02 Feb 2018 13:49:01,292 INFO : Copying experiment "Targeted mass spectrometry enables robust quantification of FANCD2 mono-ubiquitination in response to DNA damage" from folder /Paulovich/Published_datasets/FANCD2_immunoMRMassay to /Panorama Public/2018/Paulovich - FANCD2_immunoMRMassay
02 Feb 2018 13:49:01,292 INFO : =======================================
02 Feb 2018 13:49:01,395 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentExportTask' at location 'webserver'
02 Feb 2018 13:49:01,400 INFO :
02 Feb 2018 13:49:01,400 INFO : Exporting experiment.
02 Feb 2018 13:49:02,533 INFO :
02 Feb 2018 13:49:02,533 INFO : Experiment export completed successfully.
02 Feb 2018 13:49:02,533 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentExportTask'
02 Feb 2018 13:49:02,611 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentImportTask' at location 'webserver'
02 Feb 2018 13:49:02,611 INFO :
02 Feb 2018 13:49:02,611 INFO : Importing experiment.
02 Feb 2018 13:49:02,618 INFO : Loading folder properties (folder type, settings and active modules)
02 Feb 2018 13:49:02,689 INFO : Done importing folder properties (folder type, settings and active modules)
02 Feb 2018 13:49:02,695 INFO : Loading container specific module properties
02 Feb 2018 13:49:02,706 INFO : Done importing container specific module properties
02 Feb 2018 13:49:02,712 INFO : Loading queries
02 Feb 2018 13:49:02,845 INFO : 6 queries imported
02 Feb 2018 13:49:02,845 INFO : Done importing queries
02 Feb 2018 13:49:02,853 INFO : Loading xar
02 Feb 2018 13:49:02,922 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-3824:TargetedMS.ImportSkyZip'
02 Feb 2018 13:49:02,930 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-3824:TargetedMS.ImportSkyZip.Core'
02 Feb 2018 13:49:02,937 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-3824:TargetedMS.ImportSkyZip.Output'
02 Feb 2018 13:49:02,937 DEBUG: Protocol import complete
02 Feb 2018 13:49:02,940 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-3824:Targeted+mass+spectrometry+enables+robust+quantification+of+FANCD2+mono-ubiquitination+in+response+to+DNA+damage'
02 Feb 2018 13:49:02,940 DEBUG: Experiment/Run group import complete
02 Feb 2018 13:49:02,972 DEBUG: Protocol action set import complete
02 Feb 2018 13:49:03,002 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3824:TargetedMS.ImportSkyZip'
02 Feb 2018 13:49:03,179 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-3824:4908e0f4-ea6c-1035-b49b-3013bb9b082f'
02 Feb 2018 13:49:03,180 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3824:TargetedMS.ImportSkyZip.Core'
02 Feb 2018 13:49:03,187 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3824:TargetedMS.ImportSkyZip.Output'
02 Feb 2018 13:49:03,189 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-3824:4908e116-ea6c-1035-b49b-3013bb9b082f'
02 Feb 2018 13:49:03,206 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3824:TargetedMS.ImportSkyZip'
02 Feb 2018 13:49:03,224 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-3824:4908e193-ea6c-1035-b49b-3013bb9b082f'
02 Feb 2018 13:49:03,224 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3824:TargetedMS.ImportSkyZip.Core'
02 Feb 2018 13:49:03,229 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3824:TargetedMS.ImportSkyZip.Output'
02 Feb 2018 13:49:03,231 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-3824:4908e1b9-ea6c-1035-b49b-3013bb9b082f'
02 Feb 2018 13:49:03,248 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3824:TargetedMS.ImportSkyZip'
02 Feb 2018 13:49:03,266 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-3824:4908df74-ea6c-1035-b49b-3013bb9b082f'
02 Feb 2018 13:49:03,266 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3824:TargetedMS.ImportSkyZip.Core'
02 Feb 2018 13:49:03,271 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3824:TargetedMS.ImportSkyZip.Output'
02 Feb 2018 13:49:03,272 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-3824:4908dfb0-ea6c-1035-b49b-3013bb9b082f'
02 Feb 2018 13:49:03,287 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3824:TargetedMS.ImportSkyZip'
02 Feb 2018 13:49:03,301 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-3824:4908dff4-ea6c-1035-b49b-3013bb9b082f'
02 Feb 2018 13:49:03,301 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3824:TargetedMS.ImportSkyZip.Core'
02 Feb 2018 13:49:03,306 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3824:TargetedMS.ImportSkyZip.Output'
02 Feb 2018 13:49:03,307 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-3824:4908e027-ea6c-1035-b49b-3013bb9b082f'
02 Feb 2018 13:49:03,322 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3824:TargetedMS.ImportSkyZip'
02 Feb 2018 13:49:03,336 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-3824:4908e06b-ea6c-1035-b49b-3013bb9b082f'
02 Feb 2018 13:49:03,337 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3824:TargetedMS.ImportSkyZip.Core'
02 Feb 2018 13:49:03,341 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3824:TargetedMS.ImportSkyZip.Output'
02 Feb 2018 13:49:03,342 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-3824:4908e089-ea6c-1035-b49b-3013bb9b082f'
02 Feb 2018 13:49:03,344 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2018/Paulovich%20-%20FANCD2_immunoMRMassay/@files/export/xar/experiments_and_runs.xar.exploded/Run27240/FANCD2_repeatabilityEndo_LCLlysate_2018-02-02_09-38-40.sky.zip into the system
02 Feb 2018 13:49:03,349 INFO : Starting import from FANCD2_repeatabilityEndo_LCLlysate_2018-02-02_09-38-40.sky.zip
02 Feb 2018 13:49:03,362 INFO : Starting to import Skyline document from FANCD2_repeatabilityEndo_LCLlysate_2018-02-02_09-38-40.sky.zip
02 Feb 2018 13:49:03,362 INFO : Expanding FANCD2_repeatabilityEndo_LCLlysate.skyd
02 Feb 2018 13:49:03,366 INFO : Expanding FANCD2_repeatabilityEndo_LCLlysate.sky.view
02 Feb 2018 13:49:03,366 INFO : Expanding FANCD2_repeatabilityEndo_LCLlysate.sky
02 Feb 2018 13:49:03,560 INFO : Inserting sp|Q9BXW9|FACD2_HUMAN
02 Feb 2018 13:49:06,279 INFO : Completed import of Skyline document from FANCD2_repeatabilityEndo_LCLlysate_2018-02-02_09-38-40.sky.zip
02 Feb 2018 13:49:06,285 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2018/Paulovich%20-%20FANCD2_immunoMRMassay/@files/export/xar/experiments_and_runs.xar.exploded/Run27240/FANCD2_repeatabilityEndo_LCLlysate_2018-02-02_09-38-40.sky.zip into the system
02 Feb 2018 13:49:06,285 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2018/Paulovich%20-%20FANCD2_immunoMRMassay/@files/export/xar/experiments_and_runs.xar.exploded/Run27241/FANCD2_repeatabilityLMH_LCLlysate_2018-02-02_09-39-33.sky.zip into the system
02 Feb 2018 13:49:06,287 INFO : Starting import from FANCD2_repeatabilityLMH_LCLlysate_2018-02-02_09-39-33.sky.zip
02 Feb 2018 13:49:06,293 INFO : Starting to import Skyline document from FANCD2_repeatabilityLMH_LCLlysate_2018-02-02_09-39-33.sky.zip
02 Feb 2018 13:49:06,293 INFO : Expanding FANCD2_repeatabilityLMH_LCLlysate.skyd
02 Feb 2018 13:49:06,296 INFO : Expanding FANCD2_repeatabilityLMH_LCLlysate.sky.view
02 Feb 2018 13:49:06,296 INFO : Expanding FANCD2_repeatabilityLMH_LCLlysate.sky
02 Feb 2018 13:49:06,498 INFO : Inserting sp|Q9BXW9|FACD2_HUMAN
02 Feb 2018 13:49:09,453 INFO : Completed import of Skyline document from FANCD2_repeatabilityLMH_LCLlysate_2018-02-02_09-39-33.sky.zip
02 Feb 2018 13:49:09,462 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2018/Paulovich%20-%20FANCD2_immunoMRMassay/@files/export/xar/experiments_and_runs.xar.exploded/Run27241/FANCD2_repeatabilityLMH_LCLlysate_2018-02-02_09-39-33.sky.zip into the system
02 Feb 2018 13:49:09,463 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2018/Paulovich%20-%20FANCD2_immunoMRMassay/@files/export/xar/experiments_and_runs.xar.exploded/Run27237/FANCD2_demonstration_2018-02-02_09-37-00.sky.zip into the system
02 Feb 2018 13:49:09,467 INFO : Starting import from FANCD2_demonstration_2018-02-02_09-37-00.sky.zip
02 Feb 2018 13:49:09,474 INFO : Starting to import Skyline document from FANCD2_demonstration_2018-02-02_09-37-00.sky.zip
02 Feb 2018 13:49:09,474 INFO : Expanding FANCD2_demonstration.skyd
02 Feb 2018 13:49:09,527 INFO : Expanding FANCD2_demonstration.sky.view
02 Feb 2018 13:49:09,528 INFO : Expanding FANCD2_demonstration.sky
02 Feb 2018 13:49:09,902 INFO : Inserting sp|Q9BXW9|FACD2_HUMAN
02 Feb 2018 13:49:12,393 INFO : Completed import of Skyline document from FANCD2_demonstration_2018-02-02_09-37-00.sky.zip
02 Feb 2018 13:49:12,402 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2018/Paulovich%20-%20FANCD2_immunoMRMassay/@files/export/xar/experiments_and_runs.xar.exploded/Run27237/FANCD2_demonstration_2018-02-02_09-37-00.sky.zip into the system
02 Feb 2018 13:49:12,403 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2018/Paulovich%20-%20FANCD2_immunoMRMassay/@files/export/xar/experiments_and_runs.xar.exploded/Run27238/FANCD2_curves_LCLlysate_2018-02-02_09-37-53.sky.zip into the system
02 Feb 2018 13:49:12,407 INFO : Starting import from FANCD2_curves_LCLlysate_2018-02-02_09-37-53.sky.zip
02 Feb 2018 13:49:12,414 INFO : Starting to import Skyline document from FANCD2_curves_LCLlysate_2018-02-02_09-37-53.sky.zip
02 Feb 2018 13:49:12,414 INFO : Expanding FANCD2_curves_LCLlysate.skyd
02 Feb 2018 13:49:12,418 INFO : Expanding FANCD2_curves_LCLlysate.sky.view
02 Feb 2018 13:49:12,419 INFO : Expanding FANCD2_curves_LCLlysate.sky
02 Feb 2018 13:49:12,874 INFO : Inserting sp|Q9BXW9|FACD2_HUMAN
02 Feb 2018 13:49:15,222 INFO : Completed import of Skyline document from FANCD2_curves_LCLlysate_2018-02-02_09-37-53.sky.zip
02 Feb 2018 13:49:15,231 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2018/Paulovich%20-%20FANCD2_immunoMRMassay/@files/export/xar/experiments_and_runs.xar.exploded/Run27238/FANCD2_curves_LCLlysate_2018-02-02_09-37-53.sky.zip into the system
02 Feb 2018 13:49:15,231 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2018/Paulovich%20-%20FANCD2_immunoMRMassay/@files/export/xar/experiments_and_runs.xar.exploded/Run27239/FANCD2_stability_2018-02-02_09-38-04.sky.zip into the system
02 Feb 2018 13:49:15,236 INFO : Starting import from FANCD2_stability_2018-02-02_09-38-04.sky.zip
02 Feb 2018 13:49:15,242 INFO : Starting to import Skyline document from FANCD2_stability_2018-02-02_09-38-04.sky.zip
02 Feb 2018 13:49:15,243 INFO : Expanding FANCD2_stability.skyd
02 Feb 2018 13:49:15,245 INFO : Expanding FANCD2_stability.sky.view
02 Feb 2018 13:49:15,245 INFO : Expanding FANCD2_stability.sky
02 Feb 2018 13:49:15,448 INFO : Inserting sp|Q9BXW9|FACD2_HUMAN
02 Feb 2018 13:49:16,918 INFO : Completed import of Skyline document from FANCD2_stability_2018-02-02_09-38-04.sky.zip
02 Feb 2018 13:49:16,927 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2018/Paulovich%20-%20FANCD2_immunoMRMassay/@files/export/xar/experiments_and_runs.xar.exploded/Run27239/FANCD2_stability_2018-02-02_09-38-04.sky.zip into the system
02 Feb 2018 13:49:16,933 INFO : Done importing xar
02 Feb 2018 13:49:16,940 INFO : Loading wikis
02 Feb 2018 13:49:16,951 INFO : 0 wikis imported
02 Feb 2018 13:49:16,951 INFO : Done importing wikis
02 Feb 2018 13:49:16,956 INFO : Loading pages and webpart properties
02 Feb 2018 13:49:17,017 INFO : Done importing pages and webpart properties
02 Feb 2018 13:49:17,017 INFO :
02 Feb 2018 13:49:17,017 INFO : Experiment import completed successfully.
02 Feb 2018 13:49:17,017 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentImportTask'
02 Feb 2018 13:49:17,033 INFO : Starting to run task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask' at location 'webserver'
02 Feb 2018 13:49:17,033 INFO :
02 Feb 2018 13:49:17,033 INFO : Finishing up experiment copy.
02 Feb 2018 13:49:17,035 INFO : Creating a new TargetedMS experiment entry in targetedms.ExperimentAnnotations.
02 Feb 2018 13:49:17,043 INFO : Updating access URL to point to the new copy of the data.
02 Feb 2018 13:49:17,083 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask'