Dear visitor,

The attached file contains an excel document that consists of 2 worksheets.
Sheet 1 clarifies which Skyline library was used for each figure.
Sheet 2 is a legend for each Skyline file showing which replicate corresponds to a certain sample (e.g. which constructs were transfected, what cell line was used, used compound, which affinity sequence was used for pullout experiments, ...)  

Kind regards,

Giel Vandemoortele

Dear visitor,

The skyline file "pfu_2016-01-21_09-10-33.sky.zip" present in the section "Targeted MS Runs" contains all results of the pyrococcus furiosus discovery runs.

The dat files resulting from the mascot searches are embedded as a spectral library, whereas the raw files are imported as result files. In this way all peptides can be visualized in the raw files together with the library match.

Kind regards,

An Staes