08 Aug 2016 16:13:47,387 INFO : Copying experiment "Detection of Low Abundance Ocean Bacteria Peptides" from folder /UW - Nunn Lab/Detection of Low Abundance Ocean Bacteria Peptides to /Panorama Public/2016/Nunn - Detection of Low Abundance Ocean Bacteria Peptides
08 Aug 2016 16:13:47,387 INFO : =======================================
08 Aug 2016 16:13:47,458 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentExportTask' at location 'webserver'
08 Aug 2016 16:13:47,460 INFO : 
08 Aug 2016 16:13:47,460 INFO : Exporting experiment.
08 Aug 2016 16:13:52,165 INFO : 
08 Aug 2016 16:13:52,165 INFO : Experiment export completed successfully.
08 Aug 2016 16:13:52,165 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentExportTask'
08 Aug 2016 16:13:52,182 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentImportTask' at location 'webserver'
08 Aug 2016 16:13:52,182 INFO : 
08 Aug 2016 16:13:52,182 INFO : Importing experiment.
08 Aug 2016 16:13:52,182 WARN : Import of groups outside of project context not supported.
08 Aug 2016 16:13:52,188 INFO : Loading folder properties (folder type, settings and active modules)
08 Aug 2016 16:13:52,294 INFO : Done importing folder properties (folder type, settings and active modules)
08 Aug 2016 16:13:52,300 INFO : Loading container specific module properties
08 Aug 2016 16:13:52,310 INFO : Done importing container specific module properties
08 Aug 2016 16:13:52,315 INFO : Loading wikis
08 Aug 2016 16:13:52,328 INFO : 0 wikis imported
08 Aug 2016 16:13:52,328 INFO : Done importing wikis
08 Aug 2016 16:13:52,333 INFO : Loading xar
08 Aug 2016 16:13:53,290 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-2312:TargetedMS.ImportSkyZip'
08 Aug 2016 16:13:53,293 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-2312:TargetedMS.ImportSkyZip.Core'
08 Aug 2016 16:13:53,296 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-2312:TargetedMS.ImportSkyZip.Output'
08 Aug 2016 16:13:53,296 DEBUG: Protocol import complete
08 Aug 2016 16:13:53,297 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-2312:Detection+of+Low+Abundance+Ocean+Bacteria+Peptides'
08 Aug 2016 16:13:53,297 DEBUG: Experiment/Run group import complete
08 Aug 2016 16:13:53,309 DEBUG: Protocol action set import complete
08 Aug 2016 16:13:53,339 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-2312:TargetedMS.ImportSkyZip'
08 Aug 2016 16:13:53,568 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-2312:c06f50dd-3fcc-1034-a98f-3013bb9b4640'
08 Aug 2016 16:13:53,568 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-2312:TargetedMS.ImportSkyZip.Core'
08 Aug 2016 16:13:53,574 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-2312:TargetedMS.ImportSkyZip.Output'
08 Aug 2016 16:13:53,575 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-2312:c06f5254-3fcc-1034-a98f-3013bb9b4640'
08 Aug 2016 16:13:53,593 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-2312:TargetedMS.ImportSkyZip'
08 Aug 2016 16:13:53,607 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-2312:c06f54a5-3fcc-1034-a98f-3013bb9b4640'
08 Aug 2016 16:13:53,607 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-2312:TargetedMS.ImportSkyZip.Core'
08 Aug 2016 16:13:53,612 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-2312:TargetedMS.ImportSkyZip.Output'
08 Aug 2016 16:13:53,613 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-2312:c06f54c3-3fcc-1034-a98f-3013bb9b4640'
08 Aug 2016 16:13:53,615 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2016/Nunn%20-%20Detection%20of%20Low%20Abundance%20Ocean%20Bacteria%20Peptides/@files/export/xar/experiments_and_runs.xar.exploded/Run8804/Detection%20of%20Low%20Abundance%20Bacteria%20Peptides%20SRM_2016-08-08_14-16-07.sky.zip into the system
08 Aug 2016 16:13:53,620 INFO : Starting import from Detection of Low Abundance Bacteria Peptides SRM_2016-08-08_14-16-07.sky.zip
08 Aug 2016 16:13:53,635 INFO : Starting to import Skyline document from Detection of Low Abundance Bacteria Peptides SRM_2016-08-08_14-16-07.sky.zip
08 Aug 2016 16:13:53,635 INFO : Expanding bactdetection.blib
08 Aug 2016 16:13:53,636 INFO : Expanding Detection of Low Abundance Bacteria Peptides SRM.skyd
08 Aug 2016 16:13:54,331 INFO : Expanding Detection of Low Abundance Bacteria Peptides SRM.sky.view
08 Aug 2016 16:13:54,331 INFO : Expanding Detection of Low Abundance Bacteria Peptides SRM.sky
08 Aug 2016 16:13:54,362 WARN : The version of this Skyline document is 3.54. This is newer than the highest supported version 2.62
08 Aug 2016 16:13:54,606 INFO : Inserting PRTC peptides
08 Aug 2016 16:13:56,203 INFO : Inserting sp|Q5LNP1|ATPB_RUEPO
08 Aug 2016 16:13:56,946 INFO : Inserting sp|Q5LMR5|EFTU_RUEPO
08 Aug 2016 16:13:57,776 INFO : Inserting sp|Q5LU99|HIS6_RUEPO
08 Aug 2016 16:13:58,534 INFO : Inserting sp|Q5LSU1|LPXB_RUEPO
08 Aug 2016 16:13:59,204 INFO : Inserting sp|Q5LN23|PNP_RUEPO
08 Aug 2016 16:13:59,880 INFO : Inserting tr|Q5LQQ3|Q5LQQ3_RUEPO
08 Aug 2016 16:14:00,571 INFO : Inserting tr|Q5LUX0|Q5LUX0_RUEPO
08 Aug 2016 16:14:01,310 INFO : Inserting tr|Q5LSB9|Q5LSB9_RUEPO
08 Aug 2016 16:14:01,904 INFO : Inserting tr|Q5LRJ4|Q5LRJ4_RUEPO
08 Aug 2016 16:14:02,634 INFO : Inserting tr|Q5LU48|Q5LU48_RUEPO
08 Aug 2016 16:14:03,370 INFO : Inserting tr|Q5LX27|Q5LX27_RUEPO
08 Aug 2016 16:14:03,823 INFO : Inserting tr|Q5LVD5|Q5LVD5_RUEPO
08 Aug 2016 16:14:04,573 INFO : Inserting tr|Q5LP17|Q5LP17_RUEPO
08 Aug 2016 16:14:05,256 INFO : Inserting tr|Q5LRU3|Q5LRU3_RUEPO
08 Aug 2016 16:14:05,893 INFO : Inserting tr|Q5LQB9|Q5LQB9_RUEPO
08 Aug 2016 16:14:06,573 INFO : Inserting tr|Q5LPJ5|Q5LPJ5_RUEPO
08 Aug 2016 16:14:07,234 INFO : Inserting tr|Q5LXC5|Q5LXC5_RUEPO
08 Aug 2016 16:14:07,460 INFO : Inserting tr|Q5LR88|Q5LR88_RUEPO
08 Aug 2016 16:14:08,106 INFO : Inserting tr|Q5LKD7|Q5LKD7_RUEPO
08 Aug 2016 16:14:08,544 INFO : Inserting tr|Q5LSK5|Q5LSK5_RUEPO
08 Aug 2016 16:14:09,012 INFO : Inserting tr|Q5LV09|Q5LV09_RUEPO
08 Aug 2016 16:14:09,680 INFO : Inserting tr|Q5LTN8|Q5LTN8_RUEPO
08 Aug 2016 16:14:10,281 INFO : Inserting tr|Q5LPY0|Q5LPY0_RUEPO
08 Aug 2016 16:14:10,925 INFO : Completed import of Skyline document from Detection of Low Abundance Bacteria Peptides SRM_2016-08-08_14-16-07.sky.zip
08 Aug 2016 16:14:10,932 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2016/Nunn%20-%20Detection%20of%20Low%20Abundance%20Ocean%20Bacteria%20Peptides/@files/export/xar/experiments_and_runs.xar.exploded/Run8804/Detection%20of%20Low%20Abundance%20Bacteria%20Peptides%20SRM_2016-08-08_14-16-07.sky.zip into the system
08 Aug 2016 16:14:10,933 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2016/Nunn%20-%20Detection%20of%20Low%20Abundance%20Ocean%20Bacteria%20Peptides/@files/export/xar/experiments_and_runs.xar.exploded/Run8805/Detection%20of%20Low%20Abundance%20Ocean%20Bacteria%20Peptides%20DIA_2016-08-08_14-19-56.sky.zip into the system
08 Aug 2016 16:14:10,938 INFO : Starting import from Detection of Low Abundance Ocean Bacteria Peptides DIA_2016-08-08_14-19-56.sky.zip
08 Aug 2016 16:14:10,943 INFO : Starting to import Skyline document from Detection of Low Abundance Ocean Bacteria Peptides DIA_2016-08-08_14-19-56.sky.zip
08 Aug 2016 16:14:10,944 INFO : Expanding bactdetection.blib
08 Aug 2016 16:14:10,945 INFO : Expanding Detection of Low Abundance Ocean Bacteria Peptides DIA.skyd
08 Aug 2016 16:14:11,450 INFO : Expanding Detection of Low Abundance Ocean Bacteria Peptides DIA.sky.view
08 Aug 2016 16:14:11,451 INFO : Expanding Detection of Low Abundance Ocean Bacteria Peptides DIA.sky
08 Aug 2016 16:14:11,459 WARN : The version of this Skyline document is 3.54. This is newer than the highest supported version 2.62
08 Aug 2016 16:14:11,563 INFO : Inserting sp|Q5LNP1|ATPB_RUEPO
08 Aug 2016 16:14:11,673 INFO : Inserting sp|Q5LMR5|EFTU_RUEPO
08 Aug 2016 16:14:11,758 INFO : Inserting sp|Q5LU99|HIS6_RUEPO
08 Aug 2016 16:14:11,845 INFO : Inserting sp|Q5LSU1|LPXB_RUEPO
08 Aug 2016 16:14:11,935 INFO : Inserting sp|Q5LN23|PNP_RUEPO
08 Aug 2016 16:14:12,026 INFO : Inserting tr|Q5LQQ3|Q5LQQ3_RUEPO
08 Aug 2016 16:14:12,116 INFO : Inserting tr|Q5LUX0|Q5LUX0_RUEPO
08 Aug 2016 16:14:12,207 INFO : Inserting tr|Q5LSB9|Q5LSB9_RUEPO
08 Aug 2016 16:14:12,312 INFO : Inserting tr|Q5LRJ4|Q5LRJ4_RUEPO
08 Aug 2016 16:14:12,402 INFO : Inserting tr|Q5LU48|Q5LU48_RUEPO
08 Aug 2016 16:14:12,495 INFO : Inserting tr|Q5LX27|Q5LX27_RUEPO
08 Aug 2016 16:14:12,595 INFO : Inserting tr|Q5LVD5|Q5LVD5_RUEPO
08 Aug 2016 16:14:12,709 INFO : Inserting tr|Q5LP17|Q5LP17_RUEPO
08 Aug 2016 16:14:12,802 INFO : Inserting tr|Q5LRU3|Q5LRU3_RUEPO
08 Aug 2016 16:14:12,901 INFO : Inserting tr|Q5LQB9|Q5LQB9_RUEPO
08 Aug 2016 16:14:13,007 INFO : Inserting tr|Q5LPJ5|Q5LPJ5_RUEPO
08 Aug 2016 16:14:13,099 INFO : Inserting tr|Q5LXC5|Q5LXC5_RUEPO
08 Aug 2016 16:14:13,206 INFO : Inserting tr|Q5LR88|Q5LR88_RUEPO
08 Aug 2016 16:14:13,298 INFO : Inserting tr|Q5LKD7|Q5LKD7_RUEPO
08 Aug 2016 16:14:13,419 INFO : Inserting tr|Q5LSK5|Q5LSK5_RUEPO
08 Aug 2016 16:14:13,538 INFO : Inserting tr|Q5LV09|Q5LV09_RUEPO
08 Aug 2016 16:14:13,695 INFO : Inserting tr|Q5LTN8|Q5LTN8_RUEPO
08 Aug 2016 16:14:13,907 INFO : Inserting tr|Q5LPY0|Q5LPY0_RUEPO
08 Aug 2016 16:14:14,022 INFO : Completed import of Skyline document from Detection of Low Abundance Ocean Bacteria Peptides DIA_2016-08-08_14-19-56.sky.zip
08 Aug 2016 16:14:14,029 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2016/Nunn%20-%20Detection%20of%20Low%20Abundance%20Ocean%20Bacteria%20Peptides/@files/export/xar/experiments_and_runs.xar.exploded/Run8805/Detection%20of%20Low%20Abundance%20Ocean%20Bacteria%20Peptides%20DIA_2016-08-08_14-19-56.sky.zip into the system
08 Aug 2016 16:14:14,030 INFO : Done importing xar
08 Aug 2016 16:14:14,036 INFO : Loading pages and webpart properties
08 Aug 2016 16:14:14,079 INFO : Done importing pages and webpart properties
08 Aug 2016 16:14:14,079 INFO : 
08 Aug 2016 16:14:14,079 INFO : Experiment import completed successfully.
08 Aug 2016 16:14:14,079 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentImportTask'
08 Aug 2016 16:14:14,095 INFO : Starting to run task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask' at location 'webserver'
08 Aug 2016 16:14:14,095 INFO : 
08 Aug 2016 16:14:14,095 INFO : Finishing up experiment copy.
08 Aug 2016 16:14:14,097 INFO : Creating a new TargetedMS experiment entry in targetedms.ExperimentAnnotations.
08 Aug 2016 16:14:14,101 INFO : Updating access URL to point to the new copy of the data.
08 Aug 2016 16:14:14,144 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask'