12 Oct 2018 11:31:22,935 INFO : Copying experiment "Massively parallel fitness profiling reveals multiple novel enzymes in Pseudomonas putida lysine metabolism" from folder /JBEI/Mitch Thompson to /Panorama Public/2018/JBEI - Mitch Thompson

12 Oct 2018 11:31:22,935 INFO : =======================================

12 Oct 2018 11:31:23,028 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentExportTask' at location 'webserver'

12 Oct 2018 11:31:23,031 INFO : 

12 Oct 2018 11:31:23,031 INFO : Exporting experiment.

12 Oct 2018 11:31:26,860 INFO : 

12 Oct 2018 11:31:26,860 INFO : Experiment export completed successfully.

12 Oct 2018 11:31:26,860 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentExportTask'

12 Oct 2018 11:31:26,880 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentImportTask' at location 'webserver'

12 Oct 2018 11:31:26,880 INFO : 

12 Oct 2018 11:31:26,880 INFO : Importing experiment.

12 Oct 2018 11:31:26,883 INFO : Loading folder properties (folder type, settings and active modules)

12 Oct 2018 11:31:27,068 INFO : Done importing folder properties (folder type, settings and active modules)

12 Oct 2018 11:31:27,070 INFO : Loading container specific module properties

12 Oct 2018 11:31:27,074 INFO : Done importing container specific module properties

12 Oct 2018 11:31:27,077 INFO : Loading xar

12 Oct 2018 11:31:27,200 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-4633:TargetedMS.ImportSkyZip'

12 Oct 2018 11:31:27,203 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-4633:TargetedMS.ImportSkyZip.Core'

12 Oct 2018 11:31:27,206 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-4633:TargetedMS.ImportSkyZip.Output'

12 Oct 2018 11:31:27,206 DEBUG: Protocol import complete

12 Oct 2018 11:31:27,225 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-4633:Massively+parallel+fitness+profiling+reveals+multiple+novel+enzymes+in+Pseudomonas+putida+lysine+metabolism'

12 Oct 2018 11:31:27,226 DEBUG: Experiment/Run group import complete

12 Oct 2018 11:31:27,257 DEBUG: Protocol action set import complete

12 Oct 2018 11:31:27,319 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4633:TargetedMS.ImportSkyZip'

12 Oct 2018 11:31:27,321 WARN : Unrecognized CpasType 'urn:lsid:uw.edu:.Folder-4629:' loaded for Data object.

12 Oct 2018 11:31:27,548 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-4633:91d2bf24-afc2-1036-aed4-3013bb9bb7d0'

12 Oct 2018 11:31:27,548 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4633:TargetedMS.ImportSkyZip.Core'

12 Oct 2018 11:31:27,563 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-4633:TargetedMS.ImportSkyZip.Output'

12 Oct 2018 11:31:27,564 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-4633:91d2bfc9-afc2-1036-aed4-3013bb9bb7d0'

12 Oct 2018 11:31:27,565 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2018/JBEI%20-%20Mitch%20Thompson/@files/export/xar/experiments_and_runs.xar.exploded/Run40713/P.%20putida%20for%20Jennifer%20method%20development_trimmed%20with%20more%20Mitch%20proteins-trimmed%20final_2018-10-11_14-03-20.sky.zip into the system

12 Oct 2018 11:31:27,566 INFO : Starting import from P. putida for Jennifer method development_trimmed with more Mitch proteins-trimmed final_2018-10-11_14-03-20.sky.zip

12 Oct 2018 11:31:27,574 INFO : Starting to import Skyline document from P. putida for Jennifer method development_trimmed with more Mitch proteins-trimmed final_2018-10-11_14-03-20.sky.zip

12 Oct 2018 11:31:27,574 INFO : Expanding P. putida for Jennifer method development_trimmed with more Mitch proteins-trimmed final.skyd

12 Oct 2018 11:31:27,594 INFO : Expanding P. putida for Jennifer method development_trimmed with more Mitch proteins-trimmed final.sky.view

12 Oct 2018 11:31:27,595 INFO : Expanding P. putida for Jennifer method development_trimmed with more Mitch proteins-trimmed final.sky

12 Oct 2018 11:31:27,865 INFO : Inserting tr|Q88QV1|Q88QV1_PSEPK

12 Oct 2018 11:31:28,376 INFO : Inserting tr|Q88QV2|Q88QV2_PSEPK

12 Oct 2018 11:31:28,659 INFO : Inserting sp|Q88RB9|DAVT_PSEPK

12 Oct 2018 11:31:29,018 INFO : Inserting sp|Q88RC0|DAVD_PSEPK

12 Oct 2018 11:31:29,414 INFO : Inserting tr|Q88RH1|Q88RH1_PSEPK

12 Oct 2018 11:31:29,817 INFO : Inserting tr|Q88RH2|Q88RH2_PSEPK

12 Oct 2018 11:31:30,097 INFO : Inserting sp|Q88IU0|CSID_PSEPK

12 Oct 2018 11:31:30,407 INFO : Inserting tr|Q88IT9|Q88IT9_PSEPK

12 Oct 2018 11:31:30,721 INFO : Inserting tr|Q88GX7|Q88GX7_PSEPK

12 Oct 2018 11:31:31,155 INFO : Inserting tr|Q88CC4|Q88CC4_PSEPK

12 Oct 2018 11:31:31,704 INFO : Inserting tr|Q88CC3|Q88CC3_PSEPK

12 Oct 2018 11:31:31,998 INFO : Inserting tr|Q88CC1|Q88CC1_PSEPK

12 Oct 2018 11:31:32,658 INFO : Inserting tr|Q88FI7|Q88FI7_PSEPK

12 Oct 2018 11:31:33,066 INFO : Inserting tr|Q88GJ9|Q88GJ9_PSEPK

12 Oct 2018 11:31:33,420 INFO : Inserting tr|Q88EH0|Q88EH0_PSEPK

12 Oct 2018 11:31:36,609 INFO : Completed import of Skyline document from P. putida for Jennifer method development_trimmed with more Mitch proteins-trimmed final_2018-10-11_14-03-20.sky.zip

12 Oct 2018 11:31:36,617 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2018/JBEI%20-%20Mitch%20Thompson/@files/export/xar/experiments_and_runs.xar.exploded/Run40713/P.%20putida%20for%20Jennifer%20method%20development_trimmed%20with%20more%20Mitch%20proteins-trimmed%20final_2018-10-11_14-03-20.sky.zip into the system

12 Oct 2018 11:31:36,741 INFO : Done importing xar

12 Oct 2018 11:31:36,746 INFO : Loading wikis

12 Oct 2018 11:31:36,760 INFO : 0 wikis imported

12 Oct 2018 11:31:36,760 INFO : Done importing wikis

12 Oct 2018 11:31:37,423 INFO : Loading pages and webpart properties

12 Oct 2018 11:31:37,486 INFO : Done importing pages and webpart properties

12 Oct 2018 11:31:37,486 INFO : 

12 Oct 2018 11:31:37,486 INFO : Experiment import completed successfully.

12 Oct 2018 11:31:37,486 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentImportTask'

12 Oct 2018 11:31:37,501 INFO : Starting to run task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask' at location 'webserver'

12 Oct 2018 11:31:37,502 INFO : 

12 Oct 2018 11:31:37,502 INFO : Finishing up experiment copy.

12 Oct 2018 11:31:37,506 INFO : Creating a new TargetedMS experiment entry in targetedms.ExperimentAnnotations.

12 Oct 2018 11:31:37,576 INFO : Updating access URL to point to the new copy of the data.

12 Oct 2018 11:31:37,851 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask'