26 Mar 2024 13:54:04,997 DEBUG: Resetting Job ID: 56dcf166-cde0-103c-8ae5-fea6ddf5ffa2

26 Mar 2024 13:54:05,021 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

26 Mar 2024 13:54:05,022 INFO : Starting to import Skyline document from 20210630_Auto_QC_800_CON_Mix1_2024-03-26_16-53-51.sky.zip

26 Mar 2024 13:54:05,023 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.skyd

26 Mar 2024 13:54:05,971 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.sky

26 Mar 2024 13:54:05,987 INFO : 2% Done

26 Mar 2024 13:54:06,355 DEBUG: Starting to load chromatogram headers

26 Mar 2024 13:54:06,365 DEBUG: Done loading chromatogram headers

26 Mar 2024 13:54:08,412 INFO : Inserting Precursors_Mix_1

26 Mar 2024 13:54:08,419 INFO : 4% Done

26 Mar 2024 13:54:08,502 INFO : 7% Done

26 Mar 2024 13:54:08,568 INFO : 10% Done

26 Mar 2024 13:54:08,627 INFO : 12% Done

26 Mar 2024 13:54:08,684 INFO : 14% Done

26 Mar 2024 13:54:08,742 INFO : 17% Done

26 Mar 2024 13:54:08,801 INFO : 20% Done

26 Mar 2024 13:54:08,857 INFO : 22% Done

26 Mar 2024 13:54:08,916 INFO : 25% Done

26 Mar 2024 13:54:08,974 INFO : 27% Done

26 Mar 2024 13:54:09,036 INFO : 29% Done

26 Mar 2024 13:54:09,094 INFO : 32% Done

26 Mar 2024 13:54:09,157 INFO : 35% Done

26 Mar 2024 13:54:09,217 INFO : 37% Done

26 Mar 2024 13:54:09,276 INFO : 40% Done

26 Mar 2024 13:54:09,335 INFO : 43% Done

26 Mar 2024 13:54:09,395 INFO : 45% Done

26 Mar 2024 13:54:09,455 INFO : 47% Done

26 Mar 2024 13:54:09,514 INFO : 50% Done

26 Mar 2024 13:54:09,575 INFO : 53% Done

26 Mar 2024 13:54:09,634 INFO : 55% Done

26 Mar 2024 13:54:09,694 INFO : 58% Done

26 Mar 2024 13:54:09,756 INFO : 60% Done

26 Mar 2024 13:54:09,809 DEBUG: Total molecules inserted: 23

26 Mar 2024 13:54:09,810 INFO : Done parsing Skyline document.

26 Mar 2024 13:54:09,869 INFO : No group comparisons found.

26 Mar 2024 13:54:09,870 INFO : Calculating calibration curves

26 Mar 2024 13:54:09,870 DEBUG: Calculating calibration curve for Precursors_Mix_1, 1 of 1

26 Mar 2024 13:54:10,122 INFO : 68% Done

26 Mar 2024 13:54:10,126 INFO : Done calculating calibration curves.

26 Mar 2024 13:54:10,127 INFO : Updating previously imported data for 86 old sample files.

26 Mar 2024 13:54:10,127 DEBUG: Found data for the following old sample files in the QC folder:

26 Mar 2024 13:54:10,127 DEBUG:   D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-7.raw

26 Mar 2024 13:54:10,127 DEBUG:   D:\AutoQC\raw files\20210630_OLD_CON.raw

26 Mar 2024 13:54:10,127 DEBUG:   D:\AutoQC\raw files\20210629_Curve_800CON_04.raw

26 Mar 2024 13:54:10,127 DEBUG:   D:\AutoQC\raw files\20210210_large_800CON_inj8.raw

26 Mar 2024 13:54:10,127 DEBUG:   D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-9.raw

26 Mar 2024 13:54:10,127 DEBUG:   D:\AutoQC\raw files\04_07_23_Orbitrap_240_800_CON_PFAS-2.raw

26 Mar 2024 13:54:10,127 DEBUG:   D:\AutoQC\raw files\20210629_Curve_800CON_03.raw

26 Mar 2024 13:54:10,127 DEBUG:   D:\AutoQC\raw files\20210210_large_800CON_inj9.raw

26 Mar 2024 13:54:10,127 DEBUG:   D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-8.raw

26 Mar 2024 13:54:10,127 DEBUG:   D:\AutoQC\raw files\05_26_22_AutoQC_800ngL.raw

26 Mar 2024 13:54:10,127 DEBUG:   D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-6.raw

26 Mar 2024 13:54:10,127 DEBUG:   D:\AutoQC\raw files\20210611-Water_Samples_800CON.raw

26 Mar 2024 13:54:10,127 DEBUG:   D:\AutoQC\raw files\20210630_800QC_A.raw

26 Mar 2024 13:54:10,127 DEBUG:   D:\AutoQC\raw files\20210825_800CON_01.raw

26 Mar 2024 13:54:10,127 DEBUG:   D:\AutoQC\raw files\20210629_Curve_800CON_02.raw

26 Mar 2024 13:54:10,127 DEBUG:   D:\AutoQC\raw files\11_03_23_Orbitrap_240_800_CON_PFAS-1.raw

26 Mar 2024 13:54:10,127 DEBUG:   D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-9.raw

26 Mar 2024 13:54:10,128 DEBUG:   D:\AutoQC\raw files\04_07_23_Orbitrap_240_800_CON_PFAS-1.raw

26 Mar 2024 13:54:10,128 DEBUG:   D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-5.raw

26 Mar 2024 13:54:10,128 DEBUG:   D:\AutoQC\raw files\20210330_800CON.raw

26 Mar 2024 13:54:10,129 DEBUG:   D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-7.raw

26 Mar 2024 13:54:10,129 DEBUG:   D:\AutoQC\raw files\20210903_800CON.raw

26 Mar 2024 13:54:10,129 DEBUG:   D:\AutoQC\raw files\20210825_800CON_07.raw

26 Mar 2024 13:54:10,129 DEBUG:   D:\AutoQC\raw files\20210629_Curve_800CON.raw

26 Mar 2024 13:54:10,129 DEBUG:   D:\AutoQC\raw files\20210901_800CON_small.raw

26 Mar 2024 13:54:10,129 DEBUG:   D:\AutoQC\raw files\20210629_Curve_800CON_01.raw

26 Mar 2024 13:54:10,129 DEBUG:   D:\AutoQC\raw files\20210611-Water_Samples_800CON_20210614161228.raw

26 Mar 2024 13:54:10,129 DEBUG:   D:\AutoQC\raw files\02_17_23_Orbitrap_240_800_CON_PFAS-1.raw

26 Mar 2024 13:54:10,129 DEBUG:   D:\AutoQC\raw files\20210506_CON_02.raw

26 Mar 2024 13:54:10,129 DEBUG:   D:\AutoQC\raw files\20210506_CON_08.raw

26 Mar 2024 13:54:10,129 DEBUG:   D:\AutoQC\raw files\20210323_800CON.raw

26 Mar 2024 13:54:10,129 DEBUG:   D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-10.raw

26 Mar 2024 13:54:10,129 DEBUG:   D:\AutoQC\raw files\20210210_large_800CON_inj5.raw

26 Mar 2024 13:54:10,129 DEBUG:   D:\AutoQC\raw files\20210210_large_800CON_inj7.raw

26 Mar 2024 13:54:10,129 DEBUG:   D:\AutoQC\raw files\20210825_800CON_06.raw

26 Mar 2024 13:54:10,129 DEBUG:   D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-6.raw

26 Mar 2024 13:54:10,129 DEBUG:   D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-8.raw

26 Mar 2024 13:54:10,129 DEBUG:   D:\AutoQC\raw files\20210506_CON_01.raw

26 Mar 2024 13:54:10,129 DEBUG:   D:\AutoQC\raw files\20220201_AutoQC-2.raw

26 Mar 2024 13:54:10,129 DEBUG:   D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-5.raw

26 Mar 2024 13:54:10,129 DEBUG:   D:\AutoQC\raw files\20210210_large_800CON_inj6.raw

26 Mar 2024 13:54:10,129 DEBUG:   D:\AutoQC\raw files\20210506_CON_09.raw

26 Mar 2024 13:54:10,129 DEBUG:   D:\AutoQC\raw files\09_27_22_Orbitrap_240_800_CON_PFAS-2.raw

26 Mar 2024 13:54:10,129 DEBUG:   D:\AutoQC\raw files\20210506_CON_05.raw

26 Mar 2024 13:54:10,129 DEBUG:   D:\AutoQC\raw files\20210506_800CON_A.raw

26 Mar 2024 13:54:10,129 DEBUG:   D:\AutoQC\raw files\04_22_22_AutoQC_800ngL.raw

26 Mar 2024 13:54:10,129 DEBUG:   D:\AutoQC\raw files\20210825_800CON_04.raw

26 Mar 2024 13:54:10,129 DEBUG:   D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-4.raw

26 Mar 2024 13:54:10,129 DEBUG:   D:\AutoQC\raw files\20210210_large_800CON_inj3.raw

26 Mar 2024 13:54:10,129 DEBUG:   D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-2.raw

26 Mar 2024 13:54:10,129 DEBUG:   D:\AutoQC\raw files\20220201_AutoQC-3.raw

26 Mar 2024 13:54:10,129 DEBUG:   D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-1.raw

26 Mar 2024 13:54:10,129 DEBUG:   D:\AutoQC\raw files\20210506_CON_12.raw

26 Mar 2024 13:54:10,129 DEBUG:   D:\AutoQC\raw files\20210506_CON_06.raw

26 Mar 2024 13:54:10,129 DEBUG:   D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON_A.raw

26 Mar 2024 13:54:10,130 DEBUG:   D:\AutoQC\raw files\09_27_22_Orbitrap_240_800_CON_PFAS-1.raw

26 Mar 2024 13:54:10,130 DEBUG:   D:\AutoQC\raw files\20210506_CON_03.raw

26 Mar 2024 13:54:10,130 DEBUG:   D:\AutoQC\raw files\11_01_23_Orbitrap_240_800_CON_PFAS-1.raw

26 Mar 2024 13:54:10,130 DEBUG:   D:\AutoQC\raw files\20210825_800CON_05.raw

26 Mar 2024 13:54:10,130 DEBUG:   D:\AutoQC\raw files\03_25_24_Orbitrap_240_800_CON_PFAS-2.raw

26 Mar 2024 13:54:10,130 DEBUG:   D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-3.raw

26 Mar 2024 13:54:10,130 DEBUG:   D:\AutoQC\raw files\04_22_22_Orbitrap 240 800 CON PFAS.raw

26 Mar 2024 13:54:10,130 DEBUG:   D:\AutoQC\raw files\20210506_CON_07.raw

26 Mar 2024 13:54:10,130 DEBUG:   D:\AutoQC\raw files\20210210_large_800CON_inj4.raw

26 Mar 2024 13:54:10,130 DEBUG:   D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON.raw

26 Mar 2024 13:54:10,130 DEBUG:   D:\AutoQC\raw files\04_11_23_Orbitrap_240_800_CON_PFAS-1.raw

26 Mar 2024 13:54:10,130 DEBUG:   D:\AutoQC\raw files\20210210_large_800CON_inj1.raw

26 Mar 2024 13:54:10,130 DEBUG:   D:\AutoQC\raw files\20210506_CON_11.raw

26 Mar 2024 13:54:10,130 DEBUG:   D:\AutoQC\raw files\03_04_22_Orbitrap_240_800_CON_PFAS.raw

26 Mar 2024 13:54:10,130 DEBUG:   D:\AutoQC\raw files\20210825_800CON_02.raw

26 Mar 2024 13:54:10,130 DEBUG:   D:\AutoQC\raw files\09_19_22_Orbitrap_240_800_CON_PFAS-2.raw

26 Mar 2024 13:54:10,130 DEBUG:   D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-4.raw

26 Mar 2024 13:54:10,130 DEBUG:   D:\AutoQC\raw files\20210506_CON_10.raw

26 Mar 2024 13:54:10,130 DEBUG:   D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-10.raw

26 Mar 2024 13:54:10,130 DEBUG:   D:\AutoQC\raw files\03_25_24_Orbitrap_240_800_CON_PFAS-1_20240325143256.raw

26 Mar 2024 13:54:10,130 DEBUG:   D:\AutoQC\raw files\06_01_22_AutoQC_800ngL.raw

26 Mar 2024 13:54:10,130 DEBUG:   D:\AutoQC\raw files\20210826_800CON.raw

26 Mar 2024 13:54:10,130 DEBUG:   D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-2.raw

26 Mar 2024 13:54:10,130 DEBUG:   D:\AutoQC\raw files\20210506_800CON.raw

26 Mar 2024 13:54:10,130 DEBUG:   D:\AutoQC\raw files\20210210_large_800CON_inj2.raw

26 Mar 2024 13:54:10,130 DEBUG:   D:\AutoQC\raw files\09_19_22_Orbitrap_240_800_CON_PFAS-1.raw

26 Mar 2024 13:54:10,130 DEBUG:   D:\AutoQC\raw files\20210825_800CON_03.raw

26 Mar 2024 13:54:10,130 DEBUG:   D:\AutoQC\raw files\20210506_CON_04.raw

26 Mar 2024 13:54:10,130 DEBUG:   D:\AutoQC\raw files\20220201_AutoQC-1_20220201144608.raw

26 Mar 2024 13:54:10,130 DEBUG:   D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-1.raw

26 Mar 2024 13:54:10,130 DEBUG:   D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-3.raw

26 Mar 2024 13:54:15,491 INFO : 98% Done

26 Mar 2024 13:54:15,491 INFO : Done updating previously imported sample file data.

26 Mar 2024 13:54:16,200 INFO : All the related sampleFiles for /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2024-03-25_15-23-17.sky.zip have been updated with newer data.

26 Mar 2024 13:54:16,200 INFO : Deleting /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2024-03-25_15-23-17.sky.zip

26 Mar 2024 13:54:16,200 INFO : Deleting directory /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2024-03-25_15-23-17

26 Mar 2024 13:54:16,200 INFO : Creating and populating temp tables for Proportion values

26 Mar 2024 13:54:16,212 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

26 Mar 2024 13:54:16,402 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

26 Mar 2024 13:54:16,457 INFO : Cleaning up temp tables

26 Mar 2024 13:54:16,768 INFO : Completed import of Skyline document from 20210630_Auto_QC_800_CON_Mix1_2024-03-26_16-53-51.sky.zip

26 Mar 2024 13:54:16,770 INFO : 100% Done

26 Mar 2024 13:54:16,798 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'