06 Aug 2018 12:48:34,385 INFO : Copying experiment "Incorporation of fluoritnated tryptophan into RV1187" from folder /CSU - Kruh-Garcia Lab/Rv1187 with Fluorinated Tryptophan to /Panorama Public/2018/Kruh-Garcia Lab - Rv1187 with Fluorinated Tryptophan
06 Aug 2018 12:48:34,386 INFO : =======================================
06 Aug 2018 12:48:34,411 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentExportTask' at location 'webserver'
06 Aug 2018 12:48:34,414 INFO :
06 Aug 2018 12:48:34,414 INFO : Exporting experiment.
06 Aug 2018 12:48:34,761 INFO :
06 Aug 2018 12:48:34,761 INFO : Experiment export completed successfully.
06 Aug 2018 12:48:34,761 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentExportTask'
06 Aug 2018 12:48:34,779 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentImportTask' at location 'webserver'
06 Aug 2018 12:48:34,780 INFO :
06 Aug 2018 12:48:34,780 INFO : Importing experiment.
06 Aug 2018 12:48:34,786 INFO : Loading folder properties (folder type, settings and active modules)
06 Aug 2018 12:48:34,892 INFO : Done importing folder properties (folder type, settings and active modules)
06 Aug 2018 12:48:34,896 INFO : Loading container specific module properties
06 Aug 2018 12:48:34,904 INFO : Done importing container specific module properties
06 Aug 2018 12:48:34,910 INFO : Loading xar
06 Aug 2018 12:48:34,936 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-4436:TargetedMS.ImportSkyZip'
06 Aug 2018 12:48:34,943 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-4436:TargetedMS.ImportSkyZip.Core'
06 Aug 2018 12:48:34,949 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-4436:TargetedMS.ImportSkyZip.Output'
06 Aug 2018 12:48:34,950 DEBUG: Protocol import complete
06 Aug 2018 12:48:34,952 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-4436:Monitoring+the+incorporation+of+fluoritnated+tryptophan'
06 Aug 2018 12:48:34,952 DEBUG: Experiment/Run group import complete
06 Aug 2018 12:48:34,984 DEBUG: Protocol action set import complete
06 Aug 2018 12:48:35,008 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4436:TargetedMS.ImportSkyZip'
06 Aug 2018 12:48:35,049 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-4436:5829d50f-7bc0-1036-9916-3013bb9b6ada'
06 Aug 2018 12:48:35,050 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4436:TargetedMS.ImportSkyZip.Core'
06 Aug 2018 12:48:35,057 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4436:TargetedMS.ImportSkyZip.Output'
06 Aug 2018 12:48:35,059 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-4436:5829d537-7bc0-1036-9916-3013bb9b6ada'
06 Aug 2018 12:48:35,061 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2018/Kruh-Garcia%20Lab%20-%20Rv1187%20with%20Fluorinated%20Tryptophan/@files/export/xar/experiments_and_runs.xar.exploded/Run36368/Rv1187_allPeptides_072618_Final_2018-08-06_10-14-43.sky.zip into the system
06 Aug 2018 12:48:35,065 INFO : Starting import from Rv1187_allPeptides_072618_Final_2018-08-06_10-14-43.sky.zip
06 Aug 2018 12:48:35,080 INFO : Starting to import Skyline document from Rv1187_allPeptides_072618_Final_2018-08-06_10-14-43.sky.zip
06 Aug 2018 12:48:35,080 INFO : Expanding Rv1187_allPeptides_072618_Final.skyd
06 Aug 2018 12:48:35,089 INFO : Expanding Rv1187_allPeptides_072618_Final.sky.view
06 Aug 2018 12:48:35,090 INFO : Expanding Rv1187_allPeptides_072618_Final.sky
06 Aug 2018 12:48:35,095 WARN : The version of this Skyline document is 4.12. This is newer than the highest supported version 4.1
06 Aug 2018 12:48:35,268 INFO : Inserting Mycobacterium
06 Aug 2018 12:48:37,411 INFO : Completed import of Skyline document from Rv1187_allPeptides_072618_Final_2018-08-06_10-14-43.sky.zip
06 Aug 2018 12:48:37,419 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2018/Kruh-Garcia%20Lab%20-%20Rv1187%20with%20Fluorinated%20Tryptophan/@files/export/xar/experiments_and_runs.xar.exploded/Run36368/Rv1187_allPeptides_072618_Final_2018-08-06_10-14-43.sky.zip into the system
06 Aug 2018 12:48:37,439 INFO : Done importing xar
06 Aug 2018 12:48:37,443 INFO : Loading wikis
06 Aug 2018 12:48:37,445 INFO : 0 wikis imported
06 Aug 2018 12:48:37,445 INFO : Done importing wikis
06 Aug 2018 12:48:37,455 INFO : Loading pages and webpart properties
06 Aug 2018 12:48:37,504 INFO : Done importing pages and webpart properties
06 Aug 2018 12:48:37,505 INFO :
06 Aug 2018 12:48:37,505 INFO : Experiment import completed successfully.
06 Aug 2018 12:48:37,505 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentImportTask'
06 Aug 2018 12:48:37,515 INFO : Starting to run task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask' at location 'webserver'
06 Aug 2018 12:48:37,515 INFO :
06 Aug 2018 12:48:37,515 INFO : Finishing up experiment copy.
06 Aug 2018 12:48:37,518 INFO : Creating a new TargetedMS experiment entry in targetedms.ExperimentAnnotations.
06 Aug 2018 12:48:37,524 INFO : Updating access URL to point to the new copy of the data.
06 Aug 2018 12:48:37,564 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask'