21 Sep 2016 15:44:50,621 INFO : Copying experiment "A general method for targeted quantitative cross-linking mass spectrometry" from folder /UW - Bruce Lab/PRM_XL_manuscript to /Panorama Public/2016/Bruce - PRM_XL_manuscript

21 Sep 2016 15:44:50,621 INFO : =======================================

21 Sep 2016 15:44:50,789 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentExportTask' at location 'webserver'

21 Sep 2016 15:44:50,791 INFO : 

21 Sep 2016 15:44:50,791 INFO : Exporting experiment.

21 Sep 2016 15:44:55,970 INFO : 

21 Sep 2016 15:44:55,970 INFO : Experiment export completed successfully.

21 Sep 2016 15:44:55,970 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentExportTask'

21 Sep 2016 15:44:55,989 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentImportTask' at location 'webserver'

21 Sep 2016 15:44:55,989 INFO : 

21 Sep 2016 15:44:55,989 INFO : Importing experiment.

21 Sep 2016 15:44:55,989 WARN : Import of groups outside of project context not supported.

21 Sep 2016 15:44:55,996 INFO : Loading folder properties (folder type, settings and active modules)

21 Sep 2016 15:44:56,063 INFO : Done importing folder properties (folder type, settings and active modules)

21 Sep 2016 15:44:56,068 INFO : Loading container specific module properties

21 Sep 2016 15:44:56,078 INFO : Done importing container specific module properties

21 Sep 2016 15:44:56,084 INFO : Loading wikis

21 Sep 2016 15:44:56,099 INFO : 0 wikis imported

21 Sep 2016 15:44:56,099 INFO : Done importing wikis

21 Sep 2016 15:44:56,104 INFO : Loading xar

21 Sep 2016 15:44:57,108 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-2377:TargetedMS.ImportSkyZip'

21 Sep 2016 15:44:57,113 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-2377:TargetedMS.ImportSkyZip.Core'

21 Sep 2016 15:44:57,116 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-2377:TargetedMS.ImportSkyZip.Output'

21 Sep 2016 15:44:57,116 DEBUG: Protocol import complete

21 Sep 2016 15:44:57,137 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-2377:A+general+method+for+targeted+quantitative+cross-linking+mass+spectrometry'

21 Sep 2016 15:44:57,137 DEBUG: Experiment/Run group import complete

21 Sep 2016 15:44:57,173 DEBUG: Protocol action set import complete

21 Sep 2016 15:44:57,266 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-2377:TargetedMS.ImportSkyZip'

21 Sep 2016 15:44:57,386 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-2377:1b817d9a-5dae-1034-951c-3013bb9b0ae1'

21 Sep 2016 15:44:57,386 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-2377:TargetedMS.ImportSkyZip.Core'

21 Sep 2016 15:44:57,414 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-2377:TargetedMS.ImportSkyZip.Output'

21 Sep 2016 15:44:57,415 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-2377:1b817dfe-5dae-1034-951c-3013bb9b0ae1'

21 Sep 2016 15:44:57,423 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-2377:TargetedMS.ImportSkyZip'

21 Sep 2016 15:44:57,450 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-2377:1b8173b4-5dae-1034-951c-3013bb9b0ae1'

21 Sep 2016 15:44:57,450 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-2377:TargetedMS.ImportSkyZip.Core'

21 Sep 2016 15:44:57,454 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-2377:TargetedMS.ImportSkyZip.Output'

21 Sep 2016 15:44:57,456 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-2377:1b817564-5dae-1034-951c-3013bb9b0ae1'

21 Sep 2016 15:44:57,458 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2016/Bruce%20-%20PRM_XL_manuscript/@files/export/xar/experiments_and_runs.xar.exploded/Run9543/Hsp90_SILAC_12_091516_2016-09-15_15-56-20.sky.zip into the system

21 Sep 2016 15:44:57,463 INFO : Starting import from Hsp90_SILAC_12_091516_2016-09-15_15-56-20.sky.zip

21 Sep 2016 15:44:57,488 INFO : Starting to import Skyline document from Hsp90_SILAC_12_091516_2016-09-15_15-56-20.sky.zip

21 Sep 2016 15:44:57,489 INFO : Expanding Hsp90_SILAC_12_091516.skyd

21 Sep 2016 15:44:58,329 INFO : Expanding Hsp90_SILAC_12_091516.sky.view

21 Sep 2016 15:44:58,329 INFO : Expanding Hsp90_SILAC_12_091516.sky

21 Sep 2016 15:44:58,354 WARN : The version of this Skyline document is 3.5. This is newer than the highest supported version 2.62

21 Sep 2016 15:44:58,492 INFO : Inserting peptide

21 Sep 2016 15:45:13,107 INFO : Completed import of Skyline document from Hsp90_SILAC_12_091516_2016-09-15_15-56-20.sky.zip

21 Sep 2016 15:45:13,114 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2016/Bruce%20-%20PRM_XL_manuscript/@files/export/xar/experiments_and_runs.xar.exploded/Run9543/Hsp90_SILAC_12_091516_2016-09-15_15-56-20.sky.zip into the system

21 Sep 2016 15:45:13,114 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2016/Bruce%20-%20PRM_XL_manuscript/@files/export/xar/experiments_and_runs.xar.exploded/Run9540/BSA_BDP_30_PRM_XLMS_BruceLab_CSHL_091516_2016-09-15_15-30-07.sky.zip into the system

21 Sep 2016 15:45:13,119 INFO : Starting import from BSA_BDP_30_PRM_XLMS_BruceLab_CSHL_091516_2016-09-15_15-30-07.sky.zip

21 Sep 2016 15:45:13,133 INFO : Starting to import Skyline document from BSA_BDP_30_PRM_XLMS_BruceLab_CSHL_091516_2016-09-15_15-30-07.sky.zip

21 Sep 2016 15:45:13,134 INFO : Expanding BSA_BDP_30_PRM_XLMS_BruceLab_CSHL_091516.skyd

21 Sep 2016 15:45:14,039 INFO : Expanding BSA_BDP_30_PRM_XLMS_BruceLab_CSHL_091516.sky.view

21 Sep 2016 15:45:14,039 INFO : Expanding BSA_BDP_30_PRM_XLMS_BruceLab_CSHL_091516.sky

21 Sep 2016 15:45:14,077 WARN : The version of this Skyline document is 3.5. This is newer than the highest supported version 2.62

21 Sep 2016 15:45:14,144 INFO : Inserting peptide

21 Sep 2016 15:45:56,919 INFO : Completed import of Skyline document from BSA_BDP_30_PRM_XLMS_BruceLab_CSHL_091516_2016-09-15_15-30-07.sky.zip

21 Sep 2016 15:45:56,927 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2016/Bruce%20-%20PRM_XL_manuscript/@files/export/xar/experiments_and_runs.xar.exploded/Run9540/BSA_BDP_30_PRM_XLMS_BruceLab_CSHL_091516_2016-09-15_15-30-07.sky.zip into the system

21 Sep 2016 15:45:56,927 INFO : Done importing xar

21 Sep 2016 15:45:56,934 INFO : Loading pages and webpart properties

21 Sep 2016 15:45:56,982 INFO : Done importing pages and webpart properties

21 Sep 2016 15:45:56,982 INFO : 

21 Sep 2016 15:45:56,983 INFO : Experiment import completed successfully.

21 Sep 2016 15:45:56,983 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentImportTask'

21 Sep 2016 15:45:57,000 INFO : Starting to run task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask' at location 'webserver'

21 Sep 2016 15:45:57,000 INFO : 

21 Sep 2016 15:45:57,000 INFO : Finishing up experiment copy.

21 Sep 2016 15:45:57,003 INFO : Creating a new TargetedMS experiment entry in targetedms.ExperimentAnnotations.

21 Sep 2016 15:45:57,099 INFO : Updating access URL to point to the new copy of the data.

21 Sep 2016 15:45:57,141 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask'