Copying experiment: Cell cycle validation

Cristea Lab - Heart Proteome

Job Status

Created: 2019-06-13 09:23:37
Modified: 2020-04-21 03:59:14
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Copying experiment: Cell cycle validation
File Path: /data/labkey/files/Panorama Public/2019/Cristea Lab - Heart Proteome/@files/Experiment_510.log
Files: Experiment_510.log

Log File


13 Jun 2019 09:23:37,526 INFO : Copying experiment "Cell cycle validation" from folder /Princeton University - Cristea Lab/Heart Proteome to /Panorama Public/2019/Cristea Lab - Heart Proteome
13 Jun 2019 09:23:37,526 INFO : =======================================
13 Jun 2019 09:53:22,272 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
13 Jun 2019 09:53:22,272 INFO :
13 Jun 2019 09:53:22,272 INFO : Exporting experiment.
13 Jun 2019 09:53:33,973 INFO :
13 Jun 2019 09:53:33,973 INFO : Experiment export completed successfully.
13 Jun 2019 09:53:33,974 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentExportTask'
13 Jun 2019 09:55:38,305 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
13 Jun 2019 09:55:38,306 INFO :
13 Jun 2019 09:55:38,306 INFO : Importing experiment.
13 Jun 2019 09:55:38,327 INFO : Loading folder properties (folder type, settings and active modules)
13 Jun 2019 09:55:38,583 INFO : Done importing folder properties (folder type, settings and active modules)
13 Jun 2019 09:55:38,586 INFO : Loading xar
13 Jun 2019 09:55:41,452 INFO : Starting import from kcp_prm_2019-06-09_13-38-37.sky.zip
13 Jun 2019 09:55:41,460 INFO : Starting to import Skyline document from kcp_prm_2019-06-09_13-38-37.sky.zip
13 Jun 2019 09:55:41,463 INFO : Expanding mouse.protdb
13 Jun 2019 09:55:44,020 INFO : Expanding 20190516_UNC_DDA.blib
13 Jun 2019 09:55:44,644 INFO : Expanding 20190515_missing.blib
13 Jun 2019 09:55:44,646 INFO : Expanding 20190520_missing2.blib
13 Jun 2019 09:55:44,647 INFO : Expanding kcp.blib
13 Jun 2019 09:55:44,648 INFO : Expanding kcp2.blib
13 Jun 2019 09:55:44,649 INFO : Expanding kcp3.blib
13 Jun 2019 09:55:44,650 INFO : Expanding UNC_PRM_Compex_runs.blib
13 Jun 2019 09:55:44,653 INFO : Expanding kcp_prm.skyd
13 Jun 2019 09:55:44,688 INFO : Expanding kcp_prm.sky.view
13 Jun 2019 09:55:44,688 INFO : Expanding kcp_prm.sky
13 Jun 2019 09:55:44,691 WARN : The version of this Skyline document is 4.22. This is newer than the highest supported version 4.1
13 Jun 2019 09:55:45,055 INFO : Inserting sp|Q9IBG7|KCP_XENLA
13 Jun 2019 09:55:45,282 INFO : Total peptides inserted: 2
13 Jun 2019 09:55:46,971 INFO : Completed import of Skyline document from kcp_prm_2019-06-09_13-38-37.sky.zip
13 Jun 2019 09:55:46,980 INFO : Starting import from Heart_proteome_cell_cycle_validation_2018-04-23_17-08-12.sky.zip
13 Jun 2019 09:55:47,002 INFO : Starting to import Skyline document from Heart_proteome_cell_cycle_validation_2018-04-23_17-08-12.sky.zip
13 Jun 2019 09:55:47,007 INFO : Expanding UNC_PRM.blib
13 Jun 2019 09:55:47,012 INFO : Expanding Heart_proteome_cell_cycle_validation.skyd
13 Jun 2019 09:55:47,049 INFO : Expanding Heart_proteome_cell_cycle_validation.sky.view
13 Jun 2019 09:55:47,049 INFO : Expanding Heart_proteome_cell_cycle_validation.sky
13 Jun 2019 09:55:47,056 WARN : The version of this Skyline document is 4.11. This is newer than the highest supported version 4.1
13 Jun 2019 09:55:47,437 INFO : Inserting sp|Q9Y6F1|PARP3_HUMAN
13 Jun 2019 09:55:47,545 INFO : Total peptides inserted: 1
13 Jun 2019 09:55:47,671 INFO : Inserting sp|O75694|NU155_HUMAN
13 Jun 2019 09:55:47,739 INFO : Total peptides inserted: 1
13 Jun 2019 09:55:47,818 INFO : Inserting sp|O43741|AAKB2_HUMAN
13 Jun 2019 09:55:47,998 INFO : Total peptides inserted: 3
13 Jun 2019 09:55:48,119 INFO : Inserting sp|Q7Z7K6|CENPV_HUMAN
13 Jun 2019 09:55:48,201 INFO : Total peptides inserted: 1
13 Jun 2019 09:55:48,316 INFO : Inserting sp|Q29RF7|PDS5A_HUMAN
13 Jun 2019 09:55:48,519 INFO : Total peptides inserted: 3
13 Jun 2019 09:55:48,636 INFO : Inserting sp|O75531|BAF_HUMAN
13 Jun 2019 09:55:48,685 INFO : Total peptides inserted: 1
13 Jun 2019 09:55:48,757 INFO : Inserting tr|B1WB72|B1WB72_XENTR
13 Jun 2019 09:55:48,892 INFO : Total peptides inserted: 2
13 Jun 2019 09:55:48,977 INFO : Inserting sp|Q99873|ANM1_HUMAN
13 Jun 2019 09:55:49,141 INFO : Total peptides inserted: 3
13 Jun 2019 09:55:49,258 INFO : Inserting sp|Q9ULC4|MCTS1_HUMAN
13 Jun 2019 09:55:49,426 INFO : Total peptides inserted: 3
13 Jun 2019 09:55:49,496 INFO : Inserting sp|Q8N1F7|NUP93_HUMAN
13 Jun 2019 09:55:49,663 INFO : Total peptides inserted: 3
13 Jun 2019 09:55:50,067 INFO : Inserting sp|Q14683|SMC1A_HUMAN
13 Jun 2019 09:55:50,244 INFO : Total peptides inserted: 3
13 Jun 2019 09:55:50,335 INFO : Inserting sp|P23258|TBG1_HUMAN
13 Jun 2019 09:55:50,470 INFO : Total peptides inserted: 2
13 Jun 2019 09:55:50,567 INFO : Inserting sp|P51610|HCFC1_HUMAN
13 Jun 2019 09:55:50,751 INFO : Total peptides inserted: 3
13 Jun 2019 09:55:50,832 INFO : Inserting sp|P12270|TPR_HUMAN
13 Jun 2019 09:55:50,938 INFO : Total peptides inserted: 2
13 Jun 2019 09:55:51,074 INFO : Inserting sp|P84090|ERH_HUMAN
13 Jun 2019 09:55:51,130 INFO : Total peptides inserted: 1
13 Jun 2019 09:55:51,208 INFO : Inserting sp|Q16576|RBBP7_HUMAN
13 Jun 2019 09:55:51,349 INFO : Total peptides inserted: 3
13 Jun 2019 09:55:51,428 INFO : Inserting sp|Q92621|NU205_HUMAN
13 Jun 2019 09:55:51,516 INFO : Total peptides inserted: 1
13 Jun 2019 09:55:51,611 INFO : Inserting sp|Q9HC35|EMAL4_HUMAN
13 Jun 2019 09:55:51,804 INFO : Total peptides inserted: 3
13 Jun 2019 09:55:51,882 INFO : Inserting sp|Q96RF0|SNX18_HUMAN
13 Jun 2019 09:55:51,950 INFO : Total peptides inserted: 1
13 Jun 2019 09:55:52,017 INFO : Inserting sp|P37198|NUP62_HUMAN
13 Jun 2019 09:55:52,085 INFO : Total peptides inserted: 1
13 Jun 2019 09:55:52,169 INFO : Inserting sp|Q13185|CBX3_HUMAN
13 Jun 2019 09:55:52,231 INFO : Total peptides inserted: 1
13 Jun 2019 09:55:52,309 INFO : Inserting sp|O14974|MYPT1_HUMAN
13 Jun 2019 09:55:52,382 INFO : Total peptides inserted: 1
13 Jun 2019 09:55:52,437 INFO : Inserting sp|P35813|PPM1A_HUMAN
13 Jun 2019 09:55:52,500 INFO : Total peptides inserted: 1
13 Jun 2019 09:55:52,591 INFO : Inserting sp|P68036|UB2L3_HUMAN
13 Jun 2019 09:55:53,033 INFO : Total peptides inserted: 3
13 Jun 2019 09:55:53,100 INFO : Inserting sp|P54646|AAPK2_HUMAN
13 Jun 2019 09:55:53,215 INFO : Total peptides inserted: 2
13 Jun 2019 09:55:53,292 INFO : Inserting sp|Q9Y371|SHLB1_HUMAN
13 Jun 2019 09:55:53,451 INFO : Total peptides inserted: 3
13 Jun 2019 09:55:53,549 INFO : Inserting sp|Q15691|MARE1_HUMAN
13 Jun 2019 09:55:53,652 INFO : Total peptides inserted: 1
13 Jun 2019 09:55:53,725 INFO : Inserting sp|P43487|RANG_HUMAN
13 Jun 2019 09:55:53,816 INFO : Total peptides inserted: 1
13 Jun 2019 09:55:53,861 INFO : Inserting sp|P55735|SEC13_HUMAN
13 Jun 2019 09:55:53,953 INFO : Total peptides inserted: 2
13 Jun 2019 09:55:54,030 INFO : Inserting sp|Q13123|RED_HUMAN
13 Jun 2019 09:55:54,080 INFO : Total peptides inserted: 1
13 Jun 2019 09:55:54,142 INFO : Inserting sp|P23528|COF1_HUMAN
13 Jun 2019 09:55:54,235 INFO : Total peptides inserted: 1
13 Jun 2019 09:55:54,310 INFO : Inserting sp|P62258|1433E_HUMAN
13 Jun 2019 09:55:54,412 INFO : Total peptides inserted: 2
13 Jun 2019 09:55:54,498 INFO : Inserting sp|P28482|MK01_HUMAN
13 Jun 2019 09:55:54,631 INFO : Total peptides inserted: 2
13 Jun 2019 09:55:56,404 INFO : Completed import of Skyline document from Heart_proteome_cell_cycle_validation_2018-04-23_17-08-12.sky.zip
13 Jun 2019 09:55:56,414 INFO : Starting import from Heart_proteome_cell_cycle_validation_new_20190110_2019-01-14_16-23-15.sky.zip
13 Jun 2019 09:55:56,419 INFO : Starting to import Skyline document from Heart_proteome_cell_cycle_validation_new_20190110_2019-01-14_16-23-15.sky.zip
13 Jun 2019 09:55:56,420 INFO : Expanding UNC60_50cm.blib
13 Jun 2019 09:55:56,420 INFO : Expanding UNC_new_unsch.blib
13 Jun 2019 09:55:56,421 INFO : Expanding 20190110_more.blib
13 Jun 2019 09:55:56,421 INFO : Expanding Heart_proteome_cell_cycle_validation_new_20190110.skyd
13 Jun 2019 09:55:56,440 INFO : Expanding Heart_proteome_cell_cycle_validation_new_20190110.sky.view
13 Jun 2019 09:55:56,440 INFO : Expanding Heart_proteome_cell_cycle_validation_new_20190110.sky
13 Jun 2019 09:55:56,442 INFO : Expanding Heart_proteome_cell_cycle_validation_new_20190110.skyl
13 Jun 2019 09:55:56,445 WARN : The version of this Skyline document is 4.21. This is newer than the highest supported version 4.1
13 Jun 2019 09:55:56,663 INFO : Inserting sp|Q9UQE7|SMC3_HUMAN
13 Jun 2019 09:55:57,057 INFO : Total peptides inserted: 3
13 Jun 2019 09:55:57,123 INFO : Inserting sp|P78406|RAE1L_HUMAN
13 Jun 2019 09:55:57,245 INFO : Total peptides inserted: 2
13 Jun 2019 09:55:57,313 INFO : Inserting sp|P20618|PSB1_HUMAN
13 Jun 2019 09:55:57,448 INFO : Total peptides inserted: 3
13 Jun 2019 09:55:57,490 INFO : Inserting sp|Q13131|AAPK1_HUMAN
13 Jun 2019 09:55:57,555 INFO : Total peptides inserted: 1
13 Jun 2019 09:55:57,625 INFO : Inserting sp|P25788|PSA3_HUMAN
13 Jun 2019 09:55:57,793 INFO : Total peptides inserted: 3
13 Jun 2019 09:55:57,860 INFO : Inserting sp|Q7Z3B4|NUP54_HUMAN
13 Jun 2019 09:55:58,010 INFO : Total peptides inserted: 2
13 Jun 2019 09:55:59,666 INFO : Completed import of Skyline document from Heart_proteome_cell_cycle_validation_new_20190110_2019-01-14_16-23-15.sky.zip
13 Jun 2019 09:55:59,862 INFO : Done importing xar
13 Jun 2019 09:55:59,865 INFO : Loading etl definitions
13 Jun 2019 09:55:59,869 INFO : Loading wikis
13 Jun 2019 09:56:00,411 INFO : 0 wikis imported
13 Jun 2019 09:56:00,411 INFO : Done importing wikis
13 Jun 2019 09:56:03,456 INFO : Loading pages and webpart properties
13 Jun 2019 09:56:03,527 INFO : Done importing pages and webpart properties
13 Jun 2019 09:56:03,560 INFO :
13 Jun 2019 09:56:03,560 INFO : Experiment import completed successfully.
13 Jun 2019 09:56:03,561 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentImportTask'
13 Jun 2019 09:56:03,611 INFO : Starting to run task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
13 Jun 2019 09:56:03,611 INFO :
13 Jun 2019 09:56:03,611 INFO : Finishing up experiment copy.
13 Jun 2019 09:56:03,613 INFO : Creating a new TargetedMS experiment entry in targetedms.ExperimentAnnotations.
13 Jun 2019 09:56:03,686 INFO : Updating access URL to point to the new copy of the data.
13 Jun 2019 09:56:03,787 INFO : Setting the 'copied' timestamp on the JournalExperiment table.
13 Jun 2019 09:56:03,789 INFO : Removing copy permissions given to journal.
13 Jun 2019 09:56:03,833 INFO : Adding read permissions to all users that are folder admins in the source container.
13 Jun 2019 09:56:03,857 INFO : Setting the TargetedMS folder type to 'Experimental Data'
13 Jun 2019 09:56:03,864 INFO : Updating the 'Raw Data' tab configuration
13 Jun 2019 09:56:03,877 INFO : Updating dataFileUrls for run kcp_prm_2019-06-09_13-38-37.sky.zip; targetedms run ID 67921
13 Jun 2019 09:56:03,877 INFO : Updating dataFileUrl...
13 Jun 2019 09:56:03,877 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/Cristea%20Lab%20-%20Heart%20Proteome/@files/export/xar/experiments_and_runs.xar.exploded/Run67130/kcp_prm_2019-06-09_13-38-37/kcp_prm.skyd
13 Jun 2019 09:56:03,877 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/Cristea%20Lab%20-%20Heart%20Proteome/@files/kcp_prm_2019-06-09_13-38-37/kcp_prm.skyd
13 Jun 2019 09:56:03,881 INFO : Updating dataFileUrl...
13 Jun 2019 09:56:03,881 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/Cristea%20Lab%20-%20Heart%20Proteome/@files/export/xar/experiments_and_runs.xar.exploded/Run67130/kcp_prm_2019-06-09_13-38-37.sky.zip
13 Jun 2019 09:56:03,881 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/Cristea%20Lab%20-%20Heart%20Proteome/@files/kcp_prm_2019-06-09_13-38-37.sky.zip
13 Jun 2019 09:56:03,890 INFO : Updating dataFileUrls for run Heart_proteome_cell_cycle_validation_2018-04-23_17-08-12.sky.zip; targetedms run ID 67922
13 Jun 2019 09:56:03,891 INFO : Adding ExpData for .skyd file
13 Jun 2019 09:56:03,891 INFO : Updating dataFileUrl...
13 Jun 2019 09:56:03,892 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/Cristea%20Lab%20-%20Heart%20Proteome/@files/export/xar/experiments_and_runs.xar.exploded/Run30110/Heart_proteome_cell_cycle_validation_2018-04-23_17-08-12.sky.zip
13 Jun 2019 09:56:03,892 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/Cristea%20Lab%20-%20Heart%20Proteome/@files/Heart_proteome_cell_cycle_validation_2018-04-23_17-08-12.sky.zip
13 Jun 2019 09:56:03,894 INFO : Updating dataFileUrl...
13 Jun 2019 09:56:03,895 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/Cristea%20Lab%20-%20Heart%20Proteome/@files/export/xar/experiments_and_runs.xar.exploded/Run30110/Heart_proteome_cell_cycle_validation_2018-04-23_17-08-12/Heart_proteome_cell_cycle_validation.skyd
13 Jun 2019 09:56:03,895 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/Cristea%20Lab%20-%20Heart%20Proteome/@files/Heart_proteome_cell_cycle_validation_2018-04-23_17-08-12/Heart_proteome_cell_cycle_validation.skyd
13 Jun 2019 09:56:03,899 INFO : Updating dataFileUrls for run Heart_proteome_cell_cycle_validation_new_20190110_2019-01-14_16-23-15.sky.zip; targetedms run ID 67923
13 Jun 2019 09:56:03,899 INFO : Updating dataFileUrl...
13 Jun 2019 09:56:03,899 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/Cristea%20Lab%20-%20Heart%20Proteome/@files/export/xar/experiments_and_runs.xar.exploded/Run45972/Heart_proteome_cell_cycle_validation_new_20190110_2019-01-14_16-23-15.sky.zip
13 Jun 2019 09:56:03,900 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/Cristea%20Lab%20-%20Heart%20Proteome/@files/Heart_proteome_cell_cycle_validation_new_20190110_2019-01-14_16-23-15.sky.zip
13 Jun 2019 09:56:03,902 INFO : Updating dataFileUrl...
13 Jun 2019 09:56:03,902 INFO : from: file:///data/labkey/files/Panorama%20Public/2019/Cristea%20Lab%20-%20Heart%20Proteome/@files/export/xar/experiments_and_runs.xar.exploded/Run45972/Heart_proteome_cell_cycle_validation_new_20190110_2019-01-14_16-23-15/Heart_proteome_cell_cycle_validation_new_20190110.skyd
13 Jun 2019 09:56:03,902 INFO : to: file:///data/labkey/files/Panorama%20Public/2019/Cristea%20Lab%20-%20Heart%20Proteome/@files/Heart_proteome_cell_cycle_validation_new_20190110_2019-01-14_16-23-15/Heart_proteome_cell_cycle_validation_new_20190110.skyd
13 Jun 2019 09:56:04,134 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask'