20cartilage/@files/export/xar/experiments_and_runs.xar.exploded/Run68579/070119%20data%20enviaada%20a%20panorama%20REAL_2019-07-03_10-45-33/070119%20data%20enviaada%20a%20panorama%20REAL.skyd
04 Jul 2019 09:47:27,425 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/INIBIC%20-%20Neopeptides%20OA%20cartilage/@files/070119%20data%20enviaada%20a%20panorama%20REAL_2019-07-03_10-45-33/070119%20data%20enviaada%20a%20panorama%20REAL.skyd
04 Jul 2019 09:47:27,431 INFO : Updating dataFileUrl...
04 Jul 2019 09:47:27,432 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/INIBIC%20-%20Neopeptides%20OA%20cartilage/@files/export/xar/experiments_and_runs.xar.exploded/Run68579/070119%20data%20enviaada%20a%20panorama%20REAL_2019-07-03_10-45-33.sky.zip
04 Jul 2019 09:47:27,432 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/INIBIC%20-%20Neopeptides%20OA%20cartilage/@files/070119%20data%20enviaada%20a%20panorama%20REAL_2019-07-03_10-45-33.sky.zip
04 Jul 2019 09:47:27,473 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask'