03 May 2017 11:37:48,244 INFO : Copying experiment "PSB33 sustains Photosystem II D1 protein under fluctuating light conditions" from folder /University of Turku - Plant Biology/PSB33 to /Panorama Public/2017/UTurkuPlantBio - PSB33
03 May 2017 11:37:48,244 INFO : =======================================
03 May 2017 11:37:48,293 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentExportTask' at location 'webserver'
03 May 2017 11:37:48,296 INFO : 
03 May 2017 11:37:48,296 INFO : Exporting experiment.
03 May 2017 11:37:49,638 INFO : 
03 May 2017 11:37:49,638 INFO : Experiment export completed successfully.
03 May 2017 11:37:49,638 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentExportTask'
03 May 2017 11:37:49,658 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentImportTask' at location 'webserver'
03 May 2017 11:37:49,658 INFO : 
03 May 2017 11:37:49,658 INFO : Importing experiment.
03 May 2017 11:37:49,659 WARN : Import of groups outside of project context not supported.
03 May 2017 11:37:49,663 INFO : Loading folder properties (folder type, settings and active modules)
03 May 2017 11:37:49,712 INFO : Done importing folder properties (folder type, settings and active modules)
03 May 2017 11:37:49,716 INFO : Loading container specific module properties
03 May 2017 11:37:49,724 INFO : Done importing container specific module properties
03 May 2017 11:37:49,727 INFO : Loading wikis
03 May 2017 11:37:49,729 INFO : 0 wikis imported
03 May 2017 11:37:49,729 INFO : Done importing wikis
03 May 2017 11:37:49,733 INFO : Loading xar
03 May 2017 11:37:49,852 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-2995:TargetedMS.ImportSkyZip'
03 May 2017 11:37:49,857 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-2995:TargetedMS.ImportSkyZip.Core'
03 May 2017 11:37:49,862 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-2995:TargetedMS.ImportSkyZip.Output'
03 May 2017 11:37:49,862 DEBUG: Protocol import complete
03 May 2017 11:37:49,865 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-2995:PSB33+sustains+Photosystem+II+D1+protein+under+fluctuating+light+conditions'
03 May 2017 11:37:49,865 DEBUG: Experiment/Run group import complete
03 May 2017 11:37:49,892 DEBUG: Protocol action set import complete
03 May 2017 11:37:49,913 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-2995:TargetedMS.ImportSkyZip'
03 May 2017 11:37:49,960 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-2995:c2b82653-122c-1035-a8e5-3013bb9b4292'
03 May 2017 11:37:49,960 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-2995:TargetedMS.ImportSkyZip.Core'
03 May 2017 11:37:49,965 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-2995:TargetedMS.ImportSkyZip.Output'
03 May 2017 11:37:49,966 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-2995:c2b82692-122c-1035-a8e5-3013bb9b4292'
03 May 2017 11:37:49,967 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2017/UTurkuPlantBio%20-%20PSB33/@files/export/xar/experiments_and_runs.xar.exploded/Run16143/psb33_vs_WT_thylakoid_proteins_ratios.sky.zip into the system
03 May 2017 11:37:49,971 INFO : Starting import from psb33_vs_WT_thylakoid_proteins_ratios.sky.zip
03 May 2017 11:37:49,983 INFO : Starting to import Skyline document from psb33_vs_WT_thylakoid_proteins_ratios.sky.zip
03 May 2017 11:37:49,984 INFO : Expanding iRT_Thylakoids_ratios.irtdb
03 May 2017 11:37:49,984 INFO : Expanding Thylakoids_PD2_28_06_2016.blib
03 May 2017 11:37:49,986 INFO : Expanding psb33_vs_WT_thylakoid_proteins_ratios.skyd
03 May 2017 11:37:50,082 INFO : Expanding psb33_vs_WT_thylakoid_proteins_ratios.sky.view
03 May 2017 11:37:50,083 INFO : Expanding psb33_vs_WT_thylakoid_proteins_ratios.sky
03 May 2017 11:37:50,382 INFO : Inserting ATCG00270.1
03 May 2017 11:37:51,261 INFO : Inserting ATCG00680.1
03 May 2017 11:37:53,850 INFO : Inserting ATCG00350.1
03 May 2017 11:37:54,781 INFO : Inserting ATCG00340.1
03 May 2017 11:37:56,174 INFO : Inserting AT1G68830.1
03 May 2017 11:37:56,982 INFO : Inserting AT5G01920.1
03 May 2017 11:37:57,738 INFO : Inserting AT4G27800.1
03 May 2017 11:37:58,403 INFO : Inserting AT1G71500.1
03 May 2017 11:37:59,440 INFO : Inserting AT1G29910.1
03 May 2017 11:38:02,262 INFO : Inserting AT2G05100.1
03 May 2017 11:38:03,035 INFO : Inserting ATCG00540.1
03 May 2017 11:38:04,008 INFO : Inserting ATCG00720.1
03 May 2017 11:38:05,073 INFO : Inserting Biognosys|iRT
03 May 2017 11:38:08,289 INFO : Completed import of Skyline document from psb33_vs_WT_thylakoid_proteins_ratios.sky.zip
03 May 2017 11:38:08,298 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2017/UTurkuPlantBio%20-%20PSB33/@files/export/xar/experiments_and_runs.xar.exploded/Run16143/psb33_vs_WT_thylakoid_proteins_ratios.sky.zip into the system
03 May 2017 11:38:08,298 INFO : Done importing xar
03 May 2017 11:38:08,304 INFO : Loading pages and webpart properties
03 May 2017 11:38:08,341 INFO : Done importing pages and webpart properties
03 May 2017 11:38:08,341 INFO : 
03 May 2017 11:38:08,341 INFO : Experiment import completed successfully.
03 May 2017 11:38:08,341 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentImportTask'
03 May 2017 11:38:08,354 INFO : Starting to run task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask' at location 'webserver'
03 May 2017 11:38:08,354 INFO : 
03 May 2017 11:38:08,354 INFO : Finishing up experiment copy.
03 May 2017 11:38:08,357 INFO : Creating a new TargetedMS experiment entry in targetedms.ExperimentAnnotations.
03 May 2017 11:38:08,360 INFO : Updating access URL to point to the new copy of the data.
03 May 2017 11:38:08,395 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask'