28 Apr 2015 22:25:22,306 INFO : Copying experiment "Mtb ALF-SWATH: Dilution series of AQUA peptides used for anchor protein quantification" from folder /Aebersold/ludwig/ALF-SWATH Mtb/ALF-SWATH_anchor_proteins_dilution_series to /Panorama Public/2015/Ludwig_Mtb_dilutions
28 Apr 2015 22:25:22,306 INFO : =======================================
28 Apr 2015 22:25:22,395 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentExportTask' at location 'webserver'
28 Apr 2015 22:25:22,396 INFO : 
28 Apr 2015 22:25:22,396 INFO : Exporting experiment.
28 Apr 2015 22:25:37,414 INFO : 
28 Apr 2015 22:25:37,414 INFO : Experiment export completed successfully.
28 Apr 2015 22:25:37,414 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentExportTask'
28 Apr 2015 22:25:37,424 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentImportTask' at location 'webserver'
28 Apr 2015 22:25:37,424 INFO : 
28 Apr 2015 22:25:37,424 INFO : Importing experiment.
28 Apr 2015 22:25:37,429 INFO : Loading folder properties (folder type, settings and active modules)
28 Apr 2015 22:25:37,485 INFO : Done importing folder properties (folder type, settings and active modules)
28 Apr 2015 22:25:37,488 INFO : Done importing container specific module properties
28 Apr 2015 22:25:37,491 INFO : Loading wikis
28 Apr 2015 22:25:37,491 INFO : 0 wikis imported
28 Apr 2015 22:25:37,491 INFO : Done importing wikis
28 Apr 2015 22:25:37,494 INFO : Loading xar
28 Apr 2015 22:25:39,454 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-820:TargetedMS.ImportSkyZip'
28 Apr 2015 22:25:39,460 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-820:TargetedMS.ImportSkyZip.Core'
28 Apr 2015 22:25:39,465 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-820:TargetedMS.ImportSkyZip.Output'
28 Apr 2015 22:25:39,466 DEBUG: Protocol import complete
28 Apr 2015 22:25:39,468 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-820:Mtb+ALF-SWATH%3A+Dilution+series+of+AQUA+peptides+used+for+anchor+protein+quantification'
28 Apr 2015 22:25:39,468 DEBUG: Experiment/Run group import complete
28 Apr 2015 22:25:39,496 DEBUG: Protocol action set import complete
28 Apr 2015 22:25:39,566 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-820:TargetedMS.ImportSkyZip'
28 Apr 2015 22:25:39,592 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-820:d29bffd9-7e34-1032-bcb9-3013bb9b053a'
28 Apr 2015 22:25:39,592 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-820:TargetedMS.ImportSkyZip.Core'
28 Apr 2015 22:25:39,595 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-820:TargetedMS.ImportSkyZip.Output'
28 Apr 2015 22:25:39,596 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-820:d29c0002-7e34-1032-bcb9-3013bb9b053a'
28 Apr 2015 22:25:39,598 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2015/Ludwig_Mtb_dilutions/@files/export/xar/experiments_and_runs.xar.exploded/Run1236/Run921/Anchor_proteins_dilution_series_Panorama_14_01_2015_2015-01-14_17-20-25.sky.zip into the system
28 Apr 2015 22:25:39,599 INFO : Starting import from Anchor_proteins_dilution_series_Panorama_14_01_2015_2015-01-14_17-20-25.sky.zip
28 Apr 2015 22:25:39,604 INFO : Starting to import Skyline document from Anchor_proteins_dilution_series_Panorama_14_01_2015_2015-01-14_17-20-25.sky.zip
28 Apr 2015 22:25:39,604 INFO : Expanding Mtb_SWATH_library_iRT.irtdb
28 Apr 2015 22:25:39,604 INFO : Expanding iProphet_P0-9973_iRT_cons.blib
28 Apr 2015 22:25:39,605 INFO : Expanding Anchor_proteins_dilution_series_Panorama_14_01_2015.skyd
28 Apr 2015 22:25:41,250 INFO : Expanding Anchor_proteins_dilution_series_Panorama_14_01_2015.sky.view
28 Apr 2015 22:25:41,251 INFO : Expanding Anchor_proteins_dilution_series_Panorama_14_01_2015.sky
28 Apr 2015 22:25:41,279 WARN : Input iRT database does not exist Mtb_SWATH_iRT.irtdb
28 Apr 2015 22:25:41,347 INFO : Inserting Rv3646c|topA
28 Apr 2015 22:25:41,543 INFO : Inserting Rv0041|leuS
28 Apr 2015 22:25:42,416 INFO : Inserting Rv0044c|Rv0044c
28 Apr 2015 22:25:42,873 INFO : Inserting Rv0234c|gabD1
28 Apr 2015 22:25:44,508 INFO : Inserting Rv0440|groEL2
28 Apr 2015 22:25:45,643 INFO : Inserting Rv0667|rpoB
28 Apr 2015 22:25:46,841 INFO : Inserting Rv0719|rplF
28 Apr 2015 22:25:47,692 INFO : Inserting Rv0927c|Rv0927c
28 Apr 2015 22:25:48,626 INFO : Inserting Rv1133c|metE
28 Apr 2015 22:25:50,856 INFO : Inserting Rv1294|thrA
28 Apr 2015 22:25:51,847 INFO : Inserting Rv1310|atpD
28 Apr 2015 22:25:53,281 INFO : Inserting Rv1331|Rv1331
28 Apr 2015 22:25:53,692 INFO : Inserting Rv1388|mihF
28 Apr 2015 22:25:54,803 INFO : Inserting Rv1475c|acn
28 Apr 2015 22:25:55,987 INFO : Inserting Rv1605|hisF
28 Apr 2015 22:25:57,011 INFO : Inserting Rv1630|rpsA
28 Apr 2015 22:25:57,950 INFO : Inserting Rv1837c|glcB
28 Apr 2015 22:25:59,010 INFO : Inserting Rv2129c|Rv2129c
28 Apr 2015 22:25:59,582 INFO : Inserting Rv2244|acpM
28 Apr 2015 22:26:00,627 INFO : Inserting Rv2589|gabT
28 Apr 2015 22:26:01,077 INFO : Inserting Rv2831|echA16
28 Apr 2015 22:26:01,630 INFO : Inserting Rv2928|tesA
28 Apr 2015 22:26:02,642 INFO : Inserting Rv3048c|nrdF2
28 Apr 2015 22:26:03,162 INFO : Inserting Rv3248c|sahH
28 Apr 2015 22:26:04,710 INFO : Inserting Rv3417c|groEL1
28 Apr 2015 22:26:05,986 INFO : Inserting Rv3418c|groES
28 Apr 2015 22:26:07,384 INFO : Inserting Rv3457c|rpoA
28 Apr 2015 22:26:09,151 INFO : Inserting Rv1329c|dinG
28 Apr 2015 22:26:09,943 INFO : Inserting Rv1773c|Rv1773c
28 Apr 2015 22:26:10,800 INFO : Inserting Rv3915|Rv3915
28 Apr 2015 22:26:11,269 INFO : Inserting iRTs
28 Apr 2015 22:26:12,728 INFO : Completed import of Skyline document from Anchor_proteins_dilution_series_Panorama_14_01_2015_2015-01-14_17-20-25.sky.zip
28 Apr 2015 22:26:12,736 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2015/Ludwig_Mtb_dilutions/@files/export/xar/experiments_and_runs.xar.exploded/Run1236/Run921/Anchor_proteins_dilution_series_Panorama_14_01_2015_2015-01-14_17-20-25.sky.zip into the system
28 Apr 2015 22:26:12,736 INFO : Done importing xar
28 Apr 2015 22:26:12,744 INFO : Loading pages and webpart properties
28 Apr 2015 22:26:12,806 INFO : Done importing pages and webpart properties
28 Apr 2015 22:26:12,807 INFO : 
28 Apr 2015 22:26:12,807 INFO : Experiment import completed successfully.
28 Apr 2015 22:26:12,807 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentImportTask'
28 Apr 2015 22:26:12,826 INFO : Starting to run task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask' at location 'webserver'
28 Apr 2015 22:26:12,826 INFO : 
28 Apr 2015 22:26:12,826 INFO : Finishing up experiment copy.
28 Apr 2015 22:26:12,829 INFO : Creating a new TargetedMS experiment entry in targetedms.ExperimentAnnotations.
28 Apr 2015 22:26:12,836 INFO : Updating access URL to point to the new copy of the data.
28 Apr 2015 22:26:12,880 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask'