13 Sep 2019 12:06:17,339 INFO : Copying experiment "FeS protein levels in Arabidopsis plants expressing a mutated NEET protein" from folder /U of Missouri – Gehrke Proteomics Center/Mittler Fe-S proteins to /Panorama Public/2019/Gehrke Proteomics Center - Mittler Fe-S proteins

13 Sep 2019 12:06:17,346 INFO : =======================================

13 Sep 2019 12:14:44,321 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentExportTask' at location 'webserver-high-priority'

13 Sep 2019 12:14:44,324 INFO : 

13 Sep 2019 12:14:44,324 INFO : Exporting experiment.

13 Sep 2019 12:15:18,080 INFO : 

13 Sep 2019 12:15:18,081 INFO : Experiment export completed successfully.

13 Sep 2019 12:15:18,081 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentExportTask'

13 Sep 2019 12:15:37,314 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentImportTask' at location 'webserver-high-priority'

13 Sep 2019 12:15:37,314 INFO : 

13 Sep 2019 12:15:37,315 INFO : Importing experiment.

13 Sep 2019 12:15:37,348 INFO : Loading folder properties (folder type, settings and active modules)

13 Sep 2019 12:15:37,879 INFO : Done importing folder properties (folder type, settings and active modules)

13 Sep 2019 12:15:37,886 INFO : Loading etl definitions

13 Sep 2019 12:15:37,891 INFO : Loading wikis

13 Sep 2019 12:15:37,923 INFO : 0 wikis imported

13 Sep 2019 12:15:37,924 INFO : Done importing wikis

13 Sep 2019 12:15:43,974 INFO : Loading xar

13 Sep 2019 12:15:47,077 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-5932:TargetedMS.ImportSkyZip'

13 Sep 2019 12:15:47,079 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-5932:TargetedMS.ImportSkyZip.Core'

13 Sep 2019 12:15:47,082 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-5932:TargetedMS.ImportSkyZip.Output'

13 Sep 2019 12:15:47,082 DEBUG: Protocol import complete

13 Sep 2019 12:15:47,143 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-5932:FeS+levels+in+Arabidopsis+plants+expression+a+mutated+NEET+protein'

13 Sep 2019 12:15:47,143 DEBUG: Experiment/Run group import complete

13 Sep 2019 12:15:47,180 DEBUG: Protocol action set import complete

13 Sep 2019 12:15:47,190 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5932:TargetedMS.ImportSkyZip'

13 Sep 2019 12:15:47,368 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-5932:594ecfb7-b87c-1037-8e51-3013bb9b3181'

13 Sep 2019 12:15:47,381 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-5932:594ecf48-b87c-1037-8e51-3013bb9b3181'

13 Sep 2019 12:15:47,382 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5932:TargetedMS.ImportSkyZip.Core'

13 Sep 2019 12:15:47,390 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-5932:TargetedMS.ImportSkyZip.Output'

13 Sep 2019 12:15:47,391 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-5932:594ed04d-b87c-1037-8e51-3013bb9b3181'

13 Sep 2019 12:15:47,393 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/Gehrke%20Proteomics%20Center%20-%20Mittler%20Fe-S%20proteins/@files/export/xar/experiments_and_runs.xar.exploded/Run73265/Sara_FeS_2019-09-13_12-49-52/Sara_FeS.skyd into the system

13 Sep 2019 12:15:47,396 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/Gehrke%20Proteomics%20Center%20-%20Mittler%20Fe-S%20proteins/@files/export/xar/experiments_and_runs.xar.exploded/Run73265/Sara_FeS_2019-09-13_12-49-52/Sara_FeS.skyd into the system

13 Sep 2019 12:15:47,396 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2019/Gehrke%20Proteomics%20Center%20-%20Mittler%20Fe-S%20proteins/@files/export/xar/experiments_and_runs.xar.exploded/Run73265/Sara_FeS_2019-09-13_12-49-52.sky.zip into the system

13 Sep 2019 12:15:47,401 INFO : Starting import from Sara_FeS_2019-09-13_12-49-52.sky.zip

13 Sep 2019 12:15:47,410 INFO : Starting to import Skyline document from Sara_FeS_2019-09-13_12-49-52.sky.zip

13 Sep 2019 12:15:47,423 INFO : Expanding SaraAt.protdb

13 Sep 2019 12:15:52,820 INFO : Expanding Sara_FeS.skyd

13 Sep 2019 12:15:53,042 INFO : Expanding Sara_FeS.sky.view

13 Sep 2019 12:15:53,042 INFO : Expanding Sara_FeS.sky

13 Sep 2019 12:15:53,057 WARN : The version of this Skyline document is 19.1. This is newer than the highest supported version 4.1

13 Sep 2019 12:15:53,175 INFO : Inserting PetC

13 Sep 2019 12:15:53,797 INFO : Total peptides inserted: 5

13 Sep 2019 12:15:53,876 INFO : Inserting PAO

13 Sep 2019 12:15:54,391 INFO : Total peptides inserted: 5

13 Sep 2019 12:15:54,435 INFO : Inserting CAO

13 Sep 2019 12:15:55,174 INFO : Total peptides inserted: 6

13 Sep 2019 12:15:55,224 INFO : Inserting TIC55

13 Sep 2019 12:15:55,869 INFO : Total peptides inserted: 6

13 Sep 2019 12:15:55,910 INFO : Inserting FD1

13 Sep 2019 12:15:56,056 INFO : Total peptides inserted: 1

13 Sep 2019 12:15:56,071 INFO : Inserting FDC1

13 Sep 2019 12:15:56,274 INFO : Total peptides inserted: 2

13 Sep 2019 12:15:56,297 INFO : Inserting FDGOGAT-GLU1

13 Sep 2019 12:15:57,079 INFO : Total peptides inserted: 8

13 Sep 2019 12:15:57,105 INFO : Inserting FDGOGAT-GLU2

13 Sep 2019 12:15:57,926 INFO : Total peptides inserted: 8

13 Sep 2019 12:15:57,966 INFO : Inserting PsaA

13 Sep 2019 12:15:58,428 INFO : Total peptides inserted: 5

13 Sep 2019 12:15:58,513 INFO : Inserting PsaB

13 Sep 2019 12:15:58,902 INFO : Total peptides inserted: 4

13 Sep 2019 12:15:58,933 INFO : Inserting PsaC

13 Sep 2019 12:15:59,019 INFO : Total peptides inserted: 1

13 Sep 2019 12:15:59,041 INFO : Inserting HCF101

13 Sep 2019 12:15:59,670 INFO : Total peptides inserted: 6

13 Sep 2019 12:15:59,746 INFO : Inserting NDUS7

13 Sep 2019 12:15:59,867 INFO : Total peptides inserted: 1

13 Sep 2019 12:15:59,903 INFO : Inserting PSBG

13 Sep 2019 12:16:00,136 INFO : Total peptides inserted: 3

13 Sep 2019 12:16:00,165 INFO : Inserting NDHI

13 Sep 2019 12:16:00,446 INFO : Total peptides inserted: 3

13 Sep 2019 12:16:00,512 INFO : Inserting NiR1

13 Sep 2019 12:16:01,063 INFO : Total peptides inserted: 6

13 Sep 2019 12:16:01,095 INFO : Inserting SiR

13 Sep 2019 12:16:01,714 INFO : Total peptides inserted: 6

13 Sep 2019 12:16:01,728 INFO : Inserting SiRB

13 Sep 2019 12:16:01,959 INFO : Total peptides inserted: 2

13 Sep 2019 12:16:01,965 WARN : Log file is missing. Proceeding without the log.

13 Sep 2019 12:16:03,634 INFO : Completed import of Skyline document from Sara_FeS_2019-09-13_12-49-52.sky.zip

13 Sep 2019 12:16:03,641 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2019/Gehrke%20Proteomics%20Center%20-%20Mittler%20Fe-S%20proteins/@files/export/xar/experiments_and_runs.xar.exploded/Run73265/Sara_FeS_2019-09-13_12-49-52.sky.zip into the system

13 Sep 2019 12:16:03,662 INFO : Done importing xar

13 Sep 2019 12:16:03,666 INFO : Loading pages and webpart properties

13 Sep 2019 12:16:03,826 INFO : Done importing pages and webpart properties

13 Sep 2019 12:16:03,827 INFO : 

13 Sep 2019 12:16:03,827 INFO : Experiment import completed successfully.

13 Sep 2019 12:16:03,828 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentImportTask'

13 Sep 2019 12:16:03,931 INFO : Starting to run task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'

13 Sep 2019 12:16:03,940 INFO : 

13 Sep 2019 12:16:03,941 INFO : Finishing up experiment copy.

13 Sep 2019 12:16:03,943 INFO : Creating a new TargetedMS experiment entry in targetedms.ExperimentAnnotations.

13 Sep 2019 12:16:04,082 INFO : Updating access URL to point to the new copy of the data.

13 Sep 2019 12:16:04,130 INFO : Setting the 'copied' timestamp on the JournalExperiment table.

13 Sep 2019 12:16:04,132 INFO : Removing copy permissions given to journal.

13 Sep 2019 12:16:04,199 INFO : Adding read permissions to all users that are folder admins in the source container.

13 Sep 2019 12:16:04,217 INFO : Setting the TargetedMS folder type to 'Experimental Data'

13 Sep 2019 12:16:04,231 INFO : Updating the 'Raw Data' tab configuration

13 Sep 2019 12:16:04,238 INFO : Updating dataFileUrls for run Sara_FeS_2019-09-13_12-49-52.sky.zip; targetedms run ID 74381

13 Sep 2019 12:16:04,238 INFO : Updating dataFileUrl...

13 Sep 2019 12:16:04,238 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/Gehrke%20Proteomics%20Center%20-%20Mittler%20Fe-S%20proteins/@files/export/xar/experiments_and_runs.xar.exploded/Run73265/Sara_FeS_2019-09-13_12-49-52.sky.zip

13 Sep 2019 12:16:04,239 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/Gehrke%20Proteomics%20Center%20-%20Mittler%20Fe-S%20proteins/@files/Sara_FeS_2019-09-13_12-49-52.sky.zip

13 Sep 2019 12:16:04,245 INFO : Updating dataFileUrl...

13 Sep 2019 12:16:04,246 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/Gehrke%20Proteomics%20Center%20-%20Mittler%20Fe-S%20proteins/@files/export/xar/experiments_and_runs.xar.exploded/Run73265/Sara_FeS_2019-09-13_12-49-52/Sara_FeS.skyd

13 Sep 2019 12:16:04,246 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/Gehrke%20Proteomics%20Center%20-%20Mittler%20Fe-S%20proteins/@files/Sara_FeS_2019-09-13_12-49-52/Sara_FeS.skyd

13 Sep 2019 12:16:05,644 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask'