02 Nov 2017 09:48:09,017 INFO : Copying experiment "SpkG kinase phosphorylates the ferredoxin 5 protein in Synechocystis 6803" from folder /University of Turku - Plant Biology/Phosphopeptides_Synechocystis/SpkG in Synechocystis 6803 GT to /Panorama Public/2017/U of Turku - SpkG-Fd5-SYN_GT
02 Nov 2017 09:48:09,018 INFO : =======================================
02 Nov 2017 09:48:09,056 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentExportTask' at location 'webserver'
02 Nov 2017 09:48:09,060 INFO :
02 Nov 2017 09:48:09,060 INFO : Exporting experiment.
02 Nov 2017 09:48:09,821 INFO :
02 Nov 2017 09:48:09,821 INFO : Experiment export completed successfully.
02 Nov 2017 09:48:09,821 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentExportTask'
02 Nov 2017 09:48:09,839 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentImportTask' at location 'webserver'
02 Nov 2017 09:48:09,839 INFO :
02 Nov 2017 09:48:09,839 INFO : Importing experiment.
02 Nov 2017 09:48:09,845 INFO : Loading folder properties (folder type, settings and active modules)
02 Nov 2017 09:48:09,937 INFO : Done importing folder properties (folder type, settings and active modules)
02 Nov 2017 09:48:09,942 INFO : Loading container specific module properties
02 Nov 2017 09:48:09,952 INFO : Done importing container specific module properties
02 Nov 2017 09:48:09,959 INFO : Loading xar
02 Nov 2017 09:48:09,998 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-3620:TargetedMS.ImportSkyZip'
02 Nov 2017 09:48:10,006 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-3620:TargetedMS.ImportSkyZip.Core'
02 Nov 2017 09:48:10,013 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-3620:TargetedMS.ImportSkyZip.Output'
02 Nov 2017 09:48:10,013 DEBUG: Protocol import complete
02 Nov 2017 09:48:10,016 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-3620:SpkG+kinase+phosphorylates+the+ferredoxin+5+protein+in+Synechocystis+6803'
02 Nov 2017 09:48:10,017 DEBUG: Experiment/Run group import complete
02 Nov 2017 09:48:10,047 DEBUG: Protocol action set import complete
02 Nov 2017 09:48:10,077 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3620:TargetedMS.ImportSkyZip'
02 Nov 2017 09:48:10,099 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-3620:4b69f944-a052-1035-b638-3013bb9bc193'
02 Nov 2017 09:48:10,100 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3620:TargetedMS.ImportSkyZip.Core'
02 Nov 2017 09:48:10,106 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3620:TargetedMS.ImportSkyZip.Output'
02 Nov 2017 09:48:10,108 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-3620:4b69f96d-a052-1035-b638-3013bb9bc193'
02 Nov 2017 09:48:10,110 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2017/U%20of%20Turku%20-%20SpkG-Fd5-SYN_GT/@files/export/xar/experiments_and_runs.xar.exploded/Run23674/Phosphorylation%20of%20Fd5_for%20submission_2017-10-31_12-22-22.sky.zip into the system
02 Nov 2017 09:48:10,127 INFO : Starting import from Phosphorylation of Fd5_for submission_2017-10-31_12-22-22.sky.zip
02 Nov 2017 09:48:10,143 INFO : Starting to import Skyline document from Phosphorylation of Fd5_for submission_2017-10-31_12-22-22.sky.zip
02 Nov 2017 09:48:10,143 INFO : Expanding P-peptides 2nd set.irtdb
02 Nov 2017 09:48:10,144 INFO : Expanding non_P_SYN.blib
02 Nov 2017 09:48:10,145 INFO : Expanding Heavy_QExactive.blib
02 Nov 2017 09:48:10,146 INFO : Expanding PSYN3.blib
02 Nov 2017 09:48:10,146 INFO : Expanding Phosphorylation of Fd5_for submission.skyd
02 Nov 2017 09:48:10,164 INFO : Expanding Phosphorylation of Fd5_for submission.sky.view
02 Nov 2017 09:48:10,165 INFO : Expanding Phosphorylation of Fd5_for submission.sky
02 Nov 2017 09:48:10,171 WARN : The version of this Skyline document is 3.7. This is newer than the highest supported version 3.62
02 Nov 2017 09:48:10,523 INFO : Inserting slr0148
02 Nov 2017 09:48:10,646 INFO : Inserting slr0148
02 Nov 2017 09:48:10,732 INFO : Inserting slr0148
02 Nov 2017 09:48:10,935 INFO : Inserting slr0148
02 Nov 2017 09:48:11,018 INFO : Inserting slr0148
02 Nov 2017 09:48:11,113 INFO : Inserting slr0148
02 Nov 2017 09:48:11,220 INFO : Inserting slr0148
02 Nov 2017 09:48:11,316 INFO : Inserting slr0151
02 Nov 2017 09:48:11,415 INFO : Inserting slr0151
02 Nov 2017 09:48:11,527 INFO : Inserting slr2067
02 Nov 2017 09:48:11,607 INFO : Inserting sll1577
02 Nov 2017 09:48:11,685 INFO : Inserting sll1577
02 Nov 2017 09:48:11,749 INFO : Inserting Biognosys|iRT-Kit_WR
02 Nov 2017 09:48:14,710 INFO : Completed import of Skyline document from Phosphorylation of Fd5_for submission_2017-10-31_12-22-22.sky.zip
02 Nov 2017 09:48:14,716 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2017/U%20of%20Turku%20-%20SpkG-Fd5-SYN_GT/@files/export/xar/experiments_and_runs.xar.exploded/Run23674/Phosphorylation%20of%20Fd5_for%20submission_2017-10-31_12-22-22.sky.zip into the system
02 Nov 2017 09:48:14,719 INFO : Done importing xar
02 Nov 2017 09:48:14,722 INFO : Loading wikis
02 Nov 2017 09:48:14,723 INFO : 0 wikis imported
02 Nov 2017 09:48:14,723 INFO : Done importing wikis
02 Nov 2017 09:48:14,726 INFO : Loading pages and webpart properties
02 Nov 2017 09:48:14,750 INFO : Done importing pages and webpart properties
02 Nov 2017 09:48:14,750 INFO :
02 Nov 2017 09:48:14,750 INFO : Experiment import completed successfully.
02 Nov 2017 09:48:14,750 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentImportTask'
02 Nov 2017 09:48:14,757 INFO : Starting to run task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask' at location 'webserver'
02 Nov 2017 09:48:14,757 INFO :
02 Nov 2017 09:48:14,757 INFO : Finishing up experiment copy.
02 Nov 2017 09:48:14,759 INFO : Creating a new TargetedMS experiment entry in targetedms.ExperimentAnnotations.
02 Nov 2017 09:48:14,762 INFO : Updating access URL to point to the new copy of the data.
02 Nov 2017 09:48:14,781 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask'