YER089C: /Panorama Public/2016/PECAN - A Library Free Peptide Detection Tool for DIA Data/Manually curated peak boundaries library for hyperparameters determination

YER089C

Manually curated peak boundaries library for hyperparameters determination

Protein

File	Yeast_WT_10mz_top5_204peptides_2016-09-21_16-11-00.sky.zip 263 MB SkyP file (link only, 1KB) Full Skyline file Copy relative URL to clipboard Copy full URL to clipboard
Description	PTC2 SGDID:S000000891, Chr V from 337340-335946, Genome Release 64-1-1, reverse complement, Verified ORF, "Type 2C protein phosphatase (PP2C); dephosphorylates Hog1p to limit maximal osmostress induced kinase activity; dephosphorylates Ire1p to downregulate the unfolded protein response; dephosphorylates Cdc28p; inactivates the DNA damage checkpoint"
Decoy	false
Accession	P39966
Note

Sequence Coverage

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By: Replicate: Modified forms: Combined Stacked

The number displayed on each peptide box is the rank
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M	G	Q	I	L	S	N	P	V	I	D	K	E	S	H	S	G	A	D	S	L	T	A	F	G	L	C	A	M	Q	G	W	R	M	S	M	E	D	S	H	I	L	E	P	N	V	L	T	K	S	D	K	D	H	I	A	F	Y	G	I	F	D	G	H	G	G	A	K	V	A	E	Y	C	G	N	K	I	V	E	I	L	Q	E	Q	K	S	F	H	E	G	N	L	P	R	A	L	I	D	T	F
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I	N	T	D	V	K	L	L	Q	D	P	V	M	K	E	D	H	S	G	C	T	A	T	S	I	L	V	S	K	S	Q	N	L	L	V	C	G	N	A	G	D	S	R	T	V	L	A	T	D	G	N	A	K	A	L	S	Y	D	H	K	P	T	L	A	S	E	K	S	R	I	V	A	A	D	G	F	V	E	M	D	R	V	N	G	N	L	A	L	S	R	A	I	G	D	F	E	F	K	S	N
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P	K	L	G	P	E	E	Q	I	V	T	C	V	P	D	I	L	E	H	S	L	D	Y	D	R	D	E	F	V	I	L	A	C	D	G	I	W	D	C	L	T	S	Q	D	C	V	D	L	V	H	L	G	L	R	E	G	K	T	L	N	E	I	S	S	R	I	I	D	V	C	C	A	P	T	T	E	G	T	G	I	G	C	D	N	M	S	I	V	V	V	A	L	L	K	E	G	E	D	V	A


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Q	W	S	D	R	M	K	S	K	A	H	R	T	S	V	R	S	F	A	D	K	R	R	R	V	F	S	Y	Y	D	F	S	K	C	N	D	E	Q	V	F	A	I	T	T	K	K	P	Q	D	K	F	T	R	D	H	E	A	A	V	A	S	V	T	A	A	D	N	D	D	P	M	D	I	D	D	T	D	A	D	T	D	A	E	N	L	D	P	S	S	Q	S	K	S	K	T	S	G	P	I	D


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L	A	S	L	E	A	L	L	G	A	T	G	G	V	K	T	D	S	N	G	N	K	V	T	Y	T	L	P	Q	S	A	L	A	Q	L	L	Q	T	M	G	H	D	P	A	S	S	H	P	E	N	D	S	N	T	D	H	K	A	G	R	S	H	L	Q

Features

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Binding site

Chain

Compositionally biased region

Domain

Modified residue

Region of interest

Annotations for PP2C2_YEAST

Description	Protein phosphatase 2C homolog 2 (short name: PP2C-2)
Gene name	PTC2
Organisms	Saccharomyces cerevisiae Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

Genbank IDs	GIs	Swiss-Prot Accessions	Swiss-Prot Names	Ensembl	IPI Numbers	GO Categories	Molecular Functions
NP_011013.1	none loaded	D3DLZ6 P39966	PP2C2_YEAST	none loaded	none loaded	GO:0000077 GO:0000079 GO:0000173 GO:0004722 GO:0006470 GO:0030968 GO:0046872	Hydrolase Protein phosphatase

Peptides

Select All Select None Show Selected Show Unselected Show All	Peptide Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Peptide Neutral Mass Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Missed Cleavages Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Avg. Measured RT Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Predicted RT Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	RT Score Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart
	ALIDTFINTDVK	1348.7238	0	48.2862

Chromatograms

Display Chart Settings

Summary Charts

Peak Areas

Retention Times