22 Mar 2018 08:24:32,934 INFO : Copying experiment "Identification of functional TEX101 interactome through proteomic profiling of human spermatozoa homozygous for a missense variant rs35033974" from folder /U of Toronto - Diamandis Lab/Schiza et al. TEX101 polymorphism to /Panorama Public/2018/Diamandis Lab - Schiza et al. TEX101 polymorphism
22 Mar 2018 08:24:32,934 INFO : =======================================
22 Mar 2018 08:24:33,064 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentExportTask' at location 'webserver'
22 Mar 2018 08:24:33,066 INFO :
22 Mar 2018 08:24:33,066 INFO : Exporting experiment.
22 Mar 2018 08:24:34,987 INFO :
22 Mar 2018 08:24:34,987 INFO : Experiment export completed successfully.
22 Mar 2018 08:24:34,987 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentExportTask'
22 Mar 2018 08:24:35,012 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentImportTask' at location 'webserver'
22 Mar 2018 08:24:35,012 INFO :
22 Mar 2018 08:24:35,012 INFO : Importing experiment.
22 Mar 2018 08:24:35,021 INFO : Loading folder properties (folder type, settings and active modules)
22 Mar 2018 08:24:35,155 INFO : Done importing folder properties (folder type, settings and active modules)
22 Mar 2018 08:24:35,160 INFO : Loading container specific module properties
22 Mar 2018 08:24:35,170 INFO : Done importing container specific module properties
22 Mar 2018 08:24:35,179 INFO : Loading xar
22 Mar 2018 08:24:35,349 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-3921:TargetedMS.ImportSkyZip'
22 Mar 2018 08:24:35,358 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-3921:TargetedMS.ImportSkyZip.Core'
22 Mar 2018 08:24:35,368 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-3921:TargetedMS.ImportSkyZip.Output'
22 Mar 2018 08:24:35,368 DEBUG: Protocol import complete
22 Mar 2018 08:24:35,386 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-3921:Identification+of+functional+TEX101+interactome+through+proteomic+profiling+of+human+spermatozoa+homozygous+for+a+missense+variant+rs35033974'
22 Mar 2018 08:24:35,386 DEBUG: Experiment/Run group import complete
22 Mar 2018 08:24:35,541 DEBUG: Protocol action set import complete
22 Mar 2018 08:24:35,641 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3921:TargetedMS.ImportSkyZip'
22 Mar 2018 08:24:35,776 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-3921:50f93ad7-0d49-1036-940b-3013bb9b1c47'
22 Mar 2018 08:24:35,777 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3921:TargetedMS.ImportSkyZip.Core'
22 Mar 2018 08:24:35,785 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3921:TargetedMS.ImportSkyZip.Output'
22 Mar 2018 08:24:35,787 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-3921:50f93af8-0d49-1036-940b-3013bb9b1c47'
22 Mar 2018 08:24:35,805 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3921:TargetedMS.ImportSkyZip'
22 Mar 2018 08:24:35,821 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-3921:b0bd33e1-0d5b-1036-940b-3013bb9b1c47'
22 Mar 2018 08:24:35,822 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3921:TargetedMS.ImportSkyZip.Core'
22 Mar 2018 08:24:35,827 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3921:TargetedMS.ImportSkyZip.Output'
22 Mar 2018 08:24:35,828 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-3921:b0bd3401-0d5b-1036-940b-3013bb9b1c47'
22 Mar 2018 08:24:35,845 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3921:TargetedMS.ImportSkyZip'
22 Mar 2018 08:24:35,861 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-3921:b0bd343f-0d5b-1036-940b-3013bb9b1c47'
22 Mar 2018 08:24:35,861 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3921:TargetedMS.ImportSkyZip.Core'
22 Mar 2018 08:24:35,866 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3921:TargetedMS.ImportSkyZip.Output'
22 Mar 2018 08:24:35,867 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-3921:b0bd3455-0d5b-1036-940b-3013bb9b1c47'
22 Mar 2018 08:24:35,884 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3921:TargetedMS.ImportSkyZip'
22 Mar 2018 08:24:35,900 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-3921:b0bd34cb-0d5b-1036-940b-3013bb9b1c47'
22 Mar 2018 08:24:35,900 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3921:TargetedMS.ImportSkyZip.Core'
22 Mar 2018 08:24:35,905 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3921:TargetedMS.ImportSkyZip.Output'
22 Mar 2018 08:24:35,907 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-3921:b0bd34e1-0d5b-1036-940b-3013bb9b1c47'
22 Mar 2018 08:24:35,924 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3921:TargetedMS.ImportSkyZip'
22 Mar 2018 08:24:35,951 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-3921:b0bd354e-0d5b-1036-940b-3013bb9b1c47'
22 Mar 2018 08:24:35,951 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3921:TargetedMS.ImportSkyZip.Core'
22 Mar 2018 08:24:35,957 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3921:TargetedMS.ImportSkyZip.Output'
22 Mar 2018 08:24:35,958 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-3921:b0bd3577-0d5b-1036-940b-3013bb9b1c47'
22 Mar 2018 08:24:35,961 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2018/Diamandis%20Lab%20-%20Schiza%20et%20al.%20TEX101%20polymorphism/@files/export/xar/experiments_and_runs.xar.exploded/Run28696/Skyline-PRM-16min_SP-controlpeptides_2018-03-19_00-25-52.sky.zip into the system
22 Mar 2018 08:24:35,967 INFO : Starting import from Skyline-PRM-16min_SP-controlpeptides_2018-03-19_00-25-52.sky.zip
22 Mar 2018 08:24:35,995 INFO : Starting to import Skyline document from Skyline-PRM-16min_SP-controlpeptides_2018-03-19_00-25-52.sky.zip
22 Mar 2018 08:24:35,996 INFO : Expanding Skyline-PRM-16min_SP-controlpeptides.skyd
22 Mar 2018 08:24:36,028 INFO : Expanding Skyline-PRM-16min_SP-controlpeptides.sky.view
22 Mar 2018 08:24:36,028 INFO : Expanding Skyline-PRM-16min_SP-controlpeptides.sky
22 Mar 2018 08:24:36,159 INFO : Inserting TEX101_mut
22 Mar 2018 08:24:36,964 INFO : Inserting tex101
22 Mar 2018 08:24:37,277 INFO : Inserting TEX101
22 Mar 2018 08:24:40,372 INFO : Completed import of Skyline document from Skyline-PRM-16min_SP-controlpeptides_2018-03-19_00-25-52.sky.zip
22 Mar 2018 08:24:40,385 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2018/Diamandis%20Lab%20-%20Schiza%20et%20al.%20TEX101%20polymorphism/@files/export/xar/experiments_and_runs.xar.exploded/Run28696/Skyline-PRM-16min_SP-controlpeptides_2018-03-19_00-25-52.sky.zip into the system
22 Mar 2018 08:24:40,385 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2018/Diamandis%20Lab%20-%20Schiza%20et%20al.%20TEX101%20polymorphism/@files/export/xar/experiments_and_runs.xar.exploded/Run28697/Skyline-PRM_16min_Homo-Hetero_2018-03-19_00-27-08.sky.zip into the system
22 Mar 2018 08:24:40,388 INFO : Starting import from Skyline-PRM_16min_Homo-Hetero_2018-03-19_00-27-08.sky.zip
22 Mar 2018 08:24:40,391 INFO : Starting to import Skyline document from Skyline-PRM_16min_Homo-Hetero_2018-03-19_00-27-08.sky.zip
22 Mar 2018 08:24:40,392 INFO : Expanding Skyline-PRM_16min_Homo-Hetero.skyd
22 Mar 2018 08:24:40,404 INFO : Expanding Skyline-PRM_16min_Homo-Hetero.sky.view
22 Mar 2018 08:24:40,404 INFO : Expanding Skyline-PRM_16min_Homo-Hetero.sky
22 Mar 2018 08:24:40,668 INFO : Inserting TEX101-WT
22 Mar 2018 08:24:41,143 INFO : Inserting TEX101-SNP
22 Mar 2018 08:24:44,170 INFO : Completed import of Skyline document from Skyline-PRM_16min_Homo-Hetero_2018-03-19_00-27-08.sky.zip
22 Mar 2018 08:24:44,175 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2018/Diamandis%20Lab%20-%20Schiza%20et%20al.%20TEX101%20polymorphism/@files/export/xar/experiments_and_runs.xar.exploded/Run28697/Skyline-PRM_16min_Homo-Hetero_2018-03-19_00-27-08.sky.zip into the system
22 Mar 2018 08:24:44,175 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2018/Diamandis%20Lab%20-%20Schiza%20et%20al.%20TEX101%20polymorphism/@files/export/xar/experiments_and_runs.xar.exploded/Run28698/Skyline-PRM-30min_recTEX101-SP_2018-03-19_00-27-55.sky.zip into the system
22 Mar 2018 08:24:44,177 INFO : Starting import from Skyline-PRM-30min_recTEX101-SP_2018-03-19_00-27-55.sky.zip
22 Mar 2018 08:24:44,181 INFO : Starting to import Skyline document from Skyline-PRM-30min_recTEX101-SP_2018-03-19_00-27-55.sky.zip
22 Mar 2018 08:24:44,181 INFO : Expanding Skyline-PRM-30min_recTEX101-SP.skyd
22 Mar 2018 08:24:44,184 INFO : Expanding Skyline-PRM-30min_recTEX101-SP.sky.view
22 Mar 2018 08:24:44,184 INFO : Expanding Skyline-PRM-30min_recTEX101-SP.sky
22 Mar 2018 08:24:44,208 INFO : Inserting tex101
22 Mar 2018 08:24:46,514 INFO : Completed import of Skyline document from Skyline-PRM-30min_recTEX101-SP_2018-03-19_00-27-55.sky.zip
22 Mar 2018 08:24:46,695 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2018/Diamandis%20Lab%20-%20Schiza%20et%20al.%20TEX101%20polymorphism/@files/export/xar/experiments_and_runs.xar.exploded/Run28698/Skyline-PRM-30min_recTEX101-SP_2018-03-19_00-27-55.sky.zip into the system
22 Mar 2018 08:24:46,695 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2018/Diamandis%20Lab%20-%20Schiza%20et%20al.%20TEX101%20polymorphism/@files/export/xar/experiments_and_runs.xar.exploded/Run28699/Skyline-PRM-60min_SP_GluCratios_2018-03-19_00-29-15.sky.zip into the system
22 Mar 2018 08:24:46,697 INFO : Starting import from Skyline-PRM-60min_SP_GluCratios_2018-03-19_00-29-15.sky.zip
22 Mar 2018 08:24:46,699 INFO : Starting to import Skyline document from Skyline-PRM-60min_SP_GluCratios_2018-03-19_00-29-15.sky.zip
22 Mar 2018 08:24:46,700 INFO : Expanding Skyline-PRM-60min_SP_GluCratios.skyd
22 Mar 2018 08:24:46,704 INFO : Expanding Skyline-PRM-60min_SP_GluCratios.sky.view
22 Mar 2018 08:24:46,705 INFO : Expanding Skyline-PRM-60min_SP_GluCratios.sky
22 Mar 2018 08:24:46,723 INFO : Inserting tex101
22 Mar 2018 08:24:48,314 INFO : Completed import of Skyline document from Skyline-PRM-60min_SP_GluCratios_2018-03-19_00-29-15.sky.zip
22 Mar 2018 08:24:48,320 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2018/Diamandis%20Lab%20-%20Schiza%20et%20al.%20TEX101%20polymorphism/@files/export/xar/experiments_and_runs.xar.exploded/Run28699/Skyline-PRM-60min_SP_GluCratios_2018-03-19_00-29-15.sky.zip into the system
22 Mar 2018 08:24:48,320 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2018/Diamandis%20Lab%20-%20Schiza%20et%20al.%20TEX101%20polymorphism/@files/export/xar/experiments_and_runs.xar.exploded/Run28700/Skyline-SRM-Verification%20of%20candidates_2018-03-19_00-29-56.sky.zip into the system
22 Mar 2018 08:24:48,323 INFO : Starting import from Skyline-SRM-Verification of candidates_2018-03-19_00-29-56.sky.zip
22 Mar 2018 08:24:48,326 INFO : Starting to import Skyline document from Skyline-SRM-Verification of candidates_2018-03-19_00-29-56.sky.zip
22 Mar 2018 08:24:48,327 INFO : Expanding Skyline-SRM-Verification of candidates.skyd
22 Mar 2018 08:24:48,384 INFO : Expanding Skyline-SRM-Verification of candidates.sky.view
22 Mar 2018 08:24:48,385 INFO : Expanding Skyline-SRM-Verification of candidates.sky
22 Mar 2018 08:24:48,511 INFO : Inserting TEX101_Q9BY14
22 Mar 2018 08:24:48,681 INFO : Inserting DPEP3_Q9H4B8
22 Mar 2018 08:24:48,985 INFO : Inserting SPAM1_P38567
22 Mar 2018 08:24:49,363 INFO : Inserting SPACA3_Q8IXA5
22 Mar 2018 08:24:49,661 INFO : Inserting ZPBP2_Q6X784
22 Mar 2018 08:24:50,035 INFO : Inserting ACR_P10323
22 Mar 2018 08:24:50,296 INFO : Inserting ACRBP_Q8NEB7
22 Mar 2018 08:24:50,511 INFO : Inserting ADAM29_Q9UKF5_d
22 Mar 2018 08:24:50,764 INFO : Inserting LY6K_Q17RY6
22 Mar 2018 08:24:51,015 INFO : Inserting IZUMO3_Q5VZ72
22 Mar 2018 08:24:54,089 INFO : Completed import of Skyline document from Skyline-SRM-Verification of candidates_2018-03-19_00-29-56.sky.zip
22 Mar 2018 08:24:54,095 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2018/Diamandis%20Lab%20-%20Schiza%20et%20al.%20TEX101%20polymorphism/@files/export/xar/experiments_and_runs.xar.exploded/Run28700/Skyline-SRM-Verification%20of%20candidates_2018-03-19_00-29-56.sky.zip into the system
22 Mar 2018 08:24:54,097 INFO : Done importing xar
22 Mar 2018 08:24:54,100 INFO : Loading wikis
22 Mar 2018 08:24:54,104 INFO : 0 wikis imported
22 Mar 2018 08:24:54,104 INFO : Done importing wikis
22 Mar 2018 08:24:54,107 INFO : Loading pages and webpart properties
22 Mar 2018 08:24:54,195 INFO : Done importing pages and webpart properties
22 Mar 2018 08:24:54,195 INFO :
22 Mar 2018 08:24:54,195 INFO : Experiment import completed successfully.
22 Mar 2018 08:24:54,195 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentImportTask'
22 Mar 2018 08:24:54,204 INFO : Starting to run task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask' at location 'webserver'
22 Mar 2018 08:24:54,204 INFO :
22 Mar 2018 08:24:54,204 INFO : Finishing up experiment copy.
22 Mar 2018 08:24:54,205 INFO : Creating a new TargetedMS experiment entry in targetedms.ExperimentAnnotations.
22 Mar 2018 08:24:54,210 INFO : Updating access URL to point to the new copy of the data.
22 Mar 2018 08:24:54,464 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask'