20 Dec 2018 10:37:31,205 INFO : Copying experiment "Search for synaptic biomarkers of Alzheimer’s disease" from folder /UPF - CRG/Sant Pau_AD synaptic to /Panorama Public/2018/UPF CRG - Sant Pau_AD synaptic
20 Dec 2018 10:37:31,205 INFO : =======================================
20 Dec 2018 10:37:31,418 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentExportTask' at location 'webserver'
20 Dec 2018 10:37:31,418 INFO :
20 Dec 2018 10:37:31,418 INFO : Exporting experiment.
20 Dec 2018 10:38:09,172 INFO :
20 Dec 2018 10:38:09,172 INFO : Experiment export completed successfully.
20 Dec 2018 10:38:09,172 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentExportTask'
20 Dec 2018 10:38:09,220 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentImportTask' at location 'webserver'
20 Dec 2018 10:38:09,220 INFO :
20 Dec 2018 10:38:09,220 INFO : Importing experiment.
20 Dec 2018 10:38:09,436 INFO : Loading folder properties (folder type, settings and active modules)
20 Dec 2018 10:38:09,566 INFO : Done importing folder properties (folder type, settings and active modules)
20 Dec 2018 10:38:09,572 INFO : Loading container specific module properties
20 Dec 2018 10:38:09,598 INFO : Done importing container specific module properties
20 Dec 2018 10:38:09,648 INFO : Loading xar
20 Dec 2018 10:38:12,661 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-4820:TargetedMS.ImportSkyZip'
20 Dec 2018 10:38:12,664 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-4820:TargetedMS.ImportSkyZip.Core'
20 Dec 2018 10:38:12,668 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-4820:TargetedMS.ImportSkyZip.Output'
20 Dec 2018 10:38:12,668 DEBUG: Protocol import complete
20 Dec 2018 10:38:12,670 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-4820:Search+for+synaptic+biomarkers+of+Alzheimer%E2%80%99s+disease'
20 Dec 2018 10:38:12,670 DEBUG: Experiment/Run group import complete
20 Dec 2018 10:38:12,708 DEBUG: Protocol action set import complete
20 Dec 2018 10:38:12,728 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4820:TargetedMS.ImportSkyZip'
20 Dec 2018 10:38:12,900 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-4820:ecaea43a-e668-1036-a680-3013bb9bd98b'
20 Dec 2018 10:38:12,906 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-4820:ecaea420-e668-1036-a680-3013bb9bd98b'
20 Dec 2018 10:38:12,906 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4820:TargetedMS.ImportSkyZip.Core'
20 Dec 2018 10:38:12,911 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4820:TargetedMS.ImportSkyZip.Output'
20 Dec 2018 10:38:12,911 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-4820:ecaea5cc-e668-1036-a680-3013bb9bd98b'
20 Dec 2018 10:38:12,920 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4820:TargetedMS.ImportSkyZip'
20 Dec 2018 10:38:12,929 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-4820:ecaebf1c-e668-1036-a680-3013bb9bd98b'
20 Dec 2018 10:38:12,935 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-4820:ecaebf03-e668-1036-a680-3013bb9bd98b'
20 Dec 2018 10:38:12,935 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4820:TargetedMS.ImportSkyZip.Core'
20 Dec 2018 10:38:12,938 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4820:TargetedMS.ImportSkyZip.Output'
20 Dec 2018 10:38:12,938 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-4820:ecaec34c-e668-1036-a680-3013bb9bd98b'
20 Dec 2018 10:38:12,950 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4820:TargetedMS.ImportSkyZip'
20 Dec 2018 10:38:12,966 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-4820:ecaec461-e668-1036-a680-3013bb9bd98b'
20 Dec 2018 10:38:12,979 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-4820:ecaec279-e668-1036-a680-3013bb9bd98b'
20 Dec 2018 10:38:12,980 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4820:TargetedMS.ImportSkyZip.Core'
20 Dec 2018 10:38:12,986 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4820:TargetedMS.ImportSkyZip.Output'
20 Dec 2018 10:38:12,988 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-4820:ecaec5a6-e668-1036-a680-3013bb9bd98b'
20 Dec 2018 10:38:13,004 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4820:TargetedMS.ImportSkyZip'
20 Dec 2018 10:38:13,021 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-4820:ecaead97-e668-1036-a680-3013bb9bd98b'
20 Dec 2018 10:38:13,035 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-4820:ecaead85-e668-1036-a680-3013bb9bd98b'
20 Dec 2018 10:38:13,035 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4820:TargetedMS.ImportSkyZip.Core'
20 Dec 2018 10:38:13,043 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4820:TargetedMS.ImportSkyZip.Output'
20 Dec 2018 10:38:13,044 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-4820:ecaeadea-e668-1036-a680-3013bb9bd98b'
20 Dec 2018 10:38:13,046 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2018/UPF%20CRG%20-%20Sant%20Pau_AD%20synaptic/@files/export/xar/experiments_and_runs.xar.exploded/Run44594/170208_OBAL_Samples_refined_2018-12-20_10-37-30/170208_OBAL_Samples_refined.skyd into the system
20 Dec 2018 10:38:13,048 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2018/UPF%20CRG%20-%20Sant%20Pau_AD%20synaptic/@files/export/xar/experiments_and_runs.xar.exploded/Run44594/170208_OBAL_Samples_refined_2018-12-20_10-37-30/170208_OBAL_Samples_refined.skyd into the system
20 Dec 2018 10:38:13,049 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2018/UPF%20CRG%20-%20Sant%20Pau_AD%20synaptic/@files/export/xar/experiments_and_runs.xar.exploded/Run44594/170208_OBAL_Samples_refined_2018-12-20_10-37-30.sky.zip into the system
20 Dec 2018 10:38:13,065 INFO : Starting import from 170208_OBAL_Samples_refined_2018-12-20_10-37-30.sky.zip
20 Dec 2018 10:38:13,081 INFO : Starting to import Skyline document from 170208_OBAL_Samples_refined_2018-12-20_10-37-30.sky.zip
20 Dec 2018 10:38:13,099 INFO : Expanding 170208_OBAL_Samples_refined.skyd
20 Dec 2018 10:38:13,713 INFO : Expanding 170208_OBAL_Samples_refined.sky.view
20 Dec 2018 10:38:13,714 INFO : Expanding 170208_OBAL_Samples_refined.sky
20 Dec 2018 10:38:13,788 WARN : The version of this Skyline document is 4.2. This is newer than the highest supported version 4.1
20 Dec 2018 10:38:14,258 INFO : Inserting Q9P2S2
20 Dec 2018 10:38:18,466 INFO : Inserting Q9Y4C0
20 Dec 2018 10:38:23,113 INFO : Inserting P04216
20 Dec 2018 10:38:29,574 INFO : Inserting Q92752
20 Dec 2018 10:38:33,252 INFO : Inserting Q8NFZ4
20 Dec 2018 10:38:38,603 INFO : Inserting P48058
20 Dec 2018 10:38:42,922 INFO : Inserting P61266
20 Dec 2018 10:38:44,973 INFO : Inserting P42262
20 Dec 2018 10:38:47,003 INFO : Inserting P63027
20 Dec 2018 10:38:48,834 INFO : Inserting Q9P2S2
20 Dec 2018 10:38:51,031 INFO : Inserting Q9Y4C0
20 Dec 2018 10:38:53,453 INFO : Inserting P48058
20 Dec 2018 10:38:55,594 INFO : Inserting O94985
20 Dec 2018 10:38:58,914 INFO : Inserting O94985
20 Dec 2018 10:39:01,349 INFO : Inserting O94985
20 Dec 2018 10:39:07,262 INFO : Completed import of Skyline document from 170208_OBAL_Samples_refined_2018-12-20_10-37-30.sky.zip
20 Dec 2018 10:39:07,267 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2018/UPF%20CRG%20-%20Sant%20Pau_AD%20synaptic/@files/export/xar/experiments_and_runs.xar.exploded/Run44594/170208_OBAL_Samples_refined_2018-12-20_10-37-30.sky.zip into the system
20 Dec 2018 10:39:07,267 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2018/UPF%20CRG%20-%20Sant%20Pau_AD%20synaptic/@files/export/xar/experiments_and_runs.xar.exploded/Run44599/160616_OBAL_95_samples_quant_2018-12-20_10-50-06/160616_OBAL_95_samples_quant.skyd into the system
20 Dec 2018 10:39:07,268 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2018/UPF%20CRG%20-%20Sant%20Pau_AD%20synaptic/@files/export/xar/experiments_and_runs.xar.exploded/Run44599/160616_OBAL_95_samples_quant_2018-12-20_10-50-06/160616_OBAL_95_samples_quant.skyd into the system
20 Dec 2018 10:39:07,268 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2018/UPF%20CRG%20-%20Sant%20Pau_AD%20synaptic/@files/export/xar/experiments_and_runs.xar.exploded/Run44599/160616_OBAL_95_samples_quant_2018-12-20_10-50-06.sky.zip into the system
20 Dec 2018 10:39:07,270 INFO : Starting import from 160616_OBAL_95_samples_quant_2018-12-20_10-50-06.sky.zip
20 Dec 2018 10:39:07,272 INFO : Starting to import Skyline document from 160616_OBAL_95_samples_quant_2018-12-20_10-50-06.sky.zip
20 Dec 2018 10:39:07,288 INFO : Expanding 160616_OBAL_95_samples_quant.skyd
20 Dec 2018 10:39:08,053 INFO : Expanding 160616_OBAL_95_samples_quant.sky.view
20 Dec 2018 10:39:08,053 INFO : Expanding 160616_OBAL_95_samples_quant.sky
20 Dec 2018 10:39:08,086 WARN : The version of this Skyline document is 4.2. This is newer than the highest supported version 4.1
20 Dec 2018 10:39:08,954 INFO : Inserting Q9P2S2
20 Dec 2018 10:39:12,427 INFO : Inserting Q9Y4C0
20 Dec 2018 10:39:16,854 INFO : Inserting P04216
20 Dec 2018 10:39:23,095 INFO : Inserting Q92752
20 Dec 2018 10:39:26,786 INFO : Inserting Q8NFZ4
20 Dec 2018 10:39:31,267 INFO : Inserting P48058
20 Dec 2018 10:39:35,423 INFO : Inserting P61266
20 Dec 2018 10:39:37,516 INFO : Inserting P42262
20 Dec 2018 10:39:39,269 INFO : Inserting P63027
20 Dec 2018 10:39:40,952 INFO : Inserting Q9P2S2
20 Dec 2018 10:39:42,745 INFO : Inserting Q9Y4C0
20 Dec 2018 10:39:44,895 INFO : Inserting P48058
20 Dec 2018 10:39:46,960 INFO : Inserting O94985
20 Dec 2018 10:39:48,835 INFO : Inserting O94985
20 Dec 2018 10:39:50,946 INFO : Inserting O94985
20 Dec 2018 10:39:57,040 INFO : Completed import of Skyline document from 160616_OBAL_95_samples_quant_2018-12-20_10-50-06.sky.zip
20 Dec 2018 10:39:57,048 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2018/UPF%20CRG%20-%20Sant%20Pau_AD%20synaptic/@files/export/xar/experiments_and_runs.xar.exploded/Run44599/160616_OBAL_95_samples_quant_2018-12-20_10-50-06.sky.zip into the system
20 Dec 2018 10:39:57,048 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2018/UPF%20CRG%20-%20Sant%20Pau_AD%20synaptic/@files/export/xar/experiments_and_runs.xar.exploded/Run44601/160616_OBAL_95_samples_quant_high_quality_2018-12-20_10-50-47/160616_OBAL_95_samples_quant_high_quality.skyd into the system
20 Dec 2018 10:39:57,048 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2018/UPF%20CRG%20-%20Sant%20Pau_AD%20synaptic/@files/export/xar/experiments_and_runs.xar.exploded/Run44601/160616_OBAL_95_samples_quant_high_quality_2018-12-20_10-50-47/160616_OBAL_95_samples_quant_high_quality.skyd into the system
20 Dec 2018 10:39:57,049 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2018/UPF%20CRG%20-%20Sant%20Pau_AD%20synaptic/@files/export/xar/experiments_and_runs.xar.exploded/Run44601/160616_OBAL_95_samples_quant_high_quality_2018-12-20_10-50-47.sky.zip into the system
20 Dec 2018 10:39:57,050 INFO : Starting import from 160616_OBAL_95_samples_quant_high_quality_2018-12-20_10-50-47.sky.zip
20 Dec 2018 10:39:57,053 INFO : Starting to import Skyline document from 160616_OBAL_95_samples_quant_high_quality_2018-12-20_10-50-47.sky.zip
20 Dec 2018 10:39:57,068 INFO : Expanding 160616_OBAL_95_samples_quant_high_quality.skyd
20 Dec 2018 10:39:57,553 INFO : Expanding 160616_OBAL_95_samples_quant_high_quality.sky.view
20 Dec 2018 10:39:57,553 INFO : Expanding 160616_OBAL_95_samples_quant_high_quality.sky
20 Dec 2018 10:39:57,580 WARN : The version of this Skyline document is 4.2. This is newer than the highest supported version 4.1
20 Dec 2018 10:39:58,165 INFO : Inserting Q9P2S2
20 Dec 2018 10:40:01,324 INFO : Inserting Q9Y4C0
20 Dec 2018 10:40:05,910 INFO : Inserting P04216
20 Dec 2018 10:40:12,421 INFO : Inserting Q92752
20 Dec 2018 10:40:14,967 INFO : Inserting Q8NFZ4
20 Dec 2018 10:40:16,798 INFO : Inserting P48058
20 Dec 2018 10:40:19,070 INFO : Inserting P42262
20 Dec 2018 10:40:20,687 INFO : Inserting Q9P2S2
20 Dec 2018 10:40:22,571 INFO : Inserting Q9Y4C0
20 Dec 2018 10:40:24,792 INFO : Inserting P48058
20 Dec 2018 10:40:26,851 INFO : Inserting O94985
20 Dec 2018 10:40:28,664 INFO : Inserting O94985
20 Dec 2018 10:40:30,908 INFO : Inserting O94985
20 Dec 2018 10:40:36,536 INFO : Completed import of Skyline document from 160616_OBAL_95_samples_quant_high_quality_2018-12-20_10-50-47.sky.zip
20 Dec 2018 10:40:36,540 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2018/UPF%20CRG%20-%20Sant%20Pau_AD%20synaptic/@files/export/xar/experiments_and_runs.xar.exploded/Run44601/160616_OBAL_95_samples_quant_high_quality_2018-12-20_10-50-47.sky.zip into the system
20 Dec 2018 10:40:36,540 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2018/UPF%20CRG%20-%20Sant%20Pau_AD%20synaptic/@files/export/xar/experiments_and_runs.xar.exploded/Run44596/180913_OBAL_picked-rep1_2018-12-20_10-43-34/180913_OBAL_picked-rep1.skyd into the system
20 Dec 2018 10:40:36,541 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2018/UPF%20CRG%20-%20Sant%20Pau_AD%20synaptic/@files/export/xar/experiments_and_runs.xar.exploded/Run44596/180913_OBAL_picked-rep1_2018-12-20_10-43-34/180913_OBAL_picked-rep1.skyd into the system
20 Dec 2018 10:40:36,541 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2018/UPF%20CRG%20-%20Sant%20Pau_AD%20synaptic/@files/export/xar/experiments_and_runs.xar.exploded/Run44596/180913_OBAL_picked-rep1_2018-12-20_10-43-34.sky.zip into the system
20 Dec 2018 10:40:36,544 INFO : Starting import from 180913_OBAL_picked-rep1_2018-12-20_10-43-34.sky.zip
20 Dec 2018 10:40:36,547 INFO : Starting to import Skyline document from 180913_OBAL_picked-rep1_2018-12-20_10-43-34.sky.zip
20 Dec 2018 10:40:36,551 INFO : Expanding 180913_OBAL_picked-rep1.skyd
20 Dec 2018 10:40:36,640 INFO : Expanding 180913_OBAL_picked-rep1.sky.view
20 Dec 2018 10:40:36,641 INFO : Expanding 180913_OBAL_picked-rep1.sky
20 Dec 2018 10:40:36,654 WARN : The version of this Skyline document is 4.2. This is newer than the highest supported version 4.1
20 Dec 2018 10:40:36,807 INFO : Inserting Q9P2S2
20 Dec 2018 10:40:38,835 INFO : Inserting Q9Y4C0
20 Dec 2018 10:40:40,506 INFO : Inserting P04216
20 Dec 2018 10:40:42,196 INFO : Inserting Q92752
20 Dec 2018 10:40:43,860 INFO : Inserting Q8NFZ4
20 Dec 2018 10:40:45,450 INFO : Inserting P48058
20 Dec 2018 10:40:47,176 INFO : Inserting P61266
20 Dec 2018 10:40:48,096 INFO : Inserting P42262
20 Dec 2018 10:40:48,872 INFO : Inserting P63027
20 Dec 2018 10:40:49,543 INFO : Inserting Q9P2S2
20 Dec 2018 10:40:50,382 INFO : Inserting Q9Y4C0
20 Dec 2018 10:40:51,306 INFO : Inserting P48058
20 Dec 2018 10:40:52,243 INFO : Inserting O94985
20 Dec 2018 10:40:53,032 INFO : Inserting O94985
20 Dec 2018 10:40:53,947 INFO : Inserting O94985
20 Dec 2018 10:40:57,539 INFO : Completed import of Skyline document from 180913_OBAL_picked-rep1_2018-12-20_10-43-34.sky.zip
20 Dec 2018 10:40:57,544 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2018/UPF%20CRG%20-%20Sant%20Pau_AD%20synaptic/@files/export/xar/experiments_and_runs.xar.exploded/Run44596/180913_OBAL_picked-rep1_2018-12-20_10-43-34.sky.zip into the system
20 Dec 2018 10:40:57,617 INFO : Done importing xar
20 Dec 2018 10:40:57,620 INFO : Loading wikis
20 Dec 2018 10:40:57,625 INFO : 0 wikis imported
20 Dec 2018 10:40:57,625 INFO : Done importing wikis
20 Dec 2018 10:41:05,149 INFO : Loading pages and webpart properties
20 Dec 2018 10:41:05,460 INFO : Done importing pages and webpart properties
20 Dec 2018 10:41:05,460 INFO :
20 Dec 2018 10:41:05,461 INFO : Experiment import completed successfully.
20 Dec 2018 10:41:05,461 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentImportTask'
20 Dec 2018 10:41:05,491 INFO : Starting to run task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask' at location 'webserver'
20 Dec 2018 10:41:05,492 INFO :
20 Dec 2018 10:41:05,492 INFO : Finishing up experiment copy.
20 Dec 2018 10:41:05,495 INFO : Creating a new TargetedMS experiment entry in targetedms.ExperimentAnnotations.
20 Dec 2018 10:41:05,505 INFO : Updating access URL to point to the new copy of the data.
20 Dec 2018 10:41:06,974 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask'