14 Jun 2015 23:42:14,626 INFO : Copying experiment "Ariadne’s thread: a robust software solution leading to automated absolute and relative quantification of SRM data" from folder /Wollscheid/Ariadne to /Panorama Public/2015/Goetze - Ariadne

14 Jun 2015 23:42:14,626 INFO : =======================================

14 Jun 2015 23:42:14,810 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentExportTask' at location 'webserver'

14 Jun 2015 23:42:14,811 INFO : 

14 Jun 2015 23:42:14,812 INFO : Exporting experiment.

14 Jun 2015 23:42:25,748 INFO : 

14 Jun 2015 23:42:25,748 INFO : Experiment export completed successfully.

14 Jun 2015 23:42:25,749 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentExportTask'

14 Jun 2015 23:42:25,790 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentImportTask' at location 'webserver'

14 Jun 2015 23:42:25,790 INFO : 

14 Jun 2015 23:42:25,790 INFO : Importing experiment.

14 Jun 2015 23:42:25,843 INFO : Loading folder properties (folder type, settings and active modules)

14 Jun 2015 23:42:26,064 INFO : Done importing folder properties (folder type, settings and active modules)

14 Jun 2015 23:42:26,072 INFO : Done importing container specific module properties

14 Jun 2015 23:42:26,123 INFO : Loading wikis

14 Jun 2015 23:42:26,143 INFO : 0 wikis imported

14 Jun 2015 23:42:26,143 INFO : Done importing wikis

14 Jun 2015 23:42:26,149 INFO : Loading xar

14 Jun 2015 23:42:27,882 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-1055:TargetedMS.ImportSkyZip'

14 Jun 2015 23:42:27,890 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-1055:TargetedMS.ImportSkyZip.Core'

14 Jun 2015 23:42:27,898 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-1055:TargetedMS.ImportSkyZip.Output'

14 Jun 2015 23:42:27,898 DEBUG: Protocol import complete

14 Jun 2015 23:42:27,967 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-1055:Ariadne%E2%80%99s+thread%3A+a+robust+software+solution+leading+to+automated+absolute+and+relative+quantification+of+SRM+data'

14 Jun 2015 23:42:27,967 DEBUG: Experiment/Run group import complete

14 Jun 2015 23:42:28,069 DEBUG: Protocol action set import complete

14 Jun 2015 23:42:28,288 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-1055:TargetedMS.ImportSkyZip'

14 Jun 2015 23:42:28,463 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-1055:941c21b4-f307-1032-ae01-3013bb9b89cd'

14 Jun 2015 23:42:28,463 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-1055:TargetedMS.ImportSkyZip.Core'

14 Jun 2015 23:42:28,512 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-1055:TargetedMS.ImportSkyZip.Output'

14 Jun 2015 23:42:28,514 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-1055:941c22e3-f307-1032-ae01-3013bb9b89cd'

14 Jun 2015 23:42:28,542 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-1055:TargetedMS.ImportSkyZip'

14 Jun 2015 23:42:28,560 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-1055:941c1ecc-f307-1032-ae01-3013bb9b89cd'

14 Jun 2015 23:42:28,560 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-1055:TargetedMS.ImportSkyZip.Core'

14 Jun 2015 23:42:28,567 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-1055:TargetedMS.ImportSkyZip.Output'

14 Jun 2015 23:42:28,569 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-1055:941c1f36-f307-1032-ae01-3013bb9b89cd'

14 Jun 2015 23:42:28,634 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-1055:TargetedMS.ImportSkyZip'

14 Jun 2015 23:42:28,652 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-1055:941c1a5f-f307-1032-ae01-3013bb9b89cd'

14 Jun 2015 23:42:28,652 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-1055:TargetedMS.ImportSkyZip.Core'

14 Jun 2015 23:42:28,659 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-1055:TargetedMS.ImportSkyZip.Output'

14 Jun 2015 23:42:28,660 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-1055:941c1bb0-f307-1032-ae01-3013bb9b89cd'

14 Jun 2015 23:42:28,663 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2015/Goetze%20-%20Ariadne/@files/export/xar/experiments_and_runs.xar.exploded/Run1887/noisy_2015-06-12_10-43-02.sky.zip into the system

14 Jun 2015 23:42:28,679 INFO : Starting import from noisy_2015-06-12_10-43-02.sky.zip

14 Jun 2015 23:42:28,710 INFO : Starting to import Skyline document from noisy_2015-06-12_10-43-02.sky.zip

14 Jun 2015 23:42:28,711 INFO : Expanding Sara-iRT-C18.irtdb

14 Jun 2015 23:42:28,711 INFO : Expanding Sara part2-assay.blib

14 Jun 2015 23:42:28,712 INFO : Expanding Sara part1-assay.blib

14 Jun 2015 23:42:28,713 INFO : Expanding noisy.skyd

14 Jun 2015 23:42:29,577 INFO : Expanding noisy.sky.view

14 Jun 2015 23:42:29,578 INFO : Expanding noisy.sky

14 Jun 2015 23:42:29,650 WARN : The version of this Skyline document is 3.1. This is newer than the highest supported version 2.62

14 Jun 2015 23:42:29,664 WARN : Input iRT database does not exist Sara (iRT-kit).irtdb

14 Jun 2015 23:42:30,495 INFO : Inserting 14_3_3

14 Jun 2015 23:42:33,485 INFO : Inserting APC

14 Jun 2015 23:42:34,912 INFO : Inserting Apc2

14 Jun 2015 23:42:36,296 INFO : Inserting ARM

14 Jun 2015 23:42:37,827 INFO : Inserting arrow

14 Jun 2015 23:42:38,705 INFO : Inserting Axn

14 Jun 2015 23:42:40,012 INFO : Inserting BAP55

14 Jun 2015 23:42:40,693 INFO : Inserting BAP60

14 Jun 2015 23:42:42,051 INFO : Inserting BCL9

14 Jun 2015 23:42:42,907 INFO : Inserting brm

14 Jun 2015 23:42:44,385 INFO : Inserting CBP

14 Jun 2015 23:42:45,232 INFO : Inserting cdc2

14 Jun 2015 23:42:45,838 INFO : Inserting CG1621

14 Jun 2015 23:42:46,490 INFO : Inserting CKIalpha

14 Jun 2015 23:42:47,223 INFO : Inserting CTBP

14 Jun 2015 23:42:47,952 INFO : Inserting CTNA

14 Jun 2015 23:42:48,639 INFO : Inserting dalao

14 Jun 2015 23:42:51,104 INFO : Inserting dsh

14 Jun 2015 23:42:51,882 INFO : Inserting dsh1

14 Jun 2015 23:42:52,544 INFO : Inserting fz

14 Jun 2015 23:42:53,901 INFO : Inserting gro

14 Jun 2015 23:42:55,620 INFO : Inserting hyx

14 Jun 2015 23:42:56,261 INFO : Inserting ISWI

14 Jun 2015 23:42:56,931 INFO : Inserting kto

14 Jun 2015 23:42:57,512 INFO : Inserting mor

14 Jun 2015 23:42:59,287 INFO : Inserting Nurf38

14 Jun 2015 23:43:00,025 INFO : Inserting osa

14 Jun 2015 23:43:01,362 INFO : Inserting PAN

14 Jun 2015 23:43:02,725 INFO : Inserting pont

14 Jun 2015 23:43:03,276 INFO : Inserting rept

14 Jun 2015 23:43:03,892 INFO : Inserting sgg

14 Jun 2015 23:43:05,706 INFO : Inserting TBP

14 Jun 2015 23:43:06,297 INFO : Inserting RT-Kit-WR

14 Jun 2015 23:43:15,298 INFO : Completed import of Skyline document from noisy_2015-06-12_10-43-02.sky.zip

14 Jun 2015 23:43:15,306 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2015/Goetze%20-%20Ariadne/@files/export/xar/experiments_and_runs.xar.exploded/Run1887/noisy_2015-06-12_10-43-02.sky.zip into the system

14 Jun 2015 23:43:15,306 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2015/Goetze%20-%20Ariadne/@files/export/xar/experiments_and_runs.xar.exploded/Run1886/complexBackground_2015-06-12_10-37-47.sky.zip into the system

14 Jun 2015 23:43:15,310 INFO : Starting import from complexBackground_2015-06-12_10-37-47.sky.zip

14 Jun 2015 23:43:15,317 INFO : Starting to import Skyline document from complexBackground_2015-06-12_10-37-47.sky.zip

14 Jun 2015 23:43:15,318 INFO : Expanding Sara-iRT-C18.irtdb

14 Jun 2015 23:43:15,319 INFO : Expanding Sara part2-assay.blib

14 Jun 2015 23:43:15,319 INFO : Expanding Sara part1-assay.blib

14 Jun 2015 23:43:15,320 INFO : Expanding complexBackground.skyd

14 Jun 2015 23:43:15,456 INFO : Expanding complexBackground.sky.view

14 Jun 2015 23:43:15,457 INFO : Expanding complexBackground.sky

14 Jun 2015 23:43:15,481 WARN : The version of this Skyline document is 3.1. This is newer than the highest supported version 2.62

14 Jun 2015 23:43:15,488 WARN : Input iRT database does not exist Sara (iRT-kit).irtdb

14 Jun 2015 23:43:15,645 INFO : Inserting 14_3_3

14 Jun 2015 23:43:16,024 INFO : Inserting APC

14 Jun 2015 23:43:16,394 INFO : Inserting Apc2

14 Jun 2015 23:43:16,723 INFO : Inserting ARM

14 Jun 2015 23:43:17,082 INFO : Inserting arrow

14 Jun 2015 23:43:17,263 INFO : Inserting Axn

14 Jun 2015 23:43:17,639 INFO : Inserting BAP55

14 Jun 2015 23:43:17,820 INFO : Inserting BAP60

14 Jun 2015 23:43:18,185 INFO : Inserting BCL9

14 Jun 2015 23:43:18,348 INFO : Inserting brm

14 Jun 2015 23:43:18,671 INFO : Inserting CBP

14 Jun 2015 23:43:18,836 INFO : Inserting cdc2

14 Jun 2015 23:43:19,001 INFO : Inserting CG1621

14 Jun 2015 23:43:19,287 INFO : Inserting CKIalpha

14 Jun 2015 23:43:19,509 INFO : Inserting CTBP

14 Jun 2015 23:43:19,722 INFO : Inserting CTNA

14 Jun 2015 23:43:19,922 INFO : Inserting dalao

14 Jun 2015 23:43:20,154 INFO : Inserting dsh

14 Jun 2015 23:43:20,356 INFO : Inserting dsh1

14 Jun 2015 23:43:20,541 INFO : Inserting fz

14 Jun 2015 23:43:20,727 INFO : Inserting gro

14 Jun 2015 23:43:21,078 INFO : Inserting hyx

14 Jun 2015 23:43:21,259 INFO : Inserting ISWI

14 Jun 2015 23:43:21,440 INFO : Inserting kto

14 Jun 2015 23:43:21,622 INFO : Inserting mor

14 Jun 2015 23:43:22,026 INFO : Inserting Nurf38

14 Jun 2015 23:43:22,207 INFO : Inserting osa

14 Jun 2015 23:43:22,568 INFO : Inserting PAN

14 Jun 2015 23:43:22,968 INFO : Inserting pont

14 Jun 2015 23:43:23,183 INFO : Inserting rept

14 Jun 2015 23:43:23,458 INFO : Inserting sgg

14 Jun 2015 23:43:23,661 INFO : Inserting TBP

14 Jun 2015 23:43:23,884 INFO : Inserting RT-Kit-WR

14 Jun 2015 23:43:26,332 INFO : Completed import of Skyline document from complexBackground_2015-06-12_10-37-47.sky.zip

14 Jun 2015 23:43:26,341 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2015/Goetze%20-%20Ariadne/@files/export/xar/experiments_and_runs.xar.exploded/Run1886/complexBackground_2015-06-12_10-37-47.sky.zip into the system

14 Jun 2015 23:43:26,341 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2015/Goetze%20-%20Ariadne/@files/export/xar/experiments_and_runs.xar.exploded/Run1885/smoothCalibration_2015-06-12_10-20-11.sky.zip into the system

14 Jun 2015 23:43:26,345 INFO : Starting import from smoothCalibration_2015-06-12_10-20-11.sky.zip

14 Jun 2015 23:43:26,352 INFO : Starting to import Skyline document from smoothCalibration_2015-06-12_10-20-11.sky.zip

14 Jun 2015 23:43:26,353 INFO : Expanding Sara-iRT-C18.irtdb

14 Jun 2015 23:43:26,353 INFO : Expanding Sara part2-assay.blib

14 Jun 2015 23:43:26,354 INFO : Expanding Sara part1-assay.blib

14 Jun 2015 23:43:26,355 INFO : Expanding smoothCalibration.skyd

14 Jun 2015 23:43:26,926 INFO : Expanding smoothCalibration.sky.view

14 Jun 2015 23:43:26,927 INFO : Expanding smoothCalibration.sky

14 Jun 2015 23:43:27,004 WARN : The version of this Skyline document is 3.1. This is newer than the highest supported version 2.62

14 Jun 2015 23:43:27,020 WARN : Input iRT database does not exist Sara (iRT-kit).irtdb

14 Jun 2015 23:43:27,229 INFO : Inserting 14_3_3

14 Jun 2015 23:43:28,333 INFO : Inserting APC

14 Jun 2015 23:43:29,668 INFO : Inserting Apc2

14 Jun 2015 23:43:30,872 INFO : Inserting ARM

14 Jun 2015 23:43:32,046 INFO : Inserting arrow

14 Jun 2015 23:43:32,616 INFO : Inserting Axn

14 Jun 2015 23:43:34,836 INFO : Inserting BAP55

14 Jun 2015 23:43:35,411 INFO : Inserting BAP60

14 Jun 2015 23:43:36,634 INFO : Inserting BCL9

14 Jun 2015 23:43:37,232 INFO : Inserting brm

14 Jun 2015 23:43:38,360 INFO : Inserting CBP

14 Jun 2015 23:43:39,094 INFO : Inserting cdc2

14 Jun 2015 23:43:39,744 INFO : Inserting CG1621

14 Jun 2015 23:43:40,370 INFO : Inserting CKIalpha

14 Jun 2015 23:43:40,996 INFO : Inserting CTBP

14 Jun 2015 23:43:41,609 INFO : Inserting CTNA

14 Jun 2015 23:43:42,212 INFO : Inserting dalao

14 Jun 2015 23:43:42,834 INFO : Inserting dsh

14 Jun 2015 23:43:43,436 INFO : Inserting dsh1

14 Jun 2015 23:43:44,058 INFO : Inserting fz

14 Jun 2015 23:43:44,699 INFO : Inserting gro

14 Jun 2015 23:43:46,056 INFO : Inserting hyx

14 Jun 2015 23:43:46,714 INFO : Inserting ISWI

14 Jun 2015 23:43:47,372 INFO : Inserting kto

14 Jun 2015 23:43:47,983 INFO : Inserting mor

14 Jun 2015 23:43:49,189 INFO : Inserting Nurf38

14 Jun 2015 23:43:49,766 INFO : Inserting osa

14 Jun 2015 23:43:51,120 INFO : Inserting PAN

14 Jun 2015 23:43:52,248 INFO : Inserting pont

14 Jun 2015 23:43:52,829 INFO : Inserting rept

14 Jun 2015 23:43:53,404 INFO : Inserting sgg

14 Jun 2015 23:43:53,978 INFO : Inserting TBP

14 Jun 2015 23:43:54,530 INFO : Inserting RT-Kit-WR

14 Jun 2015 23:44:03,098 INFO : Completed import of Skyline document from smoothCalibration_2015-06-12_10-20-11.sky.zip

14 Jun 2015 23:44:03,106 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2015/Goetze%20-%20Ariadne/@files/export/xar/experiments_and_runs.xar.exploded/Run1885/smoothCalibration_2015-06-12_10-20-11.sky.zip into the system

14 Jun 2015 23:44:03,106 INFO : Done importing xar

14 Jun 2015 23:44:03,113 INFO : Loading custom views

14 Jun 2015 23:44:03,163 INFO : 1 custom view imported

14 Jun 2015 23:44:03,163 INFO : Done importing custom views

14 Jun 2015 23:44:03,190 INFO : Loading pages and webpart properties

14 Jun 2015 23:44:03,250 INFO : Done importing pages and webpart properties

14 Jun 2015 23:44:03,250 INFO : 

14 Jun 2015 23:44:03,251 INFO : Experiment import completed successfully.

14 Jun 2015 23:44:03,251 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentImportTask'

14 Jun 2015 23:44:03,273 INFO : Starting to run task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask' at location 'webserver'

14 Jun 2015 23:44:03,273 INFO : 

14 Jun 2015 23:44:03,273 INFO : Finishing up experiment copy.

14 Jun 2015 23:44:03,277 INFO : Creating a new TargetedMS experiment entry in targetedms.ExperimentAnnotations.

14 Jun 2015 23:44:03,303 INFO : Updating access URL to point to the new copy of the data.

14 Jun 2015 23:44:03,421 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask'