Protocol: Skyline Document Import: /Panorama Public/2015/Schilling - MS1_MS2_SWATH

Protocol: Skyline Document Import

Schilling - MS1_MS2_SWATH

Standard Properties

Name	Skyline Document Import
Contact
Instrument
Software
Description
Max input data per instance
Max input material per instance	0
Output data per instance
Output material per instance

Protocol Parameters

ApplicationLSIDTemplate	${RunLSIDBase}:SimpleProtocol.InputStep
ApplicationName	Skyline Document Import Protocol

Protocol Details

Material Inputs

Name Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Sample Set Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart
No data to show.

Data Inputs

Name Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Data Class Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart
No data to show.

Material Outputs

Name Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Sample Set Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart
No data to show.

Data Outputs

Name Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Data Class Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart
No data to show.

Protocol Steps

Step	Name	Description
1	Skyline Document Import
10	Skyline Document Import - Core
20	Skyline Document Import - Output

Runs Using This Protocol

Select All Select None Show Selected Show Unselected Show All	Flag Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart		Name Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Created Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Created By Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Protocol Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Run Groups Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart
			segments_reproducibility_MS2_SWATH_optimization_2015-02-17_12-13-36.sky.zip	2015-06-18 21:56:19	Vagisha Sharma	Skyline Document Import	MS1 Peptide Ion Intensity Chromatograms in MS2 (SWATH) Data Independent Acquisitions. Improving Post Acquisition Analysis of Proteomic Experiments
			DCA_MS1_MS2_kinase_inhibitor_study_v2c_2015-02-17_14-32-50.sky.zip	2015-06-18 21:56:19	Vagisha Sharma	Skyline Document Import	MS1 Peptide Ion Intensity Chromatograms in MS2 (SWATH) Data Independent Acquisitions. Improving Post Acquisition Analysis of Proteomic Experiments
			3to1_Mito_all_peptides_90min_25Da_SWATH_1021_2014_v3_noDDA_0217_2015_2015-02-17_11-03-05.sky.zip	2015-06-18 21:56:19	Vagisha Sharma	Skyline Document Import	MS1 Peptide Ion Intensity Chromatograms in MS2 (SWATH) Data Independent Acquisitions. Improving Post Acquisition Analysis of Proteomic Experiments
			Phospho_isomer_response_ratios_1to1_2015-03-02_10-11-55.sky.zip	2015-06-18 21:56:18	Vagisha Sharma	Skyline Document Import	MS1 Peptide Ion Intensity Chromatograms in MS2 (SWATH) Data Independent Acquisitions. Improving Post Acquisition Analysis of Proteomic Experiments
			Phospho_isomer_response_ratios_1to2_2015-03-02_10-11-17.sky.zip	2015-06-18 21:56:18	Vagisha Sharma	Skyline Document Import	MS1 Peptide Ion Intensity Chromatograms in MS2 (SWATH) Data Independent Acquisitions. Improving Post Acquisition Analysis of Proteomic Experiments
			Phospho_isomer_response_ratios_4to1_1to4_2015-03-02_10-10-51.sky.zip	2015-06-18 21:56:18	Vagisha Sharma	Skyline Document Import	MS1 Peptide Ion Intensity Chromatograms in MS2 (SWATH) Data Independent Acquisitions. Improving Post Acquisition Analysis of Proteomic Experiments
			Phospho_isomer_response_ratios_8to1_1to8_2015-03-02_10-10-11.sky.zip	2015-06-18 21:56:18	Vagisha Sharma	Skyline Document Import	MS1 Peptide Ion Intensity Chromatograms in MS2 (SWATH) Data Independent Acquisitions. Improving Post Acquisition Analysis of Proteomic Experiments
			Phospho_isomer_response_ratios_16to1_1to16_2015-03-02_10-09-21.sky.zip	2015-06-18 21:56:18	Vagisha Sharma	Skyline Document Import	MS1 Peptide Ion Intensity Chromatograms in MS2 (SWATH) Data Independent Acquisitions. Improving Post Acquisition Analysis of Proteomic Experiments