YJR104C: /Panorama Public/2016/PECAN - A Library Free Peptide Detection Tool for DIA Data/Manually curated peak boundaries library for hyperparameters determination

YJR104C

Manually curated peak boundaries library for hyperparameters determination

Protein

File	Yeast_WT_10mz_top5_204peptides_2016-09-21_16-11-00.sky.zip 263 MB SkyP file (link only, 1KB) Full Skyline file Copy relative URL to clipboard Copy full URL to clipboard
Description	SOD1 SGDID:S000003865, Chr X from 623014-622550, Genome Release 64-1-1, reverse complement, Verified ORF, "Cytosolic copper-zinc superoxide dismutase; some mutations are analogous to those that cause ALS (amyotrophic lateral sclerosis) in humans"
Decoy	false
Accession	P00445
Note

Sequence Coverage

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By: Replicate: Modified forms: Combined Stacked

Annotations for SODC_YEAST

Description	Superoxide dismutase [Cu-Zn]
Gene name	SOD1
Organisms	Saccharomyces cerevisiae Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

Genbank IDs	GIs	Swiss-Prot Accessions	Swiss-Prot Names	Ensembl	IPI Numbers	GO Categories	Molecular Functions
NP_012638.1	none loaded	D6VWS3 P00445 Q68HB2	SODC_YEAST	none loaded	none loaded	GO:0001320 GO:0004784 GO:0005634 GO:0005758 GO:0005829 GO:0006801 GO:0006878 GO:0006882 GO:0031505 GO:0046872 GO:0050821 GO:0051091 GO:1901856	Antioxidant Oxidoreductase

Peptides

Select All Select None Show Selected Show Unselected Show All	Peptide Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Peptide Neutral Mass Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Missed Cleavages Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Avg. Measured RT Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Predicted RT Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	RT Score Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart
	THGAPTDEVR	1081.5152	0	17.1121
	SVVIHAGQDDLGK	1337.6939	0	27.6173

Chromatograms

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Summary Charts

Peak Areas

Retention Times