YLL024C: /Panorama Public/2016/PECAN - A Library Free Peptide Detection Tool for DIA Data/Manually curated peak boundaries library for hyperparameters determination

YLL024C

Manually curated peak boundaries library for hyperparameters determination

Protein

File	Yeast_WT_10mz_top5_204peptides_2016-09-21_16-11-00.sky.zip 263 MB SkyP file (link only, 1KB) Full Skyline file Copy relative URL to clipboard Copy full URL to clipboard
Description	SSA2 SGDID:S000003947, Chr XII from 97485-95566, Genome Release 64-1-1, reverse complement, Verified ORF, "ATP binding protein involved in protein folding and vacuolar import of proteins; member of heat shock protein 70 (HSP70) family; associated with the chaperonin-containing T-complex; present in the cytoplasm, vacuolar membrane and cell wall; 98% identical with Ssa1p, but subtle differences between the two proteins provide functional specificity with respect to propagation of yeast [URE3] prions and vacuolar-mediated degradations of gluconeogenesis enzymes"
Decoy	false
Accession	P10592
Note

Sequence Coverage

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By: Replicate: Modified forms: Combined Stacked

The number displayed on each peptide box is the rank
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M	S	K	A	V	G	I	D	L	G	T	T	Y	S	C	V	A	H	F	S	N	D	R	V	D	I	I	A	N	D	Q	G	N	R	T	T	P	S	F	V	G	F	T	D	T	E	R	L	I	G	D	A	A	K	N	Q	A	A	M	N	P	A	N	T	V	F	D	A	K	R	L	I	G	R	N	F	N	D	P	E	V	Q	G	D	M	K	H	F	P	F	K	L	I	D	V	D	G	K	P	Q
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I	Q	V	E	F	K	G	E	T	K	N	F	T	P	E	Q	I	S	S	M	V	L	G	K	M	K	E	T	A	E	S	Y	L	G	A	K	V	N	D	A	V	V	T	V	P	A	Y	F	N	D	S	Q	R	Q	A	T	K	D	A	G	T	I	A	G	L	N	V	L	R	I	I	N	E	P	T	A	A	A	I	A	Y	G	L	D	K	K	G	K	E	E	H	V	L	I	F	D	L	G	G	G


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T	F	D	V	S	L	L	S	I	E	D	G	I	F	E	V	K	A	T	A	G	D	T	H	L	G	G	E	D	F	D	N	R	L	V	N	H	F	I	Q	E	F	K	R	K	N	K	K	D	L	S	T	N	Q	R	A	L	R	R	L	R	T	A	C	E	R	A	K	R	T	L	S	S	S	A	Q	T	S	V	E	I	D	S	L	F	E	G	I	D	F	Y	T	S	I	T	R	A	R	F	E


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E	L	C	A	D	L	F	R	S	T	L	D	P	V	E	K	V	L	R	D	A	K	L	D	K	S	Q	V	D	E	I	V	L	V	G	G	S	T	R	I	P	K	V	Q	K	L	V	T	D	Y	F	N	G	K	E	P	N	R	S	I	N	P	D	E	A	V	A	Y	G	A	A	V	Q	A	A	I	L	T	G	D	E	S	S	K	T	Q	D	L	L	L	L	D	V	A	P	L	S	L	G	I


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E	T	A	G	G	V	M	T	K	L	I	P	R	N	S	T	I	P	T	K	K	S	E	V	F	S	T	Y	A	D	N	Q	P	G	V	L	I	Q	V	F	E	G	E	R	A	K	T	K	D	N	N	L	L	G	K	F	E	L	S	G	I	P	P	A	P	R	G	V	P	Q	I	E	V	T	F	D	V	D	S	N	G	I	L	N	V	S	A	V	E	K	G	T	G	K	S	N	K	I	T	I


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T	N	D	K	G	R	L	S	K	E	D	I	E	K	M	V	A	E	A	E	K	F	K	E	E	D	E	K	E	S	Q	R	I	A	S	K	N	Q	L	E	S	I	A	Y	S	L	K	N	T	I	S	E	A	G	D	K	L	E	Q	A	D	K	D	A	V	T	K	K	A	E	E	T	I	A	W	L	D	S	N	T	T	A	T	K	E	E	F	D	D	Q	L	K	E	L	Q	E	V	A	N	P
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I	M	S	K	L	Y	Q	A	G	G	A	P	E	G	A	A	P	G	G	F	P	G	G	A	P	P	A	P	E	A	E	G	P	T	V	E	E	V	D
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Intensity

(Log 10 base)

Features

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Chain

Cross-link

Initiator methionine

Modified residue

Region of interest

Annotations for HSP72_YEAST

Description	Heat shock protein SSA2
Gene name	SSA2
Organisms	Saccharomyces cerevisiae Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

Genbank IDs	GIs	Swiss-Prot Accessions	Swiss-Prot Names	Ensembl	IPI Numbers	GO Categories	Biological Processes
NP_013076.1	none loaded	D6VXY0 P10592	HSP72_YEAST	none loaded	none loaded	GO:0000329 GO:0005524 GO:0005576 GO:0005739 GO:0005829 GO:0005844 GO:0006457 GO:0006616 GO:0006950 GO:0009277 GO:0016887 GO:0051082	Stress response

Peptides

Select All Select None Show Selected Show Unselected Show All	Peptide Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Peptide Neutral Mass Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Missed Cleavages Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Avg. Measured RT Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Predicted RT Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	RT Score Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart
	NFNDPEVQGDMK	1392.5980	0	31.1824
	LEQADKDAVTK	1216.6299	1	18.0348
	KAEETIAWLDSNTTATK	1877.9371	1	37.6168
	EEFDDQLK	1022.4557	0	31.1477
	ELQEVANPIMSK	1357.6912	0	36.3967

Chromatograms

Display Chart Settings

Summary Charts

Peak Areas

Retention Times