05 Sep 2019 21:57:59,463 INFO : Copying experiment "Reference glycan structure libraries of primary human cardiomyocytes and pluripotent stem cell-derived cardiomyocytes reveal cell-type and culture stage-specific glycan phenotypes" from folder /U of Nebraska Medical Center - Gundry Lab/CM Glyco Diff Manuscript to /Panorama Public/2019/Gundry Lab - CM Glyco Diff Manuscript
05 Sep 2019 21:57:59,464 INFO : =======================================
05 Sep 2019 21:57:59,890 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
05 Sep 2019 21:57:59,891 INFO :
05 Sep 2019 21:57:59,891 INFO : Exporting experiment.
05 Sep 2019 22:00:41,969 INFO :
05 Sep 2019 22:00:41,969 INFO : Experiment export completed successfully.
05 Sep 2019 22:00:41,970 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentExportTask'
05 Sep 2019 22:00:42,087 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
05 Sep 2019 22:00:42,088 INFO :
05 Sep 2019 22:00:42,088 INFO : Importing experiment.
05 Sep 2019 22:00:42,309 INFO : Loading folder properties (folder type, settings and active modules)
05 Sep 2019 22:00:42,498 INFO : Done importing folder properties (folder type, settings and active modules)
05 Sep 2019 22:00:42,507 INFO : Loading etl definitions
05 Sep 2019 22:00:42,514 INFO : Loading wikis
05 Sep 2019 22:00:42,535 INFO : 0 wikis imported
05 Sep 2019 22:00:42,535 INFO : Done importing wikis
05 Sep 2019 22:02:42,475 INFO : Loading xar
05 Sep 2019 22:02:53,025 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-5911:TargetedMS.ImportSkyZip'
05 Sep 2019 22:02:53,035 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-5911:TargetedMS.ImportSkyZip.Core'
05 Sep 2019 22:02:53,042 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-5911:TargetedMS.ImportSkyZip.Output'
05 Sep 2019 22:02:53,042 DEBUG: Protocol import complete
05 Sep 2019 22:02:53,109 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-5911:Reference+glycan+structure+libraries+of+primary+human+cardiomyocytes+and+pluripotent+stem+cell-derived+cardiomyocytes+reveal+cell-type+and+culture+stage-specific+glycan+phenotypes'
05 Sep 2019 22:02:53,109 DEBUG: Experiment/Run group import complete
05 Sep 2019 22:02:53,139 DEBUG: Protocol action set import complete
05 Sep 2019 22:02:53,246 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5911:TargetedMS.ImportSkyZip'
05 Sep 2019 22:02:53,534 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-5911:eea78f08-265f-1037-a6dd-3013bb9b5a14'
05 Sep 2019 22:02:53,548 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-5911:98719738-2661-1037-a6dd-3013bb9b5a14'
05 Sep 2019 22:02:53,549 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5911:TargetedMS.ImportSkyZip.Core'
05 Sep 2019 22:02:53,557 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5911:TargetedMS.ImportSkyZip.Output'
05 Sep 2019 22:02:53,559 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-5911:987197a4-2661-1037-a6dd-3013bb9b5a14'
05 Sep 2019 22:02:53,574 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5911:TargetedMS.ImportSkyZip'
05 Sep 2019 22:02:53,590 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-5911:d1f19f17-28aa-1037-a6dd-3013bb9b5a14'
05 Sep 2019 22:02:53,602 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-5911:d1f19eff-28aa-1037-a6dd-3013bb9b5a14'
05 Sep 2019 22:02:53,602 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5911:TargetedMS.ImportSkyZip.Core'
05 Sep 2019 22:02:53,608 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5911:TargetedMS.ImportSkyZip.Output'
05 Sep 2019 22:02:53,610 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-5911:d1f19f92-28aa-1037-a6dd-3013bb9b5a14'
05 Sep 2019 22:02:53,625 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5911:TargetedMS.ImportSkyZip'
05 Sep 2019 22:02:53,641 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-5911:eea78d19-265f-1037-a6dd-3013bb9b5a14'
05 Sep 2019 22:02:53,653 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-5911:eea78d75-265f-1037-a6dd-3013bb9b5a14'
05 Sep 2019 22:02:53,653 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5911:TargetedMS.ImportSkyZip.Core'
05 Sep 2019 22:02:53,697 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5911:TargetedMS.ImportSkyZip.Output'
05 Sep 2019 22:02:53,699 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-5911:eea7a92b-265f-1037-a6dd-3013bb9b5a14'
05 Sep 2019 22:02:53,714 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5911:TargetedMS.ImportSkyZip'
05 Sep 2019 22:02:53,746 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-5911:b114ba98-296f-1037-a6dd-3013bb9b5a14'
05 Sep 2019 22:02:53,758 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-5911:b114ba80-296f-1037-a6dd-3013bb9b5a14'
05 Sep 2019 22:02:53,759 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5911:TargetedMS.ImportSkyZip.Core'
05 Sep 2019 22:02:53,765 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5911:TargetedMS.ImportSkyZip.Output'
05 Sep 2019 22:02:53,767 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-5911:b114bb2d-296f-1037-a6dd-3013bb9b5a14'
05 Sep 2019 22:02:53,786 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5911:TargetedMS.ImportSkyZip'
05 Sep 2019 22:02:53,802 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-5911:0a331d8e-2667-1037-a6dd-3013bb9b5a14'
05 Sep 2019 22:02:53,814 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-5911:0a331d7c-2667-1037-a6dd-3013bb9b5a14'
05 Sep 2019 22:02:53,814 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5911:TargetedMS.ImportSkyZip.Core'
05 Sep 2019 22:02:53,821 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5911:TargetedMS.ImportSkyZip.Output'
05 Sep 2019 22:02:53,822 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-5911:0a331da3-2667-1037-a6dd-3013bb9b5a14'
05 Sep 2019 22:02:53,825 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/Gundry%20Lab%20-%20CM%20Glyco%20Diff%20Manuscript/@files/export/xar/experiments_and_runs.xar.exploded/Run58385/20190311_hPSCCM_OG.sky.zip into the system
05 Sep 2019 22:02:53,831 INFO : Starting import from 20190311_hPSCCM_OG.sky.zip
05 Sep 2019 22:02:53,840 INFO : Starting to import Skyline document from 20190311_hPSCCM_OG.sky.zip
05 Sep 2019 22:02:53,850 INFO : Expanding CA_Dextran_Library_3_13.blib
05 Sep 2019 22:02:53,852 INFO : Expanding 20190311_hPSCCM_OG.skyd
05 Sep 2019 22:02:54,198 INFO : Expanding 20190311_hPSCCM_OG.sky.view
05 Sep 2019 22:02:54,199 INFO : Expanding 20190311_hPSCCM_OG.sky
05 Sep 2019 22:02:54,218 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1
05 Sep 2019 22:02:54,474 INFO : Inserting Library Molecules
05 Sep 2019 22:02:56,739 INFO : Total molecules inserted: 7
05 Sep 2019 22:02:56,739 INFO : Inserting Core-1 O-glycan
05 Sep 2019 22:02:57,203 INFO : Total molecules inserted: 2
05 Sep 2019 22:02:57,204 INFO : Inserting Core-2 O-glycan
05 Sep 2019 22:02:58,109 INFO : Total molecules inserted: 3
05 Sep 2019 22:02:58,115 WARN : Log file is missing. Proceeding without the log.
05 Sep 2019 22:02:59,754 INFO : Completed import of Skyline document from 20190311_hPSCCM_OG.sky.zip
05 Sep 2019 22:02:59,760 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/Gundry%20Lab%20-%20CM%20Glyco%20Diff%20Manuscript/@files/export/xar/experiments_and_runs.xar.exploded/Run58385/20190311_hPSCCM_OG.sky.zip into the system
05 Sep 2019 22:02:59,760 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/Gundry%20Lab%20-%20CM%20Glyco%20Diff%20Manuscript/@files/export/xar/experiments_and_runs.xar.exploded/Run58385/20190311_hPSCCM_OG/20190311_hPSCCM_OG.skyd into the system
05 Sep 2019 22:02:59,761 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/Gundry%20Lab%20-%20CM%20Glyco%20Diff%20Manuscript/@files/export/xar/experiments_and_runs.xar.exploded/Run58385/20190311_hPSCCM_OG/20190311_hPSCCM_OG.skyd into the system
05 Sep 2019 22:02:59,762 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/Gundry%20Lab%20-%20CM%20Glyco%20Diff%20Manuscript/@files/export/xar/experiments_and_runs.xar.exploded/Run59332/20190314_hCMTissue_NG/20190313_hCMTissue_NG.skyd into the system
05 Sep 2019 22:02:59,763 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/Gundry%20Lab%20-%20CM%20Glyco%20Diff%20Manuscript/@files/export/xar/experiments_and_runs.xar.exploded/Run59332/20190314_hCMTissue_NG/20190313_hCMTissue_NG.skyd into the system
05 Sep 2019 22:02:59,763 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/Gundry%20Lab%20-%20CM%20Glyco%20Diff%20Manuscript/@files/export/xar/experiments_and_runs.xar.exploded/Run59332/20190314_hCMTissue_NG.sky.zip into the system
05 Sep 2019 22:02:59,765 INFO : Starting import from 20190314_hCMTissue_NG.sky.zip
05 Sep 2019 22:02:59,768 INFO : Starting to import Skyline document from 20190314_hCMTissue_NG.sky.zip
05 Sep 2019 22:02:59,775 INFO : Expanding 20190313_hCMTissue_NG.skyd
05 Sep 2019 22:02:59,902 INFO : Expanding 20190313_hCMTissue_NG.sky.view
05 Sep 2019 22:02:59,903 INFO : Expanding 20190313_hCMTissue_NG.sky
05 Sep 2019 22:02:59,913 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1
05 Sep 2019 22:03:00,040 INFO : Inserting Library Molecules
05 Sep 2019 22:03:00,327 INFO : Total molecules inserted: 6
05 Sep 2019 22:03:00,327 INFO : Inserting Complex Mono
05 Sep 2019 22:03:01,027 INFO : Total molecules inserted: 13
05 Sep 2019 22:03:01,028 INFO : Inserting Complex Bi
05 Sep 2019 22:03:02,208 INFO : Total molecules inserted: 22
05 Sep 2019 22:03:02,208 INFO : Inserting Complex Tri
05 Sep 2019 22:03:03,135 INFO : Total molecules inserted: 16
05 Sep 2019 22:03:03,135 INFO : Inserting Complex Tetra
05 Sep 2019 22:03:03,524 INFO : Total molecules inserted: 6
05 Sep 2019 22:03:03,524 INFO : Inserting Hybrid
05 Sep 2019 22:03:04,520 INFO : Total molecules inserted: 18
05 Sep 2019 22:03:04,521 INFO : Inserting Paucimannose
05 Sep 2019 22:03:04,856 INFO : Total molecules inserted: 7
05 Sep 2019 22:03:04,856 INFO : Inserting High mannose
05 Sep 2019 22:03:05,804 INFO : Total molecules inserted: 18
05 Sep 2019 22:03:05,810 WARN : Log file is missing. Proceeding without the log.
05 Sep 2019 22:03:07,128 INFO : Completed import of Skyline document from 20190314_hCMTissue_NG.sky.zip
05 Sep 2019 22:03:07,137 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/Gundry%20Lab%20-%20CM%20Glyco%20Diff%20Manuscript/@files/export/xar/experiments_and_runs.xar.exploded/Run59332/20190314_hCMTissue_NG.sky.zip into the system
05 Sep 2019 22:03:07,138 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/Gundry%20Lab%20-%20CM%20Glyco%20Diff%20Manuscript/@files/export/xar/experiments_and_runs.xar.exploded/Run58383/20190308_hPSCCM_NG.sky.zip into the system
05 Sep 2019 22:03:07,142 INFO : Starting import from 20190308_hPSCCM_NG.sky.zip
05 Sep 2019 22:03:07,148 INFO : Starting to import Skyline document from 20190308_hPSCCM_NG.sky.zip
05 Sep 2019 22:03:07,387 INFO : Expanding CA_Dextran_Library_3_13.blib
05 Sep 2019 22:03:07,390 INFO : Expanding 20190308_hPSCCM_NG.skyd
05 Sep 2019 22:03:12,252 INFO : Expanding 20190308_hPSCCM_NG.sky.view
05 Sep 2019 22:03:12,253 INFO : Expanding 20190308_hPSCCM_NG.sky
05 Sep 2019 22:03:12,350 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1
05 Sep 2019 22:03:13,982 INFO : Inserting Library Molecules
05 Sep 2019 22:03:16,102 INFO : Total molecules inserted: 6
05 Sep 2019 22:03:16,103 INFO : Inserting Complex Mono
05 Sep 2019 22:03:19,730 INFO : Total molecules inserted: 10
05 Sep 2019 22:03:19,731 INFO : Inserting Complex Bi
05 Sep 2019 22:03:39,328 INFO : Total molecules inserted: 40
05 Sep 2019 22:03:39,329 INFO : Inserting Complex Tri
05 Sep 2019 22:04:06,634 INFO : Inserted 50 molecules
05 Sep 2019 22:04:15,129 INFO : Total molecules inserted: 64
05 Sep 2019 22:04:15,129 INFO : Inserting Complex Tetra
05 Sep 2019 22:04:36,886 INFO : Total molecules inserted: 35
05 Sep 2019 22:04:36,886 INFO : Inserting Hybrid
05 Sep 2019 22:04:47,608 INFO : Total molecules inserted: 24
05 Sep 2019 22:04:47,609 INFO : Inserting Paucimannose
05 Sep 2019 22:04:48,241 INFO : Total molecules inserted: 3
05 Sep 2019 22:04:48,242 INFO : Inserting High Mannose
05 Sep 2019 22:04:52,370 INFO : Total molecules inserted: 10
05 Sep 2019 22:04:52,371 INFO : Inserting Sulpho- Glycan
05 Sep 2019 22:04:53,735 INFO : Total molecules inserted: 5
05 Sep 2019 22:04:53,736 INFO : Inserting Phospho- Glycan
05 Sep 2019 22:04:55,888 INFO : Total molecules inserted: 8
05 Sep 2019 22:04:55,889 INFO : Inserting Media component
05 Sep 2019 22:04:56,415 INFO : Total molecules inserted: 2
05 Sep 2019 22:04:56,420 WARN : Log file is missing. Proceeding without the log.
05 Sep 2019 22:04:57,936 INFO : Completed import of Skyline document from 20190308_hPSCCM_NG.sky.zip
05 Sep 2019 22:04:57,943 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/Gundry%20Lab%20-%20CM%20Glyco%20Diff%20Manuscript/@files/export/xar/experiments_and_runs.xar.exploded/Run58383/20190308_hPSCCM_NG.sky.zip into the system
05 Sep 2019 22:04:57,943 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/Gundry%20Lab%20-%20CM%20Glyco%20Diff%20Manuscript/@files/export/xar/experiments_and_runs.xar.exploded/Run58383/20190308_hPSCCM_NG/20190308_hPSCCM_NG.skyd into the system
05 Sep 2019 22:04:57,944 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/Gundry%20Lab%20-%20CM%20Glyco%20Diff%20Manuscript/@files/export/xar/experiments_and_runs.xar.exploded/Run58383/20190308_hPSCCM_NG/20190308_hPSCCM_NG.skyd into the system
05 Sep 2019 22:04:57,945 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/Gundry%20Lab%20-%20CM%20Glyco%20Diff%20Manuscript/@files/export/xar/experiments_and_runs.xar.exploded/Run59375/20190315_iRT_GU_2019-03-15/20190315_iRT_GU.skyd into the system
05 Sep 2019 22:04:57,946 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/Gundry%20Lab%20-%20CM%20Glyco%20Diff%20Manuscript/@files/export/xar/experiments_and_runs.xar.exploded/Run59375/20190315_iRT_GU_2019-03-15/20190315_iRT_GU.skyd into the system
05 Sep 2019 22:04:57,946 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/Gundry%20Lab%20-%20CM%20Glyco%20Diff%20Manuscript/@files/export/xar/experiments_and_runs.xar.exploded/Run59375/20190315_iRT_GU_2019-03-15.sky.zip into the system
05 Sep 2019 22:04:57,949 INFO : Starting import from 20190315_iRT_GU_2019-03-15.sky.zip
05 Sep 2019 22:04:57,955 INFO : Starting to import Skyline document from 20190315_iRT_GU_2019-03-15.sky.zip
05 Sep 2019 22:04:57,965 INFO : Expanding CA_Dextran_Library_3_13.blib
05 Sep 2019 22:04:57,966 INFO : Expanding CA_Dextran_Library_3_132.blib
05 Sep 2019 22:04:57,967 INFO : Expanding 20190315_iRT_GU.skyd
05 Sep 2019 22:04:58,244 INFO : Expanding 20190315_iRT_GU.sky.view
05 Sep 2019 22:04:58,244 INFO : Expanding 20190315_iRT_GU.sky
05 Sep 2019 22:04:58,260 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1
05 Sep 2019 22:04:58,831 INFO : Inserting Library Molecules
05 Sep 2019 22:05:05,782 INFO : Total molecules inserted: 9
05 Sep 2019 22:05:05,787 WARN : Log file is missing. Proceeding without the log.
05 Sep 2019 22:05:07,092 INFO : Completed import of Skyline document from 20190315_iRT_GU_2019-03-15.sky.zip
05 Sep 2019 22:05:07,099 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/Gundry%20Lab%20-%20CM%20Glyco%20Diff%20Manuscript/@files/export/xar/experiments_and_runs.xar.exploded/Run59375/20190315_iRT_GU_2019-03-15.sky.zip into the system
05 Sep 2019 22:05:07,100 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/Gundry%20Lab%20-%20CM%20Glyco%20Diff%20Manuscript/@files/export/xar/experiments_and_runs.xar.exploded/Run58412/20190312_CultureComponents/20190311_CultureComponents.skyd into the system
05 Sep 2019 22:05:07,102 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/Gundry%20Lab%20-%20CM%20Glyco%20Diff%20Manuscript/@files/export/xar/experiments_and_runs.xar.exploded/Run58412/20190312_CultureComponents/20190311_CultureComponents.skyd into the system
05 Sep 2019 22:05:07,103 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/Gundry%20Lab%20-%20CM%20Glyco%20Diff%20Manuscript/@files/export/xar/experiments_and_runs.xar.exploded/Run58412/20190312_CultureComponents.sky.zip into the system
05 Sep 2019 22:05:07,107 INFO : Starting import from 20190312_CultureComponents.sky.zip
05 Sep 2019 22:05:07,112 INFO : Starting to import Skyline document from 20190312_CultureComponents.sky.zip
05 Sep 2019 22:05:07,116 INFO : Expanding 20190311_CultureComponents.skyd
05 Sep 2019 22:05:07,209 INFO : Expanding 20190311_CultureComponents.sky.view
05 Sep 2019 22:05:07,210 INFO : Expanding 20190311_CultureComponents.sky
05 Sep 2019 22:05:07,218 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1
05 Sep 2019 22:05:07,272 INFO : Inserting Library Molecules
05 Sep 2019 22:05:07,517 INFO : Total molecules inserted: 7
05 Sep 2019 22:05:07,518 INFO : Inserting Complex Bi
05 Sep 2019 22:05:08,176 INFO : Total molecules inserted: 8
05 Sep 2019 22:05:08,177 INFO : Inserting Media component
05 Sep 2019 22:05:08,438 INFO : Total molecules inserted: 6
05 Sep 2019 22:05:08,443 WARN : Log file is missing. Proceeding without the log.
05 Sep 2019 22:05:09,878 INFO : Completed import of Skyline document from 20190312_CultureComponents.sky.zip
05 Sep 2019 22:05:09,886 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/Gundry%20Lab%20-%20CM%20Glyco%20Diff%20Manuscript/@files/export/xar/experiments_and_runs.xar.exploded/Run58412/20190312_CultureComponents.sky.zip into the system
05 Sep 2019 22:05:09,973 INFO : Done importing xar
05 Sep 2019 22:05:09,980 INFO : Loading pages and webpart properties
05 Sep 2019 22:05:10,157 INFO : Done importing pages and webpart properties
05 Sep 2019 22:05:10,157 INFO :
05 Sep 2019 22:05:10,158 INFO : Experiment import completed successfully.
05 Sep 2019 22:05:10,158 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentImportTask'
05 Sep 2019 22:05:10,221 INFO : Starting to run task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
05 Sep 2019 22:05:10,221 INFO :
05 Sep 2019 22:05:10,222 INFO : Finishing up experiment copy.
05 Sep 2019 22:05:10,223 INFO : Creating a new TargetedMS experiment entry in targetedms.ExperimentAnnotations.
05 Sep 2019 22:05:10,343 INFO : Updating access URL to point to the new copy of the data.
05 Sep 2019 22:05:10,408 INFO : Setting the 'copied' timestamp on the JournalExperiment table.
05 Sep 2019 22:05:10,411 INFO : Removing copy permissions given to journal.
05 Sep 2019 22:05:10,446 INFO : Adding read permissions to all users that are folder admins in the source container.
05 Sep 2019 22:05:10,463 INFO : Setting the TargetedMS folder type to 'Experimental Data'
05 Sep 2019 22:05:10,477 INFO : Updating the 'Raw Data' tab configuration
05 Sep 2019 22:05:10,564 INFO : Updating dataFileUrls for run 20190311_hPSCCM_OG.sky.zip; targetedms run ID 73954
05 Sep 2019 22:05:10,565 INFO : Updating dataFileUrl...
05 Sep 2019 22:05:10,566 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/Gundry%20Lab%20-%20CM%20Glyco%20Diff%20Manuscript/@files/export/xar/experiments_and_runs.xar.exploded/Run58385/20190311_hPSCCM_OG/20190311_hPSCCM_OG.skyd
05 Sep 2019 22:05:10,566 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/Gundry%20Lab%20-%20CM%20Glyco%20Diff%20Manuscript/@files/20190311_hPSCCM_OG/20190311_hPSCCM_OG.skyd
05 Sep 2019 22:05:10,573 INFO : Updating dataFileUrl...
05 Sep 2019 22:05:10,574 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/Gundry%20Lab%20-%20CM%20Glyco%20Diff%20Manuscript/@files/export/xar/experiments_and_runs.xar.exploded/Run58385/20190311_hPSCCM_OG.sky.zip
05 Sep 2019 22:05:10,574 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/Gundry%20Lab%20-%20CM%20Glyco%20Diff%20Manuscript/@files/20190311_hPSCCM_OG.sky.zip
05 Sep 2019 22:05:10,594 INFO : Updating dataFileUrls for run 20190314_hCMTissue_NG.sky.zip; targetedms run ID 73955
05 Sep 2019 22:05:10,595 INFO : Updating dataFileUrl...
05 Sep 2019 22:05:10,595 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/Gundry%20Lab%20-%20CM%20Glyco%20Diff%20Manuscript/@files/export/xar/experiments_and_runs.xar.exploded/Run59332/20190314_hCMTissue_NG.sky.zip
05 Sep 2019 22:05:10,596 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/Gundry%20Lab%20-%20CM%20Glyco%20Diff%20Manuscript/@files/20190314_hCMTissue_NG.sky.zip
05 Sep 2019 22:05:10,615 INFO : Updating dataFileUrl...
05 Sep 2019 22:05:10,616 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/Gundry%20Lab%20-%20CM%20Glyco%20Diff%20Manuscript/@files/export/xar/experiments_and_runs.xar.exploded/Run59332/20190314_hCMTissue_NG/20190313_hCMTissue_NG.skyd
05 Sep 2019 22:05:10,616 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/Gundry%20Lab%20-%20CM%20Glyco%20Diff%20Manuscript/@files/20190314_hCMTissue_NG/20190313_hCMTissue_NG.skyd
05 Sep 2019 22:05:10,625 INFO : Updating dataFileUrls for run 20190308_hPSCCM_NG.sky.zip; targetedms run ID 73956
05 Sep 2019 22:05:10,626 INFO : Updating dataFileUrl...
05 Sep 2019 22:05:10,626 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/Gundry%20Lab%20-%20CM%20Glyco%20Diff%20Manuscript/@files/export/xar/experiments_and_runs.xar.exploded/Run58383/20190308_hPSCCM_NG/20190308_hPSCCM_NG.skyd
05 Sep 2019 22:05:10,627 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/Gundry%20Lab%20-%20CM%20Glyco%20Diff%20Manuscript/@files/20190308_hPSCCM_NG/20190308_hPSCCM_NG.skyd
05 Sep 2019 22:05:10,632 INFO : Updating dataFileUrl...
05 Sep 2019 22:05:10,632 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/Gundry%20Lab%20-%20CM%20Glyco%20Diff%20Manuscript/@files/export/xar/experiments_and_runs.xar.exploded/Run58383/20190308_hPSCCM_NG.sky.zip
05 Sep 2019 22:05:10,633 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/Gundry%20Lab%20-%20CM%20Glyco%20Diff%20Manuscript/@files/20190308_hPSCCM_NG.sky.zip
05 Sep 2019 22:05:10,642 INFO : Updating dataFileUrls for run 20190315_iRT_GU_2019-03-15.sky.zip; targetedms run ID 73957
05 Sep 2019 22:05:10,643 INFO : Updating dataFileUrl...
05 Sep 2019 22:05:10,643 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/Gundry%20Lab%20-%20CM%20Glyco%20Diff%20Manuscript/@files/export/xar/experiments_and_runs.xar.exploded/Run59375/20190315_iRT_GU_2019-03-15.sky.zip
05 Sep 2019 22:05:10,643 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/Gundry%20Lab%20-%20CM%20Glyco%20Diff%20Manuscript/@files/20190315_iRT_GU_2019-03-15.sky.zip
05 Sep 2019 22:05:10,649 INFO : Updating dataFileUrl...
05 Sep 2019 22:05:10,649 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/Gundry%20Lab%20-%20CM%20Glyco%20Diff%20Manuscript/@files/export/xar/experiments_and_runs.xar.exploded/Run59375/20190315_iRT_GU_2019-03-15/20190315_iRT_GU.skyd
05 Sep 2019 22:05:10,650 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/Gundry%20Lab%20-%20CM%20Glyco%20Diff%20Manuscript/@files/20190315_iRT_GU_2019-03-15/20190315_iRT_GU.skyd
05 Sep 2019 22:05:10,659 INFO : Updating dataFileUrls for run 20190312_CultureComponents.sky.zip; targetedms run ID 73958
05 Sep 2019 22:05:10,659 INFO : Updating dataFileUrl...
05 Sep 2019 22:05:10,660 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/Gundry%20Lab%20-%20CM%20Glyco%20Diff%20Manuscript/@files/export/xar/experiments_and_runs.xar.exploded/Run58412/20190312_CultureComponents.sky.zip
05 Sep 2019 22:05:10,660 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/Gundry%20Lab%20-%20CM%20Glyco%20Diff%20Manuscript/@files/20190312_CultureComponents.sky.zip
05 Sep 2019 22:05:10,666 INFO : Updating dataFileUrl...
05 Sep 2019 22:05:10,666 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/Gundry%20Lab%20-%20CM%20Glyco%20Diff%20Manuscript/@files/export/xar/experiments_and_runs.xar.exploded/Run58412/20190312_CultureComponents/20190311_CultureComponents.skyd
05 Sep 2019 22:05:10,666 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/Gundry%20Lab%20-%20CM%20Glyco%20Diff%20Manuscript/@files/20190312_CultureComponents/20190311_CultureComponents.skyd
05 Sep 2019 22:05:15,560 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask'