06 Aug 2025 10:38:53,096 DEBUG: Resetting Job ID: 00c5c79a-551a-103e-8e6e-1cc91aa98000
06 Aug 2025 10:38:53,523 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'
06 Aug 2025 10:38:53,524 INFO : Starting to import Skyline document from METRIC_Eclipse_PSB_All_QCs_2025-08-06_13-38-50.sky.zip
06 Aug 2025 10:38:53,536 INFO : Expanding METRIC_Eclipse_PSB_All_QCs.skyd
06 Aug 2025 10:38:53,769 INFO : Expanding METRIC_Eclipse_PSB_All_QCs.sky
06 Aug 2025 10:38:53,773 INFO : Reading Skyline file, METRIC_Eclipse_PSB_All_QCs.sky, to determine if the TransitionChromInfos in the document should be stored...
06 Aug 2025 10:38:53,778 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
06 Aug 2025 10:38:53,778 WARN : The version of this Skyline document is 25.1. This is newer than the highest supported version 23.1
06 Aug 2025 10:38:53,780 INFO : 2% Done
06 Aug 2025 10:38:53,780 INFO : Copying SKYD to temp directory for import purposes
06 Aug 2025 10:38:54,047 INFO : Copying complete
06 Aug 2025 10:38:54,048 DEBUG: Starting to load chromatogram headers
06 Aug 2025 10:38:54,048 DEBUG: Done loading chromatogram headers
06 Aug 2025 10:38:54,159 INFO : Inserting gi|162648|gb|AAA51411.1|
06 Aug 2025 10:38:54,164 INFO : 10% Done
06 Aug 2025 10:38:54,194 INFO : 19% Done
06 Aug 2025 10:38:54,228 INFO : 26% Done
06 Aug 2025 10:38:54,258 INFO : 37% Done
06 Aug 2025 10:38:54,296 INFO : 49% Done
06 Aug 2025 10:38:54,335 INFO : 60% Done
06 Aug 2025 10:38:54,375 DEBUG: Total peptides inserted: 6
06 Aug 2025 10:38:54,375 INFO : Done parsing Skyline document.
06 Aug 2025 10:38:54,431 INFO : No group comparisons found.
06 Aug 2025 10:38:54,431 INFO : Calculating calibration curves
06 Aug 2025 10:38:54,431 DEBUG: Calculating calibration curve for gi|162648|gb|AAA51411.1|, 1 of 1
06 Aug 2025 10:38:54,498 INFO : 68% Done
06 Aug 2025 10:38:54,499 INFO : Done calculating calibration curves.
06 Aug 2025 10:38:54,500 INFO : Updating previously imported data for 33 old sample files.
06 Aug 2025 10:38:54,500 DEBUG: Found data for the following old sample files in the QC folder:
06 Aug 2025 10:38:54,500 DEBUG: D:\QC\QC_BSA\20250603_BSA-QC-01.raw
06 Aug 2025 10:38:54,500 DEBUG: D:\QC\QC_BSA\20250214_BSA-QC_004.raw
06 Aug 2025 10:38:54,500 DEBUG: D:\QC\QC_BSA\20250606_BSA-QC-04.raw
06 Aug 2025 10:38:54,500 DEBUG: D:\QC\QC_BSA\20220410_QC_BSA-001.raw
06 Aug 2025 10:38:54,500 DEBUG: D:\QC\QC_BSA\20240126_QC_BSA-003_20250524065009.raw
06 Aug 2025 10:38:54,500 DEBUG: D:\QC\QC_BSA\20250214_BSA-QC_005.raw
06 Aug 2025 10:38:54,500 DEBUG: D:\QC\QC_BSA\20241021-Kritika-AmylinLiverCD11c-DDA_004.raw
06 Aug 2025 10:38:54,500 DEBUG: D:\QC\QC_BSA\20250606_BSA-QC-03.raw
06 Aug 2025 10:38:54,500 DEBUG: D:\QC\QC_BSA\20250625-QC-BSA-1.raw
06 Aug 2025 10:38:54,500 DEBUG: D:\QC\QC_BSA\20250624-QC-BSA-1.raw
06 Aug 2025 10:38:54,500 DEBUG: D:\QC\QC_BSA\20241021_BSA-QC-01.raw
06 Aug 2025 10:38:54,500 DEBUG: D:\QC\QC_BSA\20250214_BSA-QC_006.raw
06 Aug 2025 10:38:54,500 DEBUG: D:\QC\QC_BSA\20250410_QC_BSA-002.raw
06 Aug 2025 10:38:54,500 DEBUG: D:\QC\QC_BSA\20241021_BSA-QC-05.raw
06 Aug 2025 10:38:54,500 DEBUG: D:\QC\QC_BSA\20241021_BSA-QC-01_20241021152050.raw
06 Aug 2025 10:38:54,500 DEBUG: D:\QC\QC_BSA\20240126_QC_BSA-003_20250523094527.raw
06 Aug 2025 10:38:54,500 DEBUG: D:\QC\QC_BSA\20250520_QC_BSA-001_20250520195858.raw
06 Aug 2025 10:38:54,500 DEBUG: D:\QC\QC_BSA\20250214_BSA-QC_002.raw
06 Aug 2025 10:38:54,500 DEBUG: D:\QC\QC_BSA\20250606_BSA-QC-02.raw
06 Aug 2025 10:38:54,500 DEBUG: D:\QC\QC_BSA\20250520_QC_BSA-001.raw
06 Aug 2025 10:38:54,500 DEBUG: D:\QC\QC_BSA\20250520_QC_BSA-002.raw
06 Aug 2025 10:38:54,500 DEBUG: D:\QC\QC_BSA\20250214_BSA-QC_001.raw
06 Aug 2025 10:38:54,500 DEBUG: D:\QC\QC_BSA\20250624-QC-BSA-2.raw
06 Aug 2025 10:38:54,500 DEBUG: D:\QC\QC_BSA\20241021-Blank_08.raw
06 Aug 2025 10:38:54,501 DEBUG: D:\QC\QC_BSA\20250603_BSA-QC-03.raw
06 Aug 2025 10:38:54,501 DEBUG: D:\QC\QC_BSA\20241021_BSA-QC-02.raw
06 Aug 2025 10:38:54,501 DEBUG: D:\QC\QC_BSA\20241021_BSA-QC-04.raw
06 Aug 2025 10:38:54,501 DEBUG: D:\QC\QC_BSA\20250410_QC_BSA-002_20250414080941.raw
06 Aug 2025 10:38:54,501 DEBUG: D:\QC\QC_BSA\20250606_BSA-QC-01.raw
06 Aug 2025 10:38:54,501 DEBUG: D:\QC\QC_BSA\20250214_BSA-QC_003.raw
06 Aug 2025 10:38:54,501 DEBUG: D:\QC\QC_BSA\20250603_BSA-QC-02.raw
06 Aug 2025 10:38:54,501 DEBUG: D:\QC\QC_BSA\20250624-QC-BSA-2_20250625111517.raw
06 Aug 2025 10:38:54,501 DEBUG: D:\QC\QC_BSA\20241021_BSA-QC-03.raw
06 Aug 2025 10:38:58,165 INFO : 98% Done
06 Aug 2025 10:38:58,165 INFO : Done updating previously imported sample file data.
06 Aug 2025 10:38:58,771 INFO : All the related sampleFiles for /data/labkey/files/NCSU - METRIC/METRIC Internal/METRIC Proteomics QC/Eclipse_PSB/@files/METRIC_Eclipse_PSB_All_QCs_2025-07-24_14-39-02.sky.zip have been updated with newer data.
06 Aug 2025 10:38:58,771 INFO : Deleting /data/labkey/files/NCSU - METRIC/METRIC Internal/METRIC Proteomics QC/Eclipse_PSB/@files/METRIC_Eclipse_PSB_All_QCs_2025-07-24_14-39-02.sky.zip
06 Aug 2025 10:38:58,771 INFO : Deleting directory /data/labkey/files/NCSU - METRIC/METRIC Internal/METRIC Proteomics QC/Eclipse_PSB/@files/METRIC_Eclipse_PSB_All_QCs_2025-07-24_14-39-02
06 Aug 2025 10:38:58,771 INFO : Creating and populating temp tables for Proportion values
06 Aug 2025 10:38:58,775 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
06 Aug 2025 10:38:58,782 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
06 Aug 2025 10:38:58,786 INFO : Cleaning up temp tables
06 Aug 2025 10:38:59,029 INFO : Deleted temp copy of SKYD file
06 Aug 2025 10:38:59,029 INFO : Completed import of Skyline document from METRIC_Eclipse_PSB_All_QCs_2025-08-06_13-38-50.sky.zip
06 Aug 2025 10:38:59,031 INFO : 100% Done
06 Aug 2025 10:38:59,272 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'