25 Mar 2024 11:27:00,537 DEBUG: Resetting Job ID: 7e6413cf-cd02-103c-9b9b-fea6ddf56e5e

25 Mar 2024 11:27:00,559 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

25 Mar 2024 11:27:00,560 INFO : Starting to import Skyline document from 20210630_Auto_QC_800_CON_Mix1_2024-03-25_14-26-49.sky.zip

25 Mar 2024 11:27:00,560 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.skyd

25 Mar 2024 11:27:01,465 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.sky

25 Mar 2024 11:27:01,579 INFO : 2% Done

25 Mar 2024 11:27:01,845 DEBUG: Starting to load chromatogram headers

25 Mar 2024 11:27:01,855 DEBUG: Done loading chromatogram headers

25 Mar 2024 11:27:03,814 INFO : Inserting Precursors_Mix_1

25 Mar 2024 11:27:03,822 INFO : 4% Done

25 Mar 2024 11:27:03,884 INFO : 7% Done

25 Mar 2024 11:27:03,944 INFO : 10% Done

25 Mar 2024 11:27:04,001 INFO : 12% Done

25 Mar 2024 11:27:04,057 INFO : 14% Done

25 Mar 2024 11:27:04,114 INFO : 17% Done

25 Mar 2024 11:27:04,172 INFO : 19% Done

25 Mar 2024 11:27:04,227 INFO : 22% Done

25 Mar 2024 11:27:04,285 INFO : 25% Done

25 Mar 2024 11:27:04,341 INFO : 27% Done

25 Mar 2024 11:27:04,400 INFO : 29% Done

25 Mar 2024 11:27:04,456 INFO : 32% Done

25 Mar 2024 11:27:04,517 INFO : 35% Done

25 Mar 2024 11:27:04,576 INFO : 37% Done

25 Mar 2024 11:27:04,634 INFO : 40% Done

25 Mar 2024 11:27:04,693 INFO : 43% Done

25 Mar 2024 11:27:04,751 INFO : 45% Done

25 Mar 2024 11:27:04,810 INFO : 47% Done

25 Mar 2024 11:27:04,866 INFO : 50% Done

25 Mar 2024 11:27:04,923 INFO : 53% Done

25 Mar 2024 11:27:04,982 INFO : 55% Done

25 Mar 2024 11:27:05,039 INFO : 58% Done

25 Mar 2024 11:27:05,099 INFO : 60% Done

25 Mar 2024 11:27:05,150 DEBUG: Total molecules inserted: 23

25 Mar 2024 11:27:05,152 INFO : Done parsing Skyline document.

25 Mar 2024 11:27:05,211 INFO : No group comparisons found.

25 Mar 2024 11:27:05,211 INFO : Calculating calibration curves

25 Mar 2024 11:27:05,212 DEBUG: Calculating calibration curve for Precursors_Mix_1, 1 of 1

25 Mar 2024 11:27:05,456 INFO : 68% Done

25 Mar 2024 11:27:05,459 INFO : Done calculating calibration curves.

25 Mar 2024 11:27:05,460 INFO : Updating previously imported data for 84 old sample files.

25 Mar 2024 11:27:05,460 DEBUG: Found data for the following old sample files in the QC folder:

25 Mar 2024 11:27:05,461 DEBUG:   D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-7.raw

25 Mar 2024 11:27:05,461 DEBUG:   D:\AutoQC\raw files\20210630_OLD_CON.raw

25 Mar 2024 11:27:05,461 DEBUG:   D:\AutoQC\raw files\20210629_Curve_800CON_04.raw

25 Mar 2024 11:27:05,461 DEBUG:   D:\AutoQC\raw files\20210210_large_800CON_inj8.raw

25 Mar 2024 11:27:05,461 DEBUG:   D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-9.raw

25 Mar 2024 11:27:05,461 DEBUG:   D:\AutoQC\raw files\04_07_23_Orbitrap_240_800_CON_PFAS-2.raw

25 Mar 2024 11:27:05,461 DEBUG:   D:\AutoQC\raw files\20210629_Curve_800CON_03.raw

25 Mar 2024 11:27:05,461 DEBUG:   D:\AutoQC\raw files\20210210_large_800CON_inj9.raw

25 Mar 2024 11:27:05,461 DEBUG:   D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-8.raw

25 Mar 2024 11:27:05,461 DEBUG:   D:\AutoQC\raw files\05_26_22_AutoQC_800ngL.raw

25 Mar 2024 11:27:05,461 DEBUG:   D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-6.raw

25 Mar 2024 11:27:05,461 DEBUG:   D:\AutoQC\raw files\20210611-Water_Samples_800CON.raw

25 Mar 2024 11:27:05,461 DEBUG:   D:\AutoQC\raw files\20210630_800QC_A.raw

25 Mar 2024 11:27:05,461 DEBUG:   D:\AutoQC\raw files\20210825_800CON_01.raw

25 Mar 2024 11:27:05,461 DEBUG:   D:\AutoQC\raw files\20210629_Curve_800CON_02.raw

25 Mar 2024 11:27:05,461 DEBUG:   D:\AutoQC\raw files\11_03_23_Orbitrap_240_800_CON_PFAS-1.raw

25 Mar 2024 11:27:05,461 DEBUG:   D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-9.raw

25 Mar 2024 11:27:05,461 DEBUG:   D:\AutoQC\raw files\04_07_23_Orbitrap_240_800_CON_PFAS-1.raw

25 Mar 2024 11:27:05,461 DEBUG:   D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-5.raw

25 Mar 2024 11:27:05,462 DEBUG:   D:\AutoQC\raw files\20210330_800CON.raw

25 Mar 2024 11:27:05,462 DEBUG:   D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-7.raw

25 Mar 2024 11:27:05,462 DEBUG:   D:\AutoQC\raw files\20210903_800CON.raw

25 Mar 2024 11:27:05,462 DEBUG:   D:\AutoQC\raw files\20210825_800CON_07.raw

25 Mar 2024 11:27:05,462 DEBUG:   D:\AutoQC\raw files\20210629_Curve_800CON.raw

25 Mar 2024 11:27:05,462 DEBUG:   D:\AutoQC\raw files\20210901_800CON_small.raw

25 Mar 2024 11:27:05,462 DEBUG:   D:\AutoQC\raw files\20210629_Curve_800CON_01.raw

25 Mar 2024 11:27:05,462 DEBUG:   D:\AutoQC\raw files\20210611-Water_Samples_800CON_20210614161228.raw

25 Mar 2024 11:27:05,462 DEBUG:   D:\AutoQC\raw files\02_17_23_Orbitrap_240_800_CON_PFAS-1.raw

25 Mar 2024 11:27:05,462 DEBUG:   D:\AutoQC\raw files\20210506_CON_02.raw

25 Mar 2024 11:27:05,462 DEBUG:   D:\AutoQC\raw files\20210506_CON_08.raw

25 Mar 2024 11:27:05,462 DEBUG:   D:\AutoQC\raw files\20210323_800CON.raw

25 Mar 2024 11:27:05,462 DEBUG:   D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-10.raw

25 Mar 2024 11:27:05,462 DEBUG:   D:\AutoQC\raw files\20210210_large_800CON_inj5.raw

25 Mar 2024 11:27:05,462 DEBUG:   D:\AutoQC\raw files\20210210_large_800CON_inj7.raw

25 Mar 2024 11:27:05,462 DEBUG:   D:\AutoQC\raw files\20210825_800CON_06.raw

25 Mar 2024 11:27:05,462 DEBUG:   D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-6.raw

25 Mar 2024 11:27:05,462 DEBUG:   D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-8.raw

25 Mar 2024 11:27:05,462 DEBUG:   D:\AutoQC\raw files\20210506_CON_01.raw

25 Mar 2024 11:27:05,462 DEBUG:   D:\AutoQC\raw files\20220201_AutoQC-2.raw

25 Mar 2024 11:27:05,462 DEBUG:   D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-5.raw

25 Mar 2024 11:27:05,462 DEBUG:   D:\AutoQC\raw files\20210210_large_800CON_inj6.raw

25 Mar 2024 11:27:05,462 DEBUG:   D:\AutoQC\raw files\20210506_CON_09.raw

25 Mar 2024 11:27:05,462 DEBUG:   D:\AutoQC\raw files\09_27_22_Orbitrap_240_800_CON_PFAS-2.raw

25 Mar 2024 11:27:05,462 DEBUG:   D:\AutoQC\raw files\20210506_CON_05.raw

25 Mar 2024 11:27:05,462 DEBUG:   D:\AutoQC\raw files\20210506_800CON_A.raw

25 Mar 2024 11:27:05,462 DEBUG:   D:\AutoQC\raw files\04_22_22_AutoQC_800ngL.raw

25 Mar 2024 11:27:05,462 DEBUG:   D:\AutoQC\raw files\20210825_800CON_04.raw

25 Mar 2024 11:27:05,462 DEBUG:   D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-4.raw

25 Mar 2024 11:27:05,462 DEBUG:   D:\AutoQC\raw files\20210210_large_800CON_inj3.raw

25 Mar 2024 11:27:05,462 DEBUG:   D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-2.raw

25 Mar 2024 11:27:05,462 DEBUG:   D:\AutoQC\raw files\20220201_AutoQC-3.raw

25 Mar 2024 11:27:05,463 DEBUG:   D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-1.raw

25 Mar 2024 11:27:05,463 DEBUG:   D:\AutoQC\raw files\20210506_CON_12.raw

25 Mar 2024 11:27:05,463 DEBUG:   D:\AutoQC\raw files\20210506_CON_06.raw

25 Mar 2024 11:27:05,463 DEBUG:   D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON_A.raw

25 Mar 2024 11:27:05,463 DEBUG:   D:\AutoQC\raw files\09_27_22_Orbitrap_240_800_CON_PFAS-1.raw

25 Mar 2024 11:27:05,463 DEBUG:   D:\AutoQC\raw files\20210506_CON_03.raw

25 Mar 2024 11:27:05,463 DEBUG:   D:\AutoQC\raw files\11_01_23_Orbitrap_240_800_CON_PFAS-1.raw

25 Mar 2024 11:27:05,463 DEBUG:   D:\AutoQC\raw files\20210825_800CON_05.raw

25 Mar 2024 11:27:05,463 DEBUG:   D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-3.raw

25 Mar 2024 11:27:05,463 DEBUG:   D:\AutoQC\raw files\04_22_22_Orbitrap 240 800 CON PFAS.raw

25 Mar 2024 11:27:05,463 DEBUG:   D:\AutoQC\raw files\20210506_CON_07.raw

25 Mar 2024 11:27:05,463 DEBUG:   D:\AutoQC\raw files\20210210_large_800CON_inj4.raw

25 Mar 2024 11:27:05,463 DEBUG:   D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON.raw

25 Mar 2024 11:27:05,463 DEBUG:   D:\AutoQC\raw files\04_11_23_Orbitrap_240_800_CON_PFAS-1.raw

25 Mar 2024 11:27:05,463 DEBUG:   D:\AutoQC\raw files\20210210_large_800CON_inj1.raw

25 Mar 2024 11:27:05,463 DEBUG:   D:\AutoQC\raw files\20210506_CON_11.raw

25 Mar 2024 11:27:05,463 DEBUG:   D:\AutoQC\raw files\03_04_22_Orbitrap_240_800_CON_PFAS.raw

25 Mar 2024 11:27:05,463 DEBUG:   D:\AutoQC\raw files\20210825_800CON_02.raw

25 Mar 2024 11:27:05,463 DEBUG:   D:\AutoQC\raw files\09_19_22_Orbitrap_240_800_CON_PFAS-2.raw

25 Mar 2024 11:27:05,463 DEBUG:   D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-4.raw

25 Mar 2024 11:27:05,463 DEBUG:   D:\AutoQC\raw files\20210506_CON_10.raw

25 Mar 2024 11:27:05,463 DEBUG:   D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-10.raw

25 Mar 2024 11:27:05,463 DEBUG:   D:\AutoQC\raw files\06_01_22_AutoQC_800ngL.raw

25 Mar 2024 11:27:05,463 DEBUG:   D:\AutoQC\raw files\20210826_800CON.raw

25 Mar 2024 11:27:05,463 DEBUG:   D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-2.raw

25 Mar 2024 11:27:05,463 DEBUG:   D:\AutoQC\raw files\20210506_800CON.raw

25 Mar 2024 11:27:05,463 DEBUG:   D:\AutoQC\raw files\20210210_large_800CON_inj2.raw

25 Mar 2024 11:27:05,463 DEBUG:   D:\AutoQC\raw files\09_19_22_Orbitrap_240_800_CON_PFAS-1.raw

25 Mar 2024 11:27:05,463 DEBUG:   D:\AutoQC\raw files\20210825_800CON_03.raw

25 Mar 2024 11:27:05,463 DEBUG:   D:\AutoQC\raw files\20210506_CON_04.raw

25 Mar 2024 11:27:05,463 DEBUG:   D:\AutoQC\raw files\20220201_AutoQC-1_20220201144608.raw

25 Mar 2024 11:27:05,463 DEBUG:   D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-1.raw

25 Mar 2024 11:27:05,463 DEBUG:   D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-3.raw

25 Mar 2024 11:27:11,012 INFO : 98% Done

25 Mar 2024 11:27:11,012 INFO : Done updating previously imported sample file data.

25 Mar 2024 11:27:11,032 INFO : Creating and populating temp tables for Proportion values

25 Mar 2024 11:27:11,045 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

25 Mar 2024 11:27:11,193 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

25 Mar 2024 11:27:11,245 INFO : Cleaning up temp tables

25 Mar 2024 11:27:11,544 INFO : Completed import of Skyline document from 20210630_Auto_QC_800_CON_Mix1_2024-03-25_14-26-49.sky.zip

25 Mar 2024 11:27:11,547 INFO : 100% Done

25 Mar 2024 11:27:11,577 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'