27 Mar 2018 11:44:22,695 INFO : Copying experiment "Targeted proteomics to map  prognostic signature proteins in oral cancer" from folder /LNBio - Mas Lab/PaesLeme-SRM Saliva OSCC to /Panorama Public/2018/PaesLeme - SRM Saliva

27 Mar 2018 11:44:22,695 INFO : =======================================

27 Mar 2018 11:44:22,787 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentExportTask' at location 'webserver'

27 Mar 2018 11:44:22,789 INFO : 

27 Mar 2018 11:44:22,789 INFO : Exporting experiment.

27 Mar 2018 11:44:28,099 INFO : 

27 Mar 2018 11:44:28,099 INFO : Experiment export completed successfully.

27 Mar 2018 11:44:28,099 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentExportTask'

27 Mar 2018 11:44:28,116 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentImportTask' at location 'webserver'

27 Mar 2018 11:44:28,116 INFO : 

27 Mar 2018 11:44:28,117 INFO : Importing experiment.

27 Mar 2018 11:44:28,123 INFO : Loading folder properties (folder type, settings and active modules)

27 Mar 2018 11:44:28,236 INFO : Done importing folder properties (folder type, settings and active modules)

27 Mar 2018 11:44:28,241 INFO : Loading container specific module properties

27 Mar 2018 11:44:28,251 INFO : Done importing container specific module properties

27 Mar 2018 11:44:28,256 INFO : Loading xar

27 Mar 2018 11:44:29,359 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-3930:TargetedMS.ImportSkyZip'

27 Mar 2018 11:44:29,362 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-3930:TargetedMS.ImportSkyZip.Core'

27 Mar 2018 11:44:29,365 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-3930:TargetedMS.ImportSkyZip.Output'

27 Mar 2018 11:44:29,365 DEBUG: Protocol import complete

27 Mar 2018 11:44:29,382 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-3930:Targeted+proteomics+to+map++prognostic+signature+proteins+in+oral+cancer'

27 Mar 2018 11:44:29,382 DEBUG: Experiment/Run group import complete

27 Mar 2018 11:44:29,394 DEBUG: Protocol action set import complete

27 Mar 2018 11:44:29,409 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3930:TargetedMS.ImportSkyZip'

27 Mar 2018 11:44:29,501 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-3930:7343773c-1341-1036-9ea8-3013bb9bc843'

27 Mar 2018 11:44:29,501 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3930:TargetedMS.ImportSkyZip.Core'

27 Mar 2018 11:44:29,504 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3930:TargetedMS.ImportSkyZip.Output'

27 Mar 2018 11:44:29,504 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-3930:734377a2-1341-1036-9ea8-3013bb9bc843'

27 Mar 2018 11:44:29,511 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3930:TargetedMS.ImportSkyZip'

27 Mar 2018 11:44:29,517 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-3930:9363e37c-1354-1036-9ea8-3013bb9bc843'

27 Mar 2018 11:44:29,517 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3930:TargetedMS.ImportSkyZip.Core'

27 Mar 2018 11:44:29,519 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3930:TargetedMS.ImportSkyZip.Output'

27 Mar 2018 11:44:29,519 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-3930:9363e414-1354-1036-9ea8-3013bb9bc843'

27 Mar 2018 11:44:29,520 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2018/PaesLeme%20-%20SRM%20Saliva/@files/export/xar/experiments_and_runs.xar.exploded/Run28922/Set1_HL_Carolinas_ncomm_2018-03-26_14-30-21.sky.zip into the system

27 Mar 2018 11:44:29,522 INFO : Starting import from Set1_HL_Carolinas_ncomm_2018-03-26_14-30-21.sky.zip

27 Mar 2018 11:44:29,528 INFO : Starting to import Skyline document from Set1_HL_Carolinas_ncomm_2018-03-26_14-30-21.sky.zip

27 Mar 2018 11:44:29,528 INFO : Expanding Set1_HL_Carolinas_ncomm.skyd

27 Mar 2018 11:44:30,105 INFO : Expanding Set1_HL_Carolinas_ncomm.sky.view

27 Mar 2018 11:44:30,106 INFO : Expanding Set1_HL_Carolinas_ncomm.sky

27 Mar 2018 11:44:31,064 INFO : Inserting sp|P04080|CYTB_HUMAN

27 Mar 2018 11:44:35,876 INFO : Inserting iRT Pierce

27 Mar 2018 11:44:45,629 INFO : Completed import of Skyline document from Set1_HL_Carolinas_ncomm_2018-03-26_14-30-21.sky.zip

27 Mar 2018 11:44:45,633 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2018/PaesLeme%20-%20SRM%20Saliva/@files/export/xar/experiments_and_runs.xar.exploded/Run28922/Set1_HL_Carolinas_ncomm_2018-03-26_14-30-21.sky.zip into the system

27 Mar 2018 11:44:45,633 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2018/PaesLeme%20-%20SRM%20Saliva/@files/export/xar/experiments_and_runs.xar.exploded/Run28926/Set2_HL_Carolinas_sem%20pep%20ACAN_ncomm_2018-03-26_16-12-59.sky.zip into the system

27 Mar 2018 11:44:45,636 INFO : Starting import from Set2_HL_Carolinas_sem pep ACAN_ncomm_2018-03-26_16-12-59.sky.zip

27 Mar 2018 11:44:45,639 INFO : Starting to import Skyline document from Set2_HL_Carolinas_sem pep ACAN_ncomm_2018-03-26_16-12-59.sky.zip

27 Mar 2018 11:44:45,639 INFO : Expanding Set2_HL_Carolinas_sem pep ACAN_ncomm.skyd

27 Mar 2018 11:44:45,940 INFO : Expanding Set2_HL_Carolinas_sem pep ACAN_ncomm.sky.view

27 Mar 2018 11:44:45,941 INFO : Expanding Set2_HL_Carolinas_sem pep ACAN_ncomm.sky

27 Mar 2018 11:44:47,146 INFO : Inserting sp|P00558|PGK1_HUMAN

27 Mar 2018 11:44:50,713 INFO : Inserting sp|Q92597|NDRG1_HUMAN

27 Mar 2018 11:44:54,117 INFO : Inserting sp|P12109|CO6A1_HUMAN

27 Mar 2018 11:44:59,062 INFO : Inserting sp|P06756|ITAV_HUMAN

27 Mar 2018 11:45:04,380 INFO : Inserting sp|P09960|LKHA4_HUMAN

27 Mar 2018 11:45:07,030 INFO : Inserting sp|P02144|MYG_HUMAN

27 Mar 2018 11:45:09,028 INFO : Inserting iRT Pierce

27 Mar 2018 11:45:18,310 INFO : Completed import of Skyline document from Set2_HL_Carolinas_sem pep ACAN_ncomm_2018-03-26_16-12-59.sky.zip

27 Mar 2018 11:45:18,315 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2018/PaesLeme%20-%20SRM%20Saliva/@files/export/xar/experiments_and_runs.xar.exploded/Run28926/Set2_HL_Carolinas_sem%20pep%20ACAN_ncomm_2018-03-26_16-12-59.sky.zip into the system

27 Mar 2018 11:45:18,318 INFO : Done importing xar

27 Mar 2018 11:45:18,322 INFO : Loading wikis

27 Mar 2018 11:45:18,323 INFO : 0 wikis imported

27 Mar 2018 11:45:18,323 INFO : Done importing wikis

27 Mar 2018 11:45:18,326 INFO : Loading pages and webpart properties

27 Mar 2018 11:45:18,348 INFO : Done importing pages and webpart properties

27 Mar 2018 11:45:18,348 INFO : 

27 Mar 2018 11:45:18,348 INFO : Experiment import completed successfully.

27 Mar 2018 11:45:18,348 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentImportTask'

27 Mar 2018 11:45:18,355 INFO : Starting to run task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask' at location 'webserver'

27 Mar 2018 11:45:18,355 INFO : 

27 Mar 2018 11:45:18,355 INFO : Finishing up experiment copy.

27 Mar 2018 11:45:18,357 INFO : Creating a new TargetedMS experiment entry in targetedms.ExperimentAnnotations.

27 Mar 2018 11:45:18,398 INFO : Updating access URL to point to the new copy of the data.

27 Mar 2018 11:45:18,418 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask'