Copying experiment: The conservation of sirtuin lipoamidase activity in bacteria as a regulator of metabolic enzyme complexes: /Panorama Public/2017/Cristea

Copying experiment: The conservation of sirtuin lipoamidase activity in bacteria as a regulator of metabolic enzyme complexes

Cristea - CobB PRM

Job Status

Created:

2017-09-27 14:01:06

Modified:

2020-04-20 17:03:54

Email:

vsharma@uw.edu

Status:

COMPLETE

Info:

Description:

Copying experiment: The conservation of sirtuin lipoamidase activity in bacteria as a regulator of metabolic enzyme complexes

File Path:

/data/labkey/files/Panorama Public/2017/Cristea - CobB PRM/@files/Experiment_400.log

Files:

Experiment_400.log

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27 Sep 2017 14:01:06,114 INFO : Copying experiment "The conservation of sirtuin lipoamidase activity in bacteria as a regulator of metabolic enzyme complexes" from folder /Princeton University - Cristea Lab/CobB PRM to /Panorama Public/2017/Cristea - CobB PRM

27 Sep 2017 14:01:06,114 INFO : =======================================

27 Sep 2017 14:01:06,197 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentExportTask' at location 'webserver'

27 Sep 2017 14:01:06,199 INFO :

27 Sep 2017 14:01:06,199 INFO : Exporting experiment.

27 Sep 2017 14:01:21,053 INFO :

27 Sep 2017 14:01:21,053 INFO : Experiment export completed successfully.

27 Sep 2017 14:01:21,053 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentExportTask'

27 Sep 2017 14:01:21,078 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentImportTask' at location 'webserver'

27 Sep 2017 14:01:21,078 INFO :

27 Sep 2017 14:01:21,078 INFO : Importing experiment.

27 Sep 2017 14:01:21,100 INFO : Loading folder properties (folder type, settings and active modules)

27 Sep 2017 14:01:21,181 INFO : Done importing folder properties (folder type, settings and active modules)

27 Sep 2017 14:01:21,185 INFO : Loading container specific module properties

27 Sep 2017 14:01:21,192 INFO : Done importing container specific module properties

27 Sep 2017 14:01:21,235 INFO : Loading xar

27 Sep 2017 14:01:22,542 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-3390:TargetedMS.ImportSkyZip'

27 Sep 2017 14:01:22,548 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-3390:TargetedMS.ImportSkyZip.Core'

27 Sep 2017 14:01:22,554 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-3390:TargetedMS.ImportSkyZip.Output'

27 Sep 2017 14:01:22,554 DEBUG: Protocol import complete

27 Sep 2017 14:01:22,631 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-3390:The+conservation+of+sirtuin+lipoamidase+activity+in+bacteria+as+a+regulator+of+metabolic+enzyme+complexes'

27 Sep 2017 14:01:22,631 DEBUG: Experiment/Run group import complete

27 Sep 2017 14:01:22,665 DEBUG: Protocol action set import complete

27 Sep 2017 14:01:22,696 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3390:TargetedMS.ImportSkyZip'

27 Sep 2017 14:01:23,031 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-3390:6a84e24c-6a4c-1035-b75e-3013bb9b5f12'

27 Sep 2017 14:01:23,031 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3390:TargetedMS.ImportSkyZip.Core'

27 Sep 2017 14:01:23,040 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3390:TargetedMS.ImportSkyZip.Output'

27 Sep 2017 14:01:23,041 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-3390:6a84e266-6a4c-1035-b75e-3013bb9b5f12'

27 Sep 2017 14:01:23,059 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3390:TargetedMS.ImportSkyZip'

27 Sep 2017 14:01:23,076 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-3390:6a84e53d-6a4c-1035-b75e-3013bb9b5f12'

27 Sep 2017 14:01:23,076 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3390:TargetedMS.ImportSkyZip.Core'

27 Sep 2017 14:01:23,080 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3390:TargetedMS.ImportSkyZip.Output'

27 Sep 2017 14:01:23,082 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-3390:6a84e5cb-6a4c-1035-b75e-3013bb9b5f12'

27 Sep 2017 14:01:23,098 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3390:TargetedMS.ImportSkyZip'

27 Sep 2017 14:01:23,123 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-3390:6a84df05-6a4c-1035-b75e-3013bb9b5f12'

27 Sep 2017 14:01:23,123 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3390:TargetedMS.ImportSkyZip.Core'

27 Sep 2017 14:01:23,127 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3390:TargetedMS.ImportSkyZip.Output'

27 Sep 2017 14:01:23,129 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-3390:6a84df1f-6a4c-1035-b75e-3013bb9b5f12'

27 Sep 2017 14:01:23,145 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3390:TargetedMS.ImportSkyZip'

27 Sep 2017 14:01:23,160 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-3390:6a84dd43-6a4c-1035-b75e-3013bb9b5f12'

27 Sep 2017 14:01:23,160 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3390:TargetedMS.ImportSkyZip.Core'

27 Sep 2017 14:01:23,165 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3390:TargetedMS.ImportSkyZip.Output'

27 Sep 2017 14:01:23,166 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-3390:6a84dd60-6a4c-1035-b75e-3013bb9b5f12'

27 Sep 2017 14:01:23,183 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3390:TargetedMS.ImportSkyZip'

27 Sep 2017 14:01:23,197 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-3390:44be04bb-6a56-1035-b75e-3013bb9b5f12'

27 Sep 2017 14:01:23,198 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3390:TargetedMS.ImportSkyZip.Core'

27 Sep 2017 14:01:23,202 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-3390:TargetedMS.ImportSkyZip.Output'

27 Sep 2017 14:01:23,203 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-3390:44be0502-6a56-1035-b75e-3013bb9b5f12'

27 Sep 2017 14:01:23,206 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2017/Cristea%20-%20CobB%20PRM/@files/export/xar/experiments_and_runs.xar.exploded/Run20236/Lipoylation_SRM_MC4100_WTvDeltaCobB_20151015_2017-08-23_13-10-33.sky.zip into the system

27 Sep 2017 14:01:23,211 INFO : Starting import from Lipoylation_SRM_MC4100_WTvDeltaCobB_20151015_2017-08-23_13-10-33.sky.zip

27 Sep 2017 14:01:23,222 INFO : Starting to import Skyline document from Lipoylation_SRM_MC4100_WTvDeltaCobB_20151015_2017-08-23_13-10-33.sky.zip

27 Sep 2017 14:01:23,223 INFO : Expanding Lipoylation_SRM_MC4100_WTvDeltaCobB_20151015.skyd

27 Sep 2017 14:01:23,500 INFO : Expanding Lipoylation_SRM_MC4100_WTvDeltaCobB_20151015.sky.view

27 Sep 2017 14:01:23,500 INFO : Expanding Lipoylation_SRM_MC4100_WTvDeltaCobB_20151015.sky

27 Sep 2017 14:01:23,503 WARN : The version of this Skyline document is 3.72. This is newer than the highest supported version 3.62

27 Sep 2017 14:01:23,791 INFO : Inserting Lipoyl peptides

27 Sep 2017 14:01:26,045 INFO : Completed import of Skyline document from Lipoylation_SRM_MC4100_WTvDeltaCobB_20151015_2017-08-23_13-10-33.sky.zip

27 Sep 2017 14:01:26,049 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2017/Cristea%20-%20CobB%20PRM/@files/export/xar/experiments_and_runs.xar.exploded/Run20236/Lipoylation_SRM_MC4100_WTvDeltaCobB_20151015_2017-08-23_13-10-33.sky.zip into the system

27 Sep 2017 14:01:26,049 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2017/Cristea%20-%20CobB%20PRM/@files/export/xar/experiments_and_runs.xar.exploded/Run20239/His_IP_PRM_20170414_2017-08-23_13-14-04.sky.zip into the system

27 Sep 2017 14:01:26,053 INFO : Starting import from His_IP_PRM_20170414_2017-08-23_13-14-04.sky.zip

27 Sep 2017 14:01:26,055 INFO : Starting to import Skyline document from His_IP_PRM_20170414_2017-08-23_13-14-04.sky.zip

27 Sep 2017 14:01:26,055 INFO : Expanding His_IP_PRM_20170414.blib

27 Sep 2017 14:01:26,057 INFO : Expanding His_IP_PRM_20170414.redundant.blib

27 Sep 2017 14:01:26,096 INFO : Expanding His_IP_PRM_20170414.skyd

27 Sep 2017 14:01:26,123 INFO : Expanding His_IP_PRM_20170414.sky.view

27 Sep 2017 14:01:26,123 INFO : Expanding His_IP_PRM_20170414.sky

27 Sep 2017 14:01:26,125 WARN : The version of this Skyline document is 3.72. This is newer than the highest supported version 3.62

27 Sep 2017 14:01:26,451 INFO : Inserting sp|P0A9P0|DLDH_ECOLI

27 Sep 2017 14:01:26,761 INFO : Inserting sp|P27248|GCST_ECOLI

27 Sep 2017 14:01:26,991 INFO : Inserting sp|P60716|LIPA_ECOLI

27 Sep 2017 14:01:27,230 INFO : Inserting sp|P32099|LPLA_ECOLI

27 Sep 2017 14:01:27,387 INFO : Inserting sp|P75960|NPD_ECOLI

27 Sep 2017 14:01:27,698 INFO : Inserting sp|P0AFG3|ODO1_ECOLI

27 Sep 2017 14:01:27,831 INFO : Inserting sp|P0AFG6|ODO2_ECOLI

27 Sep 2017 14:01:27,947 INFO : Inserting sp|P0AFG8|ODP1_ECOLI

27 Sep 2017 14:01:28,092 INFO : Inserting sp|P06959|ODP2_ECOLI

27 Sep 2017 14:01:29,569 INFO : Completed import of Skyline document from His_IP_PRM_20170414_2017-08-23_13-14-04.sky.zip

27 Sep 2017 14:01:29,574 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2017/Cristea%20-%20CobB%20PRM/@files/export/xar/experiments_and_runs.xar.exploded/Run20239/His_IP_PRM_20170414_2017-08-23_13-14-04.sky.zip into the system

27 Sep 2017 14:01:29,574 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2017/Cristea%20-%20CobB%20PRM/@files/export/xar/experiments_and_runs.xar.exploded/Run20235/CobB_ProteinLevels_IPTG_20150805_2017-08-23_13-02-40.sky.zip into the system

27 Sep 2017 14:01:29,577 INFO : Starting import from CobB_ProteinLevels_IPTG_20150805_2017-08-23_13-02-40.sky.zip

27 Sep 2017 14:01:29,580 INFO : Starting to import Skyline document from CobB_ProteinLevels_IPTG_20150805_2017-08-23_13-02-40.sky.zip

27 Sep 2017 14:01:29,580 INFO : Expanding CobB_ProteinLevels_IPTG_20150805.skyd

27 Sep 2017 14:01:29,698 INFO : Expanding CobB_ProteinLevels_IPTG_20150805.sky.view

27 Sep 2017 14:01:29,699 INFO : Expanding CobB_ProteinLevels_IPTG_20150805.sky

27 Sep 2017 14:01:29,701 WARN : The version of this Skyline document is 3.72. This is newer than the highest supported version 3.62

27 Sep 2017 14:01:29,794 INFO : Inserting sp|P75960|NPD_ECOLI

27 Sep 2017 14:01:31,306 INFO : Completed import of Skyline document from CobB_ProteinLevels_IPTG_20150805_2017-08-23_13-02-40.sky.zip

27 Sep 2017 14:01:31,311 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2017/Cristea%20-%20CobB%20PRM/@files/export/xar/experiments_and_runs.xar.exploded/Run20235/CobB_ProteinLevels_IPTG_20150805_2017-08-23_13-02-40.sky.zip into the system

27 Sep 2017 14:01:31,311 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2017/Cristea%20-%20CobB%20PRM/@files/export/xar/experiments_and_runs.xar.exploded/Run20234/CobB_ProteinLevels_WT_Delta_20150811_2017-08-23_12-59-30.sky.zip into the system

27 Sep 2017 14:01:31,313 INFO : Starting import from CobB_ProteinLevels_WT_Delta_20150811_2017-08-23_12-59-30.sky.zip

27 Sep 2017 14:01:31,316 INFO : Starting to import Skyline document from CobB_ProteinLevels_WT_Delta_20150811_2017-08-23_12-59-30.sky.zip

27 Sep 2017 14:01:31,316 INFO : Expanding CobB_ProteinLevels_WT_Delta_20150811.skyd

27 Sep 2017 14:01:31,446 INFO : Expanding CobB_ProteinLevels_WT_Delta_20150811.sky.view

27 Sep 2017 14:01:31,446 INFO : Expanding CobB_ProteinLevels_WT_Delta_20150811.sky

27 Sep 2017 14:01:31,447 WARN : The version of this Skyline document is 3.72. This is newer than the highest supported version 3.62

27 Sep 2017 14:01:31,517 INFO : Inserting sp|P75960|NPD_ECOLI

27 Sep 2017 14:01:32,070 INFO : Completed import of Skyline document from CobB_ProteinLevels_WT_Delta_20150811_2017-08-23_12-59-30.sky.zip

27 Sep 2017 14:01:32,079 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2017/Cristea%20-%20CobB%20PRM/@files/export/xar/experiments_and_runs.xar.exploded/Run20234/CobB_ProteinLevels_WT_Delta_20150811_2017-08-23_12-59-30.sky.zip into the system

27 Sep 2017 14:01:32,079 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2017/Cristea%20-%20CobB%20PRM/@files/export/xar/experiments_and_runs.xar.exploded/Run20244/Carbon_Sources_PRM_MC4100_WTvDeltaCobB_20170328_2017-08-23_13-17-40.sky.zip into the system

27 Sep 2017 14:01:32,084 INFO : Starting import from Carbon_Sources_PRM_MC4100_WTvDeltaCobB_20170328_2017-08-23_13-17-40.sky.zip

27 Sep 2017 14:01:32,089 INFO : Starting to import Skyline document from Carbon_Sources_PRM_MC4100_WTvDeltaCobB_20170328_2017-08-23_13-17-40.sky.zip

27 Sep 2017 14:01:32,090 INFO : Expanding Carbon_Sources_PRM_MC4100_WTvDeltaCobB_20170328.blib

27 Sep 2017 14:01:32,093 INFO : Expanding Carbon_Sources_PRM_MC4100_WTvDeltaCobB_20170328.redundant.blib

27 Sep 2017 14:01:32,164 INFO : Expanding Carbon_Sources_PRM_MC4100_WTvDeltaCobB_20170328.skyd

27 Sep 2017 14:01:33,502 INFO : Expanding Carbon_Sources_PRM_MC4100_WTvDeltaCobB_20170328.sky.view

27 Sep 2017 14:01:33,502 INFO : Expanding Carbon_Sources_PRM_MC4100_WTvDeltaCobB_20170328.sky

27 Sep 2017 14:01:33,506 WARN : The version of this Skyline document is 3.72. This is newer than the highest supported version 3.62

27 Sep 2017 14:01:33,719 INFO : Inserting sp|P0A9P0|DLDH_ECOLI

27 Sep 2017 14:01:34,123 INFO : Inserting sp|P75960|NPD_ECOLI

27 Sep 2017 14:01:34,712 INFO : Inserting sp|P0AFG3|ODO1_ECOLI

27 Sep 2017 14:01:35,118 INFO : Inserting sp|P0AFG6|ODO2_ECOLI

27 Sep 2017 14:01:35,546 INFO : Inserting sp|P0AFG8|ODP1_ECOLI

27 Sep 2017 14:01:35,953 INFO : Inserting sp|P06959|ODP2_ECOLI

27 Sep 2017 14:01:37,041 INFO : Completed import of Skyline document from Carbon_Sources_PRM_MC4100_WTvDeltaCobB_20170328_2017-08-23_13-17-40.sky.zip

27 Sep 2017 14:01:37,049 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2017/Cristea%20-%20CobB%20PRM/@files/export/xar/experiments_and_runs.xar.exploded/Run20244/Carbon_Sources_PRM_MC4100_WTvDeltaCobB_20170328_2017-08-23_13-17-40.sky.zip into the system

27 Sep 2017 14:01:37,055 INFO : Done importing xar

27 Sep 2017 14:01:37,063 INFO : Loading wikis

27 Sep 2017 14:01:37,067 INFO : 0 wikis imported

27 Sep 2017 14:01:37,067 INFO : Done importing wikis

27 Sep 2017 14:01:37,075 INFO : Loading pages and webpart properties

27 Sep 2017 14:01:37,124 INFO : Done importing pages and webpart properties

27 Sep 2017 14:01:37,125 INFO :

27 Sep 2017 14:01:37,125 INFO : Experiment import completed successfully.

27 Sep 2017 14:01:37,125 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentImportTask'

27 Sep 2017 14:01:37,144 INFO : Starting to run task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask' at location 'webserver'

27 Sep 2017 14:01:37,144 INFO :

27 Sep 2017 14:01:37,145 INFO : Finishing up experiment copy.

27 Sep 2017 14:01:37,147 INFO : Creating a new TargetedMS experiment entry in targetedms.ExperimentAnnotations.

27 Sep 2017 14:01:37,180 INFO : Updating access URL to point to the new copy of the data.

27 Sep 2017 14:01:37,219 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask'