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segments_reproducibility_MS2_SWATH_optimization_2015-02-17_12-13-36.sky.zip

Schilling - MS1_MS2_SWATH

Document Summary

 
segments_reproducibility_MS2_SWATH_optimization_2015-02-17_12-13-36.sky.zip
189 MB 
  1 version
 
30 proteins, 83 peptides, 79 precursors, 632 transitions  -  10 replicates  -  Skyline-daily (64-bit) 2.6.1.7171

Peptide Map

 
23.8  1197.51sp|P62737|ACTA_MOUSE53-63 
(K)DSYVGDEAQSK(R)
 1,932,508
23.8  1197.51sp|P68033|ACTC_MOUSE53-63 
(K)DSYVGDEAQSK(R)
 2,045,003
24.1  855.48sp|P51881|ADT2_MOUSE24-31 
(K)TAVAPIER(V)
 14,582,511
24.1  855.48sp|P48962|ADT1_MOUSE24-31 
(K)TAVAPIER(V)
 14,547,256
24.1  855.48sp|Q3V132|ADT4_MOUSE37-44 
(K)TAVAPIER(V)
 14,592,965
24.3  1059.51sp|P47738|ALDH2_MOUSE386-396 
(K)LLCGGGAAADR(G)
Carbamidomethyl Cysteine @ C38816,782,700
24.6  1227.61sp|Q99PG0|AAAD_MOUSE298-309 
(K)NPTPGSSELAQK(Y)
 1,515,672
27.2  1249.57sp|P07724|ALBU_MOUSE35-44 
(R)YNDLGEQHFK(G)
 11,416,718
27.6  1374.64sp|Q9D3D9|ATPD_MOUSE137-150 
(K)AQSELSGAADEAAR(A)
 14,009,688
28.3  1600.76sp|Q99L13|3HIDH_MOUSE79-94 
(K)EAGEQVASSPAEVAEK(A)
 3,942,635
29.0  1194.58sp|Q9R0H0|ACOX1_MOUSE149-159 
(R)GLETTATYDPK(T)
 10,633,236
30.3  1305.64sp|Q99L13|3HIDH_MOUSE284-296 
(K)DLGLAQDSATSTK(T)
 7,207,930
30.5  855.49sp|Q3V132|ADT4_MOUSE86-93 
(R)GNLANVIR(Y)
 31,303,412
30.7  1458.58sp|P07724|ALBU_MOUSE106-117 
(R)ENYGELADCCTK(Q)
Carbamidomethyl Cysteine @ C114,
Carbamidomethyl Cysteine @ C115		12,887,581
30.9  1061.54sp|P97450|ATP5J_MOUSE100-108 
(K)FEVIDKPQS(-)
 16,541,618
31.8  1446.72sp|Q8CHT0|AL4A1_MOUSE509-523 
(K)STGSVVGQQPFGGAR(A)
 13,280,684
32.0  860.44sp|P51881|ADT2_MOUSE156-163 
(K)GLGDCLVK(I)
Carbamidomethyl Cysteine @ C16036,866,616
32.2  876.48sp|P05202|AATM_MOUSE140-147 
(R)VGASFLQR(F)
 30,723,528
32.3  1225.57sp|Q8CHT0|AL4A1_MOUSE498-508 
(R)NAAGNFYINDK(S)
 12,842,669
32.6  935.50sp|P16460|ASSY_MOUSE59-66 
(K)VFIEDVSK(E)
 13,385,119
33.7  1458.75sp|P05202|AATM_MOUSE69-81 
(R)DDNGKPYVLPSVR(K)
 16,631,359
33.8  1980.92sp|P07724|ALBU_MOUSE585-602 
(K)AADKDTCFSTEGPNLVTR(C)
Carbamidomethyl Cysteine @ C59126,373,088
34.4  1867.91sp|Q99KI0|ACON_MOUSE69-84 
(K)IVYGHLDDPANQEIER(G)
 13,282,278
34.5  905.46sp|P45952|ACADM_MOUSE249-256 
(R)GIAFEDVR(V)
 9,256,970
34.6  1546.74sp|P51174|ACADL_MOUSE346-358 
(R)AFVDSCLQLHETK(R)
Carbamidomethyl Cysteine @ C3518,442,735
34.9  1170.62sp|Q03265|ATPA_MOUSE150-161 
(R)VVDALGNAIDGK(G)
 100,076,688
35.2  1397.82sp|P05202|AATM_MOUSE326-338 
(R)IAATILTSPDLRK(Q)
 5,114,052
35.5  1249.61sp|P51174|ACADL_MOUSE52-61 
(R)IFSSEHDIFR(E)
 11,854,902
35.6  999.57sp|Q03265|ATPA_MOUSE74-83 
(R)VLSIGDGIAR(V)
 82,645,592
36.2  1462.74sp|Q99KI0|ACON_MOUSE412-424 
(K)SQFTITPGSEQIR(A)
 9,772,865
36.3  1489.72sp|Q91Y97|ALDOB_MOUSE29-43 
(K)GILAADESVGTMGNR(L)
 9,604,928
36.3  1329.75sp|Q9DBF1|AL7A1_MOUSE219-232 
(K)GAPTTSLVSVAVTK(I)
 16,347,183
37.0  1406.74sp|Q99K67|AASS_MOUSE913-925 
(K)AEGIVFNTQSTIK(L)
 6,715,880
37.9  1556.80sp|P05202|AATM_MOUSE108-122 
(K)ASAELALGENNEVLK(S)
 26,211,024
38.8  1401.70sp|P45952|ACADM_MOUSE58-69 
(R)EEIIPVAPEYDK(S)
 19,517,682
38.9  1793.03sp|P05202|AATM_MOUSE310-325 
(K)ILIRPLYSNPPLNGAR(I)
 23,834,384
39.1  2065.97sp|P05202|AATM_MOUSE263-279 
(R)HFIEQGINVCLCQSYAK(N)
Carbamidomethyl Cysteine @ C272,
Carbamidomethyl Cysteine @ C274		15,360,182
39.3  1432.80sp|Q8VCW8|ACSF2_MOUSE379-393 
(R)GGVIAGSPAPPELIR(A)
 19,704,380
39.7  1448.80sp|P05202|AATM_MOUSE126-139 
(R)FVTVQTISGTGALR(V)
 35,856,800
39.9  2305.16sp|Q91VA0|ACSM1_MOUSE355-376 
(R)TGLSIHEVYGQSETGISSATLR(E)
 23,222,928
40.2  1666.76sp|Q99KI0|ACON_MOUSE657-671 
(R)WVVIGDENYGEGSSR(E)
 5,489,260
40.2  1269.73sp|P05202|AATM_MOUSE326-337 
(R)IAATILTSPDLR(K)
 24,091,914
40.4  1583.70sp|Q8VCW8|ACSF2_MOUSE491-504 
(R)TGDIALMDEQGFCK(I)
Carbamidomethyl Cysteine @ C5036,850,759
40.7  1535.88sp|Q9R0H0|ACOX1_MOUSE183-196 
(K)TSNHAIVLAQLITR(G)
 17,430,212
40.7  1743.88sp|Q8CHT0|AL4A1_MOUSE31-46 
(K)VTNEPILAFSQGSPER(D)
 13,128,462
40.9  1582.82sp|P55096|ABCD3_MOUSE182-195 
(R)IANPDQLLTQDVEK(F)
 6,411,068
41.2  1223.69sp|Q07417|ACADS_MOUSE52-62 
(K)ELVPIAAQLDR(E)
 23,406,182
41.6  1546.82sp|Q99PG0|AAAD_MOUSE135-149 
(K)LDAVVVSTDYGLAPK(H)
 7,495,190
41.8  1015.57sp|Q9R0H0|ACOX1_MOUSE614-623 
(K)DVTLGSVLGR(Y)
 19,320,470
41.9  1290.63sp|Q07417|ACADS_MOUSE251-262 
(K)ENLLGEPGMGFK(I)
 8,024,792
42.2  1616.81sp|Q9R0H0|ACOX1_MOUSE197-210 
(R)GECYGLHAFVVPIR(E)
Carbamidomethyl Cysteine @ C19919,471,902
42.4  1676.90sp|Q9R0H0|ACOX1_MOUSE160-174 
(K)TQEFILNSPTVTSIK(W)
 15,585,012
42.6  2833.34sp|P47738|ALDH2_MOUSE55-80 
(K)TFPTVNPSTGEVICQVAEGNKEDVDK(A)
Carbamidomethyl Cysteine @ C6829,172,522
42.9  2458.22sp|P41216|ACSL1_MOUSE50-72 
(K)ALKPPCDLSMQSVEIAGTTDGIR(R)
Carbamidomethyl Cysteine @ C559,059,875
43.0  1509.74sp|P41216|ACSL1_MOUSE492-504 
(K)LVDVEEMNYLASK(G)
 12,887,391
43.1  1970.97sp|Q61694|3BHS5_MOUSE187-203 
(R)LPFIYGEECQVTSTTVK(T)
Carbamidomethyl Cysteine @ C1951,634,117
45.0  2321.25sp|P05202|AATM_MOUSE408-430 
(R)ISVAGVTSGNVGYLAHAIHQVTK(-)
 37,432,752
46.2  1773.82sp|P47738|ALDH2_MOUSE327-340 
(R)TFVQENVYDEFVER(S)
 61,699,684
46.2  1965.99sp|P05202|AATM_MOUSE91-107 
(K)NLDKEYLPIGGLAEFCK(A)
Carbamidomethyl Cysteine @ C10633,639,720
46.4  2489.27sp|Q61838|A2M_MOUSE325-348 
(K)IKEEGTGIELTGIGSCEIANALSK(L)
Carbamidomethyl Cysteine @ C3403,745,712
46.6  2267.12sp|Q61767|3BHS4_MOUSE72-94 
(R)ACQGMSAVIHTAAAIDPLGAASR(Q)
Carbamidomethyl Cysteine @ C738,410,153
47.8  1633.80sp|Q61694|3BHS5_MOUSE337-350 
(R)DLGYQPLVSWEEAK(Q)
 10,960,408
47.8  2359.12sp|Q8VCW8|ACSF2_MOUSE251-271 
(R)FLSCYDPINIQFTSGTTGNPK(G)
Carbamidomethyl Cysteine @ C25413,447,453
47.9  1786.90sp|Q91Y97|ALDOB_MOUSE244-259 
(K)YTPEQVAMATVTALHR(T)
 12,941,210
48.4  1500.79sp|Q9R0H0|ACOX1_MOUSE513-525 
(K)EVAWNLTSVDLVR(A)
 13,134,762
49.7  2240.18sp|Q91VA0|ACSM1_MOUSE509-527 
(K)AFIVLNPEFLSHDQEQLIK(E)
 43,111,244
49.8  1645.73sp|P05202|AATM_MOUSE186-200 
(K)TCGFDFSGALEDISK(I)
Carbamidomethyl Cysteine @ C18733,126,370
49.9  1445.73sp|P51881|ADT2_MOUSE81-92 
(R)YFPTQALNFAFK(D)
 19,989,204
50.4  2366.19sp|Q9R0H0|ACOX1_MOUSE10-31 
(R)AAATFNPELITHILDGSPENTR(R)
 28,778,628
50.5  2103.03sp|Q03265|ATPA_MOUSE104-123 
(K)GMSLNLEPDNVGVVVFGNDK(L)
 41,059,260
51.7  3291.73sp|Q99PG0|AAAD_MOUSE213-242 
(K)VQALIYPALQALDTNVPSQQEGSHFPVLTR(S)
 8,702,498
53.0  1985.06sp|Q07417|ACADS_MOUSE273-292 
(R)IGIASQALGIAQASLDCAVK(Y)
Carbamidomethyl Cysteine @ C28936,333,532
53.3  1843.05sp|P47738|ALDH2_MOUSE212-228 
(K)VAEQTPLTALYVANLIK(E)
 38,836,592
53.9  1260.61sp|Q99L13|3HIDH_MOUSE321-330 
(K)DFSSVFQYLR(E)
 10,045,758
55.4  1814.91sp|P16460|ASSY_MOUSE245-260 
(R)TTSLELFMYLNEVAGK(H)
 11,487,370
55.9  2795.34sp|P48962|ADT1_MOUSE112-138 
(R)YFAGNLASGGAAGATSLCFVYPLDFAR(T)
Carbamidomethyl Cysteine @ C12986,704,008
56.1  1840.89sp|Q8VCW8|ACSF2_MOUSE516-531 
(R)GGENIYPAELEDFFLK(H)
 20,596,598
56.2  1255.66sp|Q99K67|AASS_MOUSE762-772 
(K)QLLCDLVGISR(S)
Carbamidomethyl Cysteine @ C765,
Gln->pyro-Glu (N-term Q) @ Q762		4,265,081
57.4  2444.37sp|Q9R0H0|ACOX1_MOUSE592-613 
(R)ILELLTVTRPNAVALVDAFDFK(D)
 33,899,280