03 Nov 2023 11:37:09,609 DEBUG: Resetting Job ID: 2e6fab5b-5ca5-103c-bc68-fea6ddf5ace0

03 Nov 2023 11:37:09,632 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

03 Nov 2023 11:37:09,633 INFO : Starting to import Skyline document from 20210630_Auto_QC_800_CON_Mix1_2023-11-03_14-36-53.sky.zip

03 Nov 2023 11:37:09,634 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.skyd

03 Nov 2023 11:37:11,206 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.sky

03 Nov 2023 11:37:11,237 INFO : 2% Done

03 Nov 2023 11:37:11,615 DEBUG: Starting to load chromatogram headers

03 Nov 2023 11:37:11,628 DEBUG: Done loading chromatogram headers

03 Nov 2023 11:37:12,069 INFO : Inserting Precursors_Mix_1

03 Nov 2023 11:37:12,078 INFO : 4% Done

03 Nov 2023 11:37:12,157 INFO : 7% Done

03 Nov 2023 11:37:12,236 INFO : 10% Done

03 Nov 2023 11:37:12,316 INFO : 12% Done

03 Nov 2023 11:37:12,395 INFO : 14% Done

03 Nov 2023 11:37:12,476 INFO : 17% Done

03 Nov 2023 11:37:12,563 INFO : 19% Done

03 Nov 2023 11:37:12,646 INFO : 22% Done

03 Nov 2023 11:37:12,730 INFO : 25% Done

03 Nov 2023 11:37:12,818 INFO : 27% Done

03 Nov 2023 11:37:12,913 INFO : 29% Done

03 Nov 2023 11:37:13,000 INFO : 32% Done

03 Nov 2023 11:37:13,093 INFO : 35% Done

03 Nov 2023 11:37:13,180 INFO : 37% Done

03 Nov 2023 11:37:13,268 INFO : 40% Done

03 Nov 2023 11:37:13,356 INFO : 43% Done

03 Nov 2023 11:37:13,438 INFO : 45% Done

03 Nov 2023 11:37:13,522 INFO : 47% Done

03 Nov 2023 11:37:13,608 INFO : 50% Done

03 Nov 2023 11:37:13,701 INFO : 53% Done

03 Nov 2023 11:37:13,792 INFO : 55% Done

03 Nov 2023 11:37:13,873 INFO : 58% Done

03 Nov 2023 11:37:13,952 INFO : 60% Done

03 Nov 2023 11:37:14,021 DEBUG: Total molecules inserted: 23

03 Nov 2023 11:37:14,023 INFO : Done parsing Skyline document.

03 Nov 2023 11:37:14,085 INFO : No group comparisons found.

03 Nov 2023 11:37:14,085 INFO : Calculating calibration curves

03 Nov 2023 11:37:14,086 DEBUG: Calculating calibration curve for Precursors_Mix_1, 1 of 1

03 Nov 2023 11:37:14,347 INFO : 68% Done

03 Nov 2023 11:37:14,350 INFO : Done calculating calibration curves.

03 Nov 2023 11:37:14,823 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-7.raw in QC folder. 1 of 83

03 Nov 2023 11:37:15,327 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_OLD_CON.raw in QC folder. 2 of 83

03 Nov 2023 11:37:15,329 INFO : 69% Done

03 Nov 2023 11:37:15,832 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_04.raw in QC folder. 3 of 83

03 Nov 2023 11:37:16,342 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj8.raw in QC folder. 4 of 83

03 Nov 2023 11:37:16,344 INFO : 70% Done

03 Nov 2023 11:37:16,826 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-9.raw in QC folder. 5 of 83

03 Nov 2023 11:37:17,296 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\04_07_23_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 6 of 83

03 Nov 2023 11:37:17,790 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_03.raw in QC folder. 7 of 83

03 Nov 2023 11:37:18,286 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj9.raw in QC folder. 8 of 83

03 Nov 2023 11:37:18,287 INFO : 71% Done

03 Nov 2023 11:37:18,801 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-8.raw in QC folder. 9 of 83

03 Nov 2023 11:37:19,273 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\05_26_22_AutoQC_800ngL.raw in QC folder. 10 of 83

03 Nov 2023 11:37:19,275 INFO : 72% Done

03 Nov 2023 11:37:19,754 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-6.raw in QC folder. 11 of 83

03 Nov 2023 11:37:20,222 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON.raw in QC folder. 12 of 83

03 Nov 2023 11:37:20,719 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_800QC_A.raw in QC folder. 13 of 83

03 Nov 2023 11:37:20,721 INFO : 73% Done

03 Nov 2023 11:37:21,216 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_01.raw in QC folder. 14 of 83

03 Nov 2023 11:37:21,711 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_02.raw in QC folder. 15 of 83

03 Nov 2023 11:37:22,182 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-9.raw in QC folder. 16 of 83

03 Nov 2023 11:37:22,183 INFO : 74% Done

03 Nov 2023 11:37:22,648 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\04_07_23_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 17 of 83

03 Nov 2023 11:37:23,154 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-5.raw in QC folder. 18 of 83

03 Nov 2023 11:37:23,156 INFO : 75% Done

03 Nov 2023 11:37:23,639 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210330_800CON.raw in QC folder. 19 of 83

03 Nov 2023 11:37:24,141 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-7.raw in QC folder. 20 of 83

03 Nov 2023 11:37:24,622 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210903_800CON.raw in QC folder. 21 of 83

03 Nov 2023 11:37:24,623 INFO : 76% Done

03 Nov 2023 11:37:25,081 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_07.raw in QC folder. 22 of 83

03 Nov 2023 11:37:25,548 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON.raw in QC folder. 23 of 83

03 Nov 2023 11:37:26,024 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210901_800CON_small.raw in QC folder. 24 of 83

03 Nov 2023 11:37:26,026 INFO : 77% Done

03 Nov 2023 11:37:26,520 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_01.raw in QC folder. 25 of 83

03 Nov 2023 11:37:26,992 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON_20210614161228.raw in QC folder. 26 of 83

03 Nov 2023 11:37:27,447 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\02_17_23_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 27 of 83

03 Nov 2023 11:37:27,448 INFO : 78% Done

03 Nov 2023 11:37:27,918 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_02.raw in QC folder. 28 of 83

03 Nov 2023 11:37:28,387 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_08.raw in QC folder. 29 of 83

03 Nov 2023 11:37:28,388 INFO : 79% Done

03 Nov 2023 11:37:28,899 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210323_800CON.raw in QC folder. 30 of 83

03 Nov 2023 11:37:29,375 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-10.raw in QC folder. 31 of 83

03 Nov 2023 11:37:29,833 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj5.raw in QC folder. 32 of 83

03 Nov 2023 11:37:29,835 INFO : 80% Done

03 Nov 2023 11:37:30,282 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj7.raw in QC folder. 33 of 83

03 Nov 2023 11:37:30,718 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_06.raw in QC folder. 34 of 83

03 Nov 2023 11:37:31,184 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-6.raw in QC folder. 35 of 83

03 Nov 2023 11:37:31,185 INFO : 81% Done

03 Nov 2023 11:37:31,663 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-8.raw in QC folder. 36 of 83

03 Nov 2023 11:37:32,163 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_01.raw in QC folder. 37 of 83

03 Nov 2023 11:37:32,164 INFO : 82% Done

03 Nov 2023 11:37:32,627 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-2.raw in QC folder. 38 of 83

03 Nov 2023 11:37:33,082 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-5.raw in QC folder. 39 of 83

03 Nov 2023 11:37:33,550 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj6.raw in QC folder. 40 of 83

03 Nov 2023 11:37:34,052 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_09.raw in QC folder. 41 of 83

03 Nov 2023 11:37:34,054 INFO : 83% Done

03 Nov 2023 11:37:34,595 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\09_27_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 42 of 83

03 Nov 2023 11:37:35,080 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_05.raw in QC folder. 43 of 83

03 Nov 2023 11:37:35,082 INFO : 84% Done

03 Nov 2023 11:37:35,536 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON_A.raw in QC folder. 44 of 83

03 Nov 2023 11:37:35,998 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\04_22_22_AutoQC_800ngL.raw in QC folder. 45 of 83

03 Nov 2023 11:37:36,471 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_04.raw in QC folder. 46 of 83

03 Nov 2023 11:37:36,473 INFO : 85% Done

03 Nov 2023 11:37:37,015 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-4.raw in QC folder. 47 of 83

03 Nov 2023 11:37:37,512 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj3.raw in QC folder. 48 of 83

03 Nov 2023 11:37:37,973 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 49 of 83

03 Nov 2023 11:37:37,975 INFO : 86% Done

03 Nov 2023 11:37:38,407 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-3.raw in QC folder. 50 of 83

03 Nov 2023 11:37:38,849 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 51 of 83

03 Nov 2023 11:37:39,320 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_12.raw in QC folder. 52 of 83

03 Nov 2023 11:37:39,322 INFO : 87% Done

03 Nov 2023 11:37:39,817 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_06.raw in QC folder. 53 of 83

03 Nov 2023 11:37:40,328 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON_A.raw in QC folder. 54 of 83

03 Nov 2023 11:37:40,330 INFO : 88% Done

03 Nov 2023 11:37:40,799 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\09_27_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 55 of 83

03 Nov 2023 11:37:41,257 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_03.raw in QC folder. 56 of 83

03 Nov 2023 11:37:41,749 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\11_01_23_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 57 of 83

03 Nov 2023 11:37:41,751 INFO : 89% Done

03 Nov 2023 11:37:42,234 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_05.raw in QC folder. 58 of 83

03 Nov 2023 11:37:42,726 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-3.raw in QC folder. 59 of 83

03 Nov 2023 11:37:43,181 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\04_22_22_Orbitrap 240 800 CON PFAS.raw in QC folder. 60 of 83

03 Nov 2023 11:37:43,183 INFO : 90% Done

03 Nov 2023 11:37:43,639 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_07.raw in QC folder. 61 of 83

03 Nov 2023 11:37:44,101 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj4.raw in QC folder. 62 of 83

03 Nov 2023 11:37:44,103 INFO : 91% Done

03 Nov 2023 11:37:44,580 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON.raw in QC folder. 63 of 83

03 Nov 2023 11:37:45,068 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\04_11_23_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 64 of 83

03 Nov 2023 11:37:45,558 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj1.raw in QC folder. 65 of 83

03 Nov 2023 11:37:46,033 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_11.raw in QC folder. 66 of 83

03 Nov 2023 11:37:46,034 INFO : 92% Done

03 Nov 2023 11:37:46,505 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Orbitrap_240_800_CON_PFAS.raw in QC folder. 67 of 83

03 Nov 2023 11:37:46,965 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_02.raw in QC folder. 68 of 83

03 Nov 2023 11:37:46,967 INFO : 93% Done

03 Nov 2023 11:37:47,419 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\09_19_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 69 of 83

03 Nov 2023 11:37:47,875 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-4.raw in QC folder. 70 of 83

03 Nov 2023 11:37:48,326 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_10.raw in QC folder. 71 of 83

03 Nov 2023 11:37:48,327 INFO : 94% Done

03 Nov 2023 11:37:48,788 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-10.raw in QC folder. 72 of 83

03 Nov 2023 11:37:49,240 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\06_01_22_AutoQC_800ngL.raw in QC folder. 73 of 83

03 Nov 2023 11:37:49,705 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210826_800CON.raw in QC folder. 74 of 83

03 Nov 2023 11:37:49,706 INFO : 95% Done

03 Nov 2023 11:37:50,174 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 75 of 83

03 Nov 2023 11:37:50,639 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON.raw in QC folder. 76 of 83

03 Nov 2023 11:37:50,640 INFO : 96% Done

03 Nov 2023 11:37:51,094 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj2.raw in QC folder. 77 of 83

03 Nov 2023 11:37:51,565 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\09_19_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 78 of 83

03 Nov 2023 11:37:52,032 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_03.raw in QC folder. 79 of 83

03 Nov 2023 11:37:52,033 INFO : 97% Done

03 Nov 2023 11:37:52,493 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_04.raw in QC folder. 80 of 83

03 Nov 2023 11:37:52,948 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-1_20220201144608.raw in QC folder. 81 of 83

03 Nov 2023 11:37:53,400 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 82 of 83

03 Nov 2023 11:37:53,401 INFO : 98% Done

03 Nov 2023 11:37:53,852 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-3.raw in QC folder. 83 of 83

03 Nov 2023 11:37:53,853 INFO : Done updating previously imported sample file data.

03 Nov 2023 11:37:54,602 INFO : All the related sampleFiles for /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2023-11-01_12-42-28.sky.zip have been updated with newer data.

03 Nov 2023 11:37:54,602 INFO : Deleting /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2023-11-01_12-42-28.sky.zip

03 Nov 2023 11:37:54,602 INFO : Deleting directory /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2023-11-01_12-42-28

03 Nov 2023 11:37:54,603 INFO : Creating and populating temp tables for Proportion values

03 Nov 2023 11:37:54,746 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

03 Nov 2023 11:37:54,934 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

03 Nov 2023 11:37:55,003 INFO : Cleaning up temp tables

03 Nov 2023 11:37:55,275 INFO : Completed import of Skyline document from 20210630_Auto_QC_800_CON_Mix1_2023-11-03_14-36-53.sky.zip

03 Nov 2023 11:37:55,277 INFO : 100% Done

03 Nov 2023 11:37:55,307 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'