03 Jan 2018 15:16:37,002 INFO : Copying experiment "Targeted Proteomics of HDL in People With Type 2 Diabetes" from folder /UW - Vaisar Lab/Data_Share/HDL_T2D_PlosOne to /Panorama Public/2018/Vaisar - HDL_T2D_PlosOne
03 Jan 2018 15:16:37,002 INFO : =======================================
03 Jan 2018 15:16:37,034 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentExportTask' at location 'webserver'
03 Jan 2018 15:16:37,036 INFO :
03 Jan 2018 15:16:37,036 INFO : Exporting experiment.
03 Jan 2018 15:16:38,921 INFO :
03 Jan 2018 15:16:38,921 INFO : Experiment export completed successfully.
03 Jan 2018 15:16:38,921 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentExportTask'
03 Jan 2018 15:16:38,928 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentImportTask' at location 'webserver'
03 Jan 2018 15:16:38,928 INFO :
03 Jan 2018 15:16:38,928 INFO : Importing experiment.
03 Jan 2018 15:16:38,932 INFO : Loading folder properties (folder type, settings and active modules)
03 Jan 2018 15:16:38,962 INFO : Done importing folder properties (folder type, settings and active modules)
03 Jan 2018 15:16:38,965 INFO : Loading container specific module properties
03 Jan 2018 15:16:38,969 INFO : Done importing container specific module properties
03 Jan 2018 15:16:38,971 INFO : Loading xar
03 Jan 2018 15:16:39,164 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-3778:TargetedMS.ImportSkyZip'
03 Jan 2018 15:16:39,168 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-3778:TargetedMS.ImportSkyZip.Core'
03 Jan 2018 15:16:39,171 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-3778:TargetedMS.ImportSkyZip.Output'
03 Jan 2018 15:16:39,171 DEBUG: Protocol import complete
03 Jan 2018 15:16:39,172 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-3778:Targeted+proteomics+of+HDL+in+T2D'
03 Jan 2018 15:16:39,172 DEBUG: Experiment/Run group import complete
03 Jan 2018 15:16:39,186 DEBUG: Protocol action set import complete
03 Jan 2018 15:16:39,240 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3778:TargetedMS.ImportSkyZip'
03 Jan 2018 15:16:39,305 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-3778:1ddef3e8-d2f6-1035-8580-3013bb9b3ac7'
03 Jan 2018 15:16:39,306 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3778:TargetedMS.ImportSkyZip.Core'
03 Jan 2018 15:16:39,309 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3778:TargetedMS.ImportSkyZip.Output'
03 Jan 2018 15:16:39,309 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-3778:1ddef4a9-d2f6-1035-8580-3013bb9b3ac7'
03 Jan 2018 15:16:39,317 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3778:TargetedMS.ImportSkyZip'
03 Jan 2018 15:16:39,324 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-3778:fde9c059-d2f9-1035-8580-3013bb9b3ac7'
03 Jan 2018 15:16:39,324 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3778:TargetedMS.ImportSkyZip.Core'
03 Jan 2018 15:16:39,326 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3778:TargetedMS.ImportSkyZip.Output'
03 Jan 2018 15:16:39,327 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-3778:fde9c109-d2f9-1035-8580-3013bb9b3ac7'
03 Jan 2018 15:16:39,331 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2018/Vaisar%20-%20HDL_T2D_PlosOne/@files/export/xar/experiments_and_runs.xar.exploded/Run25652/HDL_T2D_TexSet1_Panorama_2018-01-03_12-55-44.sky.zip into the system
03 Jan 2018 15:16:39,333 INFO : Starting import from HDL_T2D_TexSet1_Panorama_2018-01-03_12-55-44.sky.zip
03 Jan 2018 15:16:39,341 INFO : Starting to import Skyline document from HDL_T2D_TexSet1_Panorama_2018-01-03_12-55-44.sky.zip
03 Jan 2018 15:16:39,341 INFO : Expanding CLEARP09AB.blib
03 Jan 2018 15:16:39,347 INFO : Expanding HDL_T2D_TexSet1_Panorama.skyd
03 Jan 2018 15:16:39,448 INFO : Expanding HDL_T2D_TexSet1_Panorama.sky.view
03 Jan 2018 15:16:39,448 INFO : Expanding HDL_T2D_TexSet1_Panorama.sky
03 Jan 2018 15:16:39,924 INFO : Inserting SAA1
03 Jan 2018 15:16:40,130 INFO : Inserting ALB
03 Jan 2018 15:16:40,490 INFO : Inserting APOA1
03 Jan 2018 15:16:41,638 INFO : Inserting APOA2
03 Jan 2018 15:16:42,022 INFO : Inserting APOA4
03 Jan 2018 15:16:42,461 INFO : Inserting APOB
03 Jan 2018 15:16:42,901 INFO : Inserting APOC1
03 Jan 2018 15:16:43,288 INFO : Inserting APOC2
03 Jan 2018 15:16:43,685 INFO : Inserting APOC3
03 Jan 2018 15:16:44,210 INFO : Inserting APOC4
03 Jan 2018 15:16:44,557 INFO : Inserting APOD
03 Jan 2018 15:16:44,912 INFO : Inserting APOE
03 Jan 2018 15:16:45,273 INFO : Inserting APOF
03 Jan 2018 15:16:45,635 INFO : Inserting APOH
03 Jan 2018 15:16:46,174 INFO : Inserting APOL1
03 Jan 2018 15:16:46,540 INFO : Inserting APOM
03 Jan 2018 15:16:46,900 INFO : Inserting C3
03 Jan 2018 15:16:47,255 INFO : Inserting C4A
03 Jan 2018 15:16:47,614 INFO : Inserting CETP
03 Jan 2018 15:16:48,055 INFO : Inserting CLU
03 Jan 2018 15:16:48,422 INFO : Inserting HBB
03 Jan 2018 15:16:48,774 INFO : Inserting HPR
03 Jan 2018 15:16:49,259 INFO : Inserting LCAT
03 Jan 2018 15:16:49,685 INFO : Inserting LPA
03 Jan 2018 15:16:50,049 INFO : Inserting LpPLA2
03 Jan 2018 15:16:50,465 INFO : Inserting PCYOX1
03 Jan 2018 15:16:50,830 INFO : Inserting PLTP
03 Jan 2018 15:16:51,196 INFO : Inserting PON1
03 Jan 2018 15:16:51,609 INFO : Inserting PON3
03 Jan 2018 15:16:52,022 INFO : Inserting RBP4
03 Jan 2018 15:16:52,438 INFO : Inserting SAA1_2
03 Jan 2018 15:16:52,852 INFO : Inserting SAA4
03 Jan 2018 15:16:53,251 INFO : Inserting SERPINA1
03 Jan 2018 15:16:53,641 INFO : Inserting SERPINA4
03 Jan 2018 15:16:54,134 INFO : Inserting VDBP
03 Jan 2018 15:16:54,568 INFO : Inserting VTN
03 Jan 2018 15:16:56,187 INFO : Completed import of Skyline document from HDL_T2D_TexSet1_Panorama_2018-01-03_12-55-44.sky.zip
03 Jan 2018 15:16:56,192 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2018/Vaisar%20-%20HDL_T2D_PlosOne/@files/export/xar/experiments_and_runs.xar.exploded/Run25652/HDL_T2D_TexSet1_Panorama_2018-01-03_12-55-44.sky.zip into the system
03 Jan 2018 15:16:56,192 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2018/Vaisar%20-%20HDL_T2D_PlosOne/@files/export/xar/experiments_and_runs.xar.exploded/Run25656/HDL_T2D_TexSet2_Panorama_2018-01-03_14-01-51.sky.zip into the system
03 Jan 2018 15:16:56,195 INFO : Starting import from HDL_T2D_TexSet2_Panorama_2018-01-03_14-01-51.sky.zip
03 Jan 2018 15:16:56,198 INFO : Starting to import Skyline document from HDL_T2D_TexSet2_Panorama_2018-01-03_14-01-51.sky.zip
03 Jan 2018 15:16:56,198 INFO : Expanding CLEARP09AB.blib
03 Jan 2018 15:16:56,204 INFO : Expanding HDL_T2D_TexSet2_Panorama.skyd
03 Jan 2018 15:16:56,286 INFO : Expanding HDL_T2D_TexSet2_Panorama.sky.view
03 Jan 2018 15:16:56,286 INFO : Expanding HDL_T2D_TexSet2_Panorama.sky
03 Jan 2018 15:16:56,449 INFO : Inserting SAA1
03 Jan 2018 15:16:56,520 INFO : Inserting ALB
03 Jan 2018 15:16:56,664 INFO : Inserting APOA1
03 Jan 2018 15:16:57,390 INFO : Inserting APOA2
03 Jan 2018 15:16:57,768 INFO : Inserting APOA4
03 Jan 2018 15:16:58,152 INFO : Inserting APOB
03 Jan 2018 15:16:58,536 INFO : Inserting APOC1
03 Jan 2018 15:16:58,915 INFO : Inserting APOC2
03 Jan 2018 15:16:59,298 INFO : Inserting APOC3
03 Jan 2018 15:16:59,680 INFO : Inserting APOC4
03 Jan 2018 15:17:00,054 INFO : Inserting APOD
03 Jan 2018 15:17:00,440 INFO : Inserting APOE
03 Jan 2018 15:17:00,824 INFO : Inserting APOF
03 Jan 2018 15:17:01,222 INFO : Inserting APOH
03 Jan 2018 15:17:01,580 INFO : Inserting APOL1
03 Jan 2018 15:17:01,914 INFO : Inserting APOM
03 Jan 2018 15:17:02,263 INFO : Inserting C3
03 Jan 2018 15:17:02,597 INFO : Inserting C4A
03 Jan 2018 15:17:02,937 INFO : Inserting CETP
03 Jan 2018 15:17:03,272 INFO : Inserting CLU
03 Jan 2018 15:17:03,617 INFO : Inserting HBB
03 Jan 2018 15:17:03,955 INFO : Inserting HPR
03 Jan 2018 15:17:04,301 INFO : Inserting LCAT
03 Jan 2018 15:17:04,637 INFO : Inserting LPA
03 Jan 2018 15:17:04,970 INFO : Inserting LpPLA2
03 Jan 2018 15:17:05,360 INFO : Inserting PCYOX1
03 Jan 2018 15:17:05,696 INFO : Inserting PLTP
03 Jan 2018 15:17:06,054 INFO : Inserting PON1
03 Jan 2018 15:17:06,438 INFO : Inserting PON3
03 Jan 2018 15:17:06,775 INFO : Inserting RBP4
03 Jan 2018 15:17:07,120 INFO : Inserting SAA1_2
03 Jan 2018 15:17:07,490 INFO : Inserting SAA4
03 Jan 2018 15:17:07,837 INFO : Inserting SERPINA1
03 Jan 2018 15:17:08,169 INFO : Inserting SERPINA4
03 Jan 2018 15:17:08,524 INFO : Inserting VDBP
03 Jan 2018 15:17:08,907 INFO : Inserting VTN
03 Jan 2018 15:17:10,187 INFO : Completed import of Skyline document from HDL_T2D_TexSet2_Panorama_2018-01-03_14-01-51.sky.zip
03 Jan 2018 15:17:10,198 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2018/Vaisar%20-%20HDL_T2D_PlosOne/@files/export/xar/experiments_and_runs.xar.exploded/Run25656/HDL_T2D_TexSet2_Panorama_2018-01-03_14-01-51.sky.zip into the system
03 Jan 2018 15:17:10,204 INFO : Done importing xar
03 Jan 2018 15:17:10,210 INFO : Loading wikis
03 Jan 2018 15:17:10,214 INFO : 0 wikis imported
03 Jan 2018 15:17:10,214 INFO : Done importing wikis
03 Jan 2018 15:17:10,220 INFO : Loading pages and webpart properties
03 Jan 2018 15:17:10,270 INFO : Done importing pages and webpart properties
03 Jan 2018 15:17:10,271 INFO :
03 Jan 2018 15:17:10,271 INFO : Experiment import completed successfully.
03 Jan 2018 15:17:10,271 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentImportTask'
03 Jan 2018 15:17:10,286 INFO : Starting to run task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask' at location 'webserver'
03 Jan 2018 15:17:10,286 INFO :
03 Jan 2018 15:17:10,286 INFO : Finishing up experiment copy.
03 Jan 2018 15:17:10,289 INFO : Creating a new TargetedMS experiment entry in targetedms.ExperimentAnnotations.
03 Jan 2018 15:17:10,298 INFO : Updating access URL to point to the new copy of the data.
03 Jan 2018 15:17:10,336 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask'